Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49238.t1 | KEH39446.1 | 73.9 | 671 | 157 | 4 | 9 | 665 | 1 | 667 | 5.20E-267 | 930.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49238.t1 | Q9LMH6 | 37.9 | 750 | 333 | 18 | 20 | 662 | 9 | 732 | 6.7e-106 | 386.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49238.t1 | A0A072VCY0 | 73.9 | 671 | 157 | 4 | 9 | 665 | 1 | 667 | 3.7e-267 | 930.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50163 | MS.gene49238 | PPI |
| MS.gene32555 | MS.gene49238 | PPI |
| MS.gene62214 | MS.gene49238 | PPI |
| MS.gene63327 | MS.gene49238 | PPI |
| MS.gene64671 | MS.gene49238 | PPI |
| MS.gene29489 | MS.gene49238 | PPI |
| MS.gene008185 | MS.gene49238 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49238.t1 | MTR_2g097020 | 80.506 | 672 | 111 | 5 | 9 | 665 | 1 | 667 | 0.0 | 1054 |
| MS.gene49238.t1 | MTR_2g095400 | 77.126 | 682 | 86 | 8 | 9 | 665 | 1 | 637 | 0.0 | 977 |
| MS.gene49238.t1 | MTR_4g046643 | 74.701 | 668 | 126 | 5 | 9 | 648 | 1 | 653 | 0.0 | 941 |
| MS.gene49238.t1 | MTR_2g097010 | 74.487 | 682 | 145 | 5 | 9 | 665 | 1 | 678 | 0.0 | 934 |
| MS.gene49238.t1 | MTR_2g097000 | 68.112 | 392 | 82 | 6 | 313 | 665 | 2 | 389 | 6.83e-168 | 486 |
| MS.gene49238.t1 | MTR_4g126200 | 76.046 | 263 | 49 | 3 | 405 | 665 | 3 | 253 | 4.56e-133 | 392 |
| MS.gene49238.t1 | MTR_3g067815 | 37.021 | 678 | 338 | 15 | 18 | 660 | 13 | 636 | 3.19e-131 | 400 |
| MS.gene49238.t1 | MTR_5g079940 | 36.173 | 669 | 352 | 16 | 29 | 663 | 492 | 1119 | 2.01e-119 | 383 |
| MS.gene49238.t1 | MTR_4g006760 | 33.582 | 670 | 340 | 15 | 29 | 661 | 24 | 625 | 4.18e-105 | 332 |
| MS.gene49238.t1 | MTR_4g131350 | 34.718 | 674 | 332 | 18 | 29 | 663 | 77 | 681 | 4.85e-104 | 331 |
| MS.gene49238.t1 | MTR_4g125920 | 34.426 | 671 | 338 | 17 | 29 | 663 | 24 | 628 | 1.79e-102 | 326 |
| MS.gene49238.t1 | MTR_3g067855 | 45.494 | 233 | 108 | 6 | 432 | 663 | 123 | 337 | 3.10e-49 | 176 |
| MS.gene49238.t1 | MTR_3g067845 | 36.882 | 263 | 147 | 5 | 402 | 663 | 6 | 250 | 1.60e-35 | 135 |
| MS.gene49238.t1 | MTR_8g446460 | 55.147 | 136 | 56 | 3 | 17 | 150 | 107 | 239 | 1.54e-34 | 134 |
| MS.gene49238.t1 | MTR_4g126180 | 70.213 | 94 | 28 | 0 | 314 | 407 | 3 | 96 | 5.20e-33 | 123 |
| MS.gene49238.t1 | MTR_4g131310 | 24.773 | 440 | 236 | 12 | 29 | 449 | 24 | 387 | 6.11e-27 | 115 |
| MS.gene49238.t1 | MTR_4g131310 | 60.938 | 64 | 25 | 0 | 590 | 653 | 391 | 454 | 4.20e-18 | 88.2 |
| MS.gene49238.t1 | MTR_2g066850 | 61.176 | 85 | 28 | 3 | 10 | 92 | 66 | 147 | 4.35e-21 | 99.0 |
| MS.gene49238.t1 | MTR_2g075630 | 67.692 | 65 | 18 | 2 | 10 | 74 | 67 | 128 | 4.54e-20 | 90.9 |
| MS.gene49238.t1 | MTR_3g067825 | 45.745 | 94 | 46 | 2 | 574 | 663 | 10 | 102 | 5.76e-17 | 77.8 |
| MS.gene49238.t1 | MTR_8g063010 | 55.696 | 79 | 30 | 3 | 26 | 104 | 57 | 130 | 3.01e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49238.t1 | AT1G13790 | 44.547 | 541 | 252 | 9 | 143 | 656 | 207 | 726 | 6.09e-130 | 400 |
| MS.gene49238.t1 | AT1G13790 | 44.547 | 541 | 252 | 9 | 143 | 656 | 207 | 726 | 6.09e-130 | 400 |
| MS.gene49238.t1 | AT3G48670 | 34.191 | 661 | 344 | 13 | 40 | 663 | 38 | 644 | 7.08e-102 | 325 |
| MS.gene49238.t1 | AT3G48670 | 34.191 | 661 | 344 | 13 | 40 | 663 | 38 | 644 | 7.08e-102 | 325 |
| MS.gene49238.t1 | AT3G48670 | 34.191 | 661 | 344 | 13 | 40 | 663 | 38 | 644 | 7.08e-102 | 325 |
| MS.gene49238.t1 | AT3G12550 | 33.626 | 684 | 357 | 15 | 24 | 664 | 8 | 637 | 9.68e-102 | 324 |
| MS.gene49238.t1 | AT3G12550 | 33.577 | 685 | 357 | 16 | 24 | 664 | 8 | 638 | 4.58e-100 | 320 |
| MS.gene49238.t1 | AT3G12550 | 33.577 | 685 | 357 | 16 | 24 | 664 | 8 | 638 | 4.58e-100 | 320 |
| MS.gene49238.t1 | AT3G12550 | 33.577 | 685 | 357 | 16 | 24 | 664 | 8 | 638 | 4.58e-100 | 320 |
| MS.gene49238.t1 | AT1G15910 | 32.206 | 680 | 359 | 16 | 24 | 664 | 18 | 634 | 3.66e-93 | 301 |
| MS.gene49238.t1 | AT5G59390 | 36.891 | 534 | 274 | 14 | 156 | 654 | 34 | 539 | 8.97e-89 | 288 |
| MS.gene49238.t1 | AT5G59390 | 36.891 | 534 | 274 | 14 | 156 | 654 | 34 | 539 | 8.97e-89 | 288 |
| MS.gene49238.t1 | AT5G59390 | 36.891 | 534 | 274 | 14 | 156 | 654 | 34 | 539 | 8.97e-89 | 288 |
| MS.gene49238.t1 | AT1G80790 | 32.792 | 677 | 359 | 13 | 23 | 664 | 19 | 634 | 2.00e-88 | 289 |
| MS.gene49238.t1 | AT1G80790 | 32.792 | 677 | 359 | 13 | 23 | 664 | 19 | 634 | 2.00e-88 | 289 |
| MS.gene49238.t1 | AT5G59390 | 36.549 | 539 | 274 | 15 | 156 | 654 | 34 | 544 | 2.29e-86 | 281 |
| MS.gene49238.t1 | AT5G59390 | 36.549 | 539 | 274 | 15 | 156 | 654 | 34 | 544 | 2.29e-86 | 281 |
| MS.gene49238.t1 | AT4G00380 | 30.837 | 681 | 369 | 14 | 23 | 664 | 18 | 635 | 1.15e-85 | 281 |
| MS.gene49238.t1 | AT4G00380 | 30.837 | 681 | 369 | 14 | 23 | 664 | 18 | 635 | 1.15e-85 | 281 |
| MS.gene49238.t1 | AT4G00380 | 34.133 | 542 | 301 | 9 | 155 | 664 | 90 | 607 | 1.47e-84 | 278 |
| MS.gene49238.t1 | AT4G01180 | 34.574 | 564 | 287 | 15 | 138 | 654 | 11 | 539 | 3.26e-82 | 270 |
| MS.gene49238.t1 | AT3G12550 | 31.167 | 600 | 316 | 15 | 24 | 580 | 8 | 553 | 2.51e-69 | 236 |
| MS.gene49238.t1 | AT4G01780 | 35.666 | 443 | 199 | 10 | 223 | 663 | 111 | 469 | 4.20e-64 | 219 |
| MS.gene49238.t1 | AT1G80790 | 28.009 | 457 | 249 | 10 | 23 | 444 | 19 | 430 | 2.86e-43 | 162 |
| MS.gene49238.t1 | AT3G29375 | 41.981 | 212 | 99 | 4 | 453 | 663 | 38 | 226 | 1.30e-42 | 154 |
| MS.gene49238.t1 | AT3G29375 | 41.981 | 212 | 99 | 4 | 453 | 663 | 161 | 349 | 1.05e-40 | 152 |
| MS.gene49238.t1 | AT3G29375 | 36.719 | 128 | 60 | 2 | 453 | 580 | 38 | 144 | 2.19e-15 | 75.1 |
| MS.gene49238.t1 | AT2G16490 | 42.105 | 76 | 44 | 0 | 589 | 664 | 74 | 149 | 4.44e-14 | 71.2 |
Find 140 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTGCAATTGTTGAATT+TGG | 0.070469 | 6.4:-36992108 | MS.gene49238:CDS |
| ATTTCCATTGCTTAATTAAA+TGG | 0.098910 | 6.4:+36989356 | None:intergenic |
| GGGGATTTGAAAACGGTTTC+TGG | 0.111458 | 6.4:-36991901 | MS.gene49238:CDS |
| TTCATTGGTCTTCAGCTTTA+AGG | 0.118185 | 6.4:+36991822 | None:intergenic |
| CACGAGTATATTCTAAATTT+TGG | 0.119844 | 6.4:+36992709 | None:intergenic |
| ACTTGATATTAAGCCATTTC+TGG | 0.218339 | 6.4:-36990007 | MS.gene49238:CDS |
| TTCGTTGGTTAATGTGAATT+TGG | 0.249953 | 6.4:-36992316 | MS.gene49238:CDS |
| GGCAAACACCTCCAGGAAAA+AGG | 0.252537 | 6.4:-36991922 | MS.gene49238:CDS |
| TAAGCAATGGAAATCAAATA+AGG | 0.267301 | 6.4:-36989347 | MS.gene49238:CDS |
| GAGCGAGGAGATAGACTATT+TGG | 0.286214 | 6.4:-36991988 | MS.gene49238:CDS |
| TAGCTTGAGTGTTGTTCTTT+GGG | 0.290615 | 6.4:+36990055 | None:intergenic |
| GATGCTTGAACATTTCAATA+AGG | 0.290672 | 6.4:-36991728 | MS.gene49238:CDS |
| ATAGCTTGAGTGTTGTTCTT+TGG | 0.293353 | 6.4:+36990054 | None:intergenic |
| TAGTCCTTGTTGTAGCAAAA+TGG | 0.309878 | 6.4:+36992588 | None:intergenic |
| CTCTTAGCTGCTTCCAGAAA+TGG | 0.310177 | 6.4:+36989994 | None:intergenic |
| TGTTGTCTGTTCCAATTCAT+TGG | 0.315128 | 6.4:+36991807 | None:intergenic |
| TTTGCTCCATCACTTTCCTT+AGG | 0.315993 | 6.4:+36991758 | None:intergenic |
| GCAGGCTGAACGCGAGTATC+AGG | 0.320309 | 6.4:-36991492 | MS.gene49238:CDS |
| ACAGCTGAAAGGAGCTTTCC+AGG | 0.321504 | 6.4:-36990772 | MS.gene49238:CDS |
| AATTCCAGAGTTCCGGTATT+GGG | 0.334900 | 6.4:+36989419 | None:intergenic |
| AGCGGGATTACTTGGGTTTA+CGG | 0.339146 | 6.4:-36992017 | MS.gene49238:CDS |
| GGAAAAGGAAGAGGAATTAG+AGG | 0.352913 | 6.4:-36990679 | MS.gene49238:CDS |
| TCAACAAACACTGGTTGTTC+AGG | 0.353904 | 6.4:-36990643 | MS.gene49238:CDS |
| TCTTTAAAATTCCAGAGTTC+CGG | 0.355321 | 6.4:+36989412 | None:intergenic |
| CTGTGGTAAGCGGGATTACT+TGG | 0.361186 | 6.4:-36992025 | MS.gene49238:CDS |
| ATATACTCGTGAATCTGATT+TGG | 0.366588 | 6.4:-36992697 | MS.gene49238:CDS |
| TTGCTCCATCACTTTCCTTA+GGG | 0.374227 | 6.4:+36991759 | None:intergenic |
| TCGTTGGTTAATGTGAATTT+GGG | 0.376063 | 6.4:-36992315 | MS.gene49238:CDS |
| CTCTAATGTGATTCATTACC+TGG | 0.385645 | 6.4:+36990754 | None:intergenic |
| AAAGTTTGAAGGATGAGTTC+GGG | 0.387895 | 6.4:-36989510 | MS.gene49238:CDS |
| AAACAAGCTTGTCTCTGGTT+TGG | 0.392657 | 6.4:-36991851 | MS.gene49238:CDS |
| AAAGCTGAAGACCAATGAAT+TGG | 0.393547 | 6.4:-36991818 | MS.gene49238:CDS |
| ATGCTTGAACATTTCAATAA+GGG | 0.393919 | 6.4:-36991727 | MS.gene49238:intron |
| GAAAAGAAGCCGAGGACAAT+AGG | 0.397047 | 6.4:-36991879 | MS.gene49238:CDS |
| TTTCCATTGCTTAATTAAAT+GGG | 0.397793 | 6.4:+36989357 | None:intergenic |
| TGCAAAACAAGCATTGGAAT+TGG | 0.398690 | 6.4:-36990802 | MS.gene49238:CDS |
| AAGCTATAATTTCTGTGAAA+AGG | 0.426145 | 6.4:-36990038 | MS.gene49238:CDS |
| AAAAGTTTGAAGGATGAGTT+CGG | 0.426423 | 6.4:-36989511 | MS.gene49238:CDS |
| GTATCAGGAGAAAGTATCTA+AGG | 0.433133 | 6.4:-36991477 | MS.gene49238:CDS |
| CAGAATGGAGCTGCAGGAAA+AGG | 0.433632 | 6.4:-36990694 | MS.gene49238:CDS |
| AAATTCCAGAGTTCCGGTAT+TGG | 0.433634 | 6.4:+36989418 | None:intergenic |
| AAAGCAAACAAGCTTGTCTC+TGG | 0.443077 | 6.4:-36991856 | MS.gene49238:CDS |
| ACTGCACTGTGGAACCTTCA+TGG | 0.449566 | 6.4:-36992138 | MS.gene49238:CDS |
| TGAAAAGCTGAAAAGTTTGA+AGG | 0.453713 | 6.4:-36989521 | MS.gene49238:CDS |
| TTGCATCCAGTCCTCTCTCC+AGG | 0.453963 | 6.4:+36990820 | None:intergenic |
| GTTTGCTTTCCTATTGTCCT+CGG | 0.455452 | 6.4:+36991870 | None:intergenic |
| CTTCTTCTCAAAATATAGCT+TGG | 0.458126 | 6.4:+36991352 | None:intergenic |
| AGTCCTTGTTGTAGCAAAAT+GGG | 0.460972 | 6.4:+36992589 | None:intergenic |
| AAGCAATGGAAATCAAATAA+GGG | 0.461528 | 6.4:-36989346 | MS.gene49238:CDS |
| TTACTTGGGTTTACGGAAGC+AGG | 0.462289 | 6.4:-36992010 | MS.gene49238:CDS |
| AAGAGGAGCTGATTATGAAA+GGG | 0.465044 | 6.4:-36992179 | MS.gene49238:CDS |
| ATTGTTTGTTCATAGTGGAT+TGG | 0.465199 | 6.4:-36990081 | MS.gene49238:intron |
| GTTTCATTCTTTATTCTGCT+CGG | 0.468270 | 6.4:-36993308 | MS.gene49238:intron |
| CCAGTCTGGAGCTGGAAGTT+CGG | 0.471555 | 6.4:-36991442 | MS.gene49238:CDS |
| AGCAATCAGAATGGAGCTGC+AGG | 0.472823 | 6.4:-36990700 | MS.gene49238:CDS |
| TGAAAATGCCAGTCTGGAGC+TGG | 0.474792 | 6.4:-36991450 | MS.gene49238:CDS |
| GGATCATGAAAATGCCAGTC+TGG | 0.478798 | 6.4:-36991456 | MS.gene49238:CDS |
| CAAACTTATATCCCGTGAAA+AGG | 0.480262 | 6.4:-36991414 | MS.gene49238:CDS |
| TATAATTTCTGTGAAAAGGA+TGG | 0.482190 | 6.4:-36990034 | MS.gene49238:CDS |
| TTTGCAATTGTTGAATTTGG+AGG | 0.485072 | 6.4:-36992105 | MS.gene49238:CDS |
| AAAGAGGAGCTGATTATGAA+AGG | 0.493347 | 6.4:-36992180 | MS.gene49238:CDS |
| ACTTTGAACGGATGCCAACT+TGG | 0.493862 | 6.4:+36989853 | None:intergenic |
| TCCAAATTCAACAATTGCAA+AGG | 0.497847 | 6.4:+36992107 | None:intergenic |
| AGGAAGGAAGGCTTCGTTGA+AGG | 0.499099 | 6.4:-36989389 | MS.gene49238:CDS |
| GAAGGATGAGTTCGGGGATG+AGG | 0.499124 | 6.4:-36989503 | MS.gene49238:CDS |
| GAATGTTGCTAAGGGTTCGT+TGG | 0.504072 | 6.4:-36992331 | MS.gene49238:CDS |
| CACAGTGCAGTAACTTTCAT+CGG | 0.504310 | 6.4:+36992150 | None:intergenic |
| CCGAACTTCCAGCTCCAGAC+TGG | 0.505605 | 6.4:+36991442 | None:intergenic |
| AGCAGAACACTGTGGTAAGC+GGG | 0.507253 | 6.4:-36992034 | MS.gene49238:CDS |
| ACTTGTTAAGAATGTTGCTA+AGG | 0.507417 | 6.4:-36992340 | MS.gene49238:CDS |
| GAGACACACGTCCACAATTG+TGG | 0.510194 | 6.4:-36992544 | MS.gene49238:CDS |
| TTATCAGTTACAACTTTGAA+CGG | 0.511127 | 6.4:+36989841 | None:intergenic |
| TATAGTTGGCAAACACCTCC+AGG | 0.512464 | 6.4:-36991929 | MS.gene49238:CDS |
| GGTATTGGGTACCGACCACT+AGG | 0.514631 | 6.4:+36989433 | None:intergenic |
| AGATAGACTATTTGGTTGGA+TGG | 0.515691 | 6.4:-36991980 | MS.gene49238:CDS |
| TATGATATCGAGGATATAGT+TGG | 0.516733 | 6.4:-36991943 | MS.gene49238:CDS |
| ATGAGTTGTTTGTATATCCA+TGG | 0.518192 | 6.4:-36992281 | MS.gene49238:CDS |
| CCAAATTCAACAATTGCAAA+GGG | 0.521084 | 6.4:+36992108 | None:intergenic |
| TTTCCCATTTAATTAAGCAA+TGG | 0.524848 | 6.4:-36989360 | MS.gene49238:CDS |
| ACTGGATGCAAAACAAGCAT+TGG | 0.525557 | 6.4:-36990808 | MS.gene49238:CDS |
| ACAATGCTATGAAGTTAGAA+AGG | 0.526734 | 6.4:-36992065 | MS.gene49238:CDS |
| AGCTATGGTGATGTTAAAGT+TGG | 0.527340 | 6.4:-36992459 | MS.gene49238:CDS |
| TTGGATGTTGCAGAAAGAAA+AGG | 0.529965 | 6.4:-36990868 | MS.gene49238:intron |
| CTTGTTAAGAATGTTGCTAA+GGG | 0.530987 | 6.4:-36992339 | MS.gene49238:CDS |
| GGTACCCAATACCGGAACTC+TGG | 0.532850 | 6.4:-36989423 | MS.gene49238:CDS |
| GAGGAGATAGACTATTTGGT+TGG | 0.535517 | 6.4:-36991984 | MS.gene49238:CDS |
| AAAGTTGTAACTGATAAAGA+AGG | 0.540435 | 6.4:-36989835 | MS.gene49238:CDS |
| AGAAATCAGCAAGATGCGGC+AGG | 0.543540 | 6.4:-36991510 | MS.gene49238:CDS |
| ATAATTTCTGTGAAAAGGAT+GGG | 0.545043 | 6.4:-36990033 | MS.gene49238:CDS |
| TCATGACCTGGAGAGAGGAC+TGG | 0.550277 | 6.4:-36990826 | MS.gene49238:CDS |
| GACTTATCATTACGAACAGC+AGG | 0.551065 | 6.4:+36992423 | None:intergenic |
| AATCGAGTGGTGCTCGAAGT+GGG | 0.554131 | 6.4:-36989893 | MS.gene49238:CDS |
| CAAAGGGTAATTGTCCATGA+AGG | 0.557538 | 6.4:+36992124 | None:intergenic |
| TAGTGGTCGGTACCCAATAC+CGG | 0.557758 | 6.4:-36989431 | MS.gene49238:CDS |
| AAAATTGGAAGCAATCAGAA+TGG | 0.559788 | 6.4:-36990709 | MS.gene49238:CDS |
| TTTCTAACTTCATAGCATTG+TGG | 0.565243 | 6.4:+36992067 | None:intergenic |
| TGTGGTAAGCGGGATTACTT+GGG | 0.570048 | 6.4:-36992024 | MS.gene49238:CDS |
| AAGGAAGGCTTCGTTGAAGG+AGG | 0.570974 | 6.4:-36989386 | MS.gene49238:CDS |
| GGAGCTGCAGGAAAAGGAAG+AGG | 0.576364 | 6.4:-36990688 | MS.gene49238:CDS |
| ATGCAAGTCACCCACAATTG+TGG | 0.577684 | 6.4:+36992533 | None:intergenic |
| GAATTTGGAGGACAGTGGGA+TGG | 0.580172 | 6.4:-36992093 | MS.gene49238:CDS |
| AAGTAGAAAGTATGTTGCGA+AGG | 0.580726 | 6.4:-36992217 | MS.gene49238:CDS |
| ATGAGGCGAAAGTGTCCCTA+AGG | 0.584555 | 6.4:-36991774 | MS.gene49238:CDS |
| GAAAAGGAAGAGGAATTAGA+GGG | 0.585875 | 6.4:-36990678 | MS.gene49238:CDS |
| GGATCCAACGAAAATTAAAG+AGG | 0.589839 | 6.4:-36992196 | MS.gene49238:CDS |
| AAAATTCATGACCTGGAGAG+AGG | 0.591924 | 6.4:-36990831 | MS.gene49238:CDS |
| TCACTAGCAGTACTAACAGC+AGG | 0.592415 | 6.4:+36992399 | None:intergenic |
| CTTGAAAGATGATTACTACA+AGG | 0.592695 | 6.4:-36992646 | MS.gene49238:CDS |
| TGTTGAATTTGGAGGACAGT+GGG | 0.592870 | 6.4:-36992097 | MS.gene49238:CDS |
| AGACACACGTCCACAATTGT+GGG | 0.595631 | 6.4:-36992543 | MS.gene49238:CDS |
| AGTGTCCCTAAGGAAAGTGA+TGG | 0.598158 | 6.4:-36991764 | MS.gene49238:CDS |
| CAATCGAGTGGTGCTCGAAG+TGG | 0.602767 | 6.4:-36989894 | MS.gene49238:CDS |
| GACTAAGAGAAAACTTTCAG+AGG | 0.605987 | 6.4:-36989932 | MS.gene49238:CDS |
| TGCAGTAGCTACAACTCTGA+AGG | 0.607260 | 6.4:-36989473 | MS.gene49238:CDS |
| TCACAAGAAAATTCATGACC+TGG | 0.607531 | 6.4:-36990838 | MS.gene49238:CDS |
| ACTGTGTTAAAGATCCAAGT+TGG | 0.608444 | 6.4:-36989867 | MS.gene49238:CDS |
| TTGGAGATTGAACAGCTGAA+AGG | 0.614196 | 6.4:-36990783 | MS.gene49238:CDS |
| GGAAGATCTTCAACAAACAC+TGG | 0.622373 | 6.4:-36990652 | MS.gene49238:CDS |
| TAGCAGAACACTGTGGTAAG+CGG | 0.627292 | 6.4:-36992035 | MS.gene49238:CDS |
| GACAACAAGCAAACATCATG+AGG | 0.628408 | 6.4:-36991791 | MS.gene49238:CDS |
| AGAAAATAAAAGCAATCGAG+TGG | 0.630270 | 6.4:-36989906 | MS.gene49238:CDS |
| GTCTGGAGCTGGAAGTTCGG+AGG | 0.636966 | 6.4:-36991439 | MS.gene49238:CDS |
| AGGAAGGCTTCGTTGAAGGA+GGG | 0.636979 | 6.4:-36989385 | MS.gene49238:CDS |
| GTTGTTTGTATATCCATGGA+TGG | 0.639733 | 6.4:-36992277 | MS.gene49238:CDS |
| AAGTTTGAAGGATGAGTTCG+GGG | 0.641151 | 6.4:-36989509 | MS.gene49238:CDS |
| AAAGGAAGAGGAATTAGAGG+GGG | 0.645418 | 6.4:-36990676 | MS.gene49238:CDS |
| GGTTTACGGAAGCAGGAGCG+AGG | 0.648599 | 6.4:-36992003 | MS.gene49238:CDS |
| TGATAAAGAAGGAAACTCCA+AGG | 0.654804 | 6.4:-36989824 | MS.gene49238:intron |
| AAAAGGAAGAGGAATTAGAG+GGG | 0.657317 | 6.4:-36990677 | MS.gene49238:CDS |
| TTGTTGAATTTGGAGGACAG+TGG | 0.666479 | 6.4:-36992098 | MS.gene49238:CDS |
| GAAATGTATATTGAAAGCTA+TGG | 0.667871 | 6.4:-36992474 | MS.gene49238:CDS |
| ATGAGTACAACCCTAGTGGT+CGG | 0.671880 | 6.4:-36989444 | MS.gene49238:CDS |
| GGTTTCTGGAAAAGAAGCCG+AGG | 0.676719 | 6.4:-36991887 | MS.gene49238:CDS |
| CATTAGAAATCAGCAAGATG+CGG | 0.680318 | 6.4:-36991514 | MS.gene49238:intron |
| TCGTGATGACTATGATATCG+AGG | 0.683981 | 6.4:-36991953 | MS.gene49238:CDS |
| TGTGGGTGACTTGCATGAGA+CGG | 0.697226 | 6.4:-36992526 | MS.gene49238:CDS |
| CGATGAAAGTTACTGCACTG+TGG | 0.699936 | 6.4:-36992149 | MS.gene49238:CDS |
| TTAAATGAGTACAACCCTAG+TGG | 0.705810 | 6.4:-36989448 | MS.gene49238:CDS |
| GTATTGGGTACCGACCACTA+GGG | 0.725721 | 6.4:+36989434 | None:intergenic |
| AGCTTTCTAGCAGAACACTG+TGG | 0.786327 | 6.4:-36992042 | MS.gene49238:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAATTGTAGATAAT+AGG | + | chr6.4:36991712-36991731 | None:intergenic | 10.0% |
| !! | ATAAGTTATTAAAAAATAAG+AGG | + | chr6.4:36991567-36991586 | None:intergenic | 10.0% |
| !!! | TATGATATTTTAATATTTCA+TGG | - | chr6.4:36991078-36991097 | MS.gene49238:intron | 10.0% |
| !! | AAATTAAATTGATCCAATAT+TGG | - | chr6.4:36990949-36990968 | MS.gene49238:intron | 15.0% |
| !! | TAATTAGAAAGAATAGTAAT+TGG | - | chr6.4:36992957-36992976 | MS.gene49238:intron | 15.0% |
| !! | TATTAAAAAATAAGAGGAAT+TGG | + | chr6.4:36991561-36991580 | None:intergenic | 15.0% |
| !!! | ATTTTGAAAAATATTGTTAC+TGG | - | chr6.4:36990388-36990407 | MS.gene49238:intron | 15.0% |
| !!! | TACTAATATATCTATGATTT+TGG | - | chr6.4:36991013-36991032 | MS.gene49238:intron | 15.0% |
| !!! | TTTACATTTTATGTGAAAAT+TGG | - | chr6.4:36992466-36992485 | MS.gene49238:CDS | 15.0% |
| !! | ATAAAATCAACTAGAAAGAA+AGG | + | chr6.4:36989497-36989516 | None:intergenic | 20.0% |
| !! | ATATGTTAGATATATTTCAC+AGG | - | chr6.4:36993077-36993096 | MS.gene49238:intron | 20.0% |
| !! | ATTTATGCTTAGATTTAACA+AGG | + | chr6.4:36992134-36992153 | None:intergenic | 20.0% |
| !! | ATTTCCATTGCTTAATTAAA+TGG | + | chr6.4:36993287-36993306 | None:intergenic | 20.0% |
| !! | TAAAATCAACTAGAAAGAAA+GGG | + | chr6.4:36989496-36989515 | None:intergenic | 20.0% |
| !! | TCTAAATGAGAAGAAAAAAT+TGG | - | chr6.4:36991916-36991935 | MS.gene49238:CDS | 20.0% |
| !! | TTAAATCTAAGCATAAATGT+AGG | - | chr6.4:36992136-36992155 | MS.gene49238:CDS | 20.0% |
| !! | TTTCCATTGCTTAATTAAAT+GGG | + | chr6.4:36993286-36993305 | None:intergenic | 20.0% |
| !!! | AAACATTCAAATCATGTTTT+TGG | - | chr6.4:36992226-36992245 | MS.gene49238:CDS | 20.0% |
| !!! | AGCTTATTTTTAGTTATTGT+TGG | - | chr6.4:36989451-36989470 | MS.gene49238:CDS | 20.0% |
| !!! | TAAATTGGCTTCTTTAAAAA+TGG | - | chr6.4:36991462-36991481 | MS.gene49238:CDS | 20.0% |
| !!! | TTCATAATGTTTCACATTTT+AGG | - | chr6.4:36989561-36989580 | MS.gene49238:intron | 20.0% |
| !!! | TTCTATACTTTACTTTTTCA+TGG | - | chr6.4:36989826-36989845 | MS.gene49238:CDS | 20.0% |
| ! | AAAGTTGTAACTGATAAAGA+AGG | - | chr6.4:36992805-36992824 | MS.gene49238:intron | 25.0% |
| ! | AAGCAATGGAAATCAAATAA+GGG | - | chr6.4:36993294-36993313 | MS.gene49238:intron | 25.0% |
| ! | AAGCTATAATTTCTGTGAAA+AGG | - | chr6.4:36992602-36992621 | MS.gene49238:CDS | 25.0% |
| ! | AATTTACAGGAGAACTAAAT+TGG | - | chr6.4:36991447-36991466 | MS.gene49238:CDS | 25.0% |
| ! | ATAATTTCTGTGAAAAGGAT+GGG | - | chr6.4:36992607-36992626 | MS.gene49238:CDS | 25.0% |
| ! | ATGAACAAACAATGAAATCA+TGG | + | chr6.4:36992552-36992571 | None:intergenic | 25.0% |
| ! | ATGCTTGAACATTTCAATAA+GGG | - | chr6.4:36990913-36990932 | MS.gene49238:intron | 25.0% |
| ! | ATTCCTTAGATATAGAAACT+AGG | + | chr6.4:36992334-36992353 | None:intergenic | 25.0% |
| ! | ATTTCATTGTTTGTTCATAG+TGG | - | chr6.4:36992554-36992573 | MS.gene49238:CDS | 25.0% |
| ! | GAAATGTATATTGAAAGCTA+TGG | - | chr6.4:36990166-36990185 | MS.gene49238:intron | 25.0% |
| ! | TAAGCAATGGAAATCAAATA+AGG | - | chr6.4:36993293-36993312 | MS.gene49238:intron | 25.0% |
| ! | TATAATTTCTGTGAAAAGGA+TGG | - | chr6.4:36992606-36992625 | MS.gene49238:CDS | 25.0% |
| ! | TATGTGAAAATTGGTAGAAT+CGG | - | chr6.4:36992475-36992494 | MS.gene49238:CDS | 25.0% |
| ! | TCGTGAAAAAATGATGTATT+TGG | - | chr6.4:36991656-36991675 | MS.gene49238:intron | 25.0% |
| ! | TTATCAGTTACAACTTTGAA+CGG | + | chr6.4:36992802-36992821 | None:intergenic | 25.0% |
| ! | TTTCCCATTTAATTAAGCAA+TGG | - | chr6.4:36993280-36993299 | MS.gene49238:intron | 25.0% |
| ! | TTTGAAAGTGATCAATTTAC+AGG | - | chr6.4:36991434-36991453 | MS.gene49238:CDS | 25.0% |
| !! | ATGTATATACTTGAGTTTTG+AGG | - | chr6.4:36991739-36991758 | MS.gene49238:CDS | 25.0% |
| !! | ATTTCACAGGAAATTTTAGA+CGG | - | chr6.4:36993090-36993109 | MS.gene49238:intron | 25.0% |
| !! | ATTTTATGCAGTTCATAGAA+GGG | + | chr6.4:36993047-36993066 | None:intergenic | 25.0% |
| !! | CACGAGTATATTCTAAATTT+TGG | + | chr6.4:36989934-36989953 | None:intergenic | 25.0% |
| !! | TAACCAATCTTTTACAAAGT+CGG | - | chr6.4:36992082-36992101 | MS.gene49238:CDS | 25.0% |
| !! | TATTTTATGCAGTTCATAGA+AGG | + | chr6.4:36993048-36993067 | None:intergenic | 25.0% |
| !!! | ATACACTTATTAGCTTTTTG+CGG | + | chr6.4:36992054-36992073 | None:intergenic | 25.0% |
| !!! | ATTCCTTCTCATTGATTTAA+AGG | - | chr6.4:36990973-36990992 | MS.gene49238:intron | 25.0% |
| !!! | CAACATACTTTCTACTTTTT+GGG | + | chr6.4:36990420-36990439 | None:intergenic | 25.0% |
| !!! | TTCACATTTTAGGTAAGAAT+CGG | - | chr6.4:36989571-36989590 | MS.gene49238:intron | 25.0% |
| AAAAGTTTGAAGGATGAGTT+CGG | - | chr6.4:36993129-36993148 | MS.gene49238:intron | 30.0% | |
| AAAATTGGAAGCAATCAGAA+TGG | - | chr6.4:36991931-36991950 | MS.gene49238:CDS | 30.0% | |
| AATAGTAATTGGTACTGTGT+AGG | - | chr6.4:36992968-36992987 | MS.gene49238:intron | 30.0% | |
| ACAATGCTATGAAGTTAGAA+AGG | - | chr6.4:36990575-36990594 | MS.gene49238:intron | 30.0% | |
| ACTTGATATTAAGCCATTTC+TGG | - | chr6.4:36992633-36992652 | MS.gene49238:CDS | 30.0% | |
| AGAAAATAAAAGCAATCGAG+TGG | - | chr6.4:36992734-36992753 | MS.gene49238:intron | 30.0% | |
| ATAGTAATTGGTACTGTGTA+GGG | - | chr6.4:36992969-36992988 | MS.gene49238:intron | 30.0% | |
| ATATACTCGTGAATCTGATT+TGG | - | chr6.4:36989943-36989962 | MS.gene49238:CDS | 30.0% | |
| ATGAGAAGGAATACCAATAT+TGG | + | chr6.4:36990965-36990984 | None:intergenic | 30.0% | |
| ATGAGTTGTTTGTATATCCA+TGG | - | chr6.4:36990359-36990378 | MS.gene49238:intron | 30.0% | |
| ATGTGAAAATTGGTAGAATC+GGG | - | chr6.4:36992476-36992495 | MS.gene49238:CDS | 30.0% | |
| ATTTGATACAAAAGACCGAA+TGG | + | chr6.4:36991530-36991549 | None:intergenic | 30.0% | |
| CAGTTCTATTAAGACAATGT+TGG | - | chr6.4:36992893-36992912 | MS.gene49238:intron | 30.0% | |
| CATCCTAGTTTCTATATCTA+AGG | - | chr6.4:36992328-36992347 | MS.gene49238:CDS | 30.0% | |
| CCAAATTCAACAATTGCAAA+GGG | + | chr6.4:36990535-36990554 | None:intergenic | 30.0% | |
| CTATTGTTTAGCAACTTCTT+TGG | - | chr6.4:36989876-36989895 | MS.gene49238:CDS | 30.0% | |
| CTTCTTCTCAAAATATAGCT+TGG | + | chr6.4:36991291-36991310 | None:intergenic | 30.0% | |
| CTTGAAAGATGATTACTACA+AGG | - | chr6.4:36989994-36990013 | MS.gene49238:CDS | 30.0% | |
| CTTGTTAAGAATGTTGCTAA+GGG | - | chr6.4:36990301-36990320 | MS.gene49238:intron | 30.0% | |
| GATGCTTGAACATTTCAATA+AGG | - | chr6.4:36990912-36990931 | MS.gene49238:intron | 30.0% | |
| GTGTCTGAACAAAAATCATA+AGG | - | chr6.4:36989750-36989769 | MS.gene49238:intron | 30.0% | |
| GTTTCATTCTTTATTCTGCT+CGG | - | chr6.4:36989332-36989351 | MS.gene49238:CDS | 30.0% | |
| TATGATATCGAGGATATAGT+TGG | - | chr6.4:36990697-36990716 | MS.gene49238:CDS | 30.0% | |
| TCACCTTTAAATCAATGAGA+AGG | + | chr6.4:36990979-36990998 | None:intergenic | 30.0% | |
| TCCAAATTCAACAATTGCAA+AGG | + | chr6.4:36990536-36990555 | None:intergenic | 30.0% | |
| TGAAAAGCTGAAAAGTTTGA+AGG | - | chr6.4:36993119-36993138 | MS.gene49238:intron | 30.0% | |
| TTTCTAACTTCATAGCATTG+TGG | + | chr6.4:36990576-36990595 | None:intergenic | 30.0% | |
| TTTCTCATATCGTTTCATAC+TGG | - | chr6.4:36989639-36989658 | MS.gene49238:intron | 30.0% | |
| TTTGCAATTGTTGAATTTGG+AGG | - | chr6.4:36990535-36990554 | MS.gene49238:intron | 30.0% | |
| ! | AACCAATCTTTTACAAAGTC+GGG | - | chr6.4:36992083-36992102 | MS.gene49238:CDS | 30.0% |
| ! | AAGAAGCAGGTAATGTATTT+TGG | - | chr6.4:36991305-36991324 | MS.gene49238:intron | 30.0% |
| ! | ACTTGTTAAGAATGTTGCTA+AGG | - | chr6.4:36990300-36990319 | MS.gene49238:intron | 30.0% |
| ! | TCGTTGGTTAATGTGAATTT+GGG | - | chr6.4:36990325-36990344 | MS.gene49238:intron | 30.0% |
| ! | TTCGTTGGTTAATGTGAATT+TGG | - | chr6.4:36990324-36990343 | MS.gene49238:intron | 30.0% |
| !! | ATTGTTTGTTCATAGTGGAT+TGG | - | chr6.4:36992559-36992578 | MS.gene49238:CDS | 30.0% |
| !! | GAATTTTAAAGAAGGAAGGA+AGG | - | chr6.4:36993239-36993258 | MS.gene49238:intron | 30.0% |
| !! | GCAACATACTTTCTACTTTT+TGG | + | chr6.4:36990421-36990440 | None:intergenic | 30.0% |
| !! | GGAATCTTATTTAAGTTGCT+TGG | - | chr6.4:36992247-36992266 | MS.gene49238:CDS | 30.0% |
| !! | TCTGGAATTTTAAAGAAGGA+AGG | - | chr6.4:36993235-36993254 | MS.gene49238:intron | 30.0% |
| !! | TCTTTAAAATTCCAGAGTTC+CGG | + | chr6.4:36993231-36993250 | None:intergenic | 30.0% |
| !! | TTGTTGTTTACAGAATGAGA+TGG | - | chr6.4:36991611-36991630 | MS.gene49238:intron | 30.0% |
| !! | TTTTTCAAAATGACCATCCA+TGG | + | chr6.4:36990379-36990398 | None:intergenic | 30.0% |
| !!! | GAACTCTGGAATTTTAAAGA+AGG | - | chr6.4:36993231-36993250 | MS.gene49238:intron | 30.0% |
| !!! | TACACTTATTAGCTTTTTGC+GGG | + | chr6.4:36992053-36992072 | None:intergenic | 30.0% |
| AAAAGGAAGAGGAATTAGAG+GGG | - | chr6.4:36991963-36991982 | MS.gene49238:CDS | 35.0% | |
| AAAGAGGAGCTGATTATGAA+AGG | - | chr6.4:36990460-36990479 | MS.gene49238:intron | 35.0% | |
| AAAGCTGAAGACCAATGAAT+TGG | - | chr6.4:36990822-36990841 | MS.gene49238:CDS | 35.0% | |
| AAAGTTTGAAGGATGAGTTC+GGG | - | chr6.4:36993130-36993149 | MS.gene49238:intron | 35.0% | |
| AAGAGGAGCTGATTATGAAA+GGG | - | chr6.4:36990461-36990480 | MS.gene49238:intron | 35.0% | |
| AATGCTGCATTATATGCGTT+AGG | + | chr6.4:36992931-36992950 | None:intergenic | 35.0% | |
| ACTGTGTTAAAGATCCAAGT+TGG | - | chr6.4:36992773-36992792 | MS.gene49238:intron | 35.0% | |
| AGATAGACTATTTGGTTGGA+TGG | - | chr6.4:36990660-36990679 | MS.gene49238:CDS | 35.0% | |
| ATCCCGACTTTGTAAAAGAT+TGG | + | chr6.4:36992088-36992107 | None:intergenic | 35.0% | |
| ATGCTGCATTATATGCGTTA+GGG | + | chr6.4:36992930-36992949 | None:intergenic | 35.0% | |
| CAAACTTATATCCCGTGAAA+AGG | - | chr6.4:36991226-36991245 | MS.gene49238:intron | 35.0% | |
| CATTAGAAATCAGCAAGATG+CGG | - | chr6.4:36991126-36991145 | MS.gene49238:intron | 35.0% | |
| CCCTTTGCAATTGTTGAATT+TGG | - | chr6.4:36990532-36990551 | MS.gene49238:intron | 35.0% | |
| CTAACAACACTCTTTGTGAT+TGG | + | chr6.4:36991489-36991508 | None:intergenic | 35.0% | |
| CTCTAATGTGATTCATTACC+TGG | + | chr6.4:36991889-36991908 | None:intergenic | 35.0% | |
| GAAAAGGAAGAGGAATTAGA+GGG | - | chr6.4:36991962-36991981 | MS.gene49238:CDS | 35.0% | |
| GACTAAGAGAAAACTTTCAG+AGG | - | chr6.4:36992708-36992727 | MS.gene49238:CDS | 35.0% | |
| GGAAAAAGGGGATTTGAAAA+CGG | - | chr6.4:36990732-36990751 | MS.gene49238:CDS | 35.0% | |
| GGATCCAACGAAAATTAAAG+AGG | - | chr6.4:36990444-36990463 | MS.gene49238:intron | 35.0% | |
| GTATTTGGCAGAAGAACATA+AGG | - | chr6.4:36991671-36991690 | MS.gene49238:intron | 35.0% | |
| GTTGTTTGTATATCCATGGA+TGG | - | chr6.4:36990363-36990382 | MS.gene49238:intron | 35.0% | |
| TCACAAGAAAATTCATGACC+TGG | - | chr6.4:36991802-36991821 | MS.gene49238:CDS | 35.0% | |
| TGATAAAGAAGGAAACTCCA+AGG | - | chr6.4:36992816-36992835 | MS.gene49238:intron | 35.0% | |
| TGCTGTTGTTAGCACTTATT+TGG | - | chr6.4:36993009-36993028 | MS.gene49238:intron | 35.0% | |
| TGTTAGCATTCCTTACTCTA+TGG | - | chr6.4:36991503-36991522 | MS.gene49238:CDS | 35.0% | |
| TGTTGTCTGTTCCAATTCAT+TGG | + | chr6.4:36990836-36990855 | None:intergenic | 35.0% | |
| TTAAATGAGTACAACCCTAG+TGG | - | chr6.4:36993192-36993211 | MS.gene49238:intron | 35.0% | |
| TTGGATGTTGCAGAAAGAAA+AGG | - | chr6.4:36991772-36991791 | MS.gene49238:CDS | 35.0% | |
| ! | AAGTAGAAAGTATGTTGCGA+AGG | - | chr6.4:36990423-36990442 | MS.gene49238:intron | 35.0% |
| ! | AGCTATGGTGATGTTAAAGT+TGG | - | chr6.4:36990181-36990200 | MS.gene49238:intron | 35.0% |
| ! | AGTCCTTGTTGTAGCAAAAT+GGG | + | chr6.4:36990054-36990073 | None:intergenic | 35.0% |
| ! | ATAGCTTGAGTGTTGTTCTT+TGG | + | chr6.4:36992589-36992608 | None:intergenic | 35.0% |
| ! | ATCTTTTACAAAGTCGGGAT+AGG | - | chr6.4:36992088-36992107 | MS.gene49238:CDS | 35.0% |
| ! | TAGCTTGAGTGTTGTTCTTT+GGG | + | chr6.4:36992588-36992607 | None:intergenic | 35.0% |
| ! | TAGTCCTTGTTGTAGCAAAA+TGG | + | chr6.4:36990055-36990074 | None:intergenic | 35.0% |
| ! | TTTTCAAATCCCCTTTTTCC+TGG | + | chr6.4:36990732-36990751 | None:intergenic | 35.0% |
| !! | AGCTCCTCTTTAATTTTCGT+TGG | + | chr6.4:36990451-36990470 | None:intergenic | 35.0% |
| !! | GCTATATTTTGAGAAGAAGC+AGG | - | chr6.4:36991292-36991311 | MS.gene49238:intron | 35.0% |
| !! | GTATCAGGAGAAAGTATCTA+AGG | - | chr6.4:36991163-36991182 | MS.gene49238:intron | 35.0% |
| !! | TGCAAAACAAGCATTGGAAT+TGG | - | chr6.4:36991838-36991857 | MS.gene49238:CDS | 35.0% |
| !! | TTCATTGGTCTTCAGCTTTA+AGG | + | chr6.4:36990821-36990840 | None:intergenic | 35.0% |
| !!! | TTGAGTTTTGAGGACTCTTT+TGG | - | chr6.4:36991749-36991768 | MS.gene49238:CDS | 35.0% |
| AAAATTCATGACCTGGAGAG+AGG | - | chr6.4:36991809-36991828 | MS.gene49238:CDS | 40.0% | |
| AAACAAGCTTGTCTCTGGTT+TGG | - | chr6.4:36990789-36990808 | MS.gene49238:CDS | 40.0% | |
| AAAGCAAACAAGCTTGTCTC+TGG | - | chr6.4:36990784-36990803 | MS.gene49238:CDS | 40.0% | |
| AAAGGAAGAGGAATTAGAGG+GGG | - | chr6.4:36991964-36991983 | MS.gene49238:CDS | 40.0% | |
| AAATTCCAGAGTTCCGGTAT+TGG | + | chr6.4:36993225-36993244 | None:intergenic | 40.0% | |
| AACAGCCAATGCAAAACGTT+CGG | - | chr6.4:36992299-36992318 | MS.gene49238:CDS | 40.0% | |
| AAGTTTGAAGGATGAGTTCG+GGG | - | chr6.4:36993131-36993150 | MS.gene49238:intron | 40.0% | |
| AATCAGGCGAGGTTTATGAA+AGG | - | chr6.4:36989597-36989616 | MS.gene49238:intron | 40.0% | |
| AATTCCAGAGTTCCGGTATT+GGG | + | chr6.4:36993224-36993243 | None:intergenic | 40.0% | |
| ACTGGATGCAAAACAAGCAT+TGG | - | chr6.4:36991832-36991851 | MS.gene49238:CDS | 40.0% | |
| AGGTAAGAATCGGTAGAATC+AGG | - | chr6.4:36989581-36989600 | MS.gene49238:intron | 40.0% | |
| CAAAGGGTAATTGTCCATGA+AGG | + | chr6.4:36990519-36990538 | None:intergenic | 40.0% | |
| CACAGTGCAGTAACTTTCAT+CGG | + | chr6.4:36990493-36990512 | None:intergenic | 40.0% | |
| CTGTTTGCATTCAAAGACGA+TGG | - | chr6.4:36989532-36989551 | MS.gene49238:CDS | 40.0% | |
| GACAACAAGCAAACATCATG+AGG | - | chr6.4:36990849-36990868 | MS.gene49238:CDS | 40.0% | |
| GACTTATCATTACGAACAGC+AGG | + | chr6.4:36990220-36990239 | None:intergenic | 40.0% | |
| GAGGAGATAGACTATTTGGT+TGG | - | chr6.4:36990656-36990675 | MS.gene49238:CDS | 40.0% | |
| GGAAAAGGAAGAGGAATTAG+AGG | - | chr6.4:36991961-36991980 | MS.gene49238:CDS | 40.0% | |
| GGAAGATCTTCAACAAACAC+TGG | - | chr6.4:36991988-36992007 | MS.gene49238:CDS | 40.0% | |
| GTTTGCTTTCCTATTGTCCT+CGG | + | chr6.4:36990773-36990792 | None:intergenic | 40.0% | |
| TCCTTACTCTATGGACCATT+CGG | - | chr6.4:36991512-36991531 | MS.gene49238:intron | 40.0% | |
| TCGTGATGACTATGATATCG+AGG | - | chr6.4:36990687-36990706 | MS.gene49238:CDS | 40.0% | |
| TGCTGCATTATATGCGTTAG+GGG | + | chr6.4:36992929-36992948 | None:intergenic | 40.0% | |
| TGTTGAATTTGGAGGACAGT+GGG | - | chr6.4:36990543-36990562 | MS.gene49238:intron | 40.0% | |
| TTCGCGAAGTTATTGTACCT+TGG | + | chr6.4:36992836-36992855 | None:intergenic | 40.0% | |
| TTGCTCCATCACTTTCCTTA+GGG | + | chr6.4:36990884-36990903 | None:intergenic | 40.0% | |
| TTGGAGATTGAACAGCTGAA+AGG | - | chr6.4:36991857-36991876 | MS.gene49238:CDS | 40.0% | |
| TTGTTGAATTTGGAGGACAG+TGG | - | chr6.4:36990542-36990561 | MS.gene49238:intron | 40.0% | |
| TTTGCTCCATCACTTTCCTT+AGG | + | chr6.4:36990885-36990904 | None:intergenic | 40.0% | |
| ! | AAACACCGAACGTTTTGCAT+TGG | + | chr6.4:36992307-36992326 | None:intergenic | 40.0% |
| ! | CTTTTGCAGATCCTTTTCAC+GGG | + | chr6.4:36991240-36991259 | None:intergenic | 40.0% |
| ! | GCTTTTGCAGATCCTTTTCA+CGG | + | chr6.4:36991241-36991260 | None:intergenic | 40.0% |
| ! | TCAACAAACACTGGTTGTTC+AGG | - | chr6.4:36991997-36992016 | MS.gene49238:CDS | 40.0% |
| ! | TTGCCCATTTTGCTACAACA+AGG | - | chr6.4:36990048-36990067 | MS.gene49238:CDS | 40.0% |
| !! | CGCATCTTGCTGATTTCTAA+TGG | + | chr6.4:36991128-36991147 | None:intergenic | 40.0% |
| !!! | GTTTTGAGGACTCTTTTGGT+TGG | - | chr6.4:36991753-36991772 | MS.gene49238:CDS | 40.0% |
| AACAAGCAACCACGTGATTC+AGG | + | chr6.4:36992384-36992403 | None:intergenic | 45.0% | |
| AACCACGTGATTCAGGTGAA+AGG | + | chr6.4:36992377-36992396 | None:intergenic | 45.0% | |
| ACCGAATGGTCCATAGAGTA+AGG | + | chr6.4:36991516-36991535 | None:intergenic | 45.0% | |
| ACTTTGAACGGATGCCAACT+TGG | + | chr6.4:36992790-36992809 | None:intergenic | 45.0% | |
| AGACACACGTCCACAATTGT+GGG | - | chr6.4:36990097-36990116 | MS.gene49238:intron | 45.0% | |
| AGCGGGATTACTTGGGTTTA+CGG | - | chr6.4:36990623-36990642 | MS.gene49238:CDS | 45.0% | |
| AGTGTCCCTAAGGAAAGTGA+TGG | - | chr6.4:36990876-36990895 | MS.gene49238:intron | 45.0% | |
| ATCCTTTCACCTGAATCACG+TGG | - | chr6.4:36992372-36992391 | MS.gene49238:CDS | 45.0% | |
| ATGAGTACAACCCTAGTGGT+CGG | - | chr6.4:36993196-36993215 | MS.gene49238:intron | 45.0% | |
| ATGCAAGTCACCCACAATTG+TGG | + | chr6.4:36990110-36990129 | None:intergenic | 45.0% | |
| CAAACACCTCCAGGAAAAAG+GGG | - | chr6.4:36990720-36990739 | MS.gene49238:CDS | 45.0% | |
| CAGGTGAAAGGATGTTGCAT+TGG | + | chr6.4:36992365-36992384 | None:intergenic | 45.0% | |
| CGATGAAAGTTACTGCACTG+TGG | - | chr6.4:36990491-36990510 | MS.gene49238:intron | 45.0% | |
| CTCTTAGCTGCTTCCAGAAA+TGG | + | chr6.4:36992649-36992668 | None:intergenic | 45.0% | |
| GAAAAGAAGCCGAGGACAAT+AGG | - | chr6.4:36990761-36990780 | MS.gene49238:CDS | 45.0% | |
| GAATGTTGCTAAGGGTTCGT+TGG | - | chr6.4:36990309-36990328 | MS.gene49238:intron | 45.0% | |
| GAGCGAGGAGATAGACTATT+TGG | - | chr6.4:36990652-36990671 | MS.gene49238:CDS | 45.0% | |
| GCAAACACCTCCAGGAAAAA+GGG | - | chr6.4:36990719-36990738 | MS.gene49238:CDS | 45.0% | |
| GGATCATGAAAATGCCAGTC+TGG | - | chr6.4:36991184-36991203 | MS.gene49238:intron | 45.0% | |
| GGGGATTTGAAAACGGTTTC+TGG | - | chr6.4:36990739-36990758 | MS.gene49238:CDS | 45.0% | |
| TAGCAGAACACTGTGGTAAG+CGG | - | chr6.4:36990605-36990624 | MS.gene49238:CDS | 45.0% | |
| TATAGTTGGCAAACACCTCC+AGG | - | chr6.4:36990711-36990730 | MS.gene49238:CDS | 45.0% | |
| TCACTAGCAGTACTAACAGC+AGG | + | chr6.4:36990244-36990263 | None:intergenic | 45.0% | |
| TGCAGTAGCTACAACTCTGA+AGG | - | chr6.4:36993167-36993186 | MS.gene49238:intron | 45.0% | |
| TGTGGTAAGCGGGATTACTT+GGG | - | chr6.4:36990616-36990635 | MS.gene49238:CDS | 45.0% | |
| TTACTTGGGTTTACGGAAGC+AGG | - | chr6.4:36990630-36990649 | MS.gene49238:CDS | 45.0% | |
| ! | AGCTTTCTAGCAGAACACTG+TGG | - | chr6.4:36990598-36990617 | MS.gene49238:CDS | 45.0% |
| ! | TCAAATCCCCTTTTTCCTGG+AGG | + | chr6.4:36990729-36990748 | None:intergenic | 45.0% |
| AAGGAAGGCTTCGTTGAAGG+AGG | - | chr6.4:36993254-36993273 | MS.gene49238:intron | 50.0% | |
| AATCGAGTGGTGCTCGAAGT+GGG | - | chr6.4:36992747-36992766 | MS.gene49238:intron | 50.0% | |
| ACAGCTGAAAGGAGCTTTCC+AGG | - | chr6.4:36991868-36991887 | MS.gene49238:CDS | 50.0% | |
| ACTGCACTGTGGAACCTTCA+TGG | - | chr6.4:36990502-36990521 | MS.gene49238:intron | 50.0% | |
| AGAAATCAGCAAGATGCGGC+AGG | - | chr6.4:36991130-36991149 | MS.gene49238:intron | 50.0% | |
| AGAATCGGTAGAATCAGGCG+AGG | - | chr6.4:36989586-36989605 | MS.gene49238:intron | 50.0% | |
| AGCAATCAGAATGGAGCTGC+AGG | - | chr6.4:36991940-36991959 | MS.gene49238:CDS | 50.0% | |
| AGCAGAACACTGTGGTAAGC+GGG | - | chr6.4:36990606-36990625 | MS.gene49238:CDS | 50.0% | |
| AGGAAGGAAGGCTTCGTTGA+AGG | - | chr6.4:36993251-36993270 | MS.gene49238:intron | 50.0% | |
| AGGAAGGCTTCGTTGAAGGA+GGG | - | chr6.4:36993255-36993274 | MS.gene49238:intron | 50.0% | |
| CAGAATGGAGCTGCAGGAAA+AGG | - | chr6.4:36991946-36991965 | MS.gene49238:CDS | 50.0% | |
| CTGTGGTAAGCGGGATTACT+TGG | - | chr6.4:36990615-36990634 | MS.gene49238:CDS | 50.0% | |
| GAATTTGGAGGACAGTGGGA+TGG | - | chr6.4:36990547-36990566 | MS.gene49238:intron | 50.0% | |
| GAGACACACGTCCACAATTG+TGG | - | chr6.4:36990096-36990115 | MS.gene49238:intron | 50.0% | |
| GGCAAACACCTCCAGGAAAA+AGG | - | chr6.4:36990718-36990737 | MS.gene49238:CDS | 50.0% | |
| GGCAATAGCAGAGCAGCAAA+AGG | - | chr6.4:36991632-36991651 | MS.gene49238:intron | 50.0% | |
| TAGTGGTCGGTACCCAATAC+CGG | - | chr6.4:36993209-36993228 | MS.gene49238:intron | 50.0% | |
| ! | GGTTTCTGGAAAAGAAGCCG+AGG | - | chr6.4:36990753-36990772 | MS.gene49238:CDS | 50.0% |
| ! | TGAAAATGCCAGTCTGGAGC+TGG | - | chr6.4:36991190-36991209 | MS.gene49238:intron | 50.0% |
| ! | TGTGGGTGACTTGCATGAGA+CGG | - | chr6.4:36990114-36990133 | MS.gene49238:intron | 50.0% |
| !! | ATGAGGCGAAAGTGTCCCTA+AGG | - | chr6.4:36990866-36990885 | MS.gene49238:intron | 50.0% |
| !! | GTATTGGGTACCGACCACTA+GGG | + | chr6.4:36993209-36993228 | None:intergenic | 50.0% |
| CAATCGAGTGGTGCTCGAAG+TGG | - | chr6.4:36992746-36992765 | MS.gene49238:intron | 55.0% | |
| GAAGGATGAGTTCGGGGATG+AGG | - | chr6.4:36993137-36993156 | MS.gene49238:intron | 55.0% | |
| GGAAGAGGAATTAGAGGGGG+TGG | - | chr6.4:36991967-36991986 | MS.gene49238:CDS | 55.0% | |
| GGAGCTGCAGGAAAAGGAAG+AGG | - | chr6.4:36991952-36991971 | MS.gene49238:CDS | 55.0% | |
| GGTACCCAATACCGGAACTC+TGG | - | chr6.4:36993217-36993236 | MS.gene49238:intron | 55.0% | |
| TCATGACCTGGAGAGAGGAC+TGG | - | chr6.4:36991814-36991833 | MS.gene49238:CDS | 55.0% | |
| TTGCATCCAGTCCTCTCTCC+AGG | + | chr6.4:36991823-36991842 | None:intergenic | 55.0% | |
| ! | CCAGTCTGGAGCTGGAAGTT+CGG | - | chr6.4:36991198-36991217 | MS.gene49238:intron | 55.0% |
| !! | GGTATTGGGTACCGACCACT+AGG | + | chr6.4:36993210-36993229 | None:intergenic | 55.0% |
| CCGAACTTCCAGCTCCAGAC+TGG | + | chr6.4:36991201-36991220 | None:intergenic | 60.0% | |
| GCAGGCTGAACGCGAGTATC+AGG | - | chr6.4:36991148-36991167 | MS.gene49238:intron | 60.0% | |
| GGTTTACGGAAGCAGGAGCG+AGG | - | chr6.4:36990637-36990656 | MS.gene49238:CDS | 60.0% | |
| ! | GTCTGGAGCTGGAAGTTCGG+AGG | - | chr6.4:36991201-36991220 | MS.gene49238:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 36989330 | 36993332 | 36989330 | ID=MS.gene49238 |
| chr6.4 | mRNA | 36989330 | 36993332 | 36989330 | ID=MS.gene49238.t1;Parent=MS.gene49238 |
| chr6.4 | exon | 36993309 | 36993332 | 36993309 | ID=MS.gene49238.t1.exon1;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36993309 | 36993332 | 36993309 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| chr6.4 | exon | 36991728 | 36992736 | 36991728 | ID=MS.gene49238.t1.exon2;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36991728 | 36992736 | 36991728 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| chr6.4 | exon | 36991349 | 36991530 | 36991349 | ID=MS.gene49238.t1.exon3;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36991349 | 36991530 | 36991349 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| chr6.4 | exon | 36990593 | 36990877 | 36990593 | ID=MS.gene49238.t1.exon4;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36990593 | 36990877 | 36990593 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| chr6.4 | exon | 36989825 | 36990088 | 36989825 | ID=MS.gene49238.t1.exon5;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36989825 | 36990088 | 36989825 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| chr6.4 | exon | 36989330 | 36989563 | 36989330 | ID=MS.gene49238.t1.exon6;Parent=MS.gene49238.t1 |
| chr6.4 | CDS | 36989330 | 36989563 | 36989330 | ID=cds.MS.gene49238.t1;Parent=MS.gene49238.t1 |
| Gene Sequence |
| Protein sequence |
