Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49736.t1 | XP_003630393.1 | 98.4 | 487 | 8 | 0 | 1 | 487 | 89 | 575 | 2.90E-283 | 983.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49736.t1 | Q9STW5 | 49.9 | 511 | 221 | 5 | 1 | 480 | 89 | 595 | 4.1e-137 | 489.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49736.t1 | G7LFS5 | 98.4 | 487 | 8 | 0 | 1 | 487 | 89 | 575 | 2.1e-283 | 983.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049409 | MS.gene49736 | 0.810977 | 8.81E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49736.t1 | MTR_8g095110 | 98.357 | 487 | 8 | 0 | 1 | 487 | 89 | 575 | 0.0 | 1001 |
MS.gene49736.t1 | MTR_8g095140 | 78.243 | 478 | 104 | 0 | 1 | 478 | 100 | 577 | 0.0 | 790 |
MS.gene49736.t1 | MTR_8g095150 | 74.530 | 479 | 109 | 3 | 1 | 478 | 87 | 553 | 0.0 | 716 |
MS.gene49736.t1 | MTR_8g095130 | 71.311 | 488 | 99 | 5 | 24 | 487 | 4 | 474 | 0.0 | 680 |
MS.gene49736.t1 | MTR_2g005730 | 52.063 | 509 | 214 | 5 | 1 | 480 | 90 | 597 | 1.36e-179 | 517 |
MS.gene49736.t1 | MTR_8g095090 | 47.601 | 521 | 234 | 7 | 1 | 487 | 1 | 516 | 1.39e-156 | 455 |
MS.gene49736.t1 | MTR_8g095090 | 47.601 | 521 | 234 | 7 | 1 | 487 | 84 | 599 | 2.09e-155 | 455 |
MS.gene49736.t1 | MTR_4g088500 | 42.639 | 523 | 256 | 7 | 1 | 481 | 96 | 616 | 2.66e-137 | 409 |
MS.gene49736.t1 | MTR_8g097210 | 37.643 | 526 | 278 | 9 | 1 | 478 | 1 | 524 | 2.41e-110 | 337 |
MS.gene49736.t1 | MTR_8g097210 | 37.643 | 526 | 278 | 9 | 1 | 478 | 95 | 618 | 4.76e-109 | 337 |
MS.gene49736.t1 | MTR_2g017740 | 38.586 | 495 | 264 | 8 | 1 | 478 | 95 | 566 | 2.50e-108 | 333 |
MS.gene49736.t1 | MTR_3g084930 | 35.526 | 532 | 286 | 9 | 1 | 478 | 91 | 619 | 2.85e-99 | 311 |
MS.gene49736.t1 | MTR_8g105700 | 36.770 | 514 | 248 | 10 | 1 | 477 | 80 | 553 | 1.83e-97 | 305 |
MS.gene49736.t1 | MTR_2g005730 | 48.387 | 310 | 135 | 3 | 1 | 286 | 90 | 398 | 1.26e-94 | 294 |
MS.gene49736.t1 | MTR_7g116350 | 37.123 | 431 | 188 | 11 | 65 | 481 | 443 | 804 | 1.98e-70 | 239 |
MS.gene49736.t1 | MTR_4g027860 | 38.395 | 349 | 178 | 7 | 147 | 478 | 78 | 406 | 5.99e-70 | 229 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene49736.t1 | AT4G24290 | 49.709 | 515 | 224 | 5 | 1 | 484 | 89 | 599 | 3.90e-173 | 500 |
MS.gene49736.t1 | AT4G24290 | 49.709 | 515 | 224 | 5 | 1 | 484 | 89 | 599 | 3.90e-173 | 500 |
MS.gene49736.t1 | AT1G28380 | 44.084 | 524 | 243 | 11 | 1 | 481 | 92 | 608 | 2.80e-131 | 394 |
MS.gene49736.t1 | AT1G29690 | 38.911 | 496 | 254 | 12 | 1 | 478 | 97 | 561 | 2.17e-100 | 312 |
MS.gene49736.t1 | AT1G14780 | 35.140 | 535 | 283 | 16 | 1 | 476 | 89 | 618 | 7.07e-91 | 290 |
MS.gene49736.t1 | AT4G24290 | 42.972 | 249 | 115 | 3 | 1 | 223 | 89 | 336 | 2.09e-60 | 202 |
Find 128 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCATTTCTGTGCTTCATT+TGG | 0.229180 | 4.4:-7635835 | MS.gene49736:CDS |
CTGCGCTTCTCCAAAGTTAT+TGG | 0.250969 | 4.4:-7633964 | MS.gene49736:CDS |
CTTTCCCTCTTTCGGAATAA+AGG | 0.265281 | 4.4:+7633861 | None:intergenic |
TGACCCCTCTTTCCCTCTTT+CGG | 0.276599 | 4.4:+7633853 | None:intergenic |
TGTGCTTCATTTGGGTTATC+TGG | 0.301827 | 4.4:-7635826 | MS.gene49736:CDS |
GTCATTTCTGTGCTTCATTT+GGG | 0.313321 | 4.4:-7635834 | MS.gene49736:CDS |
AGACGTATCTCGCTAAATAT+AGG | 0.317937 | 4.4:+7634485 | None:intergenic |
AGCTCCATTTCACTTTCTTA+TGG | 0.318511 | 4.4:+7634088 | None:intergenic |
CCAGTATCCTGGAGTGTCTT+CGG | 0.320923 | 4.4:+7633714 | None:intergenic |
GCAAAGCTTTCTGCACATAA+TGG | 0.328407 | 4.4:-7633679 | MS.gene49736:CDS |
ATGGTCACATCGCCTGGTTT+TGG | 0.329583 | 4.4:+7633829 | None:intergenic |
CTCCTACAAGACGCATTTCA+TGG | 0.331088 | 4.4:+7635869 | None:intergenic |
CCGAAGACACTCCAGGATAC+TGG | 0.331869 | 4.4:-7633714 | MS.gene49736:CDS |
TGGAGAAGCGCAGCCGTAAA+AGG | 0.346124 | 4.4:+7633974 | None:intergenic |
CTGGCTAAGATTTAGTATCT+TGG | 0.347933 | 4.4:-7634432 | MS.gene49736:CDS |
TGTAATCTCAGGCCAATTAC+TGG | 0.365361 | 4.4:+7634237 | None:intergenic |
GACGTATCTCGCTAAATATA+GGG | 0.371384 | 4.4:+7634486 | None:intergenic |
GTTGGTAATAGACCAGTAAT+TGG | 0.382891 | 4.4:-7634249 | MS.gene49736:CDS |
CAGTATCCTGGAGTGTCTTC+GGG | 0.387249 | 4.4:+7633715 | None:intergenic |
TTGTTGAATATCCGTGGAAA+TGG | 0.394567 | 4.4:-7634957 | MS.gene49736:CDS |
ATTAAGTCTCTTGCTTATGA+TGG | 0.395072 | 4.4:-7635778 | MS.gene49736:CDS |
ATCATGGGACCCTGAGGCCT+TGG | 0.403203 | 4.4:-7635674 | MS.gene49736:CDS |
TCTAACCTTGCCAAGGCCTC+AGG | 0.403832 | 4.4:+7635664 | None:intergenic |
AATTGGCCTGAGATTACAAT+TGG | 0.406239 | 4.4:-7634232 | MS.gene49736:CDS |
AACCATGAAATGCGTCTTGT+AGG | 0.407081 | 4.4:-7635871 | MS.gene49736:CDS |
TGGCTAAGATTTAGTATCTT+GGG | 0.407867 | 4.4:-7634431 | MS.gene49736:CDS |
CAAAGCTTTCTGCACATAAT+GGG | 0.418467 | 4.4:-7633678 | MS.gene49736:CDS |
AATTGATGGAGGTCCTCAAT+TGG | 0.418554 | 4.4:+7634539 | None:intergenic |
ATTGTATTTATGTAAAGCTT+AGG | 0.420450 | 4.4:+7634407 | None:intergenic |
CAACTGGGCTCCTGTGACAA+TGG | 0.423001 | 4.4:+7634017 | None:intergenic |
TCGGAACTCATGTGATAGTC+GGG | 0.426259 | 4.4:-7635411 | MS.gene49736:CDS |
AGATACGTCTTGGTTCTTAC+TGG | 0.428387 | 4.4:-7634472 | MS.gene49736:CDS |
CCAGGATACTGGGTTGTGTC+TGG | 0.429175 | 4.4:-7633703 | MS.gene49736:CDS |
GCTGCTGAAACCGCCAAGAT+TGG | 0.440338 | 4.4:+7633903 | None:intergenic |
TCCCTTCCAATTGTAATCTC+AGG | 0.441693 | 4.4:+7634226 | None:intergenic |
AACAGCTAGCACGAAGTTCA+TGG | 0.443770 | 4.4:-7635296 | MS.gene49736:CDS |
AGTCTCTTGCTTATGATGGT+TGG | 0.445593 | 4.4:-7635774 | MS.gene49736:CDS |
CTTGTAGGAGACACTGCATC+TGG | 0.453976 | 4.4:-7635856 | MS.gene49736:CDS |
AATGTATCATAGTGAATGGT+TGG | 0.460632 | 4.4:-7635039 | MS.gene49736:CDS |
CCCACTCGGGTGGTTTCTGA+AGG | 0.465186 | 4.4:+7633935 | None:intergenic |
GAACCGATGGTCACATCGCC+TGG | 0.470037 | 4.4:+7633823 | None:intergenic |
ACAAGGTTCATAGAACGTTT+CGG | 0.473580 | 4.4:-7635430 | MS.gene49736:intron |
CAGCTTCTTTGACATGATCA+TGG | 0.476704 | 4.4:+7635704 | None:intergenic |
TTGTACCGCACCAGTTGAAT+CGG | 0.479326 | 4.4:-7634052 | MS.gene49736:CDS |
CGGTTTCAGCAGCAAGTCCA+CGG | 0.479542 | 4.4:-7633893 | MS.gene49736:CDS |
TGGGATCAATCCTCCAATCT+TGG | 0.481908 | 4.4:-7633916 | MS.gene49736:CDS |
TGCGTTGTCTGCAAGTGGTA+AGG | 0.485168 | 4.4:+7634149 | None:intergenic |
ACTTCCATAAGAAAGTGAAA+TGG | 0.489566 | 4.4:-7634092 | MS.gene49736:CDS |
AGATGCATCGATATGACATC+AGG | 0.491452 | 4.4:+7634999 | None:intergenic |
CTTAGCCTTTATTCCGAAAG+AGG | 0.493443 | 4.4:-7633866 | MS.gene49736:CDS |
GGTTTCAGCAGCAAGTCCAC+GGG | 0.495177 | 4.4:-7633892 | MS.gene49736:CDS |
TGTGATAGTCGGGGTGAGCA+TGG | 0.496550 | 4.4:-7635401 | MS.gene49736:CDS |
TCTGCAAGTGGTAAGGACTT+TGG | 0.499740 | 4.4:+7634156 | None:intergenic |
AAGGGTGGCACCAATAACTT+TGG | 0.502575 | 4.4:+7633954 | None:intergenic |
TCGATATGACATCAGGTTGT+GGG | 0.503036 | 4.4:+7635006 | None:intergenic |
AAACAATGTATCATAGTGAA+TGG | 0.504555 | 4.4:-7635043 | MS.gene49736:CDS |
CCAGACACAACCCAGTATCC+TGG | 0.505046 | 4.4:+7633703 | None:intergenic |
GCTGAAACCGCCAAGATTGG+AGG | 0.507368 | 4.4:+7633906 | None:intergenic |
ATATTTAGCGAGATACGTCT+TGG | 0.512794 | 4.4:-7634482 | MS.gene49736:CDS |
CGAAGACACTCCAGGATACT+GGG | 0.516395 | 4.4:-7633713 | MS.gene49736:CDS |
GACAGTCTTTCCATTGTCAC+AGG | 0.517079 | 4.4:-7634027 | MS.gene49736:CDS |
ATCGATATGACATCAGGTTG+TGG | 0.517095 | 4.4:+7635005 | None:intergenic |
AGAGGGCCCGAAGACACTCC+AGG | 0.518785 | 4.4:-7633721 | MS.gene49736:CDS |
AAGAAGCTGTGCCATCATCA+TGG | 0.519325 | 4.4:-7635690 | MS.gene49736:CDS |
CGGGGTGAGCATGGGAGGGA+AGG | 0.522195 | 4.4:-7635392 | MS.gene49736:CDS |
GCCTCAGGGTCCCATGATGA+TGG | 0.524754 | 4.4:+7635679 | None:intergenic |
CTAGGTGTACGCACTGGTGC+AGG | 0.525023 | 4.4:+7633778 | None:intergenic |
AGTCAGATGCTGAAGGTGAA+TGG | 0.525240 | 4.4:+7634185 | None:intergenic |
ATAGTCGGGGTGAGCATGGG+AGG | 0.528201 | 4.4:-7635397 | MS.gene49736:CDS |
TTATTCCGAAAGAGGGAAAG+AGG | 0.533936 | 4.4:-7633858 | MS.gene49736:CDS |
GTTTCAGCTACCGAGACAAT+GGG | 0.535357 | 4.4:-7634510 | MS.gene49736:CDS |
GGCCTGAGATTACAATTGGA+AGG | 0.538497 | 4.4:-7634228 | MS.gene49736:CDS |
TTCGGAACTCATGTGATAGT+CGG | 0.541320 | 4.4:-7635412 | MS.gene49736:CDS |
CAAGATACTAAATCTTAGCC+AGG | 0.545013 | 4.4:+7634433 | None:intergenic |
GTGATAGTCGGGGTGAGCAT+GGG | 0.545065 | 4.4:-7635400 | MS.gene49736:CDS |
GATCAATCCTCCAATCTTGG+CGG | 0.547130 | 4.4:-7633913 | MS.gene49736:CDS |
AGTTTCAGCTACCGAGACAA+TGG | 0.553319 | 4.4:-7634511 | MS.gene49736:CDS |
TTAGCCTTTATTCCGAAAGA+GGG | 0.554550 | 4.4:-7633865 | MS.gene49736:CDS |
GGAAGCATCAAATGAATACC+TGG | 0.555372 | 4.4:-7634451 | MS.gene49736:CDS |
TTCTGATGAAAGGTAGATGT+TGG | 0.558473 | 4.4:-7634267 | MS.gene49736:intron |
ACCTAGGCTTCAAAAGTATG+TGG | 0.559009 | 4.4:-7633761 | MS.gene49736:CDS |
GCATTTGCGTTGTCTGCAAG+TGG | 0.559908 | 4.4:+7634144 | None:intergenic |
AGACTGTCATCCGATTCAAC+TGG | 0.561552 | 4.4:+7634042 | None:intergenic |
TCAAAAGTATGTGGACATAA+CGG | 0.561886 | 4.4:-7633752 | MS.gene49736:CDS |
GCCTGAGATTACAATTGGAA+GGG | 0.566489 | 4.4:-7634227 | MS.gene49736:CDS |
AGAAGCTGTGCCATCATCAT+GGG | 0.568471 | 4.4:-7635689 | MS.gene49736:CDS |
TGGAAGGGAGAAGAAGCAAC+CGG | 0.568916 | 4.4:-7634212 | MS.gene49736:CDS |
ATGGTACATAAAAGGAAGGG+TGG | 0.569803 | 4.4:-7635074 | MS.gene49736:CDS |
GCTGAAGGTGAATGGCCAAC+CGG | 0.573510 | 4.4:+7634193 | None:intergenic |
TGATGGAGGTCCTCAATTGG+AGG | 0.577604 | 4.4:+7634542 | None:intergenic |
CTAACCTTGCCAAGGCCTCA+GGG | 0.580190 | 4.4:+7635665 | None:intergenic |
AACAGACAAACCTCCAATTG+AGG | 0.583441 | 4.4:-7634552 | MS.gene49736:intron |
CTCGGGTGGTTTCTGAAGGG+TGG | 0.584252 | 4.4:+7633939 | None:intergenic |
AATATAGGGGCCCATTGTCT+CGG | 0.585064 | 4.4:+7634500 | None:intergenic |
TATTCCGAAAGAGGGAAAGA+GGG | 0.588418 | 4.4:-7633857 | MS.gene49736:CDS |
TTTATGGTACATAAAAGGAA+GGG | 0.590990 | 4.4:-7635077 | MS.gene49736:CDS |
CAAATCAATACTTACAGCGA+AGG | 0.591791 | 4.4:+7634907 | None:intergenic |
GAAGGTAGAGATTTATAGCA+TGG | 0.594301 | 4.4:+7634925 | None:intergenic |
GTTGAATTAGAAAACTATCA+TGG | 0.594595 | 4.4:-7635733 | MS.gene49736:CDS |
GGCTCATAAATCCATTTCCA+CGG | 0.594804 | 4.4:+7634946 | None:intergenic |
TCTAAGTTCTAACCTTGCCA+AGG | 0.597051 | 4.4:+7635657 | None:intergenic |
TGGTCGATGTATCAAAGACT+TGG | 0.598827 | 4.4:-7635806 | MS.gene49736:CDS |
GCCATCATCATGGGACCCTG+AGG | 0.604238 | 4.4:-7635680 | MS.gene49736:CDS |
ATTGGAGGATTGATCCCACT+CGG | 0.605159 | 4.4:+7633921 | None:intergenic |
CCTTCAGAAACCACCCGAGT+GGG | 0.608119 | 4.4:-7633935 | MS.gene49736:CDS |
AAGAGGGGTCATCCAAAACC+AGG | 0.612754 | 4.4:-7633841 | MS.gene49736:CDS |
ACGTATCTCGCTAAATATAG+GGG | 0.615421 | 4.4:+7634487 | None:intergenic |
TGAAGCCTAGGTGTACGCAC+TGG | 0.617438 | 4.4:+7633772 | None:intergenic |
TAGTCGGGGTGAGCATGGGA+GGG | 0.618685 | 4.4:-7635396 | MS.gene49736:CDS |
AGGGAGAAGAAGCAACCGGT+TGG | 0.618702 | 4.4:-7634208 | MS.gene49736:CDS |
AAACCAGGCGATGTGACCAT+CGG | 0.618841 | 4.4:-7633826 | MS.gene49736:CDS |
CCACTCGGGTGGTTTCTGAA+GGG | 0.624339 | 4.4:+7633936 | None:intergenic |
GAGGATTGATCCCACTCGGG+TGG | 0.625847 | 4.4:+7633925 | None:intergenic |
AGAATATGTAGTAGAACCGA+TGG | 0.629598 | 4.4:+7633810 | None:intergenic |
GTAAAGAAGTCAGATGCTGA+AGG | 0.633934 | 4.4:+7634178 | None:intergenic |
GTCATCCGATTCAACTGGTG+CGG | 0.637991 | 4.4:+7634047 | None:intergenic |
CCCTTCAGAAACCACCCGAG+TGG | 0.639822 | 4.4:-7633936 | MS.gene49736:CDS |
GACATAACGGAAATGATGAG+AGG | 0.645131 | 4.4:-7633739 | MS.gene49736:CDS |
GTTTCAGCAGCAAGTCCACG+GGG | 0.645716 | 4.4:-7633891 | MS.gene49736:CDS |
TCAATAGTGAATACTTAACA+AGG | 0.648499 | 4.4:+7633644 | None:intergenic |
GGGACCCTGAGGCCTTGGCA+AGG | 0.651590 | 4.4:-7635669 | MS.gene49736:intron |
CTGCACCAGTGCGTACACCT+AGG | 0.659104 | 4.4:-7633777 | MS.gene49736:CDS |
ACATAACGGAAATGATGAGA+GGG | 0.659425 | 4.4:-7633738 | MS.gene49736:CDS |
CGGAACTCATGTGATAGTCG+GGG | 0.661883 | 4.4:-7635410 | MS.gene49736:CDS |
TTGGAGGATTGATCCCACTC+GGG | 0.664867 | 4.4:+7633922 | None:intergenic |
TTCAACAAAAGTGATGTCAG+AGG | 0.667680 | 4.4:+7634972 | None:intergenic |
ATTCCGAAAGAGGGAAAGAG+GGG | 0.674087 | 4.4:-7633856 | MS.gene49736:CDS |
TTTCAGCAGCAAGTCCACGG+GGG | 0.749568 | 4.4:-7633890 | MS.gene49736:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTAAAAAAAATATTTCAT+TGG | - | chr4.4:7634381-7634400 | MS.gene49736:intron | 10.0% |
!! | TTAAAAAAAATATTTCATTG+GGG | - | chr4.4:7634383-7634402 | MS.gene49736:intron | 10.0% |
!!! | CAATGAAATATTTTTTTTAA+TGG | + | chr4.4:7634383-7634402 | None:intergenic | 10.0% |
!! | AATTTCATTTCAAAATAAGA+TGG | + | chr4.4:7634331-7634350 | None:intergenic | 15.0% |
!! | TATATCACTTTCTTAAAATT+AGG | + | chr4.4:7634669-7634688 | None:intergenic | 15.0% |
!! | ATTGTATTTATGTAAAGCTT+AGG | + | chr4.4:7635091-7635110 | None:intergenic | 20.0% |
!! | TCTGTTATAAACATTATACA+AGG | - | chr4.4:7634808-7634827 | MS.gene49736:intron | 20.0% |
!! | TTTCAAAATAAGATGGTTAA+AGG | + | chr4.4:7634324-7634343 | None:intergenic | 20.0% |
!!! | AATTTATACTGATTCATACA+AGG | - | chr4.4:7634048-7634067 | MS.gene49736:CDS | 20.0% |
!!! | ATCTTTTTATGGTACATAAA+AGG | - | chr4.4:7634413-7634432 | MS.gene49736:CDS | 20.0% |
! | AAACAATGTATCATAGTGAA+TGG | - | chr4.4:7634452-7634471 | MS.gene49736:CDS | 25.0% |
! | AACATTATACAAGGATAGAT+CGG | - | chr4.4:7634817-7634836 | MS.gene49736:intron | 25.0% |
! | ACCATTAACTATCATTCAAA+GGG | - | chr4.4:7634724-7634743 | MS.gene49736:intron | 25.0% |
! | AGACTTAAGTAACAAAAAAG+AGG | - | chr4.4:7634253-7634272 | MS.gene49736:CDS | 25.0% |
! | ATCTGAATATTCCAAAGATT+TGG | - | chr4.4:7633923-7633942 | MS.gene49736:CDS | 25.0% |
! | GGAATATTCAGATAGAAATT+TGG | + | chr4.4:7633916-7633935 | None:intergenic | 25.0% |
! | GTTGAATTAGAAAACTATCA+TGG | - | chr4.4:7633762-7633781 | MS.gene49736:CDS | 25.0% |
! | TACCATTAACTATCATTCAA+AGG | - | chr4.4:7634723-7634742 | MS.gene49736:intron | 25.0% |
! | TCAATAGTGAATACTTAACA+AGG | + | chr4.4:7635854-7635873 | None:intergenic | 25.0% |
! | TTTATGGTACATAAAAGGAA+GGG | - | chr4.4:7634418-7634437 | MS.gene49736:CDS | 25.0% |
!! | AACACACCACATTTTTATTA+TGG | - | chr4.4:7634277-7634296 | MS.gene49736:intron | 25.0% |
!! | TAGTATCCAAAAACTTTTGA+AGG | - | chr4.4:7634175-7634194 | MS.gene49736:CDS | 25.0% |
!! | TTTTATGGTACATAAAAGGA+AGG | - | chr4.4:7634417-7634436 | MS.gene49736:CDS | 25.0% |
!!! | AAAAGTTTTTGGATACTAGT+TGG | + | chr4.4:7634173-7634192 | None:intergenic | 25.0% |
!!! | AATTTCTAGTTATAGAGCAA+TGG | + | chr4.4:7633953-7633972 | None:intergenic | 25.0% |
!!! | TTCAATTCTGAGATGTTTAA+TGG | + | chr4.4:7634856-7634875 | None:intergenic | 25.0% |
!!! | TTTTTTCATCTTCTGATGAA+AGG | - | chr4.4:7635218-7635237 | MS.gene49736:intron | 25.0% |
AACTACGAATCTCTGAATAT+TGG | - | chr4.4:7635188-7635207 | MS.gene49736:intron | 30.0% | |
AATAACACTATGCAGTTCAA+GGG | + | chr4.4:7633865-7633884 | None:intergenic | 30.0% | |
AATGTATCATAGTGAATGGT+TGG | - | chr4.4:7634456-7634475 | MS.gene49736:CDS | 30.0% | |
ACATTATACAAGGATAGATC+GGG | - | chr4.4:7634818-7634837 | MS.gene49736:intron | 30.0% | |
ACTTCCATAAGAAAGTGAAA+TGG | - | chr4.4:7635403-7635422 | MS.gene49736:CDS | 30.0% | |
ATGCACATTAAAAATGCAAG+AGG | + | chr4.4:7635128-7635147 | None:intergenic | 30.0% | |
ATTAAGTCTCTTGCTTATGA+TGG | - | chr4.4:7633717-7633736 | MS.gene49736:CDS | 30.0% | |
GCAGATTATGTCAAGAAAAA+TGG | - | chr4.4:7634698-7634717 | MS.gene49736:intron | 30.0% | |
GGAATGCCATAATAAAAATG+TGG | + | chr4.4:7634286-7634305 | None:intergenic | 30.0% | |
TAAAGGTAGTATAGTGCTAA+AGG | + | chr4.4:7634307-7634326 | None:intergenic | 30.0% | |
TAATAACACTATGCAGTTCA+AGG | + | chr4.4:7633866-7633885 | None:intergenic | 30.0% | |
TCCCTTTGAATGATAGTTAA+TGG | + | chr4.4:7634728-7634747 | None:intergenic | 30.0% | |
TGAGATGTTTAATGGAATAC+TGG | + | chr4.4:7634848-7634867 | None:intergenic | 30.0% | |
TGCACATTAAAAATGCAAGA+GGG | + | chr4.4:7635127-7635146 | None:intergenic | 30.0% | |
TGGCTAAGATTTAGTATCTT+GGG | - | chr4.4:7635064-7635083 | MS.gene49736:CDS | 30.0% | |
! | CTGTTTCCTTCAAAAGTTTT+TGG | + | chr4.4:7634184-7634203 | None:intergenic | 30.0% |
! | TCAAAAGTATGTGGACATAA+CGG | - | chr4.4:7635743-7635762 | MS.gene49736:CDS | 30.0% |
!!! | AAAAGAAGTGTCTCCTTTTA+CGG | - | chr4.4:7635508-7635527 | MS.gene49736:intron | 30.0% |
ACAAGGTTCATAGAACGTTT+CGG | - | chr4.4:7634065-7634084 | MS.gene49736:CDS | 35.0% | |
ACGTATCTCGCTAAATATAG+GGG | + | chr4.4:7635011-7635030 | None:intergenic | 35.0% | |
AGAATATGTAGTAGAACCGA+TGG | + | chr4.4:7635688-7635707 | None:intergenic | 35.0% | |
AGACGTATCTCGCTAAATAT+AGG | + | chr4.4:7635013-7635032 | None:intergenic | 35.0% | |
AGCTCCATTTCACTTTCTTA+TGG | + | chr4.4:7635410-7635429 | None:intergenic | 35.0% | |
ATATTTAGCGAGATACGTCT+TGG | - | chr4.4:7635013-7635032 | MS.gene49736:CDS | 35.0% | |
CAAAGCTTTCTGCACATAAT+GGG | - | chr4.4:7635817-7635836 | MS.gene49736:CDS | 35.0% | |
CAAATCAATACTTACAGCGA+AGG | + | chr4.4:7634591-7634610 | None:intergenic | 35.0% | |
CAAGATACTAAATCTTAGCC+AGG | + | chr4.4:7635065-7635084 | None:intergenic | 35.0% | |
CACAGTTCAATTTGCATCAT+AGG | + | chr4.4:7633989-7634008 | None:intergenic | 35.0% | |
CTGGCTAAGATTTAGTATCT+TGG | - | chr4.4:7635063-7635082 | MS.gene49736:CDS | 35.0% | |
GAAACTCGAAAAATTGATGG+AGG | + | chr4.4:7634970-7634989 | None:intergenic | 35.0% | |
GAAGGTAGAGATTTATAGCA+TGG | + | chr4.4:7634573-7634592 | None:intergenic | 35.0% | |
GACGTATCTCGCTAAATATA+GGG | + | chr4.4:7635012-7635031 | None:intergenic | 35.0% | |
GCACATTAAAAATGCAAGAG+GGG | + | chr4.4:7635126-7635145 | None:intergenic | 35.0% | |
GCTGAAACTCGAAAAATTGA+TGG | + | chr4.4:7634973-7634992 | None:intergenic | 35.0% | |
GTCATTTCTGTGCTTCATTT+GGG | - | chr4.4:7633661-7633680 | MS.gene49736:CDS | 35.0% | |
TGATGCAAATTGAACTGTGA+TGG | - | chr4.4:7633990-7634009 | MS.gene49736:CDS | 35.0% | |
TTCAACAAAAGTGATGTCAG+AGG | + | chr4.4:7634526-7634545 | None:intergenic | 35.0% | |
TTCTGATGAAAGGTAGATGT+TGG | - | chr4.4:7635228-7635247 | MS.gene49736:intron | 35.0% | |
TTGTCTGTTTCAGTTATCAC+AGG | + | chr4.4:7634932-7634951 | None:intergenic | 35.0% | |
TTGTTGAATATCCGTGGAAA+TGG | - | chr4.4:7634538-7634557 | MS.gene49736:CDS | 35.0% | |
! | AATTGGCCTGAGATTACAAT+TGG | - | chr4.4:7635263-7635282 | MS.gene49736:CDS | 35.0% |
! | ACATAACGGAAATGATGAGA+GGG | - | chr4.4:7635757-7635776 | MS.gene49736:CDS | 35.0% |
! | ACTTCTTTTCAACTTGCAAC+TGG | + | chr4.4:7635497-7635516 | None:intergenic | 35.0% |
! | CTGCATAGTGTTATTATGTG+TGG | - | chr4.4:7633870-7633889 | MS.gene49736:CDS | 35.0% |
! | CTTCTTTTCAACTTGCAACT+GGG | + | chr4.4:7635496-7635515 | None:intergenic | 35.0% |
! | TACTAGCACGTTGATAGAAT+GGG | + | chr4.4:7635168-7635187 | None:intergenic | 35.0% |
! | TTAATGTGCATTTTGCGAGT+TGG | - | chr4.4:7635137-7635156 | MS.gene49736:intron | 35.0% |
! | TTACTAGCACGTTGATAGAA+TGG | + | chr4.4:7635169-7635188 | None:intergenic | 35.0% |
! | TTAGCCTTTATTCCGAAAGA+GGG | - | chr4.4:7635630-7635649 | MS.gene49736:intron | 35.0% |
!! | GTTGGTAATAGACCAGTAAT+TGG | - | chr4.4:7635246-7635265 | MS.gene49736:CDS | 35.0% |
!! | TCACTTTTGTTGAATATCCG+TGG | - | chr4.4:7634532-7634551 | MS.gene49736:CDS | 35.0% |
AACAGACAAACCTCCAATTG+AGG | - | chr4.4:7634943-7634962 | MS.gene49736:CDS | 40.0% | |
AACCATGAAATGCGTCTTGT+AGG | - | chr4.4:7633624-7633643 | MS.gene49736:CDS | 40.0% | |
AATTGATGGAGGTCCTCAAT+TGG | + | chr4.4:7634959-7634978 | None:intergenic | 40.0% | |
AGTCTCTTGCTTATGATGGT+TGG | - | chr4.4:7633721-7633740 | MS.gene49736:CDS | 40.0% | |
ATGGTACATAAAAGGAAGGG+TGG | - | chr4.4:7634421-7634440 | MS.gene49736:CDS | 40.0% | |
CAGCTTCTTTGACATGATCA+TGG | + | chr4.4:7633794-7633813 | None:intergenic | 40.0% | |
CTTTCCCTCTTTCGGAATAA+AGG | + | chr4.4:7635637-7635656 | None:intergenic | 40.0% | |
GCAAAGCTTTCTGCACATAA+TGG | - | chr4.4:7635816-7635835 | MS.gene49736:CDS | 40.0% | |
GCAATGGATGTCCAAATCTT+TGG | + | chr4.4:7633937-7633956 | None:intergenic | 40.0% | |
GCCTGAGATTACAATTGGAA+GGG | - | chr4.4:7635268-7635287 | MS.gene49736:CDS | 40.0% | |
GGCTCATAAATCCATTTCCA+CGG | + | chr4.4:7634552-7634571 | None:intergenic | 40.0% | |
GGTCATTTCTGTGCTTCATT+TGG | - | chr4.4:7633660-7633679 | MS.gene49736:CDS | 40.0% | |
GTAAAGAAGTCAGATGCTGA+AGG | + | chr4.4:7635320-7635339 | None:intergenic | 40.0% | |
TATTCCGAAAGAGGGAAAGA+GGG | - | chr4.4:7635638-7635657 | MS.gene49736:intron | 40.0% | |
TCCCTTCCAATTGTAATCTC+AGG | + | chr4.4:7635272-7635291 | None:intergenic | 40.0% | |
TGGTCGATGTATCAAAGACT+TGG | - | chr4.4:7633689-7633708 | MS.gene49736:CDS | 40.0% | |
TGTAATCTCAGGCCAATTAC+TGG | + | chr4.4:7635261-7635280 | None:intergenic | 40.0% | |
TTATTCCGAAAGAGGGAAAG+AGG | - | chr4.4:7635637-7635656 | MS.gene49736:intron | 40.0% | |
TTCGGAACTCATGTGATAGT+CGG | - | chr4.4:7634083-7634102 | MS.gene49736:CDS | 40.0% | |
! | ACCTAGGCTTCAAAAGTATG+TGG | - | chr4.4:7635734-7635753 | MS.gene49736:CDS | 40.0% |
! | AGATACGTCTTGGTTCTTAC+TGG | - | chr4.4:7635023-7635042 | MS.gene49736:CDS | 40.0% |
! | AGATGCATCGATATGACATC+AGG | + | chr4.4:7634499-7634518 | None:intergenic | 40.0% |
! | ATCGATATGACATCAGGTTG+TGG | + | chr4.4:7634493-7634512 | None:intergenic | 40.0% |
! | CTTAGCCTTTATTCCGAAAG+AGG | - | chr4.4:7635629-7635648 | MS.gene49736:intron | 40.0% |
! | GACATAACGGAAATGATGAG+AGG | - | chr4.4:7635756-7635775 | MS.gene49736:CDS | 40.0% |
! | GGGGTTGCAGAATCTTTTTA+TGG | - | chr4.4:7634402-7634421 | MS.gene49736:intron | 40.0% |
! | TCGATATGACATCAGGTTGT+GGG | + | chr4.4:7634492-7634511 | None:intergenic | 40.0% |
! | TCTAAGTTCTAACCTTGCCA+AGG | + | chr4.4:7633841-7633860 | None:intergenic | 40.0% |
! | TGTGCTTCATTTGGGTTATC+TGG | - | chr4.4:7633669-7633688 | MS.gene49736:CDS | 40.0% |
!! | GGAAGCATCAAATGAATACC+TGG | - | chr4.4:7635044-7635063 | MS.gene49736:CDS | 40.0% |
!!! | TCCACATACTTTTGAAGCCT+AGG | + | chr4.4:7635738-7635757 | None:intergenic | 40.0% |
AACAGCTAGCACGAAGTTCA+TGG | - | chr4.4:7634199-7634218 | MS.gene49736:CDS | 45.0% | |
AAGAAGCTGTGCCATCATCA+TGG | - | chr4.4:7633805-7633824 | MS.gene49736:CDS | 45.0% | |
AAGGGTGGCACCAATAACTT+TGG | + | chr4.4:7635544-7635563 | None:intergenic | 45.0% | |
AATATAGGGGCCCATTGTCT+CGG | + | chr4.4:7634998-7635017 | None:intergenic | 45.0% | |
AGAAGCTGTGCCATCATCAT+GGG | - | chr4.4:7633806-7633825 | MS.gene49736:CDS | 45.0% | |
AGACTGTCATCCGATTCAAC+TGG | + | chr4.4:7635456-7635475 | None:intergenic | 45.0% | |
AGTCAGATGCTGAAGGTGAA+TGG | + | chr4.4:7635313-7635332 | None:intergenic | 45.0% | |
AGTTTCAGCTACCGAGACAA+TGG | - | chr4.4:7634984-7635003 | MS.gene49736:CDS | 45.0% | |
ATTCCGAAAGAGGGAAAGAG+GGG | - | chr4.4:7635639-7635658 | MS.gene49736:intron | 45.0% | |
ATTGGAGGATTGATCCCACT+CGG | + | chr4.4:7635577-7635596 | None:intergenic | 45.0% | |
CTCCTACAAGACGCATTTCA+TGG | + | chr4.4:7633629-7633648 | None:intergenic | 45.0% | |
CTGCGCTTCTCCAAAGTTAT+TGG | - | chr4.4:7635531-7635550 | MS.gene49736:intron | 45.0% | |
GACAGTCTTTCCATTGTCAC+AGG | - | chr4.4:7635468-7635487 | MS.gene49736:intron | 45.0% | |
GATCAATCCTCCAATCTTGG+CGG | - | chr4.4:7635582-7635601 | MS.gene49736:intron | 45.0% | |
GGCCTGAGATTACAATTGGA+AGG | - | chr4.4:7635267-7635286 | MS.gene49736:CDS | 45.0% | |
GTTTCAGCTACCGAGACAAT+GGG | - | chr4.4:7634985-7635004 | MS.gene49736:CDS | 45.0% | |
TCGGAACTCATGTGATAGTC+GGG | - | chr4.4:7634084-7634103 | MS.gene49736:CDS | 45.0% | |
TCTGCAAGTGGTAAGGACTT+TGG | + | chr4.4:7635342-7635361 | None:intergenic | 45.0% | |
TGGGATCAATCCTCCAATCT+TGG | - | chr4.4:7635579-7635598 | MS.gene49736:intron | 45.0% | |
TTGTACCGCACCAGTTGAAT+CGG | - | chr4.4:7635443-7635462 | MS.gene49736:intron | 45.0% | |
!! | ATTAAAAAAAATATTTCATT+GGG | - | chr4.4:7634382-7634401 | MS.gene49736:intron | 5.0% |
AAACCAGGCGATGTGACCAT+CGG | - | chr4.4:7635669-7635688 | MS.gene49736:intron | 50.0% | |
AAGAGGGGTCATCCAAAACC+AGG | - | chr4.4:7635654-7635673 | MS.gene49736:intron | 50.0% | |
AATAAAGGCTAAGACCCCCG+TGG | + | chr4.4:7635622-7635641 | None:intergenic | 50.0% | |
ATGCAAGAGGGGAGACTTAC+TGG | + | chr4.4:7635115-7635134 | None:intergenic | 50.0% | |
CGAAGACACTCCAGGATACT+GGG | - | chr4.4:7635782-7635801 | MS.gene49736:CDS | 50.0% | |
CGGAACTCATGTGATAGTCG+GGG | - | chr4.4:7634085-7634104 | MS.gene49736:CDS | 50.0% | |
CTTGTAGGAGACACTGCATC+TGG | - | chr4.4:7633639-7633658 | MS.gene49736:CDS | 50.0% | |
GCATTTGCGTTGTCTGCAAG+TGG | + | chr4.4:7635354-7635373 | None:intergenic | 50.0% | |
GTCATCCGATTCAACTGGTG+CGG | + | chr4.4:7635451-7635470 | None:intergenic | 50.0% | |
TGACCCCTCTTTCCCTCTTT+CGG | + | chr4.4:7635645-7635664 | None:intergenic | 50.0% | |
TGATGGAGGTCCTCAATTGG+AGG | + | chr4.4:7634956-7634975 | None:intergenic | 50.0% | |
TGCGTTGTCTGCAAGTGGTA+AGG | + | chr4.4:7635349-7635368 | None:intergenic | 50.0% | |
TGGAAGGGAGAAGAAGCAAC+CGG | - | chr4.4:7635283-7635302 | MS.gene49736:CDS | 50.0% | |
TTGGAGGATTGATCCCACTC+GGG | + | chr4.4:7635576-7635595 | None:intergenic | 50.0% | |
! | ATGGTCACATCGCCTGGTTT+TGG | + | chr4.4:7635669-7635688 | None:intergenic | 50.0% |
! | CAGTATCCTGGAGTGTCTTC+GGG | + | chr4.4:7635783-7635802 | None:intergenic | 50.0% |
! | CCAGTATCCTGGAGTGTCTT+CGG | + | chr4.4:7635784-7635803 | None:intergenic | 50.0% |
AGGGAGAAGAAGCAACCGGT+TGG | - | chr4.4:7635287-7635306 | MS.gene49736:CDS | 55.0% | |
CAACTGGGCTCCTGTGACAA+TGG | + | chr4.4:7635481-7635500 | None:intergenic | 55.0% | |
CCACTCGGGTGGTTTCTGAA+GGG | + | chr4.4:7635562-7635581 | None:intergenic | 55.0% | |
CCAGACACAACCCAGTATCC+TGG | + | chr4.4:7635795-7635814 | None:intergenic | 55.0% | |
CCAGGATACTGGGTTGTGTC+TGG | - | chr4.4:7635792-7635811 | MS.gene49736:CDS | 55.0% | |
CCGAAGACACTCCAGGATAC+TGG | - | chr4.4:7635781-7635800 | MS.gene49736:CDS | 55.0% | |
CCTTCAGAAACCACCCGAGT+GGG | - | chr4.4:7635560-7635579 | MS.gene49736:intron | 55.0% | |
CGGTTTCAGCAGCAAGTCCA+CGG | - | chr4.4:7635602-7635621 | MS.gene49736:intron | 55.0% | |
CTAACCTTGCCAAGGCCTCA+GGG | + | chr4.4:7633833-7633852 | None:intergenic | 55.0% | |
GCTGAAACCGCCAAGATTGG+AGG | + | chr4.4:7635592-7635611 | None:intergenic | 55.0% | |
GCTGAAGGTGAATGGCCAAC+CGG | + | chr4.4:7635305-7635324 | None:intergenic | 55.0% | |
GCTGCTGAAACCGCCAAGAT+TGG | + | chr4.4:7635595-7635614 | None:intergenic | 55.0% | |
GGTTTCAGCAGCAAGTCCAC+GGG | - | chr4.4:7635603-7635622 | MS.gene49736:intron | 55.0% | |
GTGATAGTCGGGGTGAGCAT+GGG | - | chr4.4:7634095-7634114 | MS.gene49736:CDS | 55.0% | |
GTTTCAGCAGCAAGTCCACG+GGG | - | chr4.4:7635604-7635623 | MS.gene49736:intron | 55.0% | |
TCTAACCTTGCCAAGGCCTC+AGG | + | chr4.4:7633834-7633853 | None:intergenic | 55.0% | |
TGAAGCCTAGGTGTACGCAC+TGG | + | chr4.4:7635726-7635745 | None:intergenic | 55.0% | |
TGTGATAGTCGGGGTGAGCA+TGG | - | chr4.4:7634094-7634113 | MS.gene49736:CDS | 55.0% | |
TTTCAGCAGCAAGTCCACGG+GGG | - | chr4.4:7635605-7635624 | MS.gene49736:intron | 55.0% | |
! | TGGAGAAGCGCAGCCGTAAA+AGG | + | chr4.4:7635524-7635543 | None:intergenic | 55.0% |
ATAGTCGGGGTGAGCATGGG+AGG | - | chr4.4:7634098-7634117 | MS.gene49736:CDS | 60.0% | |
ATCATGGGACCCTGAGGCCT+TGG | - | chr4.4:7633821-7633840 | MS.gene49736:CDS | 60.0% | |
CCCACTCGGGTGGTTTCTGA+AGG | + | chr4.4:7635563-7635582 | None:intergenic | 60.0% | |
CCCTTCAGAAACCACCCGAG+TGG | - | chr4.4:7635559-7635578 | MS.gene49736:intron | 60.0% | |
CTGCACCAGTGCGTACACCT+AGG | - | chr4.4:7635718-7635737 | MS.gene49736:CDS | 60.0% | |
GAACCGATGGTCACATCGCC+TGG | + | chr4.4:7635675-7635694 | None:intergenic | 60.0% | |
GAGGATTGATCCCACTCGGG+TGG | + | chr4.4:7635573-7635592 | None:intergenic | 60.0% | |
GCCATCATCATGGGACCCTG+AGG | - | chr4.4:7633815-7633834 | MS.gene49736:CDS | 60.0% | |
GCCTCAGGGTCCCATGATGA+TGG | + | chr4.4:7633819-7633838 | None:intergenic | 60.0% | |
TAGTCGGGGTGAGCATGGGA+GGG | - | chr4.4:7634099-7634118 | MS.gene49736:CDS | 60.0% | |
! | CTAGGTGTACGCACTGGTGC+AGG | + | chr4.4:7635720-7635739 | None:intergenic | 60.0% |
! | CTCGGGTGGTTTCTGAAGGG+TGG | + | chr4.4:7635559-7635578 | None:intergenic | 60.0% |
AGAGGGCCCGAAGACACTCC+AGG | - | chr4.4:7635774-7635793 | MS.gene49736:CDS | 65.0% | |
CGGGGTGAGCATGGGAGGGA+AGG | - | chr4.4:7634103-7634122 | MS.gene49736:CDS | 70.0% | |
GGGACCCTGAGGCCTTGGCA+AGG | - | chr4.4:7633826-7633845 | MS.gene49736:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 7633609 | 7635908 | 7633609 | ID=MS.gene49736 |
chr4.4 | mRNA | 7633609 | 7635908 | 7633609 | ID=MS.gene49736.t1;Parent=MS.gene49736 |
chr4.4 | exon | 7635670 | 7635908 | 7635670 | ID=MS.gene49736.t1.exon1;Parent=MS.gene49736.t1 |
chr4.4 | CDS | 7635670 | 7635908 | 7635670 | ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1 |
chr4.4 | exon | 7635243 | 7635447 | 7635243 | ID=MS.gene49736.t1.exon2;Parent=MS.gene49736.t1 |
chr4.4 | CDS | 7635243 | 7635447 | 7635243 | ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1 |
chr4.4 | exon | 7634922 | 7635105 | 7634922 | ID=MS.gene49736.t1.exon3;Parent=MS.gene49736.t1 |
chr4.4 | CDS | 7634922 | 7635105 | 7634922 | ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1 |
chr4.4 | exon | 7634403 | 7634569 | 7634403 | ID=MS.gene49736.t1.exon4;Parent=MS.gene49736.t1 |
chr4.4 | CDS | 7634403 | 7634569 | 7634403 | ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1 |
chr4.4 | exon | 7633609 | 7634277 | 7633609 | ID=MS.gene49736.t1.exon5;Parent=MS.gene49736.t1 |
chr4.4 | CDS | 7633609 | 7634277 | 7633609 | ID=cds.MS.gene49736.t1;Parent=MS.gene49736.t1 |
Gene Sequence |
Protein sequence |