Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49823.t1 | XP_013451540.2 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 1.20E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49823.t1 | Q8LGJ5 | 52.1 | 236 | 104 | 5 | 58 | 290 | 47 | 276 | 2.0e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49823.t1 | A0A396HBT9 | 97.6 | 293 | 7 | 0 | 1 | 293 | 1 | 293 | 8.7e-168 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053421 | MS.gene49823 | 0.804404 | 2.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49823.t1 | MTR_7g086380 | 78.723 | 282 | 57 | 3 | 12 | 291 | 1 | 281 | 3.10e-162 | 452 |
| MS.gene49823.t1 | MTR_6g027730 | 99.507 | 203 | 1 | 0 | 91 | 293 | 1 | 203 | 1.65e-152 | 424 |
| MS.gene49823.t1 | MTR_6g011530 | 49.793 | 241 | 112 | 5 | 58 | 291 | 41 | 279 | 7.90e-75 | 230 |
| MS.gene49823.t1 | MTR_7g009710 | 51.770 | 226 | 99 | 4 | 58 | 278 | 45 | 265 | 6.03e-74 | 228 |
| MS.gene49823.t1 | MTR_2g058330 | 44.177 | 249 | 120 | 6 | 55 | 288 | 25 | 269 | 9.36e-67 | 209 |
| MS.gene49823.t1 | MTR_2g055320 | 46.377 | 207 | 99 | 4 | 55 | 249 | 16 | 222 | 1.89e-58 | 188 |
| MS.gene49823.t1 | MTR_6g027740 | 93.182 | 88 | 6 | 0 | 1 | 88 | 1 | 88 | 2.78e-53 | 169 |
| MS.gene49823.t1 | MTR_2g084225 | 40.833 | 240 | 125 | 7 | 58 | 288 | 5 | 236 | 4.04e-53 | 173 |
| MS.gene49823.t1 | MTR_4g080083 | 39.256 | 242 | 129 | 7 | 57 | 288 | 4 | 237 | 1.15e-52 | 172 |
| MS.gene49823.t1 | MTR_2g016230 | 38.843 | 242 | 132 | 6 | 58 | 288 | 4 | 240 | 2.21e-50 | 166 |
| MS.gene49823.t1 | MTR_4g080083 | 42.564 | 195 | 97 | 5 | 57 | 242 | 4 | 192 | 4.10e-50 | 164 |
| MS.gene49823.t1 | MTR_5g064550 | 35.743 | 249 | 130 | 6 | 53 | 289 | 1 | 231 | 7.20e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49823.t1 | AT5G39890 | 52.743 | 237 | 101 | 6 | 58 | 290 | 47 | 276 | 4.57e-77 | 236 |
| MS.gene49823.t1 | AT5G15120 | 46.457 | 254 | 122 | 7 | 44 | 288 | 43 | 291 | 3.10e-73 | 227 |
| MS.gene49823.t1 | AT5G39890 | 56.410 | 195 | 75 | 5 | 58 | 249 | 47 | 234 | 4.63e-68 | 212 |
| MS.gene49823.t1 | AT1G18490 | 40.449 | 267 | 142 | 6 | 37 | 288 | 16 | 280 | 9.02e-63 | 200 |
| MS.gene49823.t1 | AT3G58670 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.08e-56 | 183 |
| MS.gene49823.t1 | AT3G58670 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.08e-56 | 183 |
| MS.gene49823.t1 | AT3G58670 | 42.917 | 240 | 124 | 6 | 58 | 288 | 5 | 240 | 1.08e-56 | 183 |
| MS.gene49823.t1 | AT2G42670 | 40.336 | 238 | 130 | 5 | 59 | 288 | 6 | 239 | 1.62e-55 | 180 |
| MS.gene49823.t1 | AT2G42670 | 40.167 | 239 | 130 | 6 | 59 | 288 | 6 | 240 | 1.10e-53 | 175 |
| MS.gene49823.t1 | AT3G58670 | 48.571 | 175 | 86 | 3 | 115 | 288 | 26 | 197 | 3.39e-49 | 162 |
| MS.gene49823.t1 | AT2G42670 | 46.203 | 158 | 81 | 3 | 132 | 288 | 18 | 172 | 1.95e-40 | 139 |
Find 50 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGGATGGGATTGAATATT+TGG | 0.087793 | 6.3:-19496172 | MS.gene49823:CDS |
| CTCATGCAAGGAAACATTTA+AGG | 0.167944 | 6.3:-19499185 | MS.gene49823:CDS |
| TTCTCTTTGAAAATGCTTTC+AGG | 0.169239 | 6.3:+19498088 | None:intergenic |
| AAAATTATCACATTTGTATA+TGG | 0.267408 | 6.3:+19498045 | None:intergenic |
| TTACTTAGTCCAACATCTTC+TGG | 0.273780 | 6.3:+19498130 | None:intergenic |
| TATAGGGAAGTCTCTATAAT+TGG | 0.282448 | 6.3:+19496144 | None:intergenic |
| ACAATCTCTGCCATCATCTT+TGG | 0.288346 | 6.3:+19496834 | None:intergenic |
| TGGAGGTGTATCTATGAAAA+TGG | 0.310811 | 6.3:-19499359 | MS.gene49823:CDS |
| CTGCCATCATCTTTGGAATA+AGG | 0.310958 | 6.3:+19496841 | None:intergenic |
| CACAAACTATGTCACATTCT+TGG | 0.323808 | 6.3:-19499130 | MS.gene49823:intron |
| TGCACATTAAGTCATATGAT+TGG | 0.371146 | 6.3:-19497831 | MS.gene49823:CDS |
| TGTGCTGTTCTTGATGTCAT+TGG | 0.379870 | 6.3:-19496868 | MS.gene49823:CDS |
| TTAACCTTGCTACTATGATA+AGG | 0.405817 | 6.3:+19499247 | None:intergenic |
| AAAAGTTGGTTATGTGAAAA+GGG | 0.420424 | 6.3:-19499290 | MS.gene49823:CDS |
| TGTGGTGAAGGGACAGTGTC+AGG | 0.421729 | 6.3:+19499160 | None:intergenic |
| TAACATATGAAGGAAGATAT+TGG | 0.443132 | 6.3:-19499379 | None:intergenic |
| ATGGATGGGATTGAATATTT+GGG | 0.444661 | 6.3:-19496171 | MS.gene49823:CDS |
| GAGTTATGGCTGTGAATTCA+TGG | 0.446167 | 6.3:+19496893 | None:intergenic |
| TTACTGAAAACAGTCATTCC+TGG | 0.448277 | 6.3:+19497871 | None:intergenic |
| GCACATTAAGTCATATGATT+GGG | 0.450457 | 6.3:-19497830 | MS.gene49823:CDS |
| TCATTCCTGGGTGGTTATGA+AGG | 0.451907 | 6.3:+19497884 | None:intergenic |
| AACAAATTGTGAGAAACATC+AGG | 0.461333 | 6.3:+19497802 | None:intergenic |
| AAAGAAGAAAATGAAAGTTA+TGG | 0.462932 | 6.3:-19496231 | MS.gene49823:CDS |
| GATGCCAGAAAACTCTCAAA+TGG | 0.465281 | 6.3:-19496190 | MS.gene49823:CDS |
| AAGAACAGCACATGGAGTTA+TGG | 0.471493 | 6.3:+19496879 | None:intergenic |
| CCAGAAAACTCTCAAATGGA+TGG | 0.498542 | 6.3:-19496186 | MS.gene49823:CDS |
| GAAATTATTTGTCTCATGCA+AGG | 0.509216 | 6.3:-19499197 | MS.gene49823:CDS |
| TGAAGTGCTTTATTAGACAT+TGG | 0.510691 | 6.3:+19499220 | None:intergenic |
| AGGGAAGTCTCTATAATTGG+AGG | 0.527159 | 6.3:+19496147 | None:intergenic |
| TCATGCAAGGAAACATTTAA+GGG | 0.532868 | 6.3:-19499184 | MS.gene49823:CDS |
| CCTCCTTATTCCAAAGATGA+TGG | 0.537366 | 6.3:-19496844 | MS.gene49823:CDS |
| ATGGTTGTATATGTGACCCT+TGG | 0.543482 | 6.3:+19498064 | None:intergenic |
| TACTGGGAAAAGCAGTGTAA+AGG | 0.545686 | 6.3:+19496794 | None:intergenic |
| TTTGAATACATACATTGAGA+TGG | 0.546750 | 6.3:+19497772 | None:intergenic |
| TACTGAAAACAGTCATTCCT+GGG | 0.547209 | 6.3:+19497872 | None:intergenic |
| CATTCCTGGGTGGTTATGAA+GGG | 0.552215 | 6.3:+19497885 | None:intergenic |
| CAGAAAACTCTCAAATGGAT+GGG | 0.570322 | 6.3:-19496185 | MS.gene49823:CDS |
| AAGAAAATGAAAGTTATGGA+TGG | 0.575704 | 6.3:-19496227 | MS.gene49823:CDS |
| AGGTGTATCTATGAAAATGG+AGG | 0.615461 | 6.3:-19499356 | MS.gene49823:CDS |
| AACATGAAGCCAGAAGATGT+TGG | 0.636253 | 6.3:-19498139 | MS.gene49823:CDS |
| CCATCATCTTTGGAATAAGG+AGG | 0.645071 | 6.3:+19496844 | None:intergenic |
| CATATGAAGGAAGATATTGG+AGG | 0.649850 | 6.3:-19499376 | MS.gene49823:CDS |
| GAAACCTTATCATAGTAGCA+AGG | 0.650637 | 6.3:-19499251 | MS.gene49823:CDS |
| ATTCCTGGGTGGTTATGAAG+GGG | 0.652761 | 6.3:+19497886 | None:intergenic |
| ATGACATCAAGAACAGCACA+TGG | 0.655518 | 6.3:+19496871 | None:intergenic |
| GGTGTATCTATGAAAATGGA+GGG | 0.655645 | 6.3:-19499355 | MS.gene49823:CDS |
| GTATCTATGAAAATGGAGGG+TGG | 0.667112 | 6.3:-19499352 | MS.gene49823:CDS |
| ATTCCCCTTCATAACCACCC+AGG | 0.695707 | 6.3:-19497889 | MS.gene49823:CDS |
| TGAAAACAGTCATTCCTGGG+TGG | 0.711444 | 6.3:+19497875 | None:intergenic |
| TACAACACTGAAGTGTCACA+TGG | 0.758295 | 6.3:+19496937 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCCATTAAAATTTTAT+CGG | + | chr6.3:19499076-19499095 | None:intergenic | 10.0% |
| !!! | TAACAAATTTTATATCATAA+CGG | + | chr6.3:19498768-19498787 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTACAATTTGTT+TGG | - | chr6.3:19496771-19496790 | MS.gene49823:intron | 10.0% |
| !!! | TTTAAATTATTCATCATTTT+CGG | - | chr6.3:19497256-19497275 | MS.gene49823:intron | 10.0% |
| !! | AAAATTATCACATTTGTATA+TGG | + | chr6.3:19497474-19497493 | None:intergenic | 15.0% |
| !! | ATCAATCAATTTATTATCTT+AGG | - | chr6.3:19496632-19496651 | MS.gene49823:intron | 15.0% |
| !! | GAAATTATTTATGATATTAG+AGG | + | chr6.3:19497128-19497147 | None:intergenic | 15.0% |
| !! | TAAACTATATATATGTATCA+TGG | + | chr6.3:19498791-19498810 | None:intergenic | 15.0% |
| !! | TGATACATATATATAGTTTA+TGG | - | chr6.3:19498791-19498810 | MS.gene49823:intron | 15.0% |
| !!! | ATAATTAAGAACATTACTTT+TGG | + | chr6.3:19497339-19497358 | None:intergenic | 15.0% |
| !!! | ATTTCCATTAAAATTTTATC+GGG | + | chr6.3:19499075-19499094 | None:intergenic | 15.0% |
| !!! | TATATTTTAGAAATTGAGTA+GGG | - | chr6.3:19496930-19496949 | MS.gene49823:CDS | 15.0% |
| !!! | TCTCTATTTTGAATTTTTTT+AGG | - | chr6.3:19499131-19499150 | MS.gene49823:CDS | 15.0% |
| !! | AAAGAAGAAAATGAAAGTTA+TGG | - | chr6.3:19499285-19499304 | MS.gene49823:CDS | 20.0% |
| !! | ATATACACTAGAAAGATAAA+AGG | + | chr6.3:19496915-19496934 | None:intergenic | 20.0% |
| !! | ATTAAATTCATCTCAATTCA+TGG | - | chr6.3:19497786-19497805 | MS.gene49823:CDS | 20.0% |
| !! | ATTGGTTGAATAAATAGATA+AGG | - | chr6.3:19497154-19497173 | MS.gene49823:intron | 20.0% |
| !! | GAATTGAGATGAATTTAATT+TGG | + | chr6.3:19497785-19497804 | None:intergenic | 20.0% |
| !! | TATCTATTTATTCAACCAAT+AGG | + | chr6.3:19497154-19497173 | None:intergenic | 20.0% |
| !! | TCTACTTGTTCTTTATTATT+GGG | + | chr6.3:19498442-19498461 | None:intergenic | 20.0% |
| !! | TGAGTTAAATAATTATAGCA+TGG | - | chr6.3:19498876-19498895 | MS.gene49823:intron | 20.0% |
| !! | TTAAATTCATCTCAATTCAT+GGG | - | chr6.3:19497787-19497806 | MS.gene49823:CDS | 20.0% |
| !! | TTCTACTTGTTCTTTATTAT+TGG | + | chr6.3:19498443-19498462 | None:intergenic | 20.0% |
| !! | TTGTAACACTAACATATAAT+TGG | + | chr6.3:19496507-19496526 | None:intergenic | 20.0% |
| !! | TTTATATTACGGTAAAATGT+AGG | - | chr6.3:19497898-19497917 | MS.gene49823:CDS | 20.0% |
| !!! | AAAAATAAAGTATTGCTTAC+TGG | + | chr6.3:19498742-19498761 | None:intergenic | 20.0% |
| !!! | AAAATAAAGTATTGCTTACT+GGG | + | chr6.3:19498741-19498760 | None:intergenic | 20.0% |
| !!! | ATTATTTAACTCACTTTTAG+TGG | + | chr6.3:19498869-19498888 | None:intergenic | 20.0% |
| !!! | GTATATTTTAGAAATTGAGT+AGG | - | chr6.3:19496929-19496948 | MS.gene49823:CDS | 20.0% |
| !!! | TAATCCCGATAAAATTTTAA+TGG | - | chr6.3:19499068-19499087 | MS.gene49823:intron | 20.0% |
| !!! | TGAAGACTTATGATTTTATA+GGG | + | chr6.3:19499044-19499063 | None:intergenic | 20.0% |
| !!! | TTATTTAACTCACTTTTAGT+GGG | + | chr6.3:19498868-19498887 | None:intergenic | 20.0% |
| !!! | TTGAAGACTTATGATTTTAT+AGG | + | chr6.3:19499045-19499064 | None:intergenic | 20.0% |
| !!! | TTTGAAATTGAGTGTTTAAT+TGG | - | chr6.3:19496440-19496459 | MS.gene49823:intron | 20.0% |
| ! | AAGAAAATGAAAGTTATGGA+TGG | - | chr6.3:19499289-19499308 | MS.gene49823:CDS | 25.0% |
| ! | AATGTTCATGTAACATGATA+GGG | - | chr6.3:19498842-19498861 | MS.gene49823:intron | 25.0% |
| ! | AATTTCGAATCAATATCAGA+CGG | + | chr6.3:19498177-19498196 | None:intergenic | 25.0% |
| ! | ATAAATAATTTCCCTCCTAT+TGG | - | chr6.3:19497136-19497155 | MS.gene49823:intron | 25.0% |
| ! | ATCCCTACAAAAAAATTGTA+AGG | - | chr6.3:19496962-19496981 | MS.gene49823:CDS | 25.0% |
| ! | ATGATTTCAAATATTGCAGA+TGG | - | chr6.3:19499246-19499265 | MS.gene49823:CDS | 25.0% |
| ! | ATTATTCCCAATAATAAGAC+AGG | + | chr6.3:19498035-19498054 | None:intergenic | 25.0% |
| ! | TAATGTTCATGTAACATGAT+AGG | - | chr6.3:19498841-19498860 | MS.gene49823:intron | 25.0% |
| ! | TACAAACTACAGTATTATGA+AGG | + | chr6.3:19499104-19499123 | None:intergenic | 25.0% |
| ! | TATTTATTCAACCAATAGGA+GGG | + | chr6.3:19497150-19497169 | None:intergenic | 25.0% |
| ! | TCCTTAAAAAATGTCTTTGA+TGG | - | chr6.3:19499174-19499193 | MS.gene49823:CDS | 25.0% |
| ! | TTTGAATACATACATTGAGA+TGG | + | chr6.3:19497747-19497766 | None:intergenic | 25.0% |
| !! | AAAAAGTTGGTTATGTGAAA+AGG | - | chr6.3:19496225-19496244 | MS.gene49823:CDS | 25.0% |
| !! | AAAAGTTGGTTATGTGAAAA+GGG | - | chr6.3:19496226-19496245 | MS.gene49823:CDS | 25.0% |
| !! | AAATTTTTGTGTCATGTCTT+TGG | - | chr6.3:19496525-19496544 | MS.gene49823:intron | 25.0% |
| !! | TAAAGTCTAAAATGCAAAGT+TGG | + | chr6.3:19498271-19498290 | None:intergenic | 25.0% |
| !!! | ATCTAACTTTCTTGTTGTTT+GGG | + | chr6.3:19498228-19498247 | None:intergenic | 25.0% |
| !!! | ATGTGAATGTGGATTTTTTA+AGG | - | chr6.3:19496582-19496601 | MS.gene49823:intron | 25.0% |
| !!! | ATTTTTTTCCTACCTTCAAA+AGG | - | chr6.3:19497600-19497619 | MS.gene49823:intron | 25.0% |
| !!! | CACCTTACAATTTTTTTGTA+GGG | + | chr6.3:19496967-19496986 | None:intergenic | 25.0% |
| !!! | TCACCTTACAATTTTTTTGT+AGG | + | chr6.3:19496968-19496987 | None:intergenic | 25.0% |
| !!! | TCCATCAAAGACATTTTTTA+AGG | + | chr6.3:19499178-19499197 | None:intergenic | 25.0% |
| !!! | TGGACATGAATTTTAATTCA+TGG | + | chr6.3:19498251-19498270 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTTAACCAT+CGG | + | chr6.3:19497320-19497339 | None:intergenic | 25.0% |
| AAATGGAAACTAGAGAAAGA+AGG | + | chr6.3:19496845-19496864 | None:intergenic | 30.0% | |
| AACAAATTGTGAGAAACATC+AGG | + | chr6.3:19497717-19497736 | None:intergenic | 30.0% | |
| AATGGATGGGATTGAATATT+TGG | - | chr6.3:19499344-19499363 | MS.gene49823:CDS | 30.0% | |
| ATGGATGGGATTGAATATTT+GGG | - | chr6.3:19499345-19499364 | MS.gene49823:CDS | 30.0% | |
| ATGTCTGACTAAATAGAAAG+TGG | + | chr6.3:19498407-19498426 | None:intergenic | 30.0% | |
| ATTAATTCTACGCAATTCGA+TGG | - | chr6.3:19497197-19497216 | MS.gene49823:intron | 30.0% | |
| CTATTTATTCAACCAATAGG+AGG | + | chr6.3:19497151-19497170 | None:intergenic | 30.0% | |
| CTCGAAAATGTGTTTATAAG+AGG | + | chr6.3:19497001-19497020 | None:intergenic | 30.0% | |
| GAAATTATTTGTCTCATGCA+AGG | - | chr6.3:19496319-19496338 | MS.gene49823:intron | 30.0% | |
| GCACATTAAGTCATATGATT+GGG | - | chr6.3:19497686-19497705 | MS.gene49823:intron | 30.0% | |
| GTTAGACATGTTGAAAAAGT+TGG | - | chr6.3:19496212-19496231 | MS.gene49823:CDS | 30.0% | |
| TATAGGGAAGTCTCTATAAT+TGG | + | chr6.3:19499375-19499394 | None:intergenic | 30.0% | |
| TATATCCTTAGCAATTGCAT+TGG | + | chr6.3:19497536-19497555 | None:intergenic | 30.0% | |
| TCATGCAAGGAAACATTTAA+GGG | - | chr6.3:19496332-19496351 | MS.gene49823:intron | 30.0% | |
| TGCACATTAAGTCATATGAT+TGG | - | chr6.3:19497685-19497704 | MS.gene49823:intron | 30.0% | |
| TGTCTGACTAAATAGAAAGT+GGG | + | chr6.3:19498406-19498425 | None:intergenic | 30.0% | |
| TTAACCTTGCTACTATGATA+AGG | + | chr6.3:19496272-19496291 | None:intergenic | 30.0% | |
| TTAGTTAGATTATCCACCAT+TGG | + | chr6.3:19497096-19497115 | None:intergenic | 30.0% | |
| ! | CAAACGAAATTTAGAACTGT+TGG | - | chr6.3:19498009-19498028 | MS.gene49823:intron | 30.0% |
| ! | CATTTTCAAAGAGAATCCAA+GGG | - | chr6.3:19497436-19497455 | MS.gene49823:intron | 30.0% |
| ! | CGCTGCAAACTTTTATATTA+CGG | - | chr6.3:19497887-19497906 | MS.gene49823:CDS | 30.0% |
| ! | TAGCTTTTGCAATTCATCAA+GGG | - | chr6.3:19496711-19496730 | MS.gene49823:intron | 30.0% |
| ! | TGAAGTGCTTTATTAGACAT+TGG | + | chr6.3:19496299-19496318 | None:intergenic | 30.0% |
| ! | TTCTCTTTGAAAATGCTTTC+AGG | + | chr6.3:19497431-19497450 | None:intergenic | 30.0% |
| !! | CATAGTTTGTGAACATTTTG+TGG | + | chr6.3:19496377-19496396 | None:intergenic | 30.0% |
| !! | GATCTAACTTTCTTGTTGTT+TGG | + | chr6.3:19498229-19498248 | None:intergenic | 30.0% |
| !! | TTAGCTTTTGCAATTCATCA+AGG | - | chr6.3:19496710-19496729 | MS.gene49823:intron | 30.0% |
| !!! | TGGTTTGTTTTTTAACCATC+GGG | + | chr6.3:19497319-19497338 | None:intergenic | 30.0% |
| AAAGGGTCATTGTCAAAAAG+AGG | - | chr6.3:19496243-19496262 | MS.gene49823:CDS | 35.0% | |
| AGGTGTATCTATGAAAATGG+AGG | - | chr6.3:19496160-19496179 | MS.gene49823:CDS | 35.0% | |
| CACAAACTATGTCACATTCT+TGG | - | chr6.3:19496386-19496405 | MS.gene49823:intron | 35.0% | |
| CAGAAAACTCTCAAATGGAT+GGG | - | chr6.3:19499331-19499350 | MS.gene49823:CDS | 35.0% | |
| CTCATGCAAGGAAACATTTA+AGG | - | chr6.3:19496331-19496350 | MS.gene49823:intron | 35.0% | |
| GAAACCTTATCATAGTAGCA+AGG | - | chr6.3:19496265-19496284 | MS.gene49823:intron | 35.0% | |
| GGTGTATCTATGAAAATGGA+GGG | - | chr6.3:19496161-19496180 | MS.gene49823:CDS | 35.0% | |
| GTCTGACTAAATAGAAAGTG+GGG | + | chr6.3:19498405-19498424 | None:intergenic | 35.0% | |
| GTGTGATTCCATAACAACAA+TGG | - | chr6.3:19498358-19498377 | MS.gene49823:intron | 35.0% | |
| GTTTGTCCTTTCACATTGTT+GGG | - | chr6.3:19496670-19496689 | MS.gene49823:intron | 35.0% | |
| TACTGAAAACAGTCATTCCT+GGG | + | chr6.3:19497647-19497666 | None:intergenic | 35.0% | |
| TCAGTGTTGTATCCAAAAAC+TGG | - | chr6.3:19498591-19498610 | MS.gene49823:intron | 35.0% | |
| TCATCTCAATTCATGGGATA+AGG | - | chr6.3:19497793-19497812 | MS.gene49823:CDS | 35.0% | |
| TGTTTGTCCTTTCACATTGT+TGG | - | chr6.3:19496669-19496688 | MS.gene49823:intron | 35.0% | |
| TTACTGAAAACAGTCATTCC+TGG | + | chr6.3:19497648-19497667 | None:intergenic | 35.0% | |
| TTACTTAGTCCAACATCTTC+TGG | + | chr6.3:19497389-19497408 | None:intergenic | 35.0% | |
| ! | ATGGGTTAAAATTACGGTAG+CGG | - | chr6.3:19497861-19497880 | MS.gene49823:CDS | 35.0% |
| ! | ATGTGTGTCCATTGTTGTTA+TGG | + | chr6.3:19498369-19498388 | None:intergenic | 35.0% |
| ! | GATTCTCGAAATTTAGAACG+TGG | - | chr6.3:19498150-19498169 | MS.gene49823:intron | 35.0% |
| ! | GCATTTTCAAAGAGAATCCA+AGG | - | chr6.3:19497435-19497454 | MS.gene49823:intron | 35.0% |
| ! | GTTTTCAGTAAGCTTCTGTT+GGG | - | chr6.3:19497657-19497676 | MS.gene49823:intron | 35.0% |
| ! | TGGAGGTGTATCTATGAAAA+TGG | - | chr6.3:19496157-19496176 | MS.gene49823:CDS | 35.0% |
| ! | TGTGAACATTTTGTGGTGAA+GGG | + | chr6.3:19496370-19496389 | None:intergenic | 35.0% |
| ! | TGTTGGCCTGTCTTATTATT+GGG | - | chr6.3:19498026-19498045 | MS.gene49823:intron | 35.0% |
| ! | TGTTTTCAGTAAGCTTCTGT+TGG | - | chr6.3:19497656-19497675 | MS.gene49823:intron | 35.0% |
| ! | TTGCCCATGGGTTAAAATTA+CGG | - | chr6.3:19497855-19497874 | MS.gene49823:CDS | 35.0% |
| ! | TTGTGAACATTTTGTGGTGA+AGG | + | chr6.3:19496371-19496390 | None:intergenic | 35.0% |
| !! | CTACCGTAATTTTAACCCAT+GGG | + | chr6.3:19497861-19497880 | None:intergenic | 35.0% |
| !! | GAATTACTCCTTTTGAAGGT+AGG | + | chr6.3:19497611-19497630 | None:intergenic | 35.0% |
| !! | GACGATCAAGTTCTGAATTT+CGG | + | chr6.3:19498297-19498316 | None:intergenic | 35.0% |
| !! | TATGATATTAGAGGTGTCCA+CGG | + | chr6.3:19497119-19497138 | None:intergenic | 35.0% |
| !! | TTGTGTCATGTCTTTGGAAT+TGG | - | chr6.3:19496531-19496550 | MS.gene49823:intron | 35.0% |
| !!! | ACATGCTATTTTTTGCAGTG+AGG | - | chr6.3:19498520-19498539 | MS.gene49823:intron | 35.0% |
| AACATGAAGCCAGAAGATGT+TGG | - | chr6.3:19497377-19497396 | MS.gene49823:intron | 40.0% | |
| AAGAACAGCACATGGAGTTA+TGG | + | chr6.3:19498640-19498659 | None:intergenic | 40.0% | |
| AATGTAGAGCGTGATTTGAG+TGG | - | chr6.3:19497069-19497088 | MS.gene49823:intron | 40.0% | |
| ACAATCTCTGCCATCATCTT+TGG | + | chr6.3:19498685-19498704 | None:intergenic | 40.0% | |
| AGGGAAGTCTCTATAATTGG+AGG | + | chr6.3:19499372-19499391 | None:intergenic | 40.0% | |
| ATGACATCAAGAACAGCACA+TGG | + | chr6.3:19498648-19498667 | None:intergenic | 40.0% | |
| ATGGTTGTATATGTGACCCT+TGG | + | chr6.3:19497455-19497474 | None:intergenic | 40.0% | |
| CAATGGACACACATCCTATT+TGG | - | chr6.3:19498375-19498394 | MS.gene49823:intron | 40.0% | |
| CATCTTCCCAACAATGTGAA+AGG | + | chr6.3:19496679-19496698 | None:intergenic | 40.0% | |
| CCAGAAAACTCTCAAATGGA+TGG | - | chr6.3:19499330-19499349 | MS.gene49823:CDS | 40.0% | |
| CCTCCTTATTCCAAAGATGA+TGG | - | chr6.3:19498672-19498691 | MS.gene49823:intron | 40.0% | |
| GAGTTATGGCTGTGAATTCA+TGG | + | chr6.3:19498626-19498645 | None:intergenic | 40.0% | |
| GATGCCAGAAAACTCTCAAA+TGG | - | chr6.3:19499326-19499345 | MS.gene49823:CDS | 40.0% | |
| GGCTGAACTCTGAATTATCA+TGG | - | chr6.3:19497277-19497296 | MS.gene49823:intron | 40.0% | |
| GTATCTATGAAAATGGAGGG+TGG | - | chr6.3:19496164-19496183 | MS.gene49823:CDS | 40.0% | |
| GTGGATAATCTAACTAACCG+TGG | - | chr6.3:19497099-19497118 | MS.gene49823:intron | 40.0% | |
| GTGTTGTATCCAAAAACTGG+AGG | - | chr6.3:19498594-19498613 | MS.gene49823:intron | 40.0% | |
| GTTCACCAATGCAATTGCTA+AGG | - | chr6.3:19497528-19497547 | MS.gene49823:intron | 40.0% | |
| TACTGGGAAAAGCAGTGTAA+AGG | + | chr6.3:19498725-19498744 | None:intergenic | 40.0% | |
| TCTTTGTAACACTTGCCCAT+GGG | - | chr6.3:19497843-19497862 | MS.gene49823:CDS | 40.0% | |
| TGCATGTTGTGATGTGAATG+TGG | - | chr6.3:19496571-19496590 | MS.gene49823:intron | 40.0% | |
| TTCTTTGTAACACTTGCCCA+TGG | - | chr6.3:19497842-19497861 | MS.gene49823:CDS | 40.0% | |
| ! | AGGGGAATTACTCCTTTTGA+AGG | + | chr6.3:19497615-19497634 | None:intergenic | 40.0% |
| ! | CCATCCATTTGAGAGTTTTC+TGG | + | chr6.3:19499333-19499352 | None:intergenic | 40.0% |
| ! | CTGTTGGCCTGTCTTATTAT+TGG | - | chr6.3:19498025-19498044 | MS.gene49823:intron | 40.0% |
| ! | TACAACACTGAAGTGTCACA+TGG | + | chr6.3:19498582-19498601 | None:intergenic | 40.0% |
| ! | TGGATATTGCCTCCAGTTTT+TGG | + | chr6.3:19498606-19498625 | None:intergenic | 40.0% |
| ! | TGTGCTGTTCTTGATGTCAT+TGG | - | chr6.3:19498648-19498667 | MS.gene49823:intron | 40.0% |
| ! | TTTTAACCATCGGGCTTCAA+AGG | + | chr6.3:19497310-19497329 | None:intergenic | 40.0% |
| !! | CCATCATCTTTGGAATAAGG+AGG | + | chr6.3:19498675-19498694 | None:intergenic | 40.0% |
| !! | CCTCTAAAATTGTTGTACCG+CGG | - | chr6.3:19497971-19497990 | MS.gene49823:intron | 40.0% |
| !! | CTGCCATCATCTTTGGAATA+AGG | + | chr6.3:19498678-19498697 | None:intergenic | 40.0% |
| !! | GCTACCGTAATTTTAACCCA+TGG | + | chr6.3:19497862-19497881 | None:intergenic | 40.0% |
| !! | TCTTCTGGCTTCATGTTATC+TGG | + | chr6.3:19497374-19497393 | None:intergenic | 40.0% |
| !!! | GCTATTTTTTGCAGTGAGGT+TGG | - | chr6.3:19498524-19498543 | MS.gene49823:intron | 40.0% |
| AACCTCAAGTGTGGTTGCAT+TGG | + | chr6.3:19497933-19497952 | None:intergenic | 45.0% | |
| ACGCTCTACATTAAGCGTGA+GGG | + | chr6.3:19497061-19497080 | None:intergenic | 45.0% | |
| ATTCCTGGGTGGTTATGAAG+GGG | + | chr6.3:19497633-19497652 | None:intergenic | 45.0% | |
| CATTCCTGGGTGGTTATGAA+GGG | + | chr6.3:19497634-19497653 | None:intergenic | 45.0% | |
| TCATTCCTGGGTGGTTATGA+AGG | + | chr6.3:19497635-19497654 | None:intergenic | 45.0% | |
| TGAAAACAGTCATTCCTGGG+TGG | + | chr6.3:19497644-19497663 | None:intergenic | 45.0% | |
| TGATTTGAGTGGTCCAATGG+TGG | - | chr6.3:19497080-19497099 | MS.gene49823:intron | 45.0% | |
| TGGACACACATCCTATTTGG+TGG | - | chr6.3:19498378-19498397 | MS.gene49823:intron | 45.0% | |
| TTCGTTTGCAACTGCAGTTG+TGG | + | chr6.3:19497997-19498016 | None:intergenic | 45.0% | |
| ! | CCGCGGTACAACAATTTTAG+AGG | + | chr6.3:19497974-19497993 | None:intergenic | 45.0% |
| !! | TTCTTTCCTTTGAAGCCCGA+TGG | - | chr6.3:19497301-19497320 | MS.gene49823:intron | 45.0% |
| !!! | ATGTTATTTTAATTTTTAAA+TGG | + | chr6.3:19496862-19496881 | None:intergenic | 5.0% |
| ATTCCCCTTCATAACCACCC+AGG | - | chr6.3:19497627-19497646 | MS.gene49823:intron | 50.0% | |
| CACGCTCTACATTAAGCGTG+AGG | + | chr6.3:19497062-19497081 | None:intergenic | 50.0% | |
| CGACATTGCAACCTCAAGTG+TGG | + | chr6.3:19497942-19497961 | None:intergenic | 50.0% | |
| CGCTCTACATTAAGCGTGAG+GGG | + | chr6.3:19497060-19497079 | None:intergenic | 50.0% | |
| GAAAGTGGGGTCCACCAAAT+AGG | + | chr6.3:19498392-19498411 | None:intergenic | 50.0% | |
| GACCAATGCAACCACACTTG+AGG | - | chr6.3:19497928-19497947 | MS.gene49823:intron | 50.0% | |
| GCGTGATTTGAGTGGTCCAA+TGG | - | chr6.3:19497077-19497096 | MS.gene49823:intron | 50.0% | |
| TGTGGTGAAGGGACAGTGTC+AGG | + | chr6.3:19496359-19496378 | None:intergenic | 55.0% | |
| TGCAACTGCAGTTGTGGCCG+CGG | + | chr6.3:19497991-19498010 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 19496143 | 19499395 | 19496143 | ID=MS.gene49823 |
| chr6.3 | mRNA | 19496143 | 19499395 | 19496143 | ID=MS.gene49823.t1;Parent=MS.gene49823 |
| chr6.3 | exon | 19499131 | 19499395 | 19499131 | ID=MS.gene49823.t1.exon1;Parent=MS.gene49823.t1 |
| chr6.3 | CDS | 19499131 | 19499395 | 19499131 | ID=cds.MS.gene49823.t1;Parent=MS.gene49823.t1 |
| chr6.3 | exon | 19498042 | 19498163 | 19498042 | ID=MS.gene49823.t1.exon2;Parent=MS.gene49823.t1 |
| chr6.3 | CDS | 19498042 | 19498163 | 19498042 | ID=cds.MS.gene49823.t1;Parent=MS.gene49823.t1 |
| chr6.3 | exon | 19497785 | 19497944 | 19497785 | ID=MS.gene49823.t1.exon3;Parent=MS.gene49823.t1 |
| chr6.3 | CDS | 19497785 | 19497944 | 19497785 | ID=cds.MS.gene49823.t1;Parent=MS.gene49823.t1 |
| chr6.3 | exon | 19496797 | 19497000 | 19496797 | ID=MS.gene49823.t1.exon4;Parent=MS.gene49823.t1 |
| chr6.3 | CDS | 19496797 | 19497000 | 19496797 | ID=cds.MS.gene49823.t1;Parent=MS.gene49823.t1 |
| chr6.3 | exon | 19496143 | 19496273 | 19496143 | ID=MS.gene49823.t1.exon5;Parent=MS.gene49823.t1 |
| chr6.3 | CDS | 19496143 | 19496273 | 19496143 | ID=cds.MS.gene49823.t1;Parent=MS.gene49823.t1 |
| Gene Sequence |
| Protein sequence |
