AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49273


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49273.t1 MTR_4g103680 98.117 478 9 0 1 478 1 478 0.0 964
MS.gene49273.t1 MTR_5g042880 93.750 480 28 2 1 478 1 480 0.0 926
MS.gene49273.t1 MTR_3g088970 77.662 479 104 2 1 478 1 477 0.0 790
MS.gene49273.t1 MTR_3g088940 77.143 140 32 0 296 435 10 149 4.79e-75 233
MS.gene49273.t1 MTR_3g088950 81.159 69 12 1 227 295 512 579 1.03e-32 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49273.t1 AT4G24830 86.792 424 55 1 53 476 70 492 0.0 773
MS.gene49273.t1 AT4G24830 77.594 424 50 2 53 476 70 448 0.0 673

Find 146 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTATTTCTTGCAGATATT+TGG 0.140911 8.2:+20629042 MS.gene49273:intron
ACACCAACTCTGCATATTTA+AGG 0.172014 8.2:-20629321 None:intergenic
TCAAGTCCTTTACGACTAAT+TGG 0.184464 8.2:-20627007 None:intergenic
TCTTGCAGATATTTGGAAAT+TGG 0.199883 8.2:+20629049 MS.gene49273:intron
GTCACTAAAGGGTGATATTT+TGG 0.204335 8.2:+20628587 MS.gene49273:intron
ACGTAGCCCGCTACCCTTCT+TGG 0.260980 8.2:-20626210 None:intergenic
CAGAGAATATTCTGTTTAAT+CGG 0.269629 8.2:+20625449 MS.gene49273:intron
CGAAGTACCTTTGCAATTAC+AGG 0.273791 8.2:-20627122 None:intergenic
CATCATGTACATATCCTTCT+TGG 0.285689 8.2:-20628628 None:intergenic
ACTCCCGTGCTGCTTTAAAA+AGG 0.317154 8.2:-20629246 None:intergenic
TCTTGCCTATACAGGCTAAA+AGG 0.329004 8.2:-20629475 None:intergenic
CAAGTACTTCCTCTCATAAA+TGG 0.334381 8.2:-20627078 None:intergenic
CATATAGGGTATAAAAGAAT+TGG 0.336128 8.2:+20626947 MS.gene49273:intron
AAAGCACAACGTTCCCGTTC+CGG 0.350464 8.2:+20627693 MS.gene49273:CDS
GACTAATTGGGAGGCTCCAC+TGG 0.351872 8.2:-20626994 None:intergenic
TTGGAAATTGGTATTGAGTC+TGG 0.354536 8.2:+20629061 MS.gene49273:CDS
TAACCCATGTTCATTCAAAA+AGG 0.356247 8.2:+20625483 MS.gene49273:CDS
CCCGCTACCCTTCTTGGCTT+CGG 0.371984 8.2:-20626204 None:intergenic
AGCATTGCCCGGACCTTCAT+TGG 0.372630 8.2:-20629571 None:intergenic
TCCTTCTTGGGTTCATTAGC+CGG 0.373034 8.2:-20628615 None:intergenic
TGGAGGGAGTGGGATATTAC+AGG 0.373658 8.2:+20627643 MS.gene49273:CDS
ATATTCTGTTTAATCGGGTT+TGG 0.378824 8.2:+20625455 MS.gene49273:CDS
TATAAAAGAATTGGACGGTT+TGG 0.385364 8.2:+20626956 MS.gene49273:CDS
GGTCCGGGCAATGCTTGAAC+AGG 0.385668 8.2:+20629579 MS.gene49273:CDS
TGGTGCTGCAGAGAGAATTA+TGG 0.387537 8.2:+20626727 MS.gene49273:intron
GCTACGTGGAAAATTGAATA+AGG 0.387753 8.2:+20626226 MS.gene49273:CDS
GGAGCCACAATGTTTAGCTT+GGG 0.388294 8.2:-20627619 None:intergenic
GTTCCTATCCCTGCTATAGA+TGG 0.391675 8.2:-20627728 None:intergenic
GCTTGATCTGGAGCATCCTC+CGG 0.393049 8.2:-20628660 None:intergenic
CGCAGTAATCTTCTGCATAA+AGG 0.397397 8.2:-20629386 None:intergenic
AAGATTACTGCGACCACAAC+AGG 0.398632 8.2:+20629397 MS.gene49273:CDS
CAAGTCCTTTACGACTAATT+GGG 0.405173 8.2:-20627006 None:intergenic
ATGAGATATCTTGCCTATAC+AGG 0.405421 8.2:-20629483 None:intergenic
GGACTTCCCGTTTCACTCAA+TGG 0.408949 8.2:+20629082 MS.gene49273:CDS
CACCAACTCTGCATATTTAA+GGG 0.411511 8.2:-20629320 None:intergenic
GTCGGTGCTGGTAGACTTCA+AGG 0.424838 8.2:+20625612 MS.gene49273:CDS
GAAGCTTACTCTGCTTGATC+TGG 0.429139 8.2:-20628672 None:intergenic
ATAGGTGGAAAGCACGGAAT+TGG 0.430346 8.2:+20629148 MS.gene49273:CDS
ACGGTCTTCCAATGAAGGTC+CGG 0.434028 8.2:+20629563 MS.gene49273:CDS
TTCCTTTCCCTGTACACCCA+TGG 0.439674 8.2:-20627459 None:intergenic
ACTCCTTCCCTTCATGCAAC+AGG 0.446702 8.2:+20625260 MS.gene49273:CDS
AGAGAATATTCTGTTTAATC+GGG 0.449216 8.2:+20625450 MS.gene49273:intron
GTATTTCCTTGCTTGCGTGC+TGG 0.449287 8.2:+20627053 MS.gene49273:CDS
AGTTGGTGTATGCTGGTAGA+TGG 0.450417 8.2:+20629335 MS.gene49273:CDS
AGCTCAGCGAGTAAAGTTGC+TGG 0.451716 8.2:-20629118 None:intergenic
TATGAGAGGAAGTACTTGCT+TGG 0.452415 8.2:+20627083 MS.gene49273:CDS
GCTGTCTCCCATGGGTGTAC+AGG 0.452794 8.2:+20627451 MS.gene49273:CDS
CTTGATCTGGAGCATCCTCC+GGG 0.455389 8.2:-20628659 None:intergenic
ATGAGAGGAAGTACTTGCTT+GGG 0.457223 8.2:+20627084 MS.gene49273:CDS
TGGAGCCACAATGTTTAGCT+TGG 0.467832 8.2:-20627620 None:intergenic
GGAGCTGATGCTGTCTCCCA+TGG 0.468989 8.2:+20627442 MS.gene49273:CDS
ATGGTTGAGAATAGGCTTGT+AGG 0.469420 8.2:+20629181 MS.gene49273:CDS
AAAGGTTCTGTTACTGTAGC+AGG 0.471477 8.2:+20629442 MS.gene49273:CDS
ATCATGTACATATCCTTCTT+GGG 0.473196 8.2:-20628627 None:intergenic
CTCGCTGAGCTCAATGAGAT+AGG 0.474365 8.2:+20629130 MS.gene49273:CDS
GTCTTGCCATTGAGTGAAAC+GGG 0.476700 8.2:-20629088 None:intergenic
CGTCTTGCCATTGAGTGAAA+CGG 0.482531 8.2:-20629089 None:intergenic
GCTTTACGGTCTTCCAATGA+AGG 0.484315 8.2:+20629558 MS.gene49273:CDS
GCAAGATATCTCATCATTTG+AGG 0.485368 8.2:+20629492 MS.gene49273:CDS
TTGTGGCTCCATGGAGGGAG+TGG 0.488472 8.2:+20627632 MS.gene49273:CDS
TACAGGGAAAGGAAATGATC+AGG 0.502638 8.2:+20627468 MS.gene49273:CDS
GTGTGCTTCACTGCTGATGT+TGG 0.505167 8.2:+20626760 MS.gene49273:CDS
CGGTCTTCCAATGAAGGTCC+GGG 0.505856 8.2:+20629564 MS.gene49273:CDS
TCCTTTCCCTGTACACCCAT+GGG 0.506646 8.2:-20627458 None:intergenic
GGCAGTATCACGCAGTCATA+CGG 0.506933 8.2:+20626169 MS.gene49273:CDS
CCTTCTTGGGTTCATTAGCC+GGG 0.507887 8.2:-20628614 None:intergenic
ATTAGTCGTAAAGGACTTGA+AGG 0.509453 8.2:+20627010 MS.gene49273:CDS
GTTGTACTTGCTTACAGTGG+TGG 0.512883 8.2:+20626248 MS.gene49273:CDS
TTCATGACATGCAGTTGTAA+AGG 0.514606 8.2:+20626148 MS.gene49273:intron
TACCTTTGCAATTACAGGAC+GGG 0.515868 8.2:-20627117 None:intergenic
TATTCTCAACCATGTCGATC+CGG 0.516319 8.2:-20629171 None:intergenic
AGCTAAACATTGTGGCTCCA+TGG 0.517704 8.2:+20627623 MS.gene49273:CDS
TCTGTTTAATCGGGTTTGGA+AGG 0.518126 8.2:+20625459 MS.gene49273:CDS
GGATCGACATGGTTGAGAAT+AGG 0.521327 8.2:+20629173 MS.gene49273:CDS
AATGCTTTCAACTGAGCCAT+TGG 0.522346 8.2:-20625212 None:intergenic
CAGTCATTGTCCCATGGTTG+AGG 0.522691 8.2:+20626282 MS.gene49273:CDS
GAGCTGATGCTGTCTCCCAT+GGG 0.524079 8.2:+20627443 MS.gene49273:CDS
CAAGATATCTCATCATTTGA+GGG 0.524808 8.2:+20629493 MS.gene49273:CDS
AGGAGAACCTGTTGCATGAA+GGG 0.528602 8.2:-20625267 None:intergenic
CCAAGAGCTAGTGTCGGTGC+TGG 0.529991 8.2:+20625600 MS.gene49273:CDS
GTAATATCCCACTCCCTCCA+TGG 0.530801 8.2:-20627640 None:intergenic
TGATCCACTTCGTGAGTCGA+TGG 0.531316 8.2:+20629360 MS.gene49273:CDS
CGCGGAGTTTATGAAACTCC+TGG 0.532888 8.2:+20629214 MS.gene49273:CDS
GGCCCTGTTCAAGCATTGCC+CGG 0.533555 8.2:-20629582 None:intergenic
GTGGATGTTGCTAAAGAAGT+TGG 0.533691 8.2:+20627421 MS.gene49273:CDS
AGCCCTTAAATATGCAGAGT+TGG 0.534651 8.2:+20629318 MS.gene49273:CDS
CTGTCTCCCATGGGTGTACA+GGG 0.536193 8.2:+20627452 MS.gene49273:CDS
TCCCATGGGTGTACAGGGAA+AGG 0.539361 8.2:+20627457 MS.gene49273:CDS
AGCCTCCCAATTAGTCGTAA+AGG 0.540721 8.2:+20627001 MS.gene49273:CDS
AATCCATCTATAGCAGGGAT+AGG 0.548987 8.2:+20627725 MS.gene49273:CDS
GTGGAAAGCACGGAATTGGC+CGG 0.550439 8.2:+20629152 MS.gene49273:CDS
TATGATCAAGCTGATGCTGC+TGG 0.551145 8.2:+20629526 MS.gene49273:CDS
CCAGCACCGACACTAGCTCT+TGG 0.552890 8.2:-20625600 None:intergenic
GTACTTGCTTGGGACCTCAA+TGG 0.557948 8.2:+20627094 MS.gene49273:CDS
AAGGAGAACCTGTTGCATGA+AGG 0.558077 8.2:-20625268 None:intergenic
GAGCCACAATGTTTAGCTTG+GGG 0.558250 8.2:-20627618 None:intergenic
ATAGCAGGGATAGGAACCTA+TGG 0.560895 8.2:+20627734 MS.gene49273:CDS
CCCGGCTAATGAACCCAAGA+AGG 0.563898 8.2:+20628614 MS.gene49273:CDS
TCCGAAGCCAAGAAGGGTAG+CGG 0.564921 8.2:+20626203 MS.gene49273:CDS
CCGAAGCCAAGAAGGGTAGC+GGG 0.565040 8.2:+20626204 MS.gene49273:CDS
TCATTGGAAGACCGTAAAGC+CGG 0.568825 8.2:-20629555 None:intergenic
CAAAGTAACAGAACCTGTTG+TGG 0.572279 8.2:-20629410 None:intergenic
TGAAGATTCCGAAGCCAAGA+AGG 0.576232 8.2:+20626196 MS.gene49273:CDS
TATGCAGAGTTGGTGTATGC+TGG 0.582525 8.2:+20629328 MS.gene49273:CDS
CAACATATATACCTCAACCA+TGG 0.584663 8.2:-20626293 None:intergenic
GAACCTGTTGCATGAAGGGA+AGG 0.585609 8.2:-20625263 None:intergenic
GCGTCCATCGACTCACGAAG+TGG 0.588223 8.2:-20629364 None:intergenic
AACATATATACCTCAACCAT+GGG 0.591621 8.2:-20626292 None:intergenic
CGGAATTGGCCGGATCGACA+TGG 0.592013 8.2:+20629162 MS.gene49273:CDS
AAACATTGTGGCTCCATGGA+GGG 0.593118 8.2:+20627627 MS.gene49273:CDS
GTAGTAGCGCATGGATGTGA+AGG 0.597016 8.2:-20625236 None:intergenic
GGCCCGTCCTGTAATTGCAA+AGG 0.597766 8.2:+20627115 MS.gene49273:CDS
ACTTGATCGAGAAACAATAC+AGG 0.598769 8.2:+20629282 MS.gene49273:CDS
CCTCATGGCTAAGATGCCAT+AGG 0.600016 8.2:-20627750 None:intergenic
ATGGCACCAGCACGCAAGCA+AGG 0.605414 8.2:-20627059 None:intergenic
GAAGATTCCGAAGCCAAGAA+GGG 0.607784 8.2:+20626197 MS.gene49273:CDS
AATTACAGGACGGGCCATTG+AGG 0.609012 8.2:-20627108 None:intergenic
TGTGGCTCCATGGAGGGAGT+GGG 0.609883 8.2:+20627633 MS.gene49273:CDS
GAAGGAGTAGTAGTAGCGCA+TGG 0.615736 8.2:-20625245 None:intergenic
ACACATCAGTCATTGTCCCA+TGG 0.619335 8.2:+20626276 MS.gene49273:CDS
GTCCTTTACGACTAATTGGG+AGG 0.620171 8.2:-20627003 None:intergenic
GTTACTTTGAAATTGTACAA+AGG 0.620393 8.2:+20629424 MS.gene49273:CDS
TGCTGACTGGTAGGCCATGG+TGG 0.621627 8.2:+20627402 MS.gene49273:intron
GTACATGATGTCTGTAGACC+CGG 0.626351 8.2:+20628641 MS.gene49273:CDS
GTCCGGGCAATGCTTGAACA+GGG 0.642826 8.2:+20629580 MS.gene49273:CDS
TAGGGTATAAAAGAATTGGA+CGG 0.644179 8.2:+20626951 MS.gene49273:intron
GCTGAGCTCAATGAGATAGG+TGG 0.646043 8.2:+20629133 MS.gene49273:CDS
AATGAGATAGGTGGAAAGCA+CGG 0.647318 8.2:+20629142 MS.gene49273:CDS
TTCTTTAGCAACATCCACCA+TGG 0.653712 8.2:-20627416 None:intergenic
GAGTTTATGAAACTCCTGGT+GGG 0.653894 8.2:+20629218 MS.gene49273:CDS
GGAGTTTATGAAACTCCTGG+TGG 0.659690 8.2:+20629217 MS.gene49273:CDS
AGTCGTAAAGGACTTGAAGG+AGG 0.661011 8.2:+20627013 MS.gene49273:CDS
GAAGCCAAAGCAAAAGCCAG+TGG 0.662975 8.2:+20626978 MS.gene49273:CDS
CTTGTAGGCATGAAGAGCCG+CGG 0.663600 8.2:+20629196 MS.gene49273:CDS
GAACCCCAAGCTAAACATTG+TGG 0.664560 8.2:+20627615 MS.gene49273:CDS
AAGAAGGGTAGCGGGCTACG+TGG 0.672202 8.2:+20626212 MS.gene49273:CDS
TAAACATTGTGGCTCCATGG+AGG 0.674929 8.2:+20627626 MS.gene49273:CDS
AAGGTTGTACTTGCTTACAG+TGG 0.676821 8.2:+20626245 MS.gene49273:CDS
GTACCTTTGCAATTACAGGA+CGG 0.677711 8.2:-20627118 None:intergenic
GTATCACGCAGTCATACGGA+TGG 0.685063 8.2:+20626173 MS.gene49273:CDS
GGAGGGAGTGGGATATTACA+GGG 0.688013 8.2:+20627644 MS.gene49273:CDS
TTGAAACCAAGAGCTAGTGT+CGG 0.691852 8.2:+20625594 MS.gene49273:CDS
GTGCTGGTGCCATTTATGAG+AGG 0.694541 8.2:+20627069 MS.gene49273:CDS
CCTATGGCATCTTAGCCATG+AGG 0.721010 8.2:+20627750 MS.gene49273:CDS
CAGGAGTTTCATAAACTCCG+CGG 0.735124 8.2:-20629213 None:intergenic
CATGATGTCTGTAGACCCGG+AGG 0.809606 8.2:+20628644 MS.gene49273:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATCTTATTTAATGATTT+TGG + chr8.2:20626707-20626726 MS.gene49273:intron 10.0%
!! AACAAAATCAATTTCATATA+GGG + chr8.2:20626933-20626952 MS.gene49273:intron 15.0%
!! AATGTAATGAAAATCAATAA+AGG - chr8.2:20625379-20625398 None:intergenic 15.0%
!! ATGTAATGAAAATCAATAAA+GGG - chr8.2:20625378-20625397 None:intergenic 15.0%
!! ATTAAAGGACAAAATTAATA+AGG - chr8.2:20628078-20628097 None:intergenic 15.0%
!! CAACATATAAAGAATAAAAT+TGG - chr8.2:20625975-20625994 None:intergenic 15.0%
!! TAACAAAATCAATTTCATAT+AGG + chr8.2:20626932-20626951 MS.gene49273:intron 15.0%
!! TAGAAAAATAAAAAAGAACA+AGG - chr8.2:20626319-20626338 None:intergenic 15.0%
!!! ATGTTTTAACTTAAAGAATA+TGG - chr8.2:20625854-20625873 None:intergenic 15.0%
!!! CAATTTTATTCTTTATATGT+TGG + chr8.2:20625973-20625992 MS.gene49273:intron 15.0%
!! AGAACAAATTATACAACAAT+AGG - chr8.2:20626681-20626700 None:intergenic 20.0%
!! ATCTAATCAATATAATCAAC+TGG - chr8.2:20626084-20626103 None:intergenic 20.0%
!! GTTAATGACATTCAAAAAAT+GGG - chr8.2:20625343-20625362 None:intergenic 20.0%
!! GTTATAAGATTGTAAATATC+CGG + chr8.2:20626859-20626878 MS.gene49273:intron 20.0%
!! TCCATTCTTCAAATAATAAT+CGG + chr8.2:20627262-20627281 MS.gene49273:intron 20.0%
!! TCTTTATTCAGAATATACAA+AGG - chr8.2:20626373-20626392 None:intergenic 20.0%
!! TGTTAATGACATTCAAAAAA+TGG - chr8.2:20625344-20625363 None:intergenic 20.0%
!! TTAATGACATTCAAAAAATG+GGG - chr8.2:20625342-20625361 None:intergenic 20.0%
!! TTCCAACAAAAGATAATTAA+AGG - chr8.2:20628093-20628112 None:intergenic 20.0%
!!! ACTAGCATTCTTTAAAAAAA+AGG - chr8.2:20626586-20626605 None:intergenic 20.0%
!!! CTAGCATTCTTTAAAAAAAA+GGG - chr8.2:20626585-20626604 None:intergenic 20.0%
!!! GATTTGTTTGTTTTTTCATT+GGG + chr8.2:20627836-20627855 MS.gene49273:intron 20.0%
!!! TATGAAATTGATTTTGTTAC+CGG - chr8.2:20626931-20626950 None:intergenic 20.0%
!!! TCTTTGAAGGAAAAAAATTA+TGG + chr8.2:20628301-20628320 MS.gene49273:intron 20.0%
!!! TGATTTGTTTGTTTTTTCAT+TGG + chr8.2:20627835-20627854 MS.gene49273:intron 20.0%
!!! TTCTGTTATGCTTTTAAAAA+GGG + chr8.2:20628970-20628989 MS.gene49273:intron 20.0%
!!! TTTAATTATCTTTTGTTGGA+AGG + chr8.2:20628092-20628111 MS.gene49273:intron 20.0%
!!! TTTCTGTTATGCTTTTAAAA+AGG + chr8.2:20628969-20628988 MS.gene49273:intron 20.0%
!!! TTTTATAGACCATTCTTTAA+AGG - chr8.2:20627918-20627937 None:intergenic 20.0%
! AAAAAAATCCATCTATAGCA+GGG + chr8.2:20627720-20627739 MS.gene49273:CDS 25.0%
! AACAATAGGTAACTTCAAAA+TGG - chr8.2:20626667-20626686 None:intergenic 25.0%
! AACAGATAGACAAAATGATA+TGG + chr8.2:20628221-20628240 MS.gene49273:intron 25.0%
! AAGAATATGGTTTCAAATTG+CGG - chr8.2:20625841-20625860 None:intergenic 25.0%
! ACAGATAGACAAAATGATAT+GGG + chr8.2:20628222-20628241 MS.gene49273:intron 25.0%
! ACCGATTATTATTTGAAGAA+TGG - chr8.2:20627266-20627285 None:intergenic 25.0%
! AGAGAATATTCTGTTTAATC+GGG + chr8.2:20625450-20625469 MS.gene49273:intron 25.0%
! ATTCAACTACAAAGAACAAT+AGG - chr8.2:20625902-20625921 None:intergenic 25.0%
! ATTGCATGATTTATAAACCA+TGG + chr8.2:20625677-20625696 MS.gene49273:intron 25.0%
! CAACTACACAGATTAAAAAA+GGG - chr8.2:20625577-20625596 None:intergenic 25.0%
! CAGAGAATATTCTGTTTAAT+CGG + chr8.2:20625449-20625468 MS.gene49273:intron 25.0%
! CATAATTATTCAATAGCATG+TGG + chr8.2:20625871-20625890 MS.gene49273:intron 25.0%
! CATATAGGGTATAAAAGAAT+TGG + chr8.2:20626947-20626966 MS.gene49273:intron 25.0%
! CATTAGACTTAACTATCAAA+CGG - chr8.2:20626108-20626127 None:intergenic 25.0%
! CTAATAGATCTATAGATTCT+GGG + chr8.2:20627978-20627997 MS.gene49273:intron 25.0%
! CTATTAACTAATGATCTGTT+TGG + chr8.2:20628707-20628726 MS.gene49273:intron 25.0%
! CTTTATATGTTGGAAATGAA+TGG + chr8.2:20625983-20626002 MS.gene49273:intron 25.0%
! TCAACTACACAGATTAAAAA+AGG - chr8.2:20625578-20625597 None:intergenic 25.0%
! TCTAATAGATCTATAGATTC+TGG + chr8.2:20627977-20627996 MS.gene49273:intron 25.0%
! TTACAATTACTATGAAGCAA+TGG - chr8.2:20627320-20627339 None:intergenic 25.0%
! TTGAAGCTGTATATATAGTT+GGG - chr8.2:20628948-20628967 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + chr8.2:20628921-20628940 MS.gene49273:intron 25.0%
!! CATTATTTCTTGCAGATATT+TGG + chr8.2:20629042-20629061 MS.gene49273:intron 25.0%
!! GTCCTTTAATTATCTTTTGT+TGG + chr8.2:20628088-20628107 MS.gene49273:intron 25.0%
!! GTCTGAAATTGTTTATCTTT+GGG + chr8.2:20628526-20628545 MS.gene49273:intron 25.0%
!! TGTCTGAAATTGTTTATCTT+TGG + chr8.2:20628525-20628544 MS.gene49273:intron 25.0%
!! TTAAGATTTAAGACCTTATC+AGG + chr8.2:20625929-20625948 MS.gene49273:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr8.2:20628922-20628941 MS.gene49273:intron 25.0%
!!! GTTACTTTGAAATTGTACAA+AGG + chr8.2:20629424-20629443 MS.gene49273:CDS 25.0%
AAAGAATGCTCAGTAATTTG+AGG + chr8.2:20626388-20626407 MS.gene49273:intron 30.0%
AACATATATACCTCAACCAT+GGG - chr8.2:20626295-20626314 None:intergenic 30.0%
AACTAATGATCTGTTTGGAT+TGG + chr8.2:20628712-20628731 MS.gene49273:intron 30.0%
AAGAATGCTCAGTAATTTGA+GGG + chr8.2:20626389-20626408 MS.gene49273:intron 30.0%
ACCAACTCTATTACTTTGAA+AGG - chr8.2:20627895-20627914 None:intergenic 30.0%
AGATCATATGAATCCTCAAA+GGG + chr8.2:20628412-20628431 MS.gene49273:intron 30.0%
ATACAAAGGTTCACAAAGAA+CGG - chr8.2:20625741-20625760 None:intergenic 30.0%
ATATTCTGTTTAATCGGGTT+TGG + chr8.2:20625455-20625474 MS.gene49273:CDS 30.0%
ATCATGTACATATCCTTCTT+GGG - chr8.2:20628630-20628649 None:intergenic 30.0%
ATCTGTTACAGAATGAATGA+AGG - chr8.2:20628208-20628227 None:intergenic 30.0%
ATGCTGTCTAAATTGGTTAT+TGG + chr8.2:20626829-20626848 MS.gene49273:intron 30.0%
ATTCAGAATATACAAAGGAG+AGG - chr8.2:20626368-20626387 None:intergenic 30.0%
ATTGTAATTGACGATGATAG+TGG + chr8.2:20627333-20627352 MS.gene49273:intron 30.0%
CAAAAAAATCCATCTATAGC+AGG + chr8.2:20627719-20627738 MS.gene49273:CDS 30.0%
CAAGATATCTCATCATTTGA+GGG + chr8.2:20629493-20629512 MS.gene49273:CDS 30.0%
CAGATAGACAAAATGATATG+GGG + chr8.2:20628223-20628242 MS.gene49273:intron 30.0%
CATGATTATGCTGTCTAAAT+TGG + chr8.2:20626822-20626841 MS.gene49273:intron 30.0%
CCATCTAACAAACATTAATG+TGG - chr8.2:20628185-20628204 None:intergenic 30.0%
CTAAAGTAAAGACATTTGTG+TGG - chr8.2:20628028-20628047 None:intergenic 30.0%
CTTGAAGCTGTATATATAGT+TGG - chr8.2:20628949-20628968 None:intergenic 30.0%
CTTGTCTGCTATTGAATTTA+AGG + chr8.2:20627860-20627879 MS.gene49273:intron 30.0%
GTATATTAGCATCCTTTAGA+CGG - chr8.2:20628118-20628137 None:intergenic 30.0%
GTGTGCTTTCAAAAAATGTA+AGG - chr8.2:20629023-20629042 None:intergenic 30.0%
TAACCCATGTTCATTCAAAA+AGG + chr8.2:20625483-20625502 MS.gene49273:CDS 30.0%
TAGGGTATAAAAGAATTGGA+CGG + chr8.2:20626951-20626970 MS.gene49273:intron 30.0%
TAGTTAATAGAACCATGAGA+AGG - chr8.2:20628697-20628716 None:intergenic 30.0%
TATAAAAGAATTGGACGGTT+TGG + chr8.2:20626956-20626975 MS.gene49273:CDS 30.0%
TCCTTTCAAAGTAATAGAGT+TGG + chr8.2:20627891-20627910 MS.gene49273:intron 30.0%
TCTAAATTGGTTATTGGAAG+AGG + chr8.2:20626835-20626854 MS.gene49273:intron 30.0%
TCTTGCAGATATTTGGAAAT+TGG + chr8.2:20629049-20629068 MS.gene49273:intron 30.0%
TTGAAAAGTAACGACATACT+TGG - chr8.2:20626786-20626805 None:intergenic 30.0%
TTGAAAGTGGATAAATTCAG+TGG + chr8.2:20626042-20626061 MS.gene49273:intron 30.0%
! AATCCACATACAGTTTTCAA+TGG - chr8.2:20625660-20625679 None:intergenic 30.0%
! ATCACCTTTTTGAATGAACA+TGG - chr8.2:20625490-20625509 None:intergenic 30.0%
! CCACATTAATGTTTGTTAGA+TGG + chr8.2:20628182-20628201 MS.gene49273:intron 30.0%
! CCTCAACATCTTTTATATTG+CGG + chr8.2:20625808-20625827 MS.gene49273:intron 30.0%
! CTAGTTGTAGTGTTGAATAT+TGG + chr8.2:20627802-20627821 MS.gene49273:intron 30.0%
! GAAATCCTATCATTTGTTAC+CGG + chr8.2:20628382-20628401 MS.gene49273:intron 30.0%
! GCTTGTTTGAGTTTATTTAC+TGG + chr8.2:20628734-20628753 MS.gene49273:intron 30.0%
! TAAGGAACTAAATTGATGAC+TGG - chr8.2:20628060-20628079 None:intergenic 30.0%
! TCACCTTTTTGAATGAACAT+GGG - chr8.2:20625489-20625508 None:intergenic 30.0%
!! AGTAAGCTAAAAGCATCTTA+TGG - chr8.2:20628815-20628834 None:intergenic 30.0%
!! GCTTATCTTTAGTTTGATCT+AGG + chr8.2:20628474-20628493 MS.gene49273:intron 30.0%
!!! TAGATGGATTTTTTTGTCAC+CGG - chr8.2:20627715-20627734 None:intergenic 30.0%
AAAGTGGATAAATTCAGTGG+AGG + chr8.2:20626045-20626064 MS.gene49273:intron 35.0%
ACACCAACTCTGCATATTTA+AGG - chr8.2:20629324-20629343 None:intergenic 35.0%
ACTTGATCGAGAAACAATAC+AGG + chr8.2:20629282-20629301 MS.gene49273:CDS 35.0%
AGAATGCTCAGTAATTTGAG+GGG + chr8.2:20626390-20626409 MS.gene49273:intron 35.0%
AGAGAGTGAAATGAAAACGA+AGG - chr8.2:20625290-20625309 None:intergenic 35.0%
AGAGATGTAGTTTAATCGAG+TGG + chr8.2:20626618-20626637 MS.gene49273:intron 35.0%
ATGAGATATCTTGCCTATAC+AGG - chr8.2:20629486-20629505 None:intergenic 35.0%
ATTACTATGAAGCAATGGCA+CGG - chr8.2:20627315-20627334 None:intergenic 35.0%
ATTAGTCGTAAAGGACTTGA+AGG + chr8.2:20627010-20627029 MS.gene49273:CDS 35.0%
CAACATATATACCTCAACCA+TGG - chr8.2:20626296-20626315 None:intergenic 35.0%
CAAGTACTTCCTCTCATAAA+TGG - chr8.2:20627081-20627100 None:intergenic 35.0%
CAAGTCCTTTACGACTAATT+GGG - chr8.2:20627009-20627028 None:intergenic 35.0%
CACCAACTCTGCATATTTAA+GGG - chr8.2:20629323-20629342 None:intergenic 35.0%
CATCACGTTAATACCTGATA+AGG - chr8.2:20625945-20625964 None:intergenic 35.0%
CATCATGTACATATCCTTCT+TGG - chr8.2:20628631-20628650 None:intergenic 35.0%
CCGCAATATAAAAGATGTTG+AGG - chr8.2:20625811-20625830 None:intergenic 35.0%
CTGAGTAAAACAAATTCTCC+TGG - chr8.2:20626885-20626904 None:intergenic 35.0%
CTTTGTATTGCAGCGATATT+CGG + chr8.2:20625753-20625772 MS.gene49273:intron 35.0%
GAGATCATATGAATCCTCAA+AGG + chr8.2:20628411-20628430 MS.gene49273:intron 35.0%
GATCCATTGAAAACTGTATG+TGG + chr8.2:20625654-20625673 MS.gene49273:intron 35.0%
GATGACACTTGAATCTTTGA+AGG + chr8.2:20628288-20628307 MS.gene49273:intron 35.0%
GCAAGATATCTCATCATTTG+AGG + chr8.2:20629492-20629511 MS.gene49273:CDS 35.0%
GCATCTTATGGACATATCAT+AGG - chr8.2:20628803-20628822 None:intergenic 35.0%
GCTACGTGGAAAATTGAATA+AGG + chr8.2:20626226-20626245 MS.gene49273:CDS 35.0%
GTAGTTTAATCGAGTGGAAT+GGG + chr8.2:20626624-20626643 MS.gene49273:intron 35.0%
TATAAACCATGGTGAATCTG+TGG + chr8.2:20625688-20625707 MS.gene49273:intron 35.0%
TCAAGTCCTTTACGACTAAT+TGG - chr8.2:20627010-20627029 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr8.2:20626485-20626504 MS.gene49273:intron 35.0%
TGTAGTTTAATCGAGTGGAA+TGG + chr8.2:20626623-20626642 MS.gene49273:intron 35.0%
TTAAAACCACAGATTCACCA+TGG - chr8.2:20625697-20625716 None:intergenic 35.0%
TTCATATGATCTCTTGAGAC+CGG - chr8.2:20628404-20628423 None:intergenic 35.0%
TTCATGACATGCAGTTGTAA+AGG + chr8.2:20626148-20626167 MS.gene49273:intron 35.0%
! AGAGTTGGTCCTTTAAAGAA+TGG + chr8.2:20627906-20627925 MS.gene49273:intron 35.0%
! ATGCAATCTGTGTCACTAAA+GGG + chr8.2:20628576-20628595 MS.gene49273:intron 35.0%
! CATCTTTTATATTGCGGTTG+CGG + chr8.2:20625814-20625833 MS.gene49273:intron 35.0%
! CTTTAAAAAAAAGGGCAACC+CGG - chr8.2:20626577-20626596 None:intergenic 35.0%
! GTCACTAAAGGGTGATATTT+TGG + chr8.2:20628587-20628606 MS.gene49273:intron 35.0%
! TATGCAATCTGTGTCACTAA+AGG + chr8.2:20628575-20628594 MS.gene49273:intron 35.0%
! TTGGAAATTGGTATTGAGTC+TGG + chr8.2:20629061-20629080 MS.gene49273:CDS 35.0%
!! AGGGTGCTTACTATTGTTTT+TGG + chr8.2:20628989-20629008 MS.gene49273:intron 35.0%
!! CTGTAATTGCAAAGGTACTT+CGG + chr8.2:20627123-20627142 MS.gene49273:intron 35.0%
!! GTGCTTTTTAGCATACTCAA+TGG - chr8.2:20627680-20627699 None:intergenic 35.0%
!!! CTATCCTTTTTAAAGCAGCA+CGG + chr8.2:20629242-20629261 MS.gene49273:CDS 35.0%
!!! GAATCTGTGGTTTTAAACTG+CGG + chr8.2:20625701-20625720 MS.gene49273:intron 35.0%
!!! TATCCTTTTTAAAGCAGCAC+GGG + chr8.2:20629243-20629262 MS.gene49273:CDS 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr8.2:20626486-20626505 None:intergenic 35.0%
AAACACCTGTGAGACTCTTT+GGG + chr8.2:20628760-20628779 MS.gene49273:intron 40.0%
AAAGGTTCTGTTACTGTAGC+AGG + chr8.2:20629442-20629461 MS.gene49273:CDS 40.0%
AAGATTGTAAATATCCGGCC+AGG + chr8.2:20626864-20626883 MS.gene49273:intron 40.0%
AAGCTATCCTTGAGAGCTTA+TGG - chr8.2:20628839-20628858 None:intergenic 40.0%
AAGGTTGTACTTGCTTACAG+TGG + chr8.2:20626245-20626264 MS.gene49273:CDS 40.0%
AATCCATCTATAGCAGGGAT+AGG + chr8.2:20627725-20627744 MS.gene49273:CDS 40.0%
AATGAGATAGGTGGAAAGCA+CGG + chr8.2:20629142-20629161 MS.gene49273:CDS 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + chr8.2:20626479-20626498 MS.gene49273:intron 40.0%
AGAGGATTGTGAACTTGTGA+TGG - chr8.2:20626350-20626369 None:intergenic 40.0%
AGCCCTTAAATATGCAGAGT+TGG + chr8.2:20629318-20629337 MS.gene49273:CDS 40.0%
AGTAATTTGAGGGGTAACCT+TGG + chr8.2:20626399-20626418 MS.gene49273:intron 40.0%
ATACTTATCCACCGTATCTG+TGG + chr8.2:20627359-20627378 MS.gene49273:intron 40.0%
ATATATAGTTGGGCCCTGTT+TGG - chr8.2:20628938-20628957 None:intergenic 40.0%
ATGATATGGGGTCACTAAAC+TGG + chr8.2:20628235-20628254 MS.gene49273:intron 40.0%
ATGGTTGAGAATAGGCTTGT+AGG + chr8.2:20629181-20629200 MS.gene49273:CDS 40.0%
CAAACATTAATGTGGTGCGT+AGG - chr8.2:20628177-20628196 None:intergenic 40.0%
CAAAGTAACAGAACCTGTTG+TGG - chr8.2:20629413-20629432 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + chr8.2:20626480-20626499 MS.gene49273:intron 40.0%
CAGTACAACAACCACAGATA+CGG - chr8.2:20627373-20627392 None:intergenic 40.0%
CGAATATCGCTGCAATACAA+AGG - chr8.2:20625755-20625774 None:intergenic 40.0%
CGCAGTAATCTTCTGCATAA+AGG - chr8.2:20629389-20629408 None:intergenic 40.0%
CTACAACTAGAGCTAGATTG+CGG - chr8.2:20627792-20627811 None:intergenic 40.0%
CTTACTTCCATAAGCTCTCA+AGG + chr8.2:20628829-20628848 MS.gene49273:intron 40.0%
GAGTTTATGAAACTCCTGGT+GGG + chr8.2:20629218-20629237 MS.gene49273:CDS 40.0%
GCGATATTCGGTCAAAATTG+TGG + chr8.2:20625765-20625784 MS.gene49273:intron 40.0%
GTAAAACAAATTCTCCTGGC+CGG - chr8.2:20626881-20626900 None:intergenic 40.0%
GTACCTTTGCAATTACAGGA+CGG - chr8.2:20627121-20627140 None:intergenic 40.0%
GTCAGTGTAAAACACTGACA+CGG - chr8.2:20627208-20627227 None:intergenic 40.0%
GTGGATGTTGCTAAAGAAGT+TGG + chr8.2:20627421-20627440 MS.gene49273:CDS 40.0%
TAAACACCTGTGAGACTCTT+TGG + chr8.2:20628759-20628778 MS.gene49273:intron 40.0%
TAACCACAAAGCATACCTCA+TGG - chr8.2:20627768-20627787 None:intergenic 40.0%
TACAGGGAAAGGAAATGATC+AGG + chr8.2:20627468-20627487 MS.gene49273:CDS 40.0%
TACCTTTGCAATTACAGGAC+GGG - chr8.2:20627120-20627139 None:intergenic 40.0%
TATACATGTGTCTGCATGTC+TGG + chr8.2:20628133-20628152 MS.gene49273:intron 40.0%
TATTCTCAACCATGTCGATC+CGG - chr8.2:20629174-20629193 None:intergenic 40.0%
TCTGTTTAATCGGGTTTGGA+AGG + chr8.2:20625459-20625478 MS.gene49273:CDS 40.0%
TCTTGCCTATACAGGCTAAA+AGG - chr8.2:20629478-20629497 None:intergenic 40.0%
TGAGACCGGTAACAAATGAT+AGG - chr8.2:20628390-20628409 None:intergenic 40.0%
TTAAAAAGGATAGTCCCACC+AGG - chr8.2:20629235-20629254 None:intergenic 40.0%
TTCTTTAGCAACATCCACCA+TGG - chr8.2:20627419-20627438 None:intergenic 40.0%
TTGAAACCAAGAGCTAGTGT+CGG + chr8.2:20625594-20625613 MS.gene49273:CDS 40.0%
TTGTTGATGTGCTACATGTC+CGG + chr8.2:20626909-20626928 MS.gene49273:intron 40.0%
! ACGCCTTTAATCTGAAGTGT+TGG - chr8.2:20627170-20627189 None:intergenic 40.0%
! AGAGTCCTTTTAGCCTGTAT+AGG + chr8.2:20629470-20629489 MS.gene49273:CDS 40.0%
! ATTTGCGTCGATGTTGAAAG+TGG + chr8.2:20626029-20626048 MS.gene49273:intron 40.0%
! CGAAGTACCTTTGCAATTAC+AGG - chr8.2:20627125-20627144 None:intergenic 40.0%
! CGCCTTTAATCTGAAGTGTT+GGG - chr8.2:20627169-20627188 None:intergenic 40.0%
!! ATGAGAGGAAGTACTTGCTT+GGG + chr8.2:20627084-20627103 MS.gene49273:CDS 40.0%
!! CCTTTAATCTGAAGTGTTGG+GGG - chr8.2:20627167-20627186 None:intergenic 40.0%
!! GCCTTTAATCTGAAGTGTTG+GGG - chr8.2:20627168-20627187 None:intergenic 40.0%
!! TATGAGAGGAAGTACTTGCT+TGG + chr8.2:20627083-20627102 MS.gene49273:CDS 40.0%
!!! GATTTTTTTGTCACCGGAAC+GGG - chr8.2:20627709-20627728 None:intergenic 40.0%
!!! GGATTTTTTTGTCACCGGAA+CGG - chr8.2:20627710-20627729 None:intergenic 40.0%
AAACATTGTGGCTCCATGGA+GGG + chr8.2:20627627-20627646 MS.gene49273:CDS 45.0%
AAGATTACTGCGACCACAAC+AGG + chr8.2:20629397-20629416 MS.gene49273:CDS 45.0%
AAGGAGAACCTGTTGCATGA+AGG - chr8.2:20625271-20625290 None:intergenic 45.0%
ACACATCAGTCATTGTCCCA+TGG + chr8.2:20626276-20626295 MS.gene49273:CDS 45.0%
AGCCTCCCAATTAGTCGTAA+AGG + chr8.2:20627001-20627020 MS.gene49273:CDS 45.0%
AGCTAAACATTGTGGCTCCA+TGG + chr8.2:20627623-20627642 MS.gene49273:CDS 45.0%
AGGAGAACCTGTTGCATGAA+GGG - chr8.2:20625270-20625289 None:intergenic 45.0%
AGTCGTAAAGGACTTGAAGG+AGG + chr8.2:20627013-20627032 MS.gene49273:CDS 45.0%
ATAGCAGGGATAGGAACCTA+TGG + chr8.2:20627734-20627753 MS.gene49273:CDS 45.0%
CAGAGTAAGCTTCCTTCTCA+TGG + chr8.2:20628682-20628701 MS.gene49273:intron 45.0%
CCCCCAACACTTCAGATTAA+AGG + chr8.2:20627164-20627183 MS.gene49273:intron 45.0%
CGTCTTGCCATTGAGTGAAA+CGG - chr8.2:20629092-20629111 None:intergenic 45.0%
CGTGCAATACACCAAATGGT+GGG + chr8.2:20626511-20626530 MS.gene49273:intron 45.0%
GAACCCCAAGCTAAACATTG+TGG + chr8.2:20627615-20627634 MS.gene49273:CDS 45.0%
GAAGATTCCGAAGCCAAGAA+GGG + chr8.2:20626197-20626216 MS.gene49273:CDS 45.0%
GAAGCTTACTCTGCTTGATC+TGG - chr8.2:20628675-20628694 None:intergenic 45.0%
GACTTGAACCCATGACCTTA+CGG - chr8.2:20626453-20626472 None:intergenic 45.0%
GCTTTACGGTCTTCCAATGA+AGG + chr8.2:20629558-20629577 MS.gene49273:CDS 45.0%
GGAGTTTATGAAACTCCTGG+TGG + chr8.2:20629217-20629236 MS.gene49273:CDS 45.0%
GGATCGACATGGTTGAGAAT+AGG + chr8.2:20629173-20629192 MS.gene49273:CDS 45.0%
GTAAAACACTGACACGGTGT+TGG - chr8.2:20627202-20627221 None:intergenic 45.0%
GTACATGATGTCTGTAGACC+CGG + chr8.2:20628641-20628660 MS.gene49273:CDS 45.0%
GTCCTTTACGACTAATTGGG+AGG - chr8.2:20627006-20627025 None:intergenic 45.0%
GTCTTGCCATTGAGTGAAAC+GGG - chr8.2:20629091-20629110 None:intergenic 45.0%
GTTCCTATCCCTGCTATAGA+TGG - chr8.2:20627731-20627750 None:intergenic 45.0%
GTTGTACTTGCTTACAGTGG+TGG + chr8.2:20626248-20626267 MS.gene49273:CDS 45.0%
GTTGTTGTCATGTGACCGTA+AGG + chr8.2:20626435-20626454 MS.gene49273:intron 45.0%
TAAACATTGTGGCTCCATGG+AGG + chr8.2:20627626-20627645 MS.gene49273:CDS 45.0%
TACAACAACCACAGATACGG+TGG - chr8.2:20627370-20627389 None:intergenic 45.0%
TAGCCATGAGGTATGCTTTG+TGG + chr8.2:20627762-20627781 MS.gene49273:intron 45.0%
TATGATCAAGCTGATGCTGC+TGG + chr8.2:20629526-20629545 MS.gene49273:CDS 45.0%
TCATGTGACCGTAAGGTCAT+GGG + chr8.2:20626442-20626461 MS.gene49273:intron 45.0%
TCATTGGAAGACCGTAAAGC+CGG - chr8.2:20629558-20629577 None:intergenic 45.0%
TCCTTCTTGGGTTCATTAGC+CGG - chr8.2:20628618-20628637 None:intergenic 45.0%
TGAAGATTCCGAAGCCAAGA+AGG + chr8.2:20626196-20626215 MS.gene49273:CDS 45.0%
TGACATGTCCGTGTTATGTC+CGG + chr8.2:20627286-20627305 MS.gene49273:intron 45.0%
TGGAGCCACAATGTTTAGCT+TGG - chr8.2:20627623-20627642 None:intergenic 45.0%
TTTGTTGGAAGGCCGTCTAA+AGG + chr8.2:20628103-20628122 MS.gene49273:intron 45.0%
! AGTTGGTGTATGCTGGTAGA+TGG + chr8.2:20629335-20629354 MS.gene49273:CDS 45.0%
! ATAGGTGGAAAGCACGGAAT+TGG + chr8.2:20629148-20629167 MS.gene49273:CDS 45.0%
! GCATGTCTGGAAGCACATAT+GGG + chr8.2:20628146-20628165 MS.gene49273:intron 45.0%
! GGAGCCACAATGTTTAGCTT+GGG - chr8.2:20627622-20627641 None:intergenic 45.0%
! TGCATGTCTGGAAGCACATA+TGG + chr8.2:20628145-20628164 MS.gene49273:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - chr8.2:20626475-20626494 None:intergenic 45.0%
!! ACTCCCGTGCTGCTTTAAAA+AGG - chr8.2:20629249-20629268 None:intergenic 45.0%
!! GAGCCACAATGTTTAGCTTG+GGG - chr8.2:20627621-20627640 None:intergenic 45.0%
!! GGGTGATATTTTGGAAGACC+CGG + chr8.2:20628596-20628615 MS.gene49273:intron 45.0%
!! TATGCAGAGTTGGTGTATGC+TGG + chr8.2:20629328-20629347 MS.gene49273:CDS 45.0%
!! TGGTGCTGCAGAGAGAATTA+TGG + chr8.2:20626727-20626746 MS.gene49273:intron 45.0%
!!! CTGATGCTGCTGGTTTTATC+CGG + chr8.2:20629536-20629555 MS.gene49273:CDS 45.0%
!!! GCTGGTTTTATCCGGCTTTA+CGG + chr8.2:20629544-20629563 MS.gene49273:CDS 45.0%
!!! TTTTAAAGCAGCACGGGAGT+TGG + chr8.2:20629249-20629268 MS.gene49273:CDS 45.0%
!!! TTATTTTTTTATAAACATTT+AGG + chr8.2:20627564-20627583 MS.gene49273:intron 5.0%
AAAGCACAACGTTCCCGTTC+CGG + chr8.2:20627693-20627712 MS.gene49273:CDS 50.0%
AAGGTCATGGGTTCAAGTCC+TGG + chr8.2:20626454-20626473 MS.gene49273:intron 50.0%
AATTACAGGACGGGCCATTG+AGG - chr8.2:20627111-20627130 None:intergenic 50.0%
ACGGTCTTCCAATGAAGGTC+CGG + chr8.2:20629563-20629582 MS.gene49273:CDS 50.0%
ACTCCTTCCCTTCATGCAAC+AGG + chr8.2:20625260-20625279 MS.gene49273:CDS 50.0%
AGCTCAGCGAGTAAAGTTGC+TGG - chr8.2:20629121-20629140 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG - chr8.2:20626419-20626438 None:intergenic 50.0%
CAGTCATTGTCCCATGGTTG+AGG + chr8.2:20626282-20626301 MS.gene49273:CDS 50.0%
CCTATGGCATCTTAGCCATG+AGG + chr8.2:20627750-20627769 MS.gene49273:CDS 50.0%
CCTCATGGCTAAGATGCCAT+AGG - chr8.2:20627753-20627772 None:intergenic 50.0%
CCTTCTTGGGTTCATTAGCC+GGG - chr8.2:20628617-20628636 None:intergenic 50.0%
CTCGCTGAGCTCAATGAGAT+AGG + chr8.2:20629130-20629149 MS.gene49273:CDS 50.0%
GAACCTGTTGCATGAAGGGA+AGG - chr8.2:20625266-20625285 None:intergenic 50.0%
GAAGCCAAAGCAAAAGCCAG+TGG + chr8.2:20626978-20626997 MS.gene49273:CDS 50.0%
GAAGGAGTAGTAGTAGCGCA+TGG - chr8.2:20625248-20625267 None:intergenic 50.0%
GATGCAGTGCATTCCCTTTG+AGG - chr8.2:20628428-20628447 None:intergenic 50.0%
GCGTGCAATACACCAAATGG+TGG + chr8.2:20626510-20626529 MS.gene49273:intron 50.0%
GCTGAGCTCAATGAGATAGG+TGG + chr8.2:20629133-20629152 MS.gene49273:CDS 50.0%
GCTGCGTGCAATACACCAAA+TGG + chr8.2:20626507-20626526 MS.gene49273:intron 50.0%
GGACTTCCCGTTTCACTCAA+TGG + chr8.2:20629082-20629101 MS.gene49273:CDS 50.0%
GGAGGGAGTGGGATATTACA+GGG + chr8.2:20627644-20627663 MS.gene49273:CDS 50.0%
GGCAGTATCACGCAGTCATA+CGG + chr8.2:20626169-20626188 MS.gene49273:CDS 50.0%
GTAATATCCCACTCCCTCCA+TGG - chr8.2:20627643-20627662 None:intergenic 50.0%
GTACTTGCTTGGGACCTCAA+TGG + chr8.2:20627094-20627113 MS.gene49273:CDS 50.0%
GTAGTAGCGCATGGATGTGA+AGG - chr8.2:20625239-20625258 None:intergenic 50.0%
GTATCACGCAGTCATACGGA+TGG + chr8.2:20626173-20626192 MS.gene49273:CDS 50.0%
GTATTTCCTTGCTTGCGTGC+TGG + chr8.2:20627053-20627072 MS.gene49273:CDS 50.0%
GTCATGTGACCGTAAGGTCA+TGG + chr8.2:20626441-20626460 MS.gene49273:intron 50.0%
GTGTGCTTCACTGCTGATGT+TGG + chr8.2:20626760-20626779 MS.gene49273:CDS 50.0%
GTTCTCCCAAAGAGTCTCAC+AGG - chr8.2:20628768-20628787 None:intergenic 50.0%
TCCTTTCCCTGTACACCCAT+GGG - chr8.2:20627461-20627480 None:intergenic 50.0%
TGATCCACTTCGTGAGTCGA+TGG + chr8.2:20629360-20629379 MS.gene49273:CDS 50.0%
TGGAGGGAGTGGGATATTAC+AGG + chr8.2:20627643-20627662 MS.gene49273:CDS 50.0%
TTCCTTTCCCTGTACACCCA+TGG - chr8.2:20627462-20627481 None:intergenic 50.0%
! ACTGATTGATCCGTGCTGAC+TGG + chr8.2:20627389-20627408 MS.gene49273:intron 50.0%
!! ATTGATCCGTGCTGACTGGT+AGG + chr8.2:20627393-20627412 MS.gene49273:intron 50.0%
!! GTGCTGGTGCCATTTATGAG+AGG + chr8.2:20627069-20627088 MS.gene49273:CDS 50.0%
ACTGAAGCTCCCGCATATGC+AGG - chr8.2:20626551-20626570 None:intergenic 55.0%
AGCATTGCCCGGACCTTCAT+TGG - chr8.2:20629574-20629593 None:intergenic 55.0%
CACGGACACCGGACATAACA+CGG - chr8.2:20627297-20627316 None:intergenic 55.0%
CATGATGTCTGTAGACCCGG+AGG + chr8.2:20628644-20628663 MS.gene49273:CDS 55.0%
CCCGGCTAATGAACCCAAGA+AGG + chr8.2:20628614-20628633 MS.gene49273:CDS 55.0%
CGGTCTTCCAATGAAGGTCC+GGG + chr8.2:20629564-20629583 MS.gene49273:CDS 55.0%
CTGAAGCTCCCGCATATGCA+GGG - chr8.2:20626550-20626569 None:intergenic 55.0%
CTGTCTCCCATGGGTGTACA+GGG + chr8.2:20627452-20627471 MS.gene49273:CDS 55.0%
GACTAATTGGGAGGCTCCAC+TGG - chr8.2:20626997-20627016 None:intergenic 55.0%
GAGCTGATGCTGTCTCCCAT+GGG + chr8.2:20627443-20627462 MS.gene49273:CDS 55.0%
GGCCCGTCCTGTAATTGCAA+AGG + chr8.2:20627115-20627134 MS.gene49273:CDS 55.0%
GTCCGGGCAATGCTTGAACA+GGG + chr8.2:20629580-20629599 MS.gene49273:CDS 55.0%
TCCCATGGGTGTACAGGGAA+AGG + chr8.2:20627457-20627476 MS.gene49273:CDS 55.0%
TCCGAAGCCAAGAAGGGTAG+CGG + chr8.2:20626203-20626222 MS.gene49273:CDS 55.0%
TGAAGCAATGGCACGGACAC+CGG - chr8.2:20627308-20627327 None:intergenic 55.0%
! ACTGACACGGTGTTGGACAC+TGG - chr8.2:20627195-20627214 None:intergenic 55.0%
! CTTGATCTGGAGCATCCTCC+GGG - chr8.2:20628662-20628681 None:intergenic 55.0%
! GCTTGATCTGGAGCATCCTC+CGG - chr8.2:20628663-20628682 None:intergenic 55.0%
! GTGGAAAGCACGGAATTGGC+CGG + chr8.2:20629152-20629171 MS.gene49273:CDS 55.0%
!! GTCGGTGCTGGTAGACTTCA+AGG + chr8.2:20625612-20625631 MS.gene49273:CDS 55.0%
!!! GGCTCCACTGGCTTTTGCTT+TGG - chr8.2:20626985-20627004 None:intergenic 55.0%
ACGTAGCCCGCTACCCTTCT+TGG - chr8.2:20626213-20626232 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG + chr8.2:20626408-20626427 MS.gene49273:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + chr8.2:20626555-20626574 MS.gene49273:intron 60.0%
ATGGCACCAGCACGCAAGCA+AGG - chr8.2:20627062-20627081 None:intergenic 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr8.2:20626538-20626557 None:intergenic 60.0%
CCATGGCCTACCAGTCAGCA+CGG - chr8.2:20627402-20627421 None:intergenic 60.0%
CCCGCTACCCTTCTTGGCTT+CGG - chr8.2:20626207-20626226 None:intergenic 60.0%
CCGAAGCCAAGAAGGGTAGC+GGG + chr8.2:20626204-20626223 MS.gene49273:CDS 60.0%
CGGAATTGGCCGGATCGACA+TGG + chr8.2:20629162-20629181 MS.gene49273:CDS 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr8.2:20626538-20626557 MS.gene49273:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr8.2:20626539-20626558 None:intergenic 60.0%
GCTGTCTCCCATGGGTGTAC+AGG + chr8.2:20627451-20627470 MS.gene49273:CDS 60.0%
GGAGCTGATGCTGTCTCCCA+TGG + chr8.2:20627442-20627461 MS.gene49273:CDS 60.0%
GGTCCGGGCAATGCTTGAAC+AGG + chr8.2:20629579-20629598 MS.gene49273:CDS 60.0%
TGTGGCTCCATGGAGGGAGT+GGG + chr8.2:20627633-20627652 MS.gene49273:CDS 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr8.2:20626539-20626558 MS.gene49273:intron 60.0%
TTGTGGCTCCATGGAGGGAG+TGG + chr8.2:20627632-20627651 MS.gene49273:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr8.2:20626523-20626542 MS.gene49273:intron 60.0%
! GGCCCTGTTCAAGCATTGCC+CGG - chr8.2:20629585-20629604 None:intergenic 60.0%
! TGCTGACTGGTAGGCCATGG+TGG + chr8.2:20627402-20627421 MS.gene49273:intron 60.0%
!! AAGAAGGGTAGCGGGCTACG+TGG + chr8.2:20626212-20626231 MS.gene49273:CDS 60.0%
!! CCAAGAGCTAGTGTCGGTGC+TGG + chr8.2:20625600-20625619 MS.gene49273:CDS 60.0%
!! CCAGCACCGACACTAGCTCT+TGG - chr8.2:20625603-20625622 None:intergenic 60.0%
!! GCGTCCATCGACTCACGAAG+TGG - chr8.2:20629367-20629386 None:intergenic 60.0%
CGCATATGCAGGGTCCGGGA+AGG - chr8.2:20626540-20626559 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr8.2:20626525-20626544 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr8.2:20626544-20626563 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr8.2:20626545-20626564 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + chr8.2:20626556-20626575 MS.gene49273:intron 65.0%
!! CCGTGCTGACTGGTAGGCCA+TGG + chr8.2:20627399-20627418 MS.gene49273:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 20625215 20629609 20625215 ID=MS.gene49273
chr8.2 mRNA 20625215 20629609 20625215 ID=MS.gene49273.t1;Parent=MS.gene49273
chr8.2 exon 20625215 20625281 20625215 ID=MS.gene49273.t1.exon1;Parent=MS.gene49273.t1
chr8.2 CDS 20625215 20625281 20625215 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20625452 20625504 20625452 ID=MS.gene49273.t1.exon2;Parent=MS.gene49273.t1
chr8.2 CDS 20625452 20625504 20625452 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20625594 20625633 20625594 ID=MS.gene49273.t1.exon3;Parent=MS.gene49273.t1
chr8.2 CDS 20625594 20625633 20625594 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20626162 20626303 20626162 ID=MS.gene49273.t1.exon4;Parent=MS.gene49273.t1
chr8.2 CDS 20626162 20626303 20626162 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20626738 20626786 20626738 ID=MS.gene49273.t1.exon5;Parent=MS.gene49273.t1
chr8.2 CDS 20626738 20626786 20626738 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20626954 20627136 20626954 ID=MS.gene49273.t1.exon6;Parent=MS.gene49273.t1
chr8.2 CDS 20626954 20627136 20626954 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20627415 20627489 20627415 ID=MS.gene49273.t1.exon7;Parent=MS.gene49273.t1
chr8.2 CDS 20627415 20627489 20627415 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20627586 20627771 20627586 ID=MS.gene49273.t1.exon8;Parent=MS.gene49273.t1
chr8.2 CDS 20627586 20627771 20627586 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20628597 20628685 20628597 ID=MS.gene49273.t1.exon9;Parent=MS.gene49273.t1
chr8.2 CDS 20628597 20628685 20628597 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
chr8.2 exon 20629057 20629609 20629057 ID=MS.gene49273.t1.exon10;Parent=MS.gene49273.t1
chr8.2 CDS 20629057 20629609 20629057 ID=cds.MS.gene49273.t1;Parent=MS.gene49273.t1
Gene Sequence

>MS.gene49273

ATGGCTCAGTTGAAAGCATTTCCTTCACATCCATGCGCTACTACTACTCCTTCCCTTCATGCAACAGGTTCTCCTTCGTTTTCATTTCACTCTCTTTCAAAAATGCTATTAACAATTTCAAAAACCCCATTTTTTGAATGTCATTAACAATTTATCATGACCCTTTATTGATTTTCATTACATTTCAACATCTCATTATGACATTATCTTCTTTGTTTTCTTGATTGTCATTTGCAGAGAATATTCTGTTTAATCGGGTTTGGAAGGCTAACCCATGTTCATTCAAAAAGGTGATATTTAAAAGTTCAAACTTTATTATTAGAGTTTACTAATATATGCTTTTATTTCATATTTTGTGACCCTTTTTTAATCTGTGTAGTTGAAACCAAGAGCTAGTGTCGGTGCTGGTAGACTTCAAGGTGAGATTATTTTGTCTCAAGATCCATTGAAAACTGTATGTGGATTGCATGATTTATAAACCATGGTGAATCTGTGGTTTTAAACTGCGGTGACAGTTTAGTTTCCGTTCTTTGTGAACCTTTGTATTGCAGCGATATTCGGTCAAAATTGTGGTTACGACACTGTTGCAGAGACCTCAACATCTTTTATATTGCGGTTGCGGACCGCAATTTGAAACCATATTCTTTAAGTTAAAACATAATTATTCAATAGCATGTGGTATTTCCTATTGTTCTTTGTAGTTGAATCTTTTAATTAAGATTTAAGACCTTATCAGGTATTAACGTGATGCGTCTCTCCAATTTTATTCTTTATATGTTGGAAATGAATGGACTCATCTGTTTTCACTAGTGTAATTTGCGTCGATGTTGAAAGTGGATAAATTCAGTGGAGGAACTGTGTGTTCACCAGTTGATTATATTGATTAGATGCCGTTTGATAGTTAAGTCTAATGTTTGTAATGCTATAGAAGTTTTCATGACATGCAGTTGTAAAGGCAGTATCACGCAGTCATACGGATGGTGAAGATTCCGAAGCCAAGAAGGGTAGCGGGCTACGTGGAAAATTGAATAAGGTTGTACTTGCTTACAGTGGTGGCTTAGACACATCAGTCATTGTCCCATGGTTGAGGTATATATGTTGCCTTGTTCTTTTTTATTTTTCTACTAGATTTCCATCACAAGTTCACAATCCTCTCCTTTGTATATTCTGAATAAAGAATGCTCAGTAATTTGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACCGTAAGGTCATGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTAAAAACAGGGTAAGGCTGCGTGCAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTCAGTGCACCGGGTTGCCCTTTTTTTTAAAGAATGCTAGTAATTTAGATTTTAGAGATGTAGTTTAATCGAGTGGAATGGGTAAATAAAGATTAGAAACCATTTTGAAGTTACCTATTGTTGTATAATTTGTTCTTGTTATATTATCTTATTTAATGATTTTGGTGCTGCAGAGAGAATTATGGTTGTGATGTTGTGTGCTTCACTGCTGATGTTGGCCAAGTATGTCGTTACTTTTCAAATTTATTTCTTCTAATCATGATTATGCTGTCTAAATTGGTTATTGGAAGAGGCGTTATAAGATTGTAAATATCCGGCCAGGAGAATTTGTTTTACTCAGTTTATTGTTGATGTGCTACATGTCCGGTAACAAAATCAATTTCATATAGGGTATAAAAGAATTGGACGGTTTGGAAGCCAAAGCAAAAGCCAGTGGAGCCTCCCAATTAGTCGTAAAGGACTTGAAGGAGGAATTTGTTAAAGATTACGTATTTCCTTGCTTGCGTGCTGGTGCCATTTATGAGAGGAAGTACTTGCTTGGGACCTCAATGGCCCGTCCTGTAATTGCAAAGGTACTTCGGCTTGAAGTTTGATATTTACCCCCAACACTTCAGATTAAAGGCGTGTCCAGTGTCCAACACCGTGTCAGTGTTTTACACTGACACGATACTGACACATGTATTTATATTCAATTTCTTCCATTCTTCAAATAATAATCGGTTGACATGTCCGTGTTATGTCCGGTGTCCGTGCCATTGCTTCATAGTAATTGTAATTGACGATGATAGTGGAACATACTTATCCACCGTATCTGTGGTTGTTGTACTGATTGATCCGTGCTGACTGGTAGGCCATGGTGGATGTTGCTAAAGAAGTTGGAGCTGATGCTGTCTCCCATGGGTGTACAGGGAAAGGAAATGATCAGGCATGTCTTCAGTCTTCTTACTATTATAGTTATAGTACTTTGTCATGTCAATTATATTATTCTGACTGATTTATTTATTTTTTTATAAACATTTAGGTTCGATTTGAGCTTACTTTCTTTGCGCTGAACCCCAAGCTAAACATTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCCATTGAGTATGCTAAAAAGCACAACGTTCCCGTTCCGGTGACAAAAAAATCCATCTATAGCAGGGATAGGAACCTATGGCATCTTAGCCATGAGGTATGCTTTGTGGTTATCCGCAATCTAGCTCTAGTTGTAGTGTTGAATATTGGCTGAGTTTAATGATTTGTTTGTTTTTTCATTGGGTCTTGTCTGCTATTGAATTTAAGGTCAGATGATCCTTTCAAAGTAATAGAGTTGGTCCTTTAAAGAATGGTCTATAAAAACACATATTCATAATATATCAAAGCAAGATACACAAATTTCTAATAGATCTATAGATTCTGGGAAATGTAAAAAATCACGTGATTATCCACACAAATGTCTTTACTTTAGTCTAAGATTCCAGTCATCAATTTAGTTCCTTATTAATTTTGTCCTTTAATTATCTTTTGTTGGAAGGCCGTCTAAAGGATGCTAATATACATGTGTCTGCATGTCTGGAAGCACATATGGGTTTGACCTACGCACCACATTAATGTTTGTTAGATGGCCTTCATTCATTCTGTAACAGATAGACAAAATGATATGGGGTCACTAAACTGGTGACAACAAAACTCTTAAGATCTCATGTGTGATGACACTTGAATCTTTGAAGGAAAAAAATTATGGTTCACTGTAATTTGTTTCTAAATGTGTGTAACATAACATATTTTTAGAACTATTTAAAGAAATCCTATCATTTGTTACCGGTCTCAAGAGATCATATGAATCCTCAAAGGGAATGCACTGCATCATTTCTATGCTATATCGTTCGAAATTGCTTATCTTTAGTTTGATCTAGGATTATGCTTTATGAAATTGTTTATCTATTGTCTGAAATTGTTTATCTTTGGGAGCGAGATGCTACTGTTTCTCTGATATATGCAATCTGTGTCACTAAAGGGTGATATTTTGGAAGACCCGGCTAATGAACCCAAGAAGGATATGTACATGATGTCTGTAGACCCGGAGGATGCTCCAGATCAAGCAGAGTAAGCTTCCTTCTCATGGTTCTATTAACTAATGATCTGTTTGGATTGGCTTGTTTGAGTTTATTTACTGGCATAAACACCTGTGAGACTCTTTGGGAGAACTTATGTAAACATCCTATGATATGTCCATAAGATGCTTTTAGCTTACTTCCATAAGCTCTCAAGGATAGCTTATGAAAACAACTTATAGCTTATATAAAAACAGTTTGATAAACACTTATGCTATAAGTATTAAATTAAGTTGTTTATCCAAACAGGGCCCAACTATATATACAGCTTCAAGTTTCTGTTATGCTTTTAAAAAGGGTGCTTACTATTGTTTTTGGAAGTTGTACCTTACATTTTTTGAAAGCACACATTATTTCTTGCAGATATTTGGAAATTGGTATTGAGTCTGGACTTCCCGTTTCACTCAATGGCAAGACGCTCTCACCAGCAACTTTACTCGCTGAGCTCAATGAGATAGGTGGAAAGCACGGAATTGGCCGGATCGACATGGTTGAGAATAGGCTTGTAGGCATGAAGAGCCGCGGAGTTTATGAAACTCCTGGTGGGACTATCCTTTTTAAAGCAGCACGGGAGTTGGAGTCTTTGACACTTGATCGAGAAACAATACAGGTGAAAGATACATTAGCCCTTAAATATGCAGAGTTGGTGTATGCTGGTAGATGGTTTGATCCACTTCGTGAGTCGATGGACGCCTTTATGCAGAAGATTACTGCGACCACAACAGGTTCTGTTACTTTGAAATTGTACAAAGGTTCTGTTACTGTAGCAGGTATGAAGAGTCCTTTTAGCCTGTATAGGCAAGATATCTCATCATTTGAGGGTAGTGAGATATATGATCAAGCTGATGCTGCTGGTTTTATCCGGCTTTACGGTCTTCCAATGAAGGTCCGGGCAATGCTTGAACAGGGCCTTTAA

Protein sequence

>MS.gene49273.t1

MAQLKAFPSHPCATTTPSLHATENILFNRVWKANPCSFKKLKPRASVGAGRLQVVKAVSRSHTDGEDSEAKKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQGIKELDGLEAKAKASGASQLVVKDLKEEFVKDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNIVAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPKKDMYMMSVDPEDAPDQAEYLEIGIESGLPVSLNGKTLSPATLLAELNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFKAARELESLTLDRETIQVKDTLALKYAELVYAGRWFDPLRESMDAFMQKITATTTGSVTLKLYKGSVTVAGMKSPFSLYRQDISSFEGSEIYDQADAAGFIRLYGLPMKVRAMLEQGL