AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49736


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49736.t1 MTR_8g095110 98.357 487 8 0 1 487 89 575 0.0 1001
MS.gene49736.t1 MTR_8g095140 78.243 478 104 0 1 478 100 577 0.0 790
MS.gene49736.t1 MTR_8g095150 74.530 479 109 3 1 478 87 553 0.0 716
MS.gene49736.t1 MTR_8g095130 71.311 488 99 5 24 487 4 474 0.0 680
MS.gene49736.t1 MTR_2g005730 52.063 509 214 5 1 480 90 597 1.36e-179 517
MS.gene49736.t1 MTR_8g095090 47.601 521 234 7 1 487 1 516 1.39e-156 455
MS.gene49736.t1 MTR_8g095090 47.601 521 234 7 1 487 84 599 2.09e-155 455
MS.gene49736.t1 MTR_4g088500 42.639 523 256 7 1 481 96 616 2.66e-137 409
MS.gene49736.t1 MTR_8g097210 37.643 526 278 9 1 478 1 524 2.41e-110 337
MS.gene49736.t1 MTR_8g097210 37.643 526 278 9 1 478 95 618 4.76e-109 337
MS.gene49736.t1 MTR_2g017740 38.586 495 264 8 1 478 95 566 2.50e-108 333
MS.gene49736.t1 MTR_3g084930 35.526 532 286 9 1 478 91 619 2.85e-99 311
MS.gene49736.t1 MTR_8g105700 36.770 514 248 10 1 477 80 553 1.83e-97 305
MS.gene49736.t1 MTR_2g005730 48.387 310 135 3 1 286 90 398 1.26e-94 294
MS.gene49736.t1 MTR_7g116350 37.123 431 188 11 65 481 443 804 1.98e-70 239
MS.gene49736.t1 MTR_4g027860 38.395 349 178 7 147 478 78 406 5.99e-70 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49736.t1 AT4G24290 49.709 515 224 5 1 484 89 599 3.90e-173 500
MS.gene49736.t1 AT4G24290 49.709 515 224 5 1 484 89 599 3.90e-173 500
MS.gene49736.t1 AT1G28380 44.084 524 243 11 1 481 92 608 2.80e-131 394
MS.gene49736.t1 AT1G29690 38.911 496 254 12 1 478 97 561 2.17e-100 312
MS.gene49736.t1 AT1G14780 35.140 535 283 16 1 476 89 618 7.07e-91 290
MS.gene49736.t1 AT4G24290 42.972 249 115 3 1 223 89 336 2.09e-60 202

Find 128 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCATTTCTGTGCTTCATT+TGG 0.229180 4.4:-7635835 MS.gene49736:CDS
CTGCGCTTCTCCAAAGTTAT+TGG 0.250969 4.4:-7633964 MS.gene49736:CDS
CTTTCCCTCTTTCGGAATAA+AGG 0.265281 4.4:+7633861 None:intergenic
TGACCCCTCTTTCCCTCTTT+CGG 0.276599 4.4:+7633853 None:intergenic
TGTGCTTCATTTGGGTTATC+TGG 0.301827 4.4:-7635826 MS.gene49736:CDS
GTCATTTCTGTGCTTCATTT+GGG 0.313321 4.4:-7635834 MS.gene49736:CDS
AGACGTATCTCGCTAAATAT+AGG 0.317937 4.4:+7634485 None:intergenic
AGCTCCATTTCACTTTCTTA+TGG 0.318511 4.4:+7634088 None:intergenic
CCAGTATCCTGGAGTGTCTT+CGG 0.320923 4.4:+7633714 None:intergenic
GCAAAGCTTTCTGCACATAA+TGG 0.328407 4.4:-7633679 MS.gene49736:CDS
ATGGTCACATCGCCTGGTTT+TGG 0.329583 4.4:+7633829 None:intergenic
CTCCTACAAGACGCATTTCA+TGG 0.331088 4.4:+7635869 None:intergenic
CCGAAGACACTCCAGGATAC+TGG 0.331869 4.4:-7633714 MS.gene49736:CDS
TGGAGAAGCGCAGCCGTAAA+AGG 0.346124 4.4:+7633974 None:intergenic
CTGGCTAAGATTTAGTATCT+TGG 0.347933 4.4:-7634432 MS.gene49736:CDS
TGTAATCTCAGGCCAATTAC+TGG 0.365361 4.4:+7634237 None:intergenic
GACGTATCTCGCTAAATATA+GGG 0.371384 4.4:+7634486 None:intergenic
GTTGGTAATAGACCAGTAAT+TGG 0.382891 4.4:-7634249 MS.gene49736:CDS
CAGTATCCTGGAGTGTCTTC+GGG 0.387249 4.4:+7633715 None:intergenic
TTGTTGAATATCCGTGGAAA+TGG 0.394567 4.4:-7634957 MS.gene49736:CDS
ATTAAGTCTCTTGCTTATGA+TGG 0.395072 4.4:-7635778 MS.gene49736:CDS
ATCATGGGACCCTGAGGCCT+TGG 0.403203 4.4:-7635674 MS.gene49736:CDS
TCTAACCTTGCCAAGGCCTC+AGG 0.403832 4.4:+7635664 None:intergenic
AATTGGCCTGAGATTACAAT+TGG 0.406239 4.4:-7634232 MS.gene49736:CDS
AACCATGAAATGCGTCTTGT+AGG 0.407081 4.4:-7635871 MS.gene49736:CDS
TGGCTAAGATTTAGTATCTT+GGG 0.407867 4.4:-7634431 MS.gene49736:CDS
CAAAGCTTTCTGCACATAAT+GGG 0.418467 4.4:-7633678 MS.gene49736:CDS
AATTGATGGAGGTCCTCAAT+TGG 0.418554 4.4:+7634539 None:intergenic
ATTGTATTTATGTAAAGCTT+AGG 0.420450 4.4:+7634407 None:intergenic
CAACTGGGCTCCTGTGACAA+TGG 0.423001 4.4:+7634017 None:intergenic
TCGGAACTCATGTGATAGTC+GGG 0.426259 4.4:-7635411 MS.gene49736:CDS
AGATACGTCTTGGTTCTTAC+TGG 0.428387 4.4:-7634472 MS.gene49736:CDS
CCAGGATACTGGGTTGTGTC+TGG 0.429175 4.4:-7633703 MS.gene49736:CDS
GCTGCTGAAACCGCCAAGAT+TGG 0.440338 4.4:+7633903 None:intergenic
TCCCTTCCAATTGTAATCTC+AGG 0.441693 4.4:+7634226 None:intergenic
AACAGCTAGCACGAAGTTCA+TGG 0.443770 4.4:-7635296 MS.gene49736:CDS
AGTCTCTTGCTTATGATGGT+TGG 0.445593 4.4:-7635774 MS.gene49736:CDS
CTTGTAGGAGACACTGCATC+TGG 0.453976 4.4:-7635856 MS.gene49736:CDS
AATGTATCATAGTGAATGGT+TGG 0.460632 4.4:-7635039 MS.gene49736:CDS
CCCACTCGGGTGGTTTCTGA+AGG 0.465186 4.4:+7633935 None:intergenic
GAACCGATGGTCACATCGCC+TGG 0.470037 4.4:+7633823 None:intergenic
ACAAGGTTCATAGAACGTTT+CGG 0.473580 4.4:-7635430 MS.gene49736:intron
CAGCTTCTTTGACATGATCA+TGG 0.476704 4.4:+7635704 None:intergenic
TTGTACCGCACCAGTTGAAT+CGG 0.479326 4.4:-7634052 MS.gene49736:CDS
CGGTTTCAGCAGCAAGTCCA+CGG 0.479542 4.4:-7633893 MS.gene49736:CDS
TGGGATCAATCCTCCAATCT+TGG 0.481908 4.4:-7633916 MS.gene49736:CDS
TGCGTTGTCTGCAAGTGGTA+AGG 0.485168 4.4:+7634149 None:intergenic
ACTTCCATAAGAAAGTGAAA+TGG 0.489566 4.4:-7634092 MS.gene49736:CDS
AGATGCATCGATATGACATC+AGG 0.491452 4.4:+7634999 None:intergenic
CTTAGCCTTTATTCCGAAAG+AGG 0.493443 4.4:-7633866 MS.gene49736:CDS
GGTTTCAGCAGCAAGTCCAC+GGG 0.495177 4.4:-7633892 MS.gene49736:CDS
TGTGATAGTCGGGGTGAGCA+TGG 0.496550 4.4:-7635401 MS.gene49736:CDS
TCTGCAAGTGGTAAGGACTT+TGG 0.499740 4.4:+7634156 None:intergenic
AAGGGTGGCACCAATAACTT+TGG 0.502575 4.4:+7633954 None:intergenic
TCGATATGACATCAGGTTGT+GGG 0.503036 4.4:+7635006 None:intergenic
AAACAATGTATCATAGTGAA+TGG 0.504555 4.4:-7635043 MS.gene49736:CDS
CCAGACACAACCCAGTATCC+TGG 0.505046 4.4:+7633703 None:intergenic
GCTGAAACCGCCAAGATTGG+AGG 0.507368 4.4:+7633906 None:intergenic
ATATTTAGCGAGATACGTCT+TGG 0.512794 4.4:-7634482 MS.gene49736:CDS
CGAAGACACTCCAGGATACT+GGG 0.516395 4.4:-7633713 MS.gene49736:CDS
GACAGTCTTTCCATTGTCAC+AGG 0.517079 4.4:-7634027 MS.gene49736:CDS
ATCGATATGACATCAGGTTG+TGG 0.517095 4.4:+7635005 None:intergenic
AGAGGGCCCGAAGACACTCC+AGG 0.518785 4.4:-7633721 MS.gene49736:CDS
AAGAAGCTGTGCCATCATCA+TGG 0.519325 4.4:-7635690 MS.gene49736:CDS
CGGGGTGAGCATGGGAGGGA+AGG 0.522195 4.4:-7635392 MS.gene49736:CDS
GCCTCAGGGTCCCATGATGA+TGG 0.524754 4.4:+7635679 None:intergenic
CTAGGTGTACGCACTGGTGC+AGG 0.525023 4.4:+7633778 None:intergenic
AGTCAGATGCTGAAGGTGAA+TGG 0.525240 4.4:+7634185 None:intergenic
ATAGTCGGGGTGAGCATGGG+AGG 0.528201 4.4:-7635397 MS.gene49736:CDS
TTATTCCGAAAGAGGGAAAG+AGG 0.533936 4.4:-7633858 MS.gene49736:CDS
GTTTCAGCTACCGAGACAAT+GGG 0.535357 4.4:-7634510 MS.gene49736:CDS
GGCCTGAGATTACAATTGGA+AGG 0.538497 4.4:-7634228 MS.gene49736:CDS
TTCGGAACTCATGTGATAGT+CGG 0.541320 4.4:-7635412 MS.gene49736:CDS
CAAGATACTAAATCTTAGCC+AGG 0.545013 4.4:+7634433 None:intergenic
GTGATAGTCGGGGTGAGCAT+GGG 0.545065 4.4:-7635400 MS.gene49736:CDS
GATCAATCCTCCAATCTTGG+CGG 0.547130 4.4:-7633913 MS.gene49736:CDS
AGTTTCAGCTACCGAGACAA+TGG 0.553319 4.4:-7634511 MS.gene49736:CDS
TTAGCCTTTATTCCGAAAGA+GGG 0.554550 4.4:-7633865 MS.gene49736:CDS
GGAAGCATCAAATGAATACC+TGG 0.555372 4.4:-7634451 MS.gene49736:CDS
TTCTGATGAAAGGTAGATGT+TGG 0.558473 4.4:-7634267 MS.gene49736:intron
ACCTAGGCTTCAAAAGTATG+TGG 0.559009 4.4:-7633761 MS.gene49736:CDS
GCATTTGCGTTGTCTGCAAG+TGG 0.559908 4.4:+7634144 None:intergenic
AGACTGTCATCCGATTCAAC+TGG 0.561552 4.4:+7634042 None:intergenic
TCAAAAGTATGTGGACATAA+CGG 0.561886 4.4:-7633752 MS.gene49736:CDS
GCCTGAGATTACAATTGGAA+GGG 0.566489 4.4:-7634227 MS.gene49736:CDS
AGAAGCTGTGCCATCATCAT+GGG 0.568471 4.4:-7635689 MS.gene49736:CDS
TGGAAGGGAGAAGAAGCAAC+CGG 0.568916 4.4:-7634212 MS.gene49736:CDS
ATGGTACATAAAAGGAAGGG+TGG 0.569803 4.4:-7635074 MS.gene49736:CDS
GCTGAAGGTGAATGGCCAAC+CGG 0.573510 4.4:+7634193 None:intergenic
TGATGGAGGTCCTCAATTGG+AGG 0.577604 4.4:+7634542 None:intergenic
CTAACCTTGCCAAGGCCTCA+GGG 0.580190 4.4:+7635665 None:intergenic
AACAGACAAACCTCCAATTG+AGG 0.583441 4.4:-7634552 MS.gene49736:intron
CTCGGGTGGTTTCTGAAGGG+TGG 0.584252 4.4:+7633939 None:intergenic
AATATAGGGGCCCATTGTCT+CGG 0.585064 4.4:+7634500 None:intergenic
TATTCCGAAAGAGGGAAAGA+GGG 0.588418 4.4:-7633857 MS.gene49736:CDS
TTTATGGTACATAAAAGGAA+GGG 0.590990 4.4:-7635077 MS.gene49736:CDS
CAAATCAATACTTACAGCGA+AGG 0.591791 4.4:+7634907 None:intergenic
GAAGGTAGAGATTTATAGCA+TGG 0.594301 4.4:+7634925 None:intergenic
GTTGAATTAGAAAACTATCA+TGG 0.594595 4.4:-7635733 MS.gene49736:CDS
GGCTCATAAATCCATTTCCA+CGG 0.594804 4.4:+7634946 None:intergenic
TCTAAGTTCTAACCTTGCCA+AGG 0.597051 4.4:+7635657 None:intergenic
TGGTCGATGTATCAAAGACT+TGG 0.598827 4.4:-7635806 MS.gene49736:CDS
GCCATCATCATGGGACCCTG+AGG 0.604238 4.4:-7635680 MS.gene49736:CDS
ATTGGAGGATTGATCCCACT+CGG 0.605159 4.4:+7633921 None:intergenic
CCTTCAGAAACCACCCGAGT+GGG 0.608119 4.4:-7633935 MS.gene49736:CDS
AAGAGGGGTCATCCAAAACC+AGG 0.612754 4.4:-7633841 MS.gene49736:CDS
ACGTATCTCGCTAAATATAG+GGG 0.615421 4.4:+7634487 None:intergenic
TGAAGCCTAGGTGTACGCAC+TGG 0.617438 4.4:+7633772 None:intergenic
TAGTCGGGGTGAGCATGGGA+GGG 0.618685 4.4:-7635396 MS.gene49736:CDS
AGGGAGAAGAAGCAACCGGT+TGG 0.618702 4.4:-7634208 MS.gene49736:CDS
AAACCAGGCGATGTGACCAT+CGG 0.618841 4.4:-7633826 MS.gene49736:CDS
CCACTCGGGTGGTTTCTGAA+GGG 0.624339 4.4:+7633936 None:intergenic
GAGGATTGATCCCACTCGGG+TGG 0.625847 4.4:+7633925 None:intergenic
AGAATATGTAGTAGAACCGA+TGG 0.629598 4.4:+7633810 None:intergenic
GTAAAGAAGTCAGATGCTGA+AGG 0.633934 4.4:+7634178 None:intergenic
GTCATCCGATTCAACTGGTG+CGG 0.637991 4.4:+7634047 None:intergenic
CCCTTCAGAAACCACCCGAG+TGG 0.639822 4.4:-7633936 MS.gene49736:CDS
GACATAACGGAAATGATGAG+AGG 0.645131 4.4:-7633739 MS.gene49736:CDS
GTTTCAGCAGCAAGTCCACG+GGG 0.645716 4.4:-7633891 MS.gene49736:CDS
TCAATAGTGAATACTTAACA+AGG 0.648499 4.4:+7633644 None:intergenic
GGGACCCTGAGGCCTTGGCA+AGG 0.651590 4.4:-7635669 MS.gene49736:intron
CTGCACCAGTGCGTACACCT+AGG 0.659104 4.4:-7633777 MS.gene49736:CDS
ACATAACGGAAATGATGAGA+GGG 0.659425 4.4:-7633738 MS.gene49736:CDS
CGGAACTCATGTGATAGTCG+GGG 0.661883 4.4:-7635410 MS.gene49736:CDS
TTGGAGGATTGATCCCACTC+GGG 0.664867 4.4:+7633922 None:intergenic
TTCAACAAAAGTGATGTCAG+AGG 0.667680 4.4:+7634972 None:intergenic
ATTCCGAAAGAGGGAAAGAG+GGG 0.674087 4.4:-7633856 MS.gene49736:CDS
TTTCAGCAGCAAGTCCACGG+GGG 0.749568 4.4:-7633890 MS.gene49736:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAAAAAATATTTCAT+TGG - chr4.4:7634381-7634400 MS.gene49736:intron 10.0%
!! TTAAAAAAAATATTTCATTG+GGG - chr4.4:7634383-7634402 MS.gene49736:intron 10.0%
!!! CAATGAAATATTTTTTTTAA+TGG + chr4.4:7634383-7634402 None:intergenic 10.0%
!! AATTTCATTTCAAAATAAGA+TGG + chr4.4:7634331-7634350 None:intergenic 15.0%
!! TATATCACTTTCTTAAAATT+AGG + chr4.4:7634669-7634688 None:intergenic 15.0%
!! ATTGTATTTATGTAAAGCTT+AGG + chr4.4:7635091-7635110 None:intergenic 20.0%
!! TCTGTTATAAACATTATACA+AGG - chr4.4:7634808-7634827 MS.gene49736:intron 20.0%
!! TTTCAAAATAAGATGGTTAA+AGG + chr4.4:7634324-7634343 None:intergenic 20.0%
!!! AATTTATACTGATTCATACA+AGG - chr4.4:7634048-7634067 MS.gene49736:CDS 20.0%
!!! ATCTTTTTATGGTACATAAA+AGG - chr4.4:7634413-7634432 MS.gene49736:CDS 20.0%
! AAACAATGTATCATAGTGAA+TGG - chr4.4:7634452-7634471 MS.gene49736:CDS 25.0%
! AACATTATACAAGGATAGAT+CGG - chr4.4:7634817-7634836 MS.gene49736:intron 25.0%
! ACCATTAACTATCATTCAAA+GGG - chr4.4:7634724-7634743 MS.gene49736:intron 25.0%
! AGACTTAAGTAACAAAAAAG+AGG - chr4.4:7634253-7634272 MS.gene49736:CDS 25.0%
! ATCTGAATATTCCAAAGATT+TGG - chr4.4:7633923-7633942 MS.gene49736:CDS 25.0%
! GGAATATTCAGATAGAAATT+TGG + chr4.4:7633916-7633935 None:intergenic 25.0%
! GTTGAATTAGAAAACTATCA+TGG - chr4.4:7633762-7633781 MS.gene49736:CDS 25.0%
! TACCATTAACTATCATTCAA+AGG - chr4.4:7634723-7634742 MS.gene49736:intron 25.0%
! TCAATAGTGAATACTTAACA+AGG + chr4.4:7635854-7635873 None:intergenic 25.0%
! TTTATGGTACATAAAAGGAA+GGG - chr4.4:7634418-7634437 MS.gene49736:CDS 25.0%
!! AACACACCACATTTTTATTA+TGG - chr4.4:7634277-7634296 MS.gene49736:intron 25.0%
!! TAGTATCCAAAAACTTTTGA+AGG - chr4.4:7634175-7634194 MS.gene49736:CDS 25.0%
!! TTTTATGGTACATAAAAGGA+AGG - chr4.4:7634417-7634436 MS.gene49736:CDS 25.0%
!!! AAAAGTTTTTGGATACTAGT+TGG + chr4.4:7634173-7634192 None:intergenic 25.0%
!!! AATTTCTAGTTATAGAGCAA+TGG + chr4.4:7633953-7633972 None:intergenic 25.0%
!!! TTCAATTCTGAGATGTTTAA+TGG + chr4.4:7634856-7634875 None:intergenic 25.0%
!!! TTTTTTCATCTTCTGATGAA+AGG - chr4.4:7635218-7635237 MS.gene49736:intron 25.0%
AACTACGAATCTCTGAATAT+TGG - chr4.4:7635188-7635207 MS.gene49736:intron 30.0%
AATAACACTATGCAGTTCAA+GGG + chr4.4:7633865-7633884 None:intergenic 30.0%
AATGTATCATAGTGAATGGT+TGG - chr4.4:7634456-7634475 MS.gene49736:CDS 30.0%
ACATTATACAAGGATAGATC+GGG - chr4.4:7634818-7634837 MS.gene49736:intron 30.0%
ACTTCCATAAGAAAGTGAAA+TGG - chr4.4:7635403-7635422 MS.gene49736:CDS 30.0%
ATGCACATTAAAAATGCAAG+AGG + chr4.4:7635128-7635147 None:intergenic 30.0%
ATTAAGTCTCTTGCTTATGA+TGG - chr4.4:7633717-7633736 MS.gene49736:CDS 30.0%
GCAGATTATGTCAAGAAAAA+TGG - chr4.4:7634698-7634717 MS.gene49736:intron 30.0%
GGAATGCCATAATAAAAATG+TGG + chr4.4:7634286-7634305 None:intergenic 30.0%
TAAAGGTAGTATAGTGCTAA+AGG + chr4.4:7634307-7634326 None:intergenic 30.0%
TAATAACACTATGCAGTTCA+AGG + chr4.4:7633866-7633885 None:intergenic 30.0%
TCCCTTTGAATGATAGTTAA+TGG + chr4.4:7634728-7634747 None:intergenic 30.0%
TGAGATGTTTAATGGAATAC+TGG + chr4.4:7634848-7634867 None:intergenic 30.0%
TGCACATTAAAAATGCAAGA+GGG + chr4.4:7635127-7635146 None:intergenic 30.0%
TGGCTAAGATTTAGTATCTT+GGG - chr4.4:7635064-7635083 MS.gene49736:CDS 30.0%
! CTGTTTCCTTCAAAAGTTTT+TGG + chr4.4:7634184-7634203 None:intergenic 30.0%
! TCAAAAGTATGTGGACATAA+CGG - chr4.4:7635743-7635762 MS.gene49736:CDS 30.0%
!!! AAAAGAAGTGTCTCCTTTTA+CGG - chr4.4:7635508-7635527 MS.gene49736:intron 30.0%
ACAAGGTTCATAGAACGTTT+CGG - chr4.4:7634065-7634084 MS.gene49736:CDS 35.0%
ACGTATCTCGCTAAATATAG+GGG + chr4.4:7635011-7635030 None:intergenic 35.0%
AGAATATGTAGTAGAACCGA+TGG + chr4.4:7635688-7635707 None:intergenic 35.0%
AGACGTATCTCGCTAAATAT+AGG + chr4.4:7635013-7635032 None:intergenic 35.0%
AGCTCCATTTCACTTTCTTA+TGG + chr4.4:7635410-7635429 None:intergenic 35.0%
ATATTTAGCGAGATACGTCT+TGG - chr4.4:7635013-7635032 MS.gene49736:CDS 35.0%
CAAAGCTTTCTGCACATAAT+GGG - chr4.4:7635817-7635836 MS.gene49736:CDS 35.0%
CAAATCAATACTTACAGCGA+AGG + chr4.4:7634591-7634610 None:intergenic 35.0%
CAAGATACTAAATCTTAGCC+AGG + chr4.4:7635065-7635084 None:intergenic 35.0%
CACAGTTCAATTTGCATCAT+AGG + chr4.4:7633989-7634008 None:intergenic 35.0%
CTGGCTAAGATTTAGTATCT+TGG - chr4.4:7635063-7635082 MS.gene49736:CDS 35.0%
GAAACTCGAAAAATTGATGG+AGG + chr4.4:7634970-7634989 None:intergenic 35.0%
GAAGGTAGAGATTTATAGCA+TGG + chr4.4:7634573-7634592 None:intergenic 35.0%
GACGTATCTCGCTAAATATA+GGG + chr4.4:7635012-7635031 None:intergenic 35.0%
GCACATTAAAAATGCAAGAG+GGG + chr4.4:7635126-7635145 None:intergenic 35.0%
GCTGAAACTCGAAAAATTGA+TGG + chr4.4:7634973-7634992 None:intergenic 35.0%
GTCATTTCTGTGCTTCATTT+GGG - chr4.4:7633661-7633680 MS.gene49736:CDS 35.0%
TGATGCAAATTGAACTGTGA+TGG - chr4.4:7633990-7634009 MS.gene49736:CDS 35.0%
TTCAACAAAAGTGATGTCAG+AGG + chr4.4:7634526-7634545 None:intergenic 35.0%
TTCTGATGAAAGGTAGATGT+TGG - chr4.4:7635228-7635247 MS.gene49736:intron 35.0%
TTGTCTGTTTCAGTTATCAC+AGG + chr4.4:7634932-7634951 None:intergenic 35.0%
TTGTTGAATATCCGTGGAAA+TGG - chr4.4:7634538-7634557 MS.gene49736:CDS 35.0%
! AATTGGCCTGAGATTACAAT+TGG - chr4.4:7635263-7635282 MS.gene49736:CDS 35.0%
! ACATAACGGAAATGATGAGA+GGG - chr4.4:7635757-7635776 MS.gene49736:CDS 35.0%
! ACTTCTTTTCAACTTGCAAC+TGG + chr4.4:7635497-7635516 None:intergenic 35.0%
! CTGCATAGTGTTATTATGTG+TGG - chr4.4:7633870-7633889 MS.gene49736:CDS 35.0%
! CTTCTTTTCAACTTGCAACT+GGG + chr4.4:7635496-7635515 None:intergenic 35.0%
! TACTAGCACGTTGATAGAAT+GGG + chr4.4:7635168-7635187 None:intergenic 35.0%
! TTAATGTGCATTTTGCGAGT+TGG - chr4.4:7635137-7635156 MS.gene49736:intron 35.0%
! TTACTAGCACGTTGATAGAA+TGG + chr4.4:7635169-7635188 None:intergenic 35.0%
! TTAGCCTTTATTCCGAAAGA+GGG - chr4.4:7635630-7635649 MS.gene49736:intron 35.0%
!! GTTGGTAATAGACCAGTAAT+TGG - chr4.4:7635246-7635265 MS.gene49736:CDS 35.0%
!! TCACTTTTGTTGAATATCCG+TGG - chr4.4:7634532-7634551 MS.gene49736:CDS 35.0%
AACAGACAAACCTCCAATTG+AGG - chr4.4:7634943-7634962 MS.gene49736:CDS 40.0%
AACCATGAAATGCGTCTTGT+AGG - chr4.4:7633624-7633643 MS.gene49736:CDS 40.0%
AATTGATGGAGGTCCTCAAT+TGG + chr4.4:7634959-7634978 None:intergenic 40.0%
AGTCTCTTGCTTATGATGGT+TGG - chr4.4:7633721-7633740 MS.gene49736:CDS 40.0%
ATGGTACATAAAAGGAAGGG+TGG - chr4.4:7634421-7634440 MS.gene49736:CDS 40.0%
CAGCTTCTTTGACATGATCA+TGG + chr4.4:7633794-7633813 None:intergenic 40.0%
CTTTCCCTCTTTCGGAATAA+AGG + chr4.4:7635637-7635656 None:intergenic 40.0%
GCAAAGCTTTCTGCACATAA+TGG - chr4.4:7635816-7635835 MS.gene49736:CDS 40.0%
GCAATGGATGTCCAAATCTT+TGG + chr4.4:7633937-7633956 None:intergenic 40.0%
GCCTGAGATTACAATTGGAA+GGG - chr4.4:7635268-7635287 MS.gene49736:CDS 40.0%
GGCTCATAAATCCATTTCCA+CGG + chr4.4:7634552-7634571 None:intergenic 40.0%
GGTCATTTCTGTGCTTCATT+TGG - chr4.4:7633660-7633679 MS.gene49736:CDS 40.0%
GTAAAGAAGTCAGATGCTGA+AGG + chr4.4:7635320-7635339 None:intergenic 40.0%
TATTCCGAAAGAGGGAAAGA+GGG - chr4.4:7635638-7635657 MS.gene49736:intron 40.0%
TCCCTTCCAATTGTAATCTC+AGG + chr4.4:7635272-7635291 None:intergenic 40.0%
TGGTCGATGTATCAAAGACT+TGG - chr4.4:7633689-7633708 MS.gene49736:CDS 40.0%
TGTAATCTCAGGCCAATTAC+TGG + chr4.4:7635261-7635280 None:intergenic 40.0%
TTATTCCGAAAGAGGGAAAG+AGG - chr4.4:7635637-7635656 MS.gene49736:intron 40.0%
TTCGGAACTCATGTGATAGT+CGG - chr4.4:7634083-7634102 MS.gene49736:CDS 40.0%
! ACCTAGGCTTCAAAAGTATG+TGG - chr4.4:7635734-7635753 MS.gene49736:CDS 40.0%
! AGATACGTCTTGGTTCTTAC+TGG - chr4.4:7635023-7635042 MS.gene49736:CDS 40.0%
! AGATGCATCGATATGACATC+AGG + chr4.4:7634499-7634518 None:intergenic 40.0%
! ATCGATATGACATCAGGTTG+TGG + chr4.4:7634493-7634512 None:intergenic 40.0%
! CTTAGCCTTTATTCCGAAAG+AGG - chr4.4:7635629-7635648 MS.gene49736:intron 40.0%
! GACATAACGGAAATGATGAG+AGG - chr4.4:7635756-7635775 MS.gene49736:CDS 40.0%
! GGGGTTGCAGAATCTTTTTA+TGG - chr4.4:7634402-7634421 MS.gene49736:intron 40.0%
! TCGATATGACATCAGGTTGT+GGG + chr4.4:7634492-7634511 None:intergenic 40.0%
! TCTAAGTTCTAACCTTGCCA+AGG + chr4.4:7633841-7633860 None:intergenic 40.0%
! TGTGCTTCATTTGGGTTATC+TGG - chr4.4:7633669-7633688 MS.gene49736:CDS 40.0%
!! GGAAGCATCAAATGAATACC+TGG - chr4.4:7635044-7635063 MS.gene49736:CDS 40.0%
!!! TCCACATACTTTTGAAGCCT+AGG + chr4.4:7635738-7635757 None:intergenic 40.0%
AACAGCTAGCACGAAGTTCA+TGG - chr4.4:7634199-7634218 MS.gene49736:CDS 45.0%
AAGAAGCTGTGCCATCATCA+TGG - chr4.4:7633805-7633824 MS.gene49736:CDS 45.0%
AAGGGTGGCACCAATAACTT+TGG + chr4.4:7635544-7635563 None:intergenic 45.0%
AATATAGGGGCCCATTGTCT+CGG + chr4.4:7634998-7635017 None:intergenic 45.0%
AGAAGCTGTGCCATCATCAT+GGG - chr4.4:7633806-7633825 MS.gene49736:CDS 45.0%
AGACTGTCATCCGATTCAAC+TGG + chr4.4:7635456-7635475 None:intergenic 45.0%
AGTCAGATGCTGAAGGTGAA+TGG + chr4.4:7635313-7635332 None:intergenic 45.0%
AGTTTCAGCTACCGAGACAA+TGG - chr4.4:7634984-7635003 MS.gene49736:CDS 45.0%
ATTCCGAAAGAGGGAAAGAG+GGG - chr4.4:7635639-7635658 MS.gene49736:intron 45.0%
ATTGGAGGATTGATCCCACT+CGG + chr4.4:7635577-7635596 None:intergenic 45.0%
CTCCTACAAGACGCATTTCA+TGG + chr4.4:7633629-7633648 None:intergenic 45.0%
CTGCGCTTCTCCAAAGTTAT+TGG - chr4.4:7635531-7635550 MS.gene49736:intron 45.0%
GACAGTCTTTCCATTGTCAC+AGG - chr4.4:7635468-7635487 MS.gene49736:intron 45.0%
GATCAATCCTCCAATCTTGG+CGG - chr4.4:7635582-7635601 MS.gene49736:intron 45.0%
GGCCTGAGATTACAATTGGA+AGG - chr4.4:7635267-7635286 MS.gene49736:CDS 45.0%
GTTTCAGCTACCGAGACAAT+GGG - chr4.4:7634985-7635004 MS.gene49736:CDS 45.0%
TCGGAACTCATGTGATAGTC+GGG - chr4.4:7634084-7634103 MS.gene49736:CDS 45.0%
TCTGCAAGTGGTAAGGACTT+TGG + chr4.4:7635342-7635361 None:intergenic 45.0%
TGGGATCAATCCTCCAATCT+TGG - chr4.4:7635579-7635598 MS.gene49736:intron 45.0%
TTGTACCGCACCAGTTGAAT+CGG - chr4.4:7635443-7635462 MS.gene49736:intron 45.0%
!! ATTAAAAAAAATATTTCATT+GGG - chr4.4:7634382-7634401 MS.gene49736:intron 5.0%
AAACCAGGCGATGTGACCAT+CGG - chr4.4:7635669-7635688 MS.gene49736:intron 50.0%
AAGAGGGGTCATCCAAAACC+AGG - chr4.4:7635654-7635673 MS.gene49736:intron 50.0%
AATAAAGGCTAAGACCCCCG+TGG + chr4.4:7635622-7635641 None:intergenic 50.0%
ATGCAAGAGGGGAGACTTAC+TGG + chr4.4:7635115-7635134 None:intergenic 50.0%
CGAAGACACTCCAGGATACT+GGG - chr4.4:7635782-7635801 MS.gene49736:CDS 50.0%
CGGAACTCATGTGATAGTCG+GGG - chr4.4:7634085-7634104 MS.gene49736:CDS 50.0%
CTTGTAGGAGACACTGCATC+TGG - chr4.4:7633639-7633658 MS.gene49736:CDS 50.0%
GCATTTGCGTTGTCTGCAAG+TGG + chr4.4:7635354-7635373 None:intergenic 50.0%
GTCATCCGATTCAACTGGTG+CGG + chr4.4:7635451-7635470 None:intergenic 50.0%
TGACCCCTCTTTCCCTCTTT+CGG + chr4.4:7635645-7635664 None:intergenic 50.0%
TGATGGAGGTCCTCAATTGG+AGG + chr4.4:7634956-7634975 None:intergenic 50.0%
TGCGTTGTCTGCAAGTGGTA+AGG + chr4.4:7635349-7635368 None:intergenic 50.0%
TGGAAGGGAGAAGAAGCAAC+CGG - chr4.4:7635283-7635302 MS.gene49736:CDS 50.0%
TTGGAGGATTGATCCCACTC+GGG + chr4.4:7635576-7635595 None:intergenic 50.0%
! ATGGTCACATCGCCTGGTTT+TGG + chr4.4:7635669-7635688 None:intergenic 50.0%
! CAGTATCCTGGAGTGTCTTC+GGG + chr4.4:7635783-7635802 None:intergenic 50.0%
! CCAGTATCCTGGAGTGTCTT+CGG + chr4.4:7635784-7635803 None:intergenic 50.0%
AGGGAGAAGAAGCAACCGGT+TGG - chr4.4:7635287-7635306 MS.gene49736:CDS 55.0%
CAACTGGGCTCCTGTGACAA+TGG + chr4.4:7635481-7635500 None:intergenic 55.0%
CCACTCGGGTGGTTTCTGAA+GGG + chr4.4:7635562-7635581 None:intergenic 55.0%
CCAGACACAACCCAGTATCC+TGG + chr4.4:7635795-7635814 None:intergenic 55.0%
CCAGGATACTGGGTTGTGTC+TGG - chr4.4:7635792-7635811 MS.gene49736:CDS 55.0%
CCGAAGACACTCCAGGATAC+TGG - chr4.4:7635781-7635800 MS.gene49736:CDS 55.0%
CCTTCAGAAACCACCCGAGT+GGG - chr4.4:7635560-7635579 MS.gene49736:intron 55.0%
CGGTTTCAGCAGCAAGTCCA+CGG - chr4.4:7635602-7635621 MS.gene49736:intron 55.0%
CTAACCTTGCCAAGGCCTCA+GGG + chr4.4:7633833-7633852 None:intergenic 55.0%
GCTGAAACCGCCAAGATTGG+AGG + chr4.4:7635592-7635611 None:intergenic 55.0%
GCTGAAGGTGAATGGCCAAC+CGG + chr4.4:7635305-7635324 None:intergenic 55.0%
GCTGCTGAAACCGCCAAGAT+TGG + chr4.4:7635595-7635614 None:intergenic 55.0%
GGTTTCAGCAGCAAGTCCAC+GGG - chr4.4:7635603-7635622 MS.gene49736:intron 55.0%
GTGATAGTCGGGGTGAGCAT+GGG - chr4.4:7634095-7634114 MS.gene49736:CDS 55.0%
GTTTCAGCAGCAAGTCCACG+GGG - chr4.4:7635604-7635623 MS.gene49736:intron 55.0%
TCTAACCTTGCCAAGGCCTC+AGG + chr4.4:7633834-7633853 None:intergenic 55.0%
TGAAGCCTAGGTGTACGCAC+TGG + chr4.4:7635726-7635745 None:intergenic 55.0%
TGTGATAGTCGGGGTGAGCA+TGG - chr4.4:7634094-7634113 MS.gene49736:CDS 55.0%
TTTCAGCAGCAAGTCCACGG+GGG - chr4.4:7635605-7635624 MS.gene49736:intron 55.0%
! TGGAGAAGCGCAGCCGTAAA+AGG + chr4.4:7635524-7635543 None:intergenic 55.0%
ATAGTCGGGGTGAGCATGGG+AGG - chr4.4:7634098-7634117 MS.gene49736:CDS 60.0%
ATCATGGGACCCTGAGGCCT+TGG - chr4.4:7633821-7633840 MS.gene49736:CDS 60.0%
CCCACTCGGGTGGTTTCTGA+AGG + chr4.4:7635563-7635582 None:intergenic 60.0%
CCCTTCAGAAACCACCCGAG+TGG - chr4.4:7635559-7635578 MS.gene49736:intron 60.0%
CTGCACCAGTGCGTACACCT+AGG - chr4.4:7635718-7635737 MS.gene49736:CDS 60.0%
GAACCGATGGTCACATCGCC+TGG + chr4.4:7635675-7635694 None:intergenic 60.0%
GAGGATTGATCCCACTCGGG+TGG + chr4.4:7635573-7635592 None:intergenic 60.0%
GCCATCATCATGGGACCCTG+AGG - chr4.4:7633815-7633834 MS.gene49736:CDS 60.0%
GCCTCAGGGTCCCATGATGA+TGG + chr4.4:7633819-7633838 None:intergenic 60.0%
TAGTCGGGGTGAGCATGGGA+GGG - chr4.4:7634099-7634118 MS.gene49736:CDS 60.0%
! CTAGGTGTACGCACTGGTGC+AGG + chr4.4:7635720-7635739 None:intergenic 60.0%
! CTCGGGTGGTTTCTGAAGGG+TGG + chr4.4:7635559-7635578 None:intergenic 60.0%
AGAGGGCCCGAAGACACTCC+AGG - chr4.4:7635774-7635793 MS.gene49736:CDS 65.0%
CGGGGTGAGCATGGGAGGGA+AGG - chr4.4:7634103-7634122 MS.gene49736:CDS 70.0%
GGGACCCTGAGGCCTTGGCA+AGG - chr4.4:7633826-7633845 MS.gene49736:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 7633609 7635908 7633609 ID=MS.gene49736
chr4.4 mRNA 7633609 7635908 7633609 ID=MS.gene49736.t1;Parent=MS.gene49736
chr4.4 exon 7635670 7635908 7635670 ID=MS.gene49736.t1.exon1;Parent=MS.gene49736.t1
chr4.4 CDS 7635670 7635908 7635670 ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1
chr4.4 exon 7635243 7635447 7635243 ID=MS.gene49736.t1.exon2;Parent=MS.gene49736.t1
chr4.4 CDS 7635243 7635447 7635243 ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1
chr4.4 exon 7634922 7635105 7634922 ID=MS.gene49736.t1.exon3;Parent=MS.gene49736.t1
chr4.4 CDS 7634922 7635105 7634922 ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1
chr4.4 exon 7634403 7634569 7634403 ID=MS.gene49736.t1.exon4;Parent=MS.gene49736.t1
chr4.4 CDS 7634403 7634569 7634403 ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1
chr4.4 exon 7633609 7634277 7633609 ID=MS.gene49736.t1.exon5;Parent=MS.gene49736.t1
chr4.4 CDS 7633609 7634277 7633609 ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1
Gene Sequence

>MS.gene49736

ATGTTGCAGCACTTCAACCATGAAATGCGTCTTGTAGGAGACACTGCATCTGGTCATTTCTGTGCTTCATTTGGGTTATCTGGTCGATGTATCAAAGACTTGGCTTCTATTAAGTCTCTTGCTTATGATGGTTGGTTCATCAAACGCTATGCTGTTGAATTAGAAAACTATCATGGTGAACTCCATGATCATGTCAAAGAAGCTGTGCCATCATCATGGGACCCTGAGGCCTTGGCAAGGTTAGAACTTAGAACCCTTGAACTGCATAGTGTTATTATGTGTGGACACTTAACTTAATCACACTCCAAATTTCTATCTGAATATTCCAAAGATTTGGACATCCATTGCTCTATAACTAGAAATTTTGTAAGTTCTTTCCTATGATGCAAATTGAACTGTGATGGATGACATTAGTTAAATTATTGACAAATCATAAAATAATTTATACTGATTCATACAAGGTTCATAGAACGTTTCGGAACTCATGTGATAGTCGGGGTGAGCATGGGAGGGAAGGATGTGTTTTATGTTAGACAAGAAGATACATCAGATATCAGTGATCCAACTAGTATCCAAAAACTTTTGAAGGAAACAGCTAGCACGAAGTTCATGGATTCTGCTGATAATCATCGTTCAGCTTCTGAAGACTTAAGTAACAAAAAAGAGGTAACACACCACATTTTTATTATGGCATTCCTTTAGCACTATACTACCTTTAACCATCTTATTTTGAAATGAAATTATTAAATTTTGAAAAAACAGATGCATCATCCATTAAAAAAAATATTTCATTGGGGTTGCAGAATCTTTTTATGGTACATAAAAGGAAGGGTGGAAGCAGTAAAACAATGTATCATAGTGAATGGTTGGATACTATTGACCCACAACCTGATGTCATATCGATGCATCTTCTTCCTCTGACATCACTTTTGTTGAATATCCGTGGAAATGGATTTATGAGCCATGCTATAAATCTCTACCTTCGCTGTAAGTATTGATTTGAGTTTTTTTGTTGCACAAGTATGTGACAGAAATGTAAATTGTTCTTTTGATTGTACCTAATTTTAAGAAAGTGATATAAAAAATGTAGCAGATTATGTCAAGAAAAATGGTATACCATTAACTATCATTCAAAGGGAACACACTTTATCACTTTTTCTTGTCTAGCACACACGAAGAAATTAGTGAGTTGCGCTCTTTCTGTTATAAACATTATACAAGGATAGATCGGGTAAACCAGTATTCCATTAAACATCTCAGAATTGAATATAAATATATAATACGCTCTTTCTGAAACTGATTTTGCTGAATCTGCAATAACCTGTGATAACTGAAACAGACAAACCTCCAATTGAGGACCTCCATCAATTTTTCGAGTTTCAGCTACCGAGACAATGGGCCCCTATATTTAGCGAGATACGTCTTGGTTCTTACTGGAAGCATCAAATGAATACCTGGCTAAGATTTAGTATCTTGGGTCCTAAGCTTTACATAAATACAATTCCAGTAAGTCTCCCCTCTTGCATTTTTAATGTGCATTTTGCGAGTTGGTGTTTCCCATTCTATCAACGTGCTAGTAAACTACGAATCTCTGAATATTGGCTCTTTTTTTTTTCATCTTCTGATGAAAGGTAGATGTTGGTAATAGACCAGTAATTGGCCTGAGATTACAATTGGAAGGGAGAAGAAGCAACCGGTTGGCCATTCACCTTCAGCATCTGACTTCTTTACCAAAGTCCTTACCACTTGCAGACAACGCAAATGCTTATTTGTCTTGTGACTCATACAGCTGCAACTTCCATAAGAAAGTGAAATGGAGCTGCTTTTCATATGTTTGTACCGCACCAGTTGAATCGGATGACAGTCTTTCCATTGTCACAGGAGCCCAGTTGCAAGTTGAAAAGAAGTGTCTCCTTTTACGGCTGCGCTTCTCCAAAGTTATTGGTGCCACCCTTCAGAAACCACCCGAGTGGGATCAATCCTCCAATCTTGGCGGTTTCAGCAGCAAGTCCACGGGGGTCTTAGCCTTTATTCCGAAAGAGGGAAAGAGGGGTCATCCAAAACCAGGCGATGTGACCATCGGTTCTACTACATATTCTGCTGCACTACCTGCACCAGTGCGTACACCTAGGCTTCAAAAGTATGTGGACATAACGGAAATGATGAGAGGGCCCGAAGACACTCCAGGATACTGGGTTGTGTCTGGTGCAAAGCTTTCTGCACATAATGGGAAAATATATCTCCTTGTTAAGTATTCACTATTGAACTTTGTTATGCAGTGTGAAACTGAAGCTTCATAG

Protein sequence

>MS.gene49736.t1

MLQHFNHEMRLVGDTASGHFCASFGLSGRCIKDLASIKSLAYDGWFIKRYAVELENYHGELHDHVKEAVPSSWDPEALARFIERFGTHVIVGVSMGGKDVFYVRQEDTSDISDPTSIQKLLKETASTKFMDSADNHRSASEDLSNKKENLFMVHKRKGGSSKTMYHSEWLDTIDPQPDVISMHLLPLTSLLLNIRGNGFMSHAINLYLRYKPPIEDLHQFFEFQLPRQWAPIFSEIRLGSYWKHQMNTWLRFSILGPKLYINTIPVDVGNRPVIGLRLQLEGRRSNRLAIHLQHLTSLPKSLPLADNANAYLSCDSYSCNFHKKVKWSCFSYVCTAPVESDDSLSIVTGAQLQVEKKCLLLRLRFSKVIGATLQKPPEWDQSSNLGGFSSKSTGVLAFIPKEGKRGHPKPGDVTIGSTTYSAALPAPVRTPRLQKYVDITEMMRGPEDTPGYWVVSGAKLSAHNGKIYLLVKYSLLNFVMQCETEAS