Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049409.t1 | XP_013461494.1 | 92.9 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 4.60E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049409.t1 | Q9LY00 | 37.2 | 301 | 155 | 9 | 13 | 297 | 7 | 289 | 3.2e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049409.t1 | A0A072V0I2 | 92.9 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 3.3e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049409.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene050148 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene051494 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene058477 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene049409 | MS.gene05861 | 0.829156 | 6.03E-55 | -1.69E-46 |
| MS.gene049409 | MS.gene05862 | 0.832221 | 1.07E-55 | -1.69E-46 |
| MS.gene049409 | MS.gene05969 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene049409 | MS.gene059774 | 0.821482 | 3.94E-53 | -1.69E-46 |
| MS.gene049409 | MS.gene060697 | 0.819303 | 1.25E-52 | -1.69E-46 |
| MS.gene049409 | MS.gene061047 | 0.815323 | 9.81E-52 | -1.69E-46 |
| MS.gene049409 | MS.gene063690 | 0.848276 | 6.80E-60 | -1.69E-46 |
| MS.gene049409 | MS.gene06539 | 0.974036 | 1.87E-137 | -1.69E-46 |
| MS.gene049409 | MS.gene06784 | 0.963624 | 2.59E-122 | -1.69E-46 |
| MS.gene049409 | MS.gene20610 | 0.81708 | 3.97E-52 | -1.69E-46 |
| MS.gene049409 | MS.gene21214 | 0.805358 | 1.39E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene22694 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene27493 | 0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene049409 | MS.gene28156 | 0.834328 | 3.19E-56 | -1.69E-46 |
| MS.gene049409 | MS.gene33107 | 0.801791 | 7.62E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene33109 | 0.824345 | 8.49E-54 | -1.69E-46 |
| MS.gene049409 | MS.gene38123 | 0.833452 | 5.29E-56 | -1.69E-46 |
| MS.gene049409 | MS.gene40123 | 0.804249 | 2.36E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene49736 | 0.810977 | 8.81E-51 | -1.69E-46 |
| MS.gene049409 | MS.gene54110 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene54703 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene049409 | MS.gene56725 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene049409 | MS.gene58358 | 0.820081 | 8.28E-53 | -1.69E-46 |
| MS.gene049409 | MS.gene59122 | 0.802044 | 6.76E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene60808 | 0.800848 | 1.19E-48 | -1.69E-46 |
| MS.gene049409 | MS.gene70151 | 0.833377 | 5.52E-56 | -1.69E-46 |
| MS.gene049409 | MS.gene70712 | 0.806668 | 7.36E-50 | -1.69E-46 |
| MS.gene049409 | MS.gene71495 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene79758 | 0.838556 | 2.68E-57 | -1.69E-46 |
| MS.gene049409 | MS.gene83116 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene049409 | MS.gene86332 | 0.819996 | 8.66E-53 | -1.69E-46 |
| MS.gene049409 | MS.gene92756 | 0.802426 | 5.64E-49 | -1.69E-46 |
| MS.gene049409 | MS.gene95287 | 0.834973 | 2.20E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049409.t1 | MTR_3g093830 | 92.901 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 0.0 | 601 |
| MS.gene049409.t1 | MTR_5g067700 | 40.476 | 294 | 102 | 11 | 5 | 289 | 5 | 234 | 9.85e-53 | 173 |
| MS.gene049409.t1 | MTR_7g073380 | 39.000 | 200 | 93 | 5 | 17 | 210 | 15 | 191 | 5.58e-38 | 137 |
| MS.gene049409.t1 | MTR_7g073430 | 37.915 | 211 | 100 | 7 | 7 | 210 | 4 | 190 | 2.24e-35 | 130 |
| MS.gene049409.t1 | MTR_0002s1250 | 38.806 | 201 | 99 | 6 | 18 | 216 | 8 | 186 | 1.27e-34 | 127 |
| MS.gene049409.t1 | MTR_8g005750 | 38.571 | 210 | 97 | 6 | 18 | 226 | 6 | 184 | 3.66e-31 | 118 |
| MS.gene049409.t1 | MTR_3g090860 | 33.190 | 232 | 123 | 9 | 15 | 229 | 5 | 221 | 1.20e-24 | 102 |
| MS.gene049409.t1 | MTR_2g075680 | 32.819 | 259 | 132 | 10 | 14 | 256 | 13 | 245 | 1.35e-24 | 101 |
| MS.gene049409.t1 | MTR_2g075690 | 33.772 | 228 | 125 | 7 | 3 | 222 | 5 | 214 | 2.43e-24 | 100 |
| MS.gene049409.t1 | MTR_2g075700 | 34.783 | 230 | 115 | 8 | 9 | 222 | 7 | 217 | 4.48e-23 | 97.4 |
| MS.gene049409.t1 | MTR_8g032510 | 34.091 | 220 | 107 | 9 | 18 | 226 | 9 | 201 | 6.72e-23 | 96.7 |
| MS.gene049409.t1 | MTR_7g117200 | 30.097 | 206 | 126 | 4 | 7 | 212 | 2 | 189 | 3.13e-21 | 92.8 |
| MS.gene049409.t1 | MTR_8g027860 | 56.716 | 67 | 29 | 0 | 134 | 200 | 129 | 195 | 1.71e-20 | 90.9 |
| MS.gene049409.t1 | MTR_8g099350 | 33.679 | 193 | 106 | 6 | 17 | 200 | 12 | 191 | 6.82e-20 | 89.4 |
| MS.gene049409.t1 | MTR_2g075750 | 42.529 | 87 | 49 | 1 | 140 | 226 | 27 | 112 | 3.46e-19 | 84.0 |
| MS.gene049409.t1 | MTR_2g075610 | 50.794 | 63 | 31 | 0 | 142 | 204 | 30 | 92 | 1.49e-18 | 82.4 |
| MS.gene049409.t1 | MTR_5g067680 | 35.938 | 128 | 75 | 1 | 87 | 207 | 141 | 268 | 3.33e-18 | 84.7 |
| MS.gene049409.t1 | MTR_5g073620 | 39.706 | 68 | 41 | 0 | 142 | 209 | 673 | 740 | 1.14e-12 | 69.3 |
| MS.gene049409.t1 | MTR_7g028415 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene049409.t1 | MTR_7g028710 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene049409.t1 | MTR_4g127040 | 40.000 | 90 | 44 | 2 | 125 | 206 | 221 | 308 | 6.41e-12 | 65.9 |
| MS.gene049409.t1 | MTR_7g079010 | 34.579 | 107 | 58 | 3 | 102 | 206 | 109 | 205 | 7.40e-12 | 64.3 |
| MS.gene049409.t1 | MTR_8g098945 | 46.154 | 65 | 33 | 1 | 134 | 198 | 122 | 184 | 7.94e-12 | 65.1 |
| MS.gene049409.t1 | MTR_8g028565 | 41.026 | 78 | 41 | 2 | 125 | 199 | 136 | 211 | 1.24e-11 | 65.1 |
| MS.gene049409.t1 | MTR_1g009613 | 38.462 | 91 | 44 | 3 | 125 | 205 | 238 | 326 | 1.48e-11 | 64.7 |
| MS.gene049409.t1 | MTR_5g043880 | 38.372 | 86 | 49 | 2 | 142 | 227 | 125 | 206 | 2.00e-11 | 63.9 |
| MS.gene049409.t1 | MTR_8g096730 | 32.110 | 109 | 64 | 3 | 90 | 198 | 26 | 124 | 7.33e-11 | 60.1 |
| MS.gene049409.t1 | MTR_7g062220 | 52.632 | 57 | 24 | 1 | 142 | 198 | 125 | 178 | 8.71e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049409.t1 | AT3G56400 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.43e-50 | 170 |
| MS.gene049409.t1 | AT2G40750 | 34.568 | 324 | 184 | 7 | 10 | 310 | 8 | 326 | 5.45e-47 | 162 |
| MS.gene049409.t1 | AT5G24110 | 34.715 | 193 | 89 | 7 | 13 | 200 | 12 | 172 | 6.29e-23 | 97.1 |
| MS.gene049409.t1 | AT2G46400 | 30.357 | 224 | 102 | 5 | 13 | 226 | 4 | 183 | 8.96e-22 | 93.6 |
| MS.gene049409.t1 | AT4G11070 | 31.280 | 211 | 121 | 7 | 13 | 208 | 7 | 208 | 1.13e-21 | 94.0 |
| MS.gene049409.t1 | AT1G66550 | 34.054 | 185 | 97 | 4 | 18 | 202 | 10 | 169 | 2.68e-21 | 91.7 |
| MS.gene049409.t1 | AT1G66550 | 34.595 | 185 | 91 | 6 | 18 | 202 | 10 | 164 | 6.19e-21 | 90.5 |
| MS.gene049409.t1 | AT1G66560 | 27.642 | 246 | 140 | 6 | 11 | 250 | 3 | 216 | 6.81e-20 | 87.8 |
| MS.gene049409.t1 | AT5G22570 | 28.704 | 216 | 114 | 4 | 18 | 217 | 11 | 202 | 7.38e-20 | 88.2 |
| MS.gene049409.t1 | AT1G66600 | 29.752 | 242 | 136 | 5 | 18 | 259 | 10 | 217 | 9.26e-20 | 87.0 |
| MS.gene049409.t1 | AT5G01900 | 32.973 | 185 | 100 | 4 | 18 | 201 | 9 | 170 | 3.08e-19 | 86.3 |
| MS.gene049409.t1 | AT4G11070 | 29.126 | 206 | 100 | 6 | 13 | 208 | 7 | 176 | 1.18e-18 | 84.7 |
| MS.gene049409.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 174 | 259 | 2.34e-18 | 84.3 |
| MS.gene049409.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 183 | 268 | 3.10e-18 | 84.0 |
| MS.gene049409.t1 | AT4G23810 | 50.704 | 71 | 34 | 1 | 142 | 211 | 159 | 229 | 5.23e-18 | 83.6 |
| MS.gene049409.t1 | AT5G45260 | 35.714 | 154 | 92 | 4 | 47 | 198 | 1117 | 1265 | 2.97e-16 | 80.1 |
| MS.gene049409.t1 | AT1G80590 | 32.432 | 185 | 77 | 5 | 18 | 202 | 10 | 146 | 1.13e-14 | 72.8 |
| MS.gene049409.t1 | AT4G23550 | 49.153 | 59 | 28 | 1 | 140 | 198 | 139 | 195 | 7.10e-12 | 65.9 |
| MS.gene049409.t1 | AT5G52830 | 41.772 | 79 | 40 | 2 | 125 | 199 | 145 | 221 | 7.21e-12 | 65.9 |
| MS.gene049409.t1 | AT5G13080 | 43.243 | 74 | 38 | 2 | 126 | 199 | 53 | 122 | 2.48e-11 | 61.2 |
| MS.gene049409.t1 | AT2G46130 | 42.029 | 69 | 35 | 2 | 140 | 206 | 29 | 94 | 2.55e-11 | 60.5 |
| MS.gene049409.t1 | AT4G01250 | 38.961 | 77 | 42 | 3 | 125 | 198 | 109 | 183 | 5.63e-11 | 62.8 |
| MS.gene049409.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene049409.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene049409.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
Find 61 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGAAATTGATTT+TGG | 0.027971 | 3.1:+75074775 | MS.gene049409:CDS |
| TATGTAATTTGGTACATTTC+TGG | 0.119421 | 3.1:-75074442 | None:intergenic |
| TTGTTGGCAGTGACAGTTTC+AGG | 0.206708 | 3.1:-75072714 | None:intergenic |
| TGCAACCTTGGTCATGCTTC+CGG | 0.212153 | 3.1:-75074384 | None:intergenic |
| CATTCTCTGAAGATACTAAT+TGG | 0.227820 | 3.1:+75074515 | MS.gene049409:CDS |
| TGATGTTACTGACAACTTAT+TGG | 0.245112 | 3.1:+75074681 | MS.gene049409:CDS |
| GCAACCTTGGTCATGCTTCC+GGG | 0.281835 | 3.1:-75074383 | None:intergenic |
| TTCTATCAATTGTACCTGTT+TGG | 0.295646 | 3.1:-75074413 | None:intergenic |
| CAGAATCATGTGAATCATTC+AGG | 0.322565 | 3.1:+75072930 | MS.gene049409:CDS |
| CATGTGAATCATTCAGGTTC+AGG | 0.330373 | 3.1:+75072936 | MS.gene049409:CDS |
| AAGAATCCTGTTTGTTCTGA+TGG | 0.357623 | 3.1:+75072804 | MS.gene049409:CDS |
| GTCTCCTTCTGTTAAGGAAT+TGG | 0.359709 | 3.1:+75072827 | MS.gene049409:CDS |
| GTTTGGTTGCTTTGCAACCT+TGG | 0.376612 | 3.1:-75074396 | None:intergenic |
| AGTAGTATTGTCGTCGTTGT+TGG | 0.382130 | 3.1:-75074650 | None:intergenic |
| TAATTTGCAGGAGTTACTTC+AGG | 0.382346 | 3.1:+75074356 | MS.gene049409:intron |
| GAAAGCCAATGTATGTAATT+TGG | 0.392701 | 3.1:-75074453 | None:intergenic |
| TCAGAGAATGAGACCATTTG+TGG | 0.397937 | 3.1:-75074502 | None:intergenic |
| TGATGGGTCTCCTTCTGTTA+AGG | 0.399624 | 3.1:+75072821 | MS.gene049409:CDS |
| ACTCATAAAAGAGCTTCTTC+AGG | 0.399737 | 3.1:+75072746 | MS.gene049409:CDS |
| CAATTGGTGACACTCATTCC+TGG | 0.409828 | 3.1:+75073275 | MS.gene049409:CDS |
| ATTCTCTGAAGATACTAATT+GGG | 0.419258 | 3.1:+75074516 | MS.gene049409:CDS |
| CCTCTTCGATCCTTTGTAGT+TGG | 0.426598 | 3.1:-75073041 | None:intergenic |
| ACCATAGTCTCTAAAACAAT+TGG | 0.428053 | 3.1:+75073259 | MS.gene049409:CDS |
| TTCAGGGGAACATGGTTCAT+TGG | 0.430865 | 3.1:+75072953 | MS.gene049409:CDS |
| GTAGTATTGTCGTCGTTGTT+GGG | 0.438655 | 3.1:-75074649 | None:intergenic |
| AGAATCCTGTTTGTTCTGAT+GGG | 0.439454 | 3.1:+75072805 | MS.gene049409:CDS |
| ACCTTGGGAAATTAGAATTG+AGG | 0.441878 | 3.1:-75073321 | None:intergenic |
| TCCTTCTGTTAAGGAATTGG+TGG | 0.442137 | 3.1:+75072830 | MS.gene049409:CDS |
| AGACCATTTGTGGAGTTTGT+AGG | 0.471099 | 3.1:-75074492 | None:intergenic |
| CTTCTGACCGTACTTTCTCC+AGG | 0.478180 | 3.1:-75073293 | None:intergenic |
| CACCCTACAAACTCCACAAA+TGG | 0.486229 | 3.1:+75074489 | MS.gene049409:CDS |
| ACTTATTGGATCCTAGTTTG+TGG | 0.490456 | 3.1:+75074695 | MS.gene049409:CDS |
| ATGTGAATCATTCAGGTTCA+GGG | 0.513638 | 3.1:+75072937 | MS.gene049409:CDS |
| CTCATAAAAGAGCTTCTTCA+GGG | 0.513650 | 3.1:+75072747 | MS.gene049409:CDS |
| CATTCAGGTTCAGGGGAACA+TGG | 0.514743 | 3.1:+75072945 | MS.gene049409:CDS |
| GCAGGAATACACAATATCCT+TGG | 0.514816 | 3.1:-75074743 | None:intergenic |
| AGGTTGCAAAGCAACCAAAC+AGG | 0.523803 | 3.1:+75074399 | MS.gene049409:CDS |
| GACCATTTGTGGAGTTTGTA+GGG | 0.524922 | 3.1:-75074491 | None:intergenic |
| AGGGGAACATGGTTCATTGG+TGG | 0.531988 | 3.1:+75072956 | MS.gene049409:CDS |
| GGAGACCCATCAGAACAAAC+AGG | 0.533380 | 3.1:-75072810 | None:intergenic |
| CACATGTTATTAGCTCAGAA+AGG | 0.537868 | 3.1:+75074605 | MS.gene049409:CDS |
| GAAGAGGTTCCTACAAAAGA+AGG | 0.538026 | 3.1:+75073057 | MS.gene049409:CDS |
| TTAAAATCAGACCACAAACT+AGG | 0.545977 | 3.1:-75074706 | None:intergenic |
| GCCACCAATTCCTTAACAGA+AGG | 0.556097 | 3.1:-75072831 | None:intergenic |
| TGAAGATTGTAGTTTAGATG+AGG | 0.565987 | 3.1:+75072902 | MS.gene049409:CDS |
| ATGTACCAAATTACATACAT+TGG | 0.567198 | 3.1:+75074448 | MS.gene049409:CDS |
| CTGGAGAAAGTACGGTCAGA+AGG | 0.567429 | 3.1:+75073294 | MS.gene049409:CDS |
| TCCTCAATTCTAATTTCCCA+AGG | 0.568294 | 3.1:+75073320 | MS.gene049409:CDS |
| GTCAGAACCTCCTTTGAGTG+AGG | 0.572819 | 3.1:-75074562 | None:intergenic |
| GGAGTTACTTCAGGTGCACC+CGG | 0.575709 | 3.1:+75074365 | MS.gene049409:intron |
| ACTCATTCCTGGAGAAAGTA+CGG | 0.586004 | 3.1:+75073286 | MS.gene049409:CDS |
| GAGATTGTCGCCAACTACAA+AGG | 0.592832 | 3.1:+75073031 | MS.gene049409:CDS |
| TTGTCAGTAACATCACTCCT+TGG | 0.594881 | 3.1:-75074673 | None:intergenic |
| GAATTCTAATCCTCACTCAA+AGG | 0.633382 | 3.1:+75074552 | MS.gene049409:CDS |
| CATTTGTGGAGTTTGTAGGG+TGG | 0.641904 | 3.1:-75074488 | None:intergenic |
| TTCTAATCCTCACTCAAAGG+AGG | 0.641909 | 3.1:+75074555 | MS.gene049409:CDS |
| TGTGAATCATTCAGGTTCAG+GGG | 0.655461 | 3.1:+75072938 | MS.gene049409:CDS |
| TGCACCCGGAAGCATGACCA+AGG | 0.656558 | 3.1:+75074379 | MS.gene049409:CDS |
| ACGACGACAATACTACTCCA+AGG | 0.670998 | 3.1:+75074656 | MS.gene049409:CDS |
| GCAGGAAAACAGATGAGACA+AGG | 0.694593 | 3.1:+75073236 | MS.gene049409:intron |
| CCAACTACAAAGGATCGAAG+AGG | 0.701163 | 3.1:+75073041 | MS.gene049409:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAATTAG+TGG | - | chr3.1:75074199-75074218 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATTAGT+GGG | - | chr3.1:75074198-75074217 | None:intergenic | 10.0% |
| !! | GATATTTATTAAAATTGATT+TGG | + | chr3.1:75073594-75073613 | MS.gene049409:intron | 10.0% |
| !!! | AAATTTTACACTTAAATTTA+TGG | + | chr3.1:75073675-75073694 | MS.gene049409:intron | 10.0% |
| !! | ATATAATCTCATTTCAAAAT+CGG | - | chr3.1:75074154-75074173 | None:intergenic | 15.0% |
| !! | TTAAGTGTAAAATTTACTTT+GGG | - | chr3.1:75073670-75073689 | None:intergenic | 15.0% |
| !! | TTTAAGTGTAAAATTTACTT+TGG | - | chr3.1:75073671-75073690 | None:intergenic | 15.0% |
| !!! | AAAATCTTGAAATTGATTTT+GGG | + | chr3.1:75074776-75074795 | MS.gene049409:CDS | 15.0% |
| !! | AACTATAAAGTGTATACAAA+AGG | - | chr3.1:75074069-75074088 | None:intergenic | 20.0% |
| !! | GAATTGATTAACTAATTAGT+GGG | - | chr3.1:75074232-75074251 | None:intergenic | 20.0% |
| !! | TAAGTGTAAAATTTACTTTG+GGG | - | chr3.1:75073669-75073688 | None:intergenic | 20.0% |
| !! | TAGAAAACAAAAAAATCAAC+AGG | - | chr3.1:75073150-75073169 | None:intergenic | 20.0% |
| !! | TGAATTGATTAACTAATTAG+TGG | - | chr3.1:75074233-75074252 | None:intergenic | 20.0% |
| !! | TTACACTTAAATTTATGGTT+AGG | + | chr3.1:75073680-75073699 | MS.gene049409:intron | 20.0% |
| !! | TTATAGTTTCAACAAAATCA+TGG | + | chr3.1:75074081-75074100 | MS.gene049409:intron | 20.0% |
| !! | TTTATTCTTAATTATTGTGC+AGG | + | chr3.1:75073218-75073237 | MS.gene049409:intron | 20.0% |
| !!! | AAATCTTGAAATTGATTTTG+GGG | + | chr3.1:75074777-75074796 | MS.gene049409:CDS | 20.0% |
| !!! | ATGTTTTTTTTTTTCCTTGT+TGG | + | chr3.1:75073108-75073127 | MS.gene049409:intron | 20.0% |
| !!! | CAAAATCTTGAAATTGATTT+TGG | + | chr3.1:75074775-75074794 | MS.gene049409:CDS | 20.0% |
| ! | ACTTGCTCATATTGTATAAA+TGG | - | chr3.1:75073422-75073441 | None:intergenic | 25.0% |
| ! | AGGAAAATAATGATTACCTT+GGG | - | chr3.1:75073339-75073358 | None:intergenic | 25.0% |
| ! | ATGTACCAAATTACATACAT+TGG | + | chr3.1:75074448-75074467 | MS.gene049409:CDS | 25.0% |
| ! | TATGTAATTTGGTACATTTC+TGG | - | chr3.1:75074445-75074464 | None:intergenic | 25.0% |
| ! | TCAACTCTTACAAAATCAAT+TGG | + | chr3.1:75073771-75073790 | MS.gene049409:intron | 25.0% |
| ! | TGAGATTATATACTATCAAG+TGG | + | chr3.1:75074163-75074182 | MS.gene049409:intron | 25.0% |
| !! | ATTCTCTGAAGATACTAATT+GGG | + | chr3.1:75074516-75074535 | MS.gene049409:CDS | 25.0% |
| !!! | AGATTATAGAAGCATTTTAG+AGG | + | chr3.1:75073531-75073550 | MS.gene049409:intron | 25.0% |
| AAATCAGTAGAAAAAAGCAG+AGG | - | chr3.1:75073359-75073378 | None:intergenic | 30.0% | |
| ATATTGAAACATGCACATAG+CGG | - | chr3.1:75073818-75073837 | None:intergenic | 30.0% | |
| ATGTGCATGTTTCAATATCA+TGG | + | chr3.1:75073820-75073839 | MS.gene049409:intron | 30.0% | |
| CCTGCAAATTATCATTGAAA+AGG | - | chr3.1:75074347-75074366 | None:intergenic | 30.0% | |
| GAAAGCCAATGTATGTAATT+TGG | - | chr3.1:75074456-75074475 | None:intergenic | 30.0% | |
| GAGGAAAATAATGATTACCT+TGG | - | chr3.1:75073340-75073359 | None:intergenic | 30.0% | |
| TGAAGATTGTAGTTTAGATG+AGG | + | chr3.1:75072902-75072921 | MS.gene049409:CDS | 30.0% | |
| TGATGTTACTGACAACTTAT+TGG | + | chr3.1:75074681-75074700 | MS.gene049409:CDS | 30.0% | |
| TTAAAATCAGACCACAAACT+AGG | - | chr3.1:75074709-75074728 | None:intergenic | 30.0% | |
| TTCTATCAATTGTACCTGTT+TGG | - | chr3.1:75074416-75074435 | None:intergenic | 30.0% | |
| ! | AAAACAGTACCTTCTTTTGT+AGG | - | chr3.1:75073069-75073088 | None:intergenic | 30.0% |
| ! | CATTCTCTGAAGATACTAAT+TGG | + | chr3.1:75074515-75074534 | MS.gene049409:CDS | 30.0% |
| ! | TATGAGTAGCTTCTTTTTGT+TGG | - | chr3.1:75072733-75072752 | None:intergenic | 30.0% |
| !! | ACCATAGTCTCTAAAACAAT+TGG | + | chr3.1:75073259-75073278 | MS.gene049409:CDS | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | chr3.1:75074001-75074020 | None:intergenic | 30.0% |
| !! | CCTTTTCAATGATAATTTGC+AGG | + | chr3.1:75074344-75074363 | MS.gene049409:intron | 30.0% |
| !! | TAGTTTGTGGTCTGATTTTA+AGG | + | chr3.1:75074708-75074727 | MS.gene049409:CDS | 30.0% |
| !! | TATGGTTAGGTTCACTTTTA+CGG | + | chr3.1:75073693-75073712 | MS.gene049409:intron | 30.0% |
| !!! | AAGAAGGTACTGTTTTTGTA+CGG | + | chr3.1:75073073-75073092 | MS.gene049409:intron | 30.0% |
| !!! | ACCAATTGTTTTAGAGACTA+TGG | - | chr3.1:75073263-75073282 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr3.1:75074015-75074034 | None:intergenic | 30.0% |
| AAGAATCCTGTTTGTTCTGA+TGG | + | chr3.1:75072804-75072823 | MS.gene049409:CDS | 35.0% | |
| ACCTTGGGAAATTAGAATTG+AGG | - | chr3.1:75073324-75073343 | None:intergenic | 35.0% | |
| ACTCATAAAAGAGCTTCTTC+AGG | + | chr3.1:75072746-75072765 | MS.gene049409:CDS | 35.0% | |
| ACTTATTGGATCCTAGTTTG+TGG | + | chr3.1:75074695-75074714 | MS.gene049409:CDS | 35.0% | |
| AGAATCCTGTTTGTTCTGAT+GGG | + | chr3.1:75072805-75072824 | MS.gene049409:CDS | 35.0% | |
| CACATGTTATTAGCTCAGAA+AGG | + | chr3.1:75074605-75074624 | MS.gene049409:CDS | 35.0% | |
| CAGAATCATGTGAATCATTC+AGG | + | chr3.1:75072930-75072949 | MS.gene049409:CDS | 35.0% | |
| CTCATAAAAGAGCTTCTTCA+GGG | + | chr3.1:75072747-75072766 | MS.gene049409:CDS | 35.0% | |
| GAATTCTAATCCTCACTCAA+AGG | + | chr3.1:75074552-75074571 | MS.gene049409:CDS | 35.0% | |
| GCATTATTTGCCACAATTCA+AGG | + | chr3.1:75073936-75073955 | MS.gene049409:intron | 35.0% | |
| GGCAAATAATGCATTGTGAT+TGG | - | chr3.1:75073928-75073947 | None:intergenic | 35.0% | |
| TCCTCAATTCTAATTTCCCA+AGG | + | chr3.1:75073320-75073339 | MS.gene049409:CDS | 35.0% | |
| TTATTTGCCACAATTCAAGG+AGG | + | chr3.1:75073939-75073958 | MS.gene049409:intron | 35.0% | |
| ! | ATGTGAATCATTCAGGTTCA+GGG | + | chr3.1:75072937-75072956 | MS.gene049409:CDS | 35.0% |
| ! | TAAGGATTTTGAACTCTCCA+AGG | + | chr3.1:75074726-75074745 | MS.gene049409:CDS | 35.0% |
| ! | TAATTTGCAGGAGTTACTTC+AGG | + | chr3.1:75074356-75074375 | MS.gene049409:intron | 35.0% |
| !!! | AAGATTTTGAGATTCAGTGC+AGG | - | chr3.1:75074764-75074783 | None:intergenic | 35.0% |
| ACTCATTCCTGGAGAAAGTA+CGG | + | chr3.1:75073286-75073305 | MS.gene049409:CDS | 40.0% | |
| AGACCATTTGTGGAGTTTGT+AGG | - | chr3.1:75074495-75074514 | None:intergenic | 40.0% | |
| AGTAGTATTGTCGTCGTTGT+TGG | - | chr3.1:75074653-75074672 | None:intergenic | 40.0% | |
| CCTTGTTGGAATGAAAACGT+GGG | + | chr3.1:75073122-75073141 | MS.gene049409:intron | 40.0% | |
| GAAGAGGTTCCTACAAAAGA+AGG | + | chr3.1:75073057-75073076 | MS.gene049409:CDS | 40.0% | |
| GACCATTTGTGGAGTTTGTA+GGG | - | chr3.1:75074494-75074513 | None:intergenic | 40.0% | |
| GCAGGAATACACAATATCCT+TGG | - | chr3.1:75074746-75074765 | None:intergenic | 40.0% | |
| GTAGTATTGTCGTCGTTGTT+GGG | - | chr3.1:75074652-75074671 | None:intergenic | 40.0% | |
| GTCTCCTTCTGTTAAGGAAT+TGG | + | chr3.1:75072827-75072846 | MS.gene049409:CDS | 40.0% | |
| TCAGAGAATGAGACCATTTG+TGG | - | chr3.1:75074505-75074524 | None:intergenic | 40.0% | |
| TCCTTCTGTTAAGGAATTGG+TGG | + | chr3.1:75072830-75072849 | MS.gene049409:CDS | 40.0% | |
| TCCTTGTTGGAATGAAAACG+TGG | + | chr3.1:75073121-75073140 | MS.gene049409:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr3.1:75073962-75073981 | MS.gene049409:intron | 40.0% | |
| TTCTAATCCTCACTCAAAGG+AGG | + | chr3.1:75074555-75074574 | MS.gene049409:CDS | 40.0% | |
| TTGTCAGTAACATCACTCCT+TGG | - | chr3.1:75074676-75074695 | None:intergenic | 40.0% | |
| ! | CATGTGAATCATTCAGGTTC+AGG | + | chr3.1:75072936-75072955 | MS.gene049409:CDS | 40.0% |
| ! | TGTGAATCATTCAGGTTCAG+GGG | + | chr3.1:75072938-75072957 | MS.gene049409:CDS | 40.0% |
| !! | ATAGCGGATGTTTGGTTATG+CGG | - | chr3.1:75073802-75073821 | None:intergenic | 40.0% |
| !!! | ACTGTTTTTGTACGGACACA+AGG | + | chr3.1:75073081-75073100 | MS.gene049409:intron | 40.0% |
| AAACACTATACCAGCTAGCG+CGG | - | chr3.1:75074291-75074310 | None:intergenic | 45.0% | |
| ACGACGACAATACTACTCCA+AGG | + | chr3.1:75074656-75074675 | MS.gene049409:CDS | 45.0% | |
| AGGTTGCAAAGCAACCAAAC+AGG | + | chr3.1:75074399-75074418 | MS.gene049409:CDS | 45.0% | |
| CACCCTACAAACTCCACAAA+TGG | + | chr3.1:75074489-75074508 | MS.gene049409:CDS | 45.0% | |
| CATTTGTGGAGTTTGTAGGG+TGG | - | chr3.1:75074491-75074510 | None:intergenic | 45.0% | |
| CCAACTACAAAGGATCGAAG+AGG | + | chr3.1:75073041-75073060 | MS.gene049409:CDS | 45.0% | |
| CCTCTTCGATCCTTTGTAGT+TGG | - | chr3.1:75073044-75073063 | None:intergenic | 45.0% | |
| GAGATTGTCGCCAACTACAA+AGG | + | chr3.1:75073031-75073050 | MS.gene049409:CDS | 45.0% | |
| GCAGGAAAACAGATGAGACA+AGG | + | chr3.1:75073236-75073255 | MS.gene049409:intron | 45.0% | |
| GCCACCAATTCCTTAACAGA+AGG | - | chr3.1:75072834-75072853 | None:intergenic | 45.0% | |
| TTCAGGGGAACATGGTTCAT+TGG | + | chr3.1:75072953-75072972 | MS.gene049409:CDS | 45.0% | |
| TTGTTGGCAGTGACAGTTTC+AGG | - | chr3.1:75072717-75072736 | None:intergenic | 45.0% | |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr3.1:75073956-75073975 | MS.gene049409:intron | 45.0% |
| ! | CAATTGGTGACACTCATTCC+TGG | + | chr3.1:75073275-75073294 | MS.gene049409:CDS | 45.0% |
| ! | CCCACGTTTTCATTCCAACA+AGG | - | chr3.1:75073125-75073144 | None:intergenic | 45.0% |
| ! | GTTTGGTTGCTTTGCAACCT+TGG | - | chr3.1:75074399-75074418 | None:intergenic | 45.0% |
| ! | TAGCGGATGTTTGGTTATGC+GGG | - | chr3.1:75073801-75073820 | None:intergenic | 45.0% |
| ! | TGATGGGTCTCCTTCTGTTA+AGG | + | chr3.1:75072821-75072840 | MS.gene049409:CDS | 45.0% |
| !! | ACATGCACATAGCGGATGTT+TGG | - | chr3.1:75073810-75073829 | None:intergenic | 45.0% |
| !!! | TAGTAAAAAATATTTTTTAA+CGG | + | chr3.1:75073488-75073507 | MS.gene049409:intron | 5.0% |
| AACACTATACCAGCTAGCGC+GGG | - | chr3.1:75074290-75074309 | None:intergenic | 50.0% | |
| ACAAATTAACCCGCGCTAGC+TGG | + | chr3.1:75074278-75074297 | MS.gene049409:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr3.1:75073949-75073968 | None:intergenic | 50.0% | |
| AGGGGAACATGGTTCATTGG+TGG | + | chr3.1:75072956-75072975 | MS.gene049409:CDS | 50.0% | |
| CTTCTGACCGTACTTTCTCC+AGG | - | chr3.1:75073296-75073315 | None:intergenic | 50.0% | |
| GGAGACCCATCAGAACAAAC+AGG | - | chr3.1:75072813-75072832 | None:intergenic | 50.0% | |
| GTCAGAACCTCCTTTGAGTG+AGG | - | chr3.1:75074565-75074584 | None:intergenic | 50.0% | |
| TGCAACCTTGGTCATGCTTC+CGG | - | chr3.1:75074387-75074406 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr3.1:75073944-75073963 | MS.gene049409:intron | 50.0% | |
| ! | CATTCAGGTTCAGGGGAACA+TGG | + | chr3.1:75072945-75072964 | MS.gene049409:CDS | 50.0% |
| ! | CTGGAGAAAGTACGGTCAGA+AGG | + | chr3.1:75073294-75073313 | MS.gene049409:CDS | 50.0% |
| GCAACCTTGGTCATGCTTCC+GGG | - | chr3.1:75074386-75074405 | None:intergenic | 55.0% | |
| GGAGTTACTTCAGGTGCACC+CGG | + | chr3.1:75074365-75074384 | MS.gene049409:intron | 55.0% | |
| ! | TGCACCCGGAAGCATGACCA+AGG | + | chr3.1:75074379-75074398 | MS.gene049409:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75072699 | 75074858 | 75072699 | ID=MS.gene049409 |
| chr3.1 | mRNA | 75072699 | 75074858 | 75072699 | ID=MS.gene049409.t1;Parent=MS.gene049409 |
| chr3.1 | exon | 75072699 | 75073078 | 75072699 | ID=MS.gene049409.t1.exon1;Parent=MS.gene049409.t1 |
| chr3.1 | CDS | 75072699 | 75073078 | 75072699 | ID=cds.MS.gene049409.t1;Parent=MS.gene049409.t1 |
| chr3.1 | exon | 75073240 | 75073341 | 75073240 | ID=MS.gene049409.t1.exon2;Parent=MS.gene049409.t1 |
| chr3.1 | CDS | 75073240 | 75073341 | 75073240 | ID=cds.MS.gene049409.t1;Parent=MS.gene049409.t1 |
| chr3.1 | exon | 75074366 | 75074858 | 75074366 | ID=MS.gene049409.t1.exon3;Parent=MS.gene049409.t1 |
| chr3.1 | CDS | 75074366 | 75074858 | 75074366 | ID=cds.MS.gene049409.t1;Parent=MS.gene049409.t1 |
| Gene Sequence |
| Protein sequence |
