AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053421


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053421.t1 MTR_1g044210 95.784 759 32 0 1 759 1 759 0.0 1443
MS.gene053421.t1 MTR_1g073840 71.560 763 209 7 1 760 1 758 0.0 1095
MS.gene053421.t1 MTR_7g116330 53.877 748 330 8 15 757 21 758 0.0 818
MS.gene053421.t1 MTR_1g079790 53.146 747 333 8 19 757 18 755 0.0 781
MS.gene053421.t1 MTR_1g079790 53.886 579 255 7 19 589 18 592 0.0 607
MS.gene053421.t1 MTR_4g031150 37.787 741 439 14 28 758 54 782 2.81e-155 471
MS.gene053421.t1 MTR_7g109150 39.410 576 322 10 28 589 5 567 6.65e-116 364
MS.gene053421.t1 MTR_4g134880 64.865 74 24 2 689 760 1 74 3.24e-23 94.4
MS.gene053421.t1 MTR_8g080770 31.579 133 81 3 633 757 728 858 2.74e-13 74.3
MS.gene053421.t1 MTR_8g080770 31.579 133 81 3 633 757 837 967 2.78e-13 74.3
MS.gene053421.t1 MTR_3g085130 29.851 134 83 3 633 758 692 822 4.57e-12 70.1
MS.gene053421.t1 MTR_3g085130 29.333 150 94 4 619 760 889 1034 6.21e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053421.t1 AT3G23150 54.003 787 311 15 1 757 1 766 0.0 786
MS.gene053421.t1 AT3G04580 51.743 746 345 10 23 758 22 762 0.0 739
MS.gene053421.t1 AT3G04580 51.743 746 345 10 23 758 22 762 0.0 739
MS.gene053421.t1 AT3G23150 56.106 606 226 11 1 583 1 589 0.0 624
MS.gene053421.t1 AT1G04310 48.243 626 287 10 10 613 12 622 4.57e-180 530
MS.gene053421.t1 AT1G04310 48.243 626 287 10 10 613 12 622 4.57e-180 530
MS.gene053421.t1 AT1G66340 37.685 743 435 15 28 758 4 730 5.97e-155 468
MS.gene053421.t1 AT2G40940 41.416 466 267 5 42 503 17 480 2.28e-110 348
MS.gene053421.t1 AT1G27320 23.230 452 297 13 342 757 428 865 1.72e-13 75.1
MS.gene053421.t1 AT5G35750 33.835 133 64 3 633 744 1031 1160 3.94e-12 70.5

Find 183 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATGCATATTGGGTTTAA+TGG 0.188176 1.4:+28273193 MS.gene053421:CDS
GTTAAACTGTCGGAAACTTT+AGG 0.198346 1.4:+28271072 MS.gene053421:CDS
CCCCTTTGAAGTTATTCTTT+TGG 0.208877 1.4:+28273048 MS.gene053421:CDS
ATGGCTTTATGCAAGGGTTT+TGG 0.236524 1.4:+28271864 MS.gene053421:CDS
TTGTTTAATAGCTGGACTTA+TGG 0.240419 1.4:+28270778 MS.gene053421:CDS
ATGAAATAAAGAAGCTCAAT+AGG 0.260762 1.4:-28270679 None:intergenic
GCAACTTATGAGAGAGAAAT+TGG 0.272205 1.4:+28271509 MS.gene053421:CDS
TAACAATACATCCTAGTTTC+TGG 0.278898 1.4:-28272970 None:intergenic
TCTGAACTCTCCCCTGGTTC+GGG 0.291012 1.4:-28272857 None:intergenic
TTAAACTGTCGGAAACTTTA+GGG 0.291922 1.4:+28271073 MS.gene053421:CDS
ATTGCTTTCATTGTACTTTG+TGG 0.294523 1.4:+28270745 MS.gene053421:CDS
CTTAACTTGCCTGATTTAGA+TGG 0.294640 1.4:+28273073 MS.gene053421:CDS
GTTACTTCAGAGAGGCTTGC+AGG 0.301780 1.4:+28272155 MS.gene053421:CDS
GATTCTTGTGTTTCAAGTTT+TGG 0.305051 1.4:+28272004 MS.gene053421:CDS
CTCTGAACTCTCCCCTGGTT+CGG 0.307952 1.4:-28272858 None:intergenic
GCCTATCGCTGTTGCTTTAA+CGG 0.315525 1.4:+28273141 MS.gene053421:CDS
CCTTTGGAGATGAAATGTTT+TGG 0.321337 1.4:+28271798 MS.gene053421:CDS
CTGTTACGCGATACTTGTTT+TGG 0.339387 1.4:+28271374 MS.gene053421:CDS
CAGCATGGCCAACAAGATTA+AGG 0.340276 1.4:-28273018 None:intergenic
GTGCAAACATTCCATTCAAA+TGG 0.340458 1.4:+28270707 MS.gene053421:CDS
CAAAACAAGTATCGCGTAAC+AGG 0.352897 1.4:-28271373 None:intergenic
AGCTTGCATCGCCAAGTCTA+TGG 0.355095 1.4:+28271845 MS.gene053421:CDS
ATTGTTACATCTGTTTCTTC+CGG 0.360494 1.4:+28272986 MS.gene053421:CDS
AGGCCAATGCATTCAGTTAT+GGG 0.362686 1.4:+28271630 MS.gene053421:CDS
TCTTTGCCTAACTATATTAT+CGG 0.368544 1.4:+28271909 MS.gene053421:CDS
GCGAATCCTTGCAACAGAAT+TGG 0.368969 1.4:-28273229 None:intergenic
ATGTATAAAGCAACAGCATC+TGG 0.373228 1.4:+28270499 MS.gene053421:CDS
TTCGAATGCCTTAATCTTGT+TGG 0.377583 1.4:+28273010 MS.gene053421:CDS
TATTAAAGTTGTTGCTGATC+AGG 0.379034 1.4:+28271446 MS.gene053421:CDS
GATTTAAGGTTGAGGTTGAT+AGG 0.383654 1.4:+28271886 MS.gene053421:CDS
CTTGCAACAGAATTGGCTTT+CGG 0.388691 1.4:-28273222 None:intergenic
GGTGTATCTGCAACTGCTAA+TGG 0.389182 1.4:+28270547 MS.gene053421:CDS
CAAGATCTAGCCTCTTCATT+AGG 0.389823 1.4:-28271402 None:intergenic
GTCATCGTCACAGTTGCATT+TGG 0.391968 1.4:-28270575 None:intergenic
TGAGGAAAGCCTCTAGCATT+TGG 0.394008 1.4:-28272779 None:intergenic
CTTAATCTTGTTGGCCATGC+TGG 0.394439 1.4:+28273019 MS.gene053421:CDS
TGGAGGTGGAAGATTTCCTT+TGG 0.397483 1.4:+28271782 MS.gene053421:CDS
AACTCATGACCCTTGCTCTT+CGG 0.399844 1.4:+28272801 MS.gene053421:CDS
GGAAGTTCAAAAGCCGTAAC+TGG 0.402042 1.4:+28273119 MS.gene053421:CDS
CATCTAAATCAGGCAAGTTA+AGG 0.412834 1.4:-28273072 None:intergenic
AAGGCCAATGCATTCAGTTA+TGG 0.414233 1.4:+28271629 MS.gene053421:CDS
CTTGAAAGTCCTCACTGCAT+TGG 0.415305 1.4:+28270837 MS.gene053421:CDS
AAGCGAAAGGCGAGGGAGCT+TGG 0.417170 1.4:+28270937 MS.gene053421:CDS
ATAGGACCTAATTTCCCTTC+AGG 0.424148 1.4:-28273270 None:intergenic
CAGAGGTCTGCAAGTCTTGT+TGG 0.425682 1.4:+28272904 MS.gene053421:CDS
TCCAAAAGAATAACTTCAAA+GGG 0.428364 1.4:-28273049 None:intergenic
GATCAAAGTGATGAGGGTTA+TGG 0.428611 1.4:-28270875 None:intergenic
ACTTCAAATCCATCTAAATC+AGG 0.429557 1.4:-28273082 None:intergenic
AAGATTAAGGCATTCGAATC+CGG 0.430168 1.4:-28273005 None:intergenic
TGACACATTTGTTTAATAGC+TGG 0.431512 1.4:+28270770 MS.gene053421:CDS
AGGGAGCTTGGAATTGAGTA+TGG 0.435625 1.4:+28270949 MS.gene053421:CDS
GAAGGATGTGTACGAGTGAC+CGG 0.443598 1.4:+28272177 MS.gene053421:CDS
AAGCTCAGAAGAAGAATTGC+GGG 0.444376 1.4:+28273165 MS.gene053421:CDS
CCCTATGCTTCTTAAAGTAA+AGG 0.446192 1.4:+28270897 MS.gene053421:CDS
GGCATTCGGATCGCAGCAAC+CGG 0.448019 1.4:-28271300 None:intergenic
ATGCTATGGACAATTCAGAT+AGG 0.455663 1.4:+28271754 MS.gene053421:CDS
CCCTTGACTCTTACAACATC+CGG 0.458403 1.4:-28271201 None:intergenic
TTCTATACCGATCACTGATC+CGG 0.461024 1.4:+28271182 MS.gene053421:CDS
TGAAATAAAGAAGCTCAATA+GGG 0.466212 1.4:-28270678 None:intergenic
CTGCTTGCTGCTGCGAGTAG+TGG 0.466733 1.4:+28271258 MS.gene053421:CDS
CTAATGAAGAGGCTAGATCT+TGG 0.468226 1.4:+28271403 MS.gene053421:CDS
TTGAAGTTACCGCAAGGATC+CGG 0.468641 1.4:+28273098 MS.gene053421:CDS
AACCTCACTCATGAATTGAA+TGG 0.471461 1.4:+28271144 MS.gene053421:CDS
GCGAAATCGAGCATTGCAAC+AGG 0.472193 1.4:+28271536 MS.gene053421:CDS
CAACACTAAGCATTGGCATT+CGG 0.473530 1.4:-28271314 None:intergenic
TACGAGTGACCGGGCATTCG+AGG 0.475000 1.4:+28272187 MS.gene053421:CDS
TCAGATAGGGACGGTGGAGG+TGG 0.475127 1.4:+28271768 MS.gene053421:CDS
TTTCAGAAAGTCATGAGTAA+TGG 0.476424 1.4:+28271600 MS.gene053421:CDS
GAAAGTCATGAGTAATGGAA+TGG 0.480686 1.4:+28271605 MS.gene053421:CDS
TGCAAACATTCCATTCAAAT+GGG 0.481437 1.4:+28270708 MS.gene053421:CDS
CAGAAATTTCTCCAGAAACT+AGG 0.482342 1.4:+28272959 MS.gene053421:CDS
CTTAGTGTTGGCGATTTCAA+AGG 0.483799 1.4:+28271327 MS.gene053421:CDS
TGTAAGAGTCAAGGGAGATA+AGG 0.484906 1.4:+28271209 MS.gene053421:CDS
GAGCATTGCAACAGGAGAAA+AGG 0.488985 1.4:+28271544 MS.gene053421:CDS
TCAAACTTTCCTCGAATGCC+CGG 0.492186 1.4:-28272196 None:intergenic
ACCTCACTCATGAATTGAAT+GGG 0.492396 1.4:+28271145 MS.gene053421:CDS
CAACAGCGATAGGCCAGTTA+CGG 0.493707 1.4:-28273132 None:intergenic
TTAGTGTTGGCGATTTCAAA+GGG 0.496178 1.4:+28271328 MS.gene053421:CDS
GCGGTAACCATCCCCGAACC+AGG 0.502417 1.4:+28272845 MS.gene053421:CDS
ATTCTAGAATGGCAGAAAGT+TGG 0.502478 1.4:+28270622 MS.gene053421:CDS
GTCCAAAAGAATAACTTCAA+AGG 0.504471 1.4:-28273050 None:intergenic
ATAATGAAACAGAATGAAGC+TGG 0.506215 1.4:+28270976 MS.gene053421:CDS
ACTTGATAGATGGTAACAAT+GGG 0.506406 1.4:+28271976 MS.gene053421:CDS
TAACAGGCCTCCGTTACCTC+AGG 0.507753 1.4:-28271357 None:intergenic
AGTGGAGTTTCTGTTGATGC+AGG 0.512394 1.4:+28271276 MS.gene053421:CDS
CAAGTCTATGGCTTTATGCA+AGG 0.514591 1.4:+28271857 MS.gene053421:CDS
CCTTTACTTTAAGAAGCATA+GGG 0.517469 1.4:-28270897 None:intergenic
TACTACCTTGGTTAAACTGT+CGG 0.524792 1.4:+28271062 MS.gene053421:CDS
GGAGAAAAGGAACGCTATGA+TGG 0.526316 1.4:+28271557 MS.gene053421:CDS
ACCTTTACTTTAAGAAGCAT+AGG 0.527347 1.4:-28270898 None:intergenic
AACTTGATAGATGGTAACAA+TGG 0.531282 1.4:+28271975 MS.gene053421:CDS
AAAGTCATGAGTAATGGAAT+GGG 0.532334 1.4:+28271606 MS.gene053421:CDS
CAGCATGATTTGAAACGTGT+GGG 0.533793 1.4:-28270803 None:intergenic
AGTTTCTGTTGATGCAGGAC+CGG 0.541642 1.4:+28271281 MS.gene053421:CDS
AAGTCTATGGCTTTATGCAA+GGG 0.542582 1.4:+28271858 MS.gene053421:CDS
GATGCCTAATGTTGATAAAA+CGG 0.545342 1.4:+28271116 MS.gene053421:CDS
ACTCTCCCCTGGTTCGGGGA+TGG 0.547088 1.4:-28272852 None:intergenic
TTGAACATGGATATGCAACT+TGG 0.548877 1.4:+28272051 MS.gene053421:CDS
GAAACTTATTGTGGATTCGA+TGG 0.549832 1.4:+28271695 MS.gene053421:CDS
GATCAAAATTCCTTGTTCAG+AGG 0.550379 1.4:+28272887 MS.gene053421:CDS
GATGACTCTGAACTCTCCCC+TGG 0.550748 1.4:-28272863 None:intergenic
TCGTCACCGATAATATAGTT+AGG 0.551741 1.4:-28271915 None:intergenic
TGTTGCTGATCAGGTAGCCG+TGG 0.554230 1.4:+28271455 MS.gene053421:CDS
AAATCGCCAACACTAAGCAT+TGG 0.554872 1.4:-28271321 None:intergenic
GAACTTGATGAATGATGCTA+TGG 0.555490 1.4:+28271740 MS.gene053421:CDS
CGAAAGCCAATTCTGTTGCA+AGG 0.555618 1.4:+28273223 MS.gene053421:CDS
TCCCATTCAATTCATGAGTG+AGG 0.557270 1.4:-28271146 None:intergenic
TTGCGATTCTTCTAGAATTG+CGG 0.559822 1.4:-28271490 None:intergenic
CGATTGAGAAGATTCTAGAA+TGG 0.560839 1.4:+28270611 MS.gene053421:CDS
AGAGTTCTTGCTGAAGCGAA+AGG 0.561096 1.4:+28270924 MS.gene053421:CDS
CCGGATGTTGTAAGAGTCAA+GGG 0.561701 1.4:+28271201 MS.gene053421:CDS
TGCTATGGACAATTCAGATA+GGG 0.564858 1.4:+28271755 MS.gene053421:CDS
TTATTGTGGATTCGATGGTA+AGG 0.567940 1.4:+28271700 MS.gene053421:CDS
TCTATTAACATTGTCGCTGT+CGG 0.568134 1.4:-28272927 None:intergenic
ATTCTGTTGCAAGGATTCGC+CGG 0.568420 1.4:+28273232 MS.gene053421:CDS
GCCGTTAAAGCAACAGCGAT+AGG 0.568669 1.4:-28273142 None:intergenic
CCAAAACATTTCATCTCCAA+AGG 0.569295 1.4:-28271798 None:intergenic
GAATGAACAGAAACTTATTG+TGG 0.569510 1.4:+28271686 MS.gene053421:CDS
CAGATACACCCAATAAGAGC+AGG 0.570029 1.4:-28270534 None:intergenic
ATATTATCGGTGACGAGAAG+AGG 0.570583 1.4:+28271922 MS.gene053421:CDS
ATGGTTAGGAACTTGATAGA+TGG 0.571670 1.4:+28271966 MS.gene053421:CDS
CGAATGCCAATGCTTAGTGT+TGG 0.574855 1.4:+28271315 MS.gene053421:CDS
CATATGCAAGAAGATAATCC+AGG 0.578098 1.4:+28272226 MS.gene053421:CDS
CTTGCATAAAGCCATAGACT+TGG 0.578350 1.4:-28271856 None:intergenic
TCCGGATGTTGTAAGAGTCA+AGG 0.578653 1.4:+28271200 MS.gene053421:CDS
TTTGGTACTTCCTAATGAAG+AGG 0.580067 1.4:+28271392 MS.gene053421:CDS
GAACGCTATGATGGCGAGTG+AGG 0.581349 1.4:+28271566 MS.gene053421:CDS
TGTTATTGGCAGTCAATGAA+AGG 0.581485 1.4:+28272740 MS.gene053421:intron
CTTGCTGAAGCGAAAGGCGA+GGG 0.583282 1.4:+28270930 MS.gene053421:CDS
CTTCAGAGAGGCTTGCAGGA+AGG 0.584384 1.4:+28272159 MS.gene053421:CDS
ACATCACCGTTAGACGAGCT+TGG 0.587602 1.4:-28272077 None:intergenic
CGGAATCTGGAAGTCGAGGA+AGG 0.587888 1.4:+28272027 MS.gene053421:CDS
AATTCAGATAGGGACGGTGG+AGG 0.588433 1.4:+28271765 MS.gene053421:CDS
CATAGGGATCAAAGTGATGA+GGG 0.588741 1.4:-28270881 None:intergenic
TCAGCATGATTTGAAACGTG+TGG 0.593806 1.4:-28270804 None:intergenic
AATCCCATAACTGAATGCAT+TGG 0.595120 1.4:-28271633 None:intergenic
AAGGATGTGTACGAGTGACC+GGG 0.595446 1.4:+28272178 MS.gene053421:CDS
GACTTGCAGACCTCTGAACA+AGG 0.597590 1.4:-28272897 None:intergenic
TATTATCGGTGACGAGAAGA+GGG 0.598459 1.4:+28271923 MS.gene053421:CDS
CAAGCTCAGAAGAAGAATTG+CGG 0.599403 1.4:+28273164 MS.gene053421:CDS
TTTGAACTTCCGGATCCTTG+CGG 0.601307 1.4:-28273107 None:intergenic
CAAAGGGGCATGCACCAGCA+TGG 0.602581 1.4:-28273033 None:intergenic
CGGTAACCATCCCCGAACCA+GGG 0.604626 1.4:+28272846 MS.gene053421:CDS
GTAGTTGAAACCGAAGAGCA+AGG 0.606603 1.4:-28272811 None:intergenic
AGAGCAAGGGTCATGAGTTG+AGG 0.607034 1.4:-28272797 None:intergenic
ACAACATCCGGATCAGTGAT+CGG 0.610257 1.4:-28271189 None:intergenic
AGTGTTGGCGATTTCAAAGG+GGG 0.610884 1.4:+28271330 MS.gene053421:CDS
GTTGCTGATCAGGTAGCCGT+GGG 0.610984 1.4:+28271456 MS.gene053421:CDS
TTGGCGGAATCTGGAAGTCG+AGG 0.612913 1.4:+28272023 MS.gene053421:CDS
CTGAACTCTCCCCTGGTTCG+GGG 0.615088 1.4:-28272856 None:intergenic
GCATAGGGATCAAAGTGATG+AGG 0.615167 1.4:-28270882 None:intergenic
TCTTGCTGAAGCGAAAGGCG+AGG 0.616326 1.4:+28270929 MS.gene053421:CDS
TAGTTGAAACCGAAGAGCAA+GGG 0.619553 1.4:-28272810 None:intergenic
GTGCATGTTAGATTTGACAT+AGG 0.621016 1.4:+28272098 MS.gene053421:CDS
GGGGACGCCTGAGGTAACGG+AGG 0.625733 1.4:+28271350 MS.gene053421:CDS
AGTCGAGGAAGGATTGAACA+TGG 0.630620 1.4:+28272038 MS.gene053421:CDS
TGGAGACCAAGCTCGTCTAA+CGG 0.635163 1.4:+28272071 MS.gene053421:CDS
TCACTCATGAATTGAATGGG+AGG 0.638853 1.4:+28271148 MS.gene053421:CDS
ACTTATGAGAGAGAAATTGG+AGG 0.641195 1.4:+28271512 MS.gene053421:CDS
GGTAACCATCCCCGAACCAG+GGG 0.647398 1.4:+28272847 MS.gene053421:CDS
GATTCGATGGTAAGGACAAG+CGG 0.650665 1.4:+28271708 MS.gene053421:CDS
GACAATTCAGATAGGGACGG+TGG 0.651579 1.4:+28271762 MS.gene053421:CDS
GTGACGATGACACGAGCTGG+TGG 0.655983 1.4:+28270587 MS.gene053421:CDS
ATGGATTTGAAGTTACCGCA+AGG 0.658657 1.4:+28273092 MS.gene053421:CDS
TCATGAGTAATGGAATGGGA+AGG 0.660080 1.4:+28271610 MS.gene053421:CDS
GATGGCGAGTGAGGCTAGAG+CGG 0.664178 1.4:+28271575 MS.gene053421:CDS
AGACCTCAGTTACTTCAGAG+AGG 0.666164 1.4:+28272147 MS.gene053421:CDS
TGTTCAGTACCAAATGCTAG+AGG 0.667794 1.4:+28272770 MS.gene053421:CDS
GGTTGCAGAACTGTGCTGTG+TGG 0.669623 1.4:+28271094 MS.gene053421:CDS
AGTTTCCGACAGTTTAACCA+AGG 0.671343 1.4:-28271067 None:intergenic
TTGATAGATGGTAACAATGG+GGG 0.671786 1.4:+28271978 MS.gene053421:CDS
ATGGACAATTCAGATAGGGA+CGG 0.674602 1.4:+28271759 MS.gene053421:CDS
ACTGTGACGATGACACGAGC+TGG 0.677647 1.4:+28270584 MS.gene053421:CDS
TCAACTACGCTGTTCTACCG+CGG 0.678877 1.4:+28272826 MS.gene053421:CDS
GTGTTGGCGATTTCAAAGGG+GGG 0.681741 1.4:+28271331 MS.gene053421:CDS
AAGCCTCTCTGAAGTAACTG+AGG 0.686516 1.4:-28272150 None:intergenic
TAGTGTTGGCGATTTCAAAG+GGG 0.690768 1.4:+28271329 MS.gene053421:CDS
TGCGGCATGAGAAAGACCCA+CGG 0.697860 1.4:-28271472 None:intergenic
AGCATGATTTGAAACGTGTG+GGG 0.698751 1.4:-28270802 None:intergenic
TGGTTCGGGGATGGTTACCG+CGG 0.700590 1.4:-28272843 None:intergenic
CTTGATAGATGGTAACAATG+GGG 0.715045 1.4:+28271977 MS.gene053421:CDS
CCAAAAGAATAACTTCAAAG+GGG 0.718508 1.4:-28273048 None:intergenic
CACATGAAACCAATGCAGTG+AGG 0.730416 1.4:-28270846 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAATTAGAACTATTAAATT+AGG + chr1.4:28272672-28272691 MS.gene053421:intron 15.0%
!! TTATTGACATTATTCATTAA+AGG + chr1.4:28272310-28272329 MS.gene053421:intron 15.0%
!! TTGAACAAATTTGAAAAATA+TGG - chr1.4:28272612-28272631 None:intergenic 15.0%
!! AATTATTCATTGGAATTTCA+TGG - chr1.4:28272638-28272657 None:intergenic 20.0%
!! ATGAAATTCCAATGAATAAT+TGG + chr1.4:28272637-28272656 MS.gene053421:intron 20.0%
!! ATGTCAATAAAGATGAAAAT+CGG - chr1.4:28272300-28272319 None:intergenic 20.0%
!!! AAAATTGTGATAGAACATTT+TGG + chr1.4:28272358-28272377 MS.gene053421:intron 20.0%
! ATGAAATAAAGAAGCTCAAT+AGG - chr1.4:28270682-28270701 None:intergenic 25.0%
! ATTCAATTCATAATGTCTCT+AGG + chr1.4:28272576-28272595 MS.gene053421:intron 25.0%
! CCAATAACATACAAAATCAA+TGG - chr1.4:28272729-28272748 None:intergenic 25.0%
! TCCAAAAGAATAACTTCAAA+GGG - chr1.4:28273052-28273071 None:intergenic 25.0%
! TCTTTGCCTAACTATATTAT+CGG + chr1.4:28271909-28271928 MS.gene053421:CDS 25.0%
! TGAAATAAAGAAGCTCAATA+GGG - chr1.4:28270681-28270700 None:intergenic 25.0%
! TTCAATTCATAATGTCTCTA+GGG + chr1.4:28272577-28272596 MS.gene053421:intron 25.0%
!! AGAACTTGAAAATTTTGAAC+TGG - chr1.4:28272387-28272406 None:intergenic 25.0%
!! TTAATTTTCCTGCTCTTATT+GGG + chr1.4:28270526-28270545 MS.gene053421:CDS 25.0%
!!! CCATTGATTTTGTATGTTAT+TGG + chr1.4:28272726-28272745 MS.gene053421:intron 25.0%
AACTTGATAGATGGTAACAA+TGG + chr1.4:28271975-28271994 MS.gene053421:CDS 30.0%
ACACGTATTGAATCATGTAT+CGG - chr1.4:28272495-28272514 None:intergenic 30.0%
ACTTCAAATCCATCTAAATC+AGG - chr1.4:28273085-28273104 None:intergenic 30.0%
ACTTGATAGATGGTAACAAT+GGG + chr1.4:28271976-28271995 MS.gene053421:CDS 30.0%
ATAATGAAACAGAATGAAGC+TGG + chr1.4:28270976-28270995 MS.gene053421:CDS 30.0%
ATAGCACACCAATTATTCAT+TGG - chr1.4:28272648-28272667 None:intergenic 30.0%
ATTGCTTTCATTGTACTTTG+TGG + chr1.4:28270745-28270764 MS.gene053421:CDS 30.0%
CAAATGTTATATAGCTTACC+TGG - chr1.4:28272247-28272266 None:intergenic 30.0%
CCAAAAGAATAACTTCAAAG+GGG - chr1.4:28273051-28273070 None:intergenic 30.0%
GAATGAACAGAAACTTATTG+TGG + chr1.4:28271686-28271705 MS.gene053421:CDS 30.0%
GCTTTCATTCATAGATTTGT+TGG + chr1.4:28272542-28272561 MS.gene053421:intron 30.0%
GGGAAAAATGTATGCATATT+GGG + chr1.4:28273185-28273204 MS.gene053421:CDS 30.0%
GTCCAAAAGAATAACTTCAA+AGG - chr1.4:28273053-28273072 None:intergenic 30.0%
TAACAATACATCCTAGTTTC+TGG - chr1.4:28272973-28272992 None:intergenic 30.0%
TATTAAAGTTGTTGCTGATC+AGG + chr1.4:28271446-28271465 MS.gene053421:CDS 30.0%
TCAATTCATAATGTCTCTAG+GGG + chr1.4:28272578-28272597 MS.gene053421:intron 30.0%
TGACACATTTGTTTAATAGC+TGG + chr1.4:28270770-28270789 MS.gene053421:CDS 30.0%
TGCAAACATTCCATTCAAAT+GGG + chr1.4:28270708-28270727 MS.gene053421:CDS 30.0%
TGTATGCATATTGGGTTTAA+TGG + chr1.4:28273193-28273212 MS.gene053421:CDS 30.0%
TTAAACTGTCGGAAACTTTA+GGG + chr1.4:28271073-28271092 MS.gene053421:CDS 30.0%
TTGTTTAATAGCTGGACTTA+TGG + chr1.4:28270778-28270797 MS.gene053421:CDS 30.0%
TTTCAGAAAGTCATGAGTAA+TGG + chr1.4:28271600-28271619 MS.gene053421:CDS 30.0%
! AAAGTCATGAGTAATGGAAT+GGG + chr1.4:28271606-28271625 MS.gene053421:CDS 30.0%
! ACCTTTACTTTAAGAAGCAT+AGG - chr1.4:28270901-28270920 None:intergenic 30.0%
! ATTGTTACATCTGTTTCTTC+CGG + chr1.4:28272986-28273005 MS.gene053421:CDS 30.0%
! CCTTTACTTTAAGAAGCATA+GGG - chr1.4:28270900-28270919 None:intergenic 30.0%
! CTTAATTTTCCTGCTCTTAT+TGG + chr1.4:28270525-28270544 MS.gene053421:CDS 30.0%
! GATGCCTAATGTTGATAAAA+CGG + chr1.4:28271116-28271135 MS.gene053421:CDS 30.0%
! TGAGATTTTGTATACTACCT+TGG + chr1.4:28271050-28271069 MS.gene053421:CDS 30.0%
!! TGAAAAAGTACCCATTTGAA+TGG - chr1.4:28270721-28270740 None:intergenic 30.0%
!!! AATTTCCCTTCAGGATTTTT+TGG - chr1.4:28273264-28273283 None:intergenic 30.0%
!!! GATTCTTGTGTTTCAAGTTT+TGG + chr1.4:28272004-28272023 MS.gene053421:CDS 30.0%
AACCTCACTCATGAATTGAA+TGG + chr1.4:28271144-28271163 MS.gene053421:CDS 35.0%
AATCCCATAACTGAATGCAT+TGG - chr1.4:28271636-28271655 None:intergenic 35.0%
ACCTCACTCATGAATTGAAT+GGG + chr1.4:28271145-28271164 MS.gene053421:CDS 35.0%
ACTTATGAGAGAGAAATTGG+AGG + chr1.4:28271512-28271531 MS.gene053421:CDS 35.0%
AGAACTCCAAAAAATCCTGA+AGG + chr1.4:28273255-28273274 MS.gene053421:CDS 35.0%
ATGCTATGGACAATTCAGAT+AGG + chr1.4:28271754-28271773 MS.gene053421:CDS 35.0%
ATGGTTAGGAACTTGATAGA+TGG + chr1.4:28271966-28271985 MS.gene053421:CDS 35.0%
ATGTATAAAGCAACAGCATC+TGG + chr1.4:28270499-28270518 MS.gene053421:CDS 35.0%
CAATTCATAATGTCTCTAGG+GGG + chr1.4:28272579-28272598 MS.gene053421:intron 35.0%
CAGAAATTTCTCCAGAAACT+AGG + chr1.4:28272959-28272978 MS.gene053421:CDS 35.0%
CATATGCAAGAAGATAATCC+AGG + chr1.4:28272226-28272245 MS.gene053421:CDS 35.0%
CATCTAAATCAGGCAAGTTA+AGG - chr1.4:28273075-28273094 None:intergenic 35.0%
CCAAAACATTTCATCTCCAA+AGG - chr1.4:28271801-28271820 None:intergenic 35.0%
CCCTATGCTTCTTAAAGTAA+AGG + chr1.4:28270897-28270916 MS.gene053421:CDS 35.0%
CGGGAAAAATGTATGCATAT+TGG + chr1.4:28273184-28273203 MS.gene053421:CDS 35.0%
CTTGATAGATGGTAACAATG+GGG + chr1.4:28271977-28271996 MS.gene053421:CDS 35.0%
GAAACTTATTGTGGATTCGA+TGG + chr1.4:28271695-28271714 MS.gene053421:CDS 35.0%
GAACTCCAAAAAATCCTGAA+GGG + chr1.4:28273256-28273275 MS.gene053421:CDS 35.0%
GAACTTGATGAATGATGCTA+TGG + chr1.4:28271740-28271759 MS.gene053421:CDS 35.0%
GATCAAAATTCCTTGTTCAG+AGG + chr1.4:28272887-28272906 MS.gene053421:CDS 35.0%
GCAACTTATGAGAGAGAAAT+TGG + chr1.4:28271509-28271528 MS.gene053421:CDS 35.0%
GTGCAAACATTCCATTCAAA+TGG + chr1.4:28270707-28270726 MS.gene053421:CDS 35.0%
GTGCATGTTAGATTTGACAT+AGG + chr1.4:28272098-28272117 MS.gene053421:CDS 35.0%
GTTAAACTGTCGGAAACTTT+AGG + chr1.4:28271072-28271091 MS.gene053421:CDS 35.0%
TACTACCTTGGTTAAACTGT+CGG + chr1.4:28271062-28271081 MS.gene053421:CDS 35.0%
TCGTCACCGATAATATAGTT+AGG - chr1.4:28271918-28271937 None:intergenic 35.0%
TCTATTAACATTGTCGCTGT+CGG - chr1.4:28272930-28272949 None:intergenic 35.0%
TGCTATGGACAATTCAGATA+GGG + chr1.4:28271755-28271774 MS.gene053421:CDS 35.0%
TGTTATTGGCAGTCAATGAA+AGG + chr1.4:28272740-28272759 MS.gene053421:intron 35.0%
TTATTGTGGATTCGATGGTA+AGG + chr1.4:28271700-28271719 MS.gene053421:CDS 35.0%
TTCGAATGCCTTAATCTTGT+TGG + chr1.4:28273010-28273029 MS.gene053421:CDS 35.0%
TTGAACATGGATATGCAACT+TGG + chr1.4:28272051-28272070 MS.gene053421:CDS 35.0%
TTGATAGATGGTAACAATGG+GGG + chr1.4:28271978-28271997 MS.gene053421:CDS 35.0%
TTTGGTACTTCCTAATGAAG+AGG + chr1.4:28271392-28271411 MS.gene053421:CDS 35.0%
! AAGATTAAGGCATTCGAATC+CGG - chr1.4:28273008-28273027 None:intergenic 35.0%
! CGATTGAGAAGATTCTAGAA+TGG + chr1.4:28270611-28270630 MS.gene053421:CDS 35.0%
! GAAAGTCATGAGTAATGGAA+TGG + chr1.4:28271605-28271624 MS.gene053421:CDS 35.0%
! GATTTAAGGTTGAGGTTGAT+AGG + chr1.4:28271886-28271905 MS.gene053421:CDS 35.0%
!! AAGTCTATGGCTTTATGCAA+GGG + chr1.4:28271858-28271877 MS.gene053421:CDS 35.0%
!! ATCGCCGTTTTATCAACATT+AGG - chr1.4:28271123-28271142 None:intergenic 35.0%
!! ATTCTAGAATGGCAGAAAGT+TGG + chr1.4:28270622-28270641 MS.gene053421:CDS 35.0%
!! CCTTTGGAGATGAAATGTTT+TGG + chr1.4:28271798-28271817 MS.gene053421:CDS 35.0%
!! CTTAACTTGCCTGATTTAGA+TGG + chr1.4:28273073-28273092 MS.gene053421:CDS 35.0%
!! TTAGTGTTGGCGATTTCAAA+GGG + chr1.4:28271328-28271347 MS.gene053421:CDS 35.0%
!! TTGCGATTCTTCTAGAATTG+CGG - chr1.4:28271493-28271512 None:intergenic 35.0%
!!! ATGCAAGGGTTTTGGATTTA+AGG + chr1.4:28271872-28271891 MS.gene053421:CDS 35.0%
!!! CCCCTTTGAAGTTATTCTTT+TGG + chr1.4:28273048-28273067 MS.gene053421:CDS 35.0%
!!! TCTTGTGTTTCAAGTTTTGG+CGG + chr1.4:28272007-28272026 MS.gene053421:CDS 35.0%
!!! TTTTCAGGTGATTTTGCACA+TGG + chr1.4:28271947-28271966 MS.gene053421:CDS 35.0%
AAATCGCCAACACTAAGCAT+TGG - chr1.4:28271324-28271343 None:intergenic 40.0%
AAGCTCAGAAGAAGAATTGC+GGG + chr1.4:28273165-28273184 MS.gene053421:CDS 40.0%
AAGGCCAATGCATTCAGTTA+TGG + chr1.4:28271629-28271648 MS.gene053421:CDS 40.0%
AGGCCAATGCATTCAGTTAT+GGG + chr1.4:28271630-28271649 MS.gene053421:CDS 40.0%
AGTTTCCGACAGTTTAACCA+AGG - chr1.4:28271070-28271089 None:intergenic 40.0%
ATATTATCGGTGACGAGAAG+AGG + chr1.4:28271922-28271941 MS.gene053421:CDS 40.0%
ATGGACAATTCAGATAGGGA+CGG + chr1.4:28271759-28271778 MS.gene053421:CDS 40.0%
CAAGATCTAGCCTCTTCATT+AGG - chr1.4:28271405-28271424 None:intergenic 40.0%
CAAGCTCAGAAGAAGAATTG+CGG + chr1.4:28273164-28273183 MS.gene053421:CDS 40.0%
CATAGGGATCAAAGTGATGA+GGG - chr1.4:28270884-28270903 None:intergenic 40.0%
CGTATTGAATCATGTATCGG+CGG - chr1.4:28272492-28272511 None:intergenic 40.0%
CTAATGAAGAGGCTAGATCT+TGG + chr1.4:28271403-28271422 MS.gene053421:CDS 40.0%
CTTGCATAAAGCCATAGACT+TGG - chr1.4:28271859-28271878 None:intergenic 40.0%
GATCAAAGTGATGAGGGTTA+TGG - chr1.4:28270878-28270897 None:intergenic 40.0%
TAGTTGAAACCGAAGAGCAA+GGG - chr1.4:28272813-28272832 None:intergenic 40.0%
TATTATCGGTGACGAGAAGA+GGG + chr1.4:28271923-28271942 MS.gene053421:CDS 40.0%
TCACTCATGAATTGAATGGG+AGG + chr1.4:28271148-28271167 MS.gene053421:CDS 40.0%
TCCCATTCAATTCATGAGTG+AGG - chr1.4:28271149-28271168 None:intergenic 40.0%
TGTAAGAGTCAAGGGAGATA+AGG + chr1.4:28271209-28271228 MS.gene053421:CDS 40.0%
TGTTCAGTACCAAATGCTAG+AGG + chr1.4:28272770-28272789 MS.gene053421:CDS 40.0%
TTCTATACCGATCACTGATC+CGG + chr1.4:28271182-28271201 MS.gene053421:CDS 40.0%
! AGCATGATTTGAAACGTGTG+GGG - chr1.4:28270805-28270824 None:intergenic 40.0%
! AGGTGATTTTGCACATGGTT+AGG + chr1.4:28271952-28271971 MS.gene053421:CDS 40.0%
! AGTTACGGCTTTTGAACTTC+CGG - chr1.4:28273120-28273139 None:intergenic 40.0%
! AGTTGGCGATTTTCTGATTG+CGG + chr1.4:28270639-28270658 MS.gene053421:CDS 40.0%
! ATGGATTTGAAGTTACCGCA+AGG + chr1.4:28273092-28273111 MS.gene053421:CDS 40.0%
! CAAAACAAGTATCGCGTAAC+AGG - chr1.4:28271376-28271395 None:intergenic 40.0%
! CAGCATGATTTGAAACGTGT+GGG - chr1.4:28270806-28270825 None:intergenic 40.0%
! CTGTTACGCGATACTTGTTT+TGG + chr1.4:28271374-28271393 MS.gene053421:CDS 40.0%
! TCAGCATGATTTGAAACGTG+TGG - chr1.4:28270807-28270826 None:intergenic 40.0%
! TCATGAGTAATGGAATGGGA+AGG + chr1.4:28271610-28271629 MS.gene053421:CDS 40.0%
!! CAACACTAAGCATTGGCATT+CGG - chr1.4:28271317-28271336 None:intergenic 40.0%
!! CAAGTCTATGGCTTTATGCA+AGG + chr1.4:28271857-28271876 MS.gene053421:CDS 40.0%
!! CTTAGTGTTGGCGATTTCAA+AGG + chr1.4:28271327-28271346 MS.gene053421:CDS 40.0%
!! CTTGCAACAGAATTGGCTTT+CGG - chr1.4:28273225-28273244 None:intergenic 40.0%
!! TAGTGTTGGCGATTTCAAAG+GGG + chr1.4:28271329-28271348 MS.gene053421:CDS 40.0%
!!! ATGGCTTTATGCAAGGGTTT+TGG + chr1.4:28271864-28271883 MS.gene053421:CDS 40.0%
!!! CAGGATTTTTTGGAGTTCTC+CGG - chr1.4:28273254-28273273 None:intergenic 40.0%
!!! GGGTTTTGGATTTAAGGTTG+AGG + chr1.4:28271878-28271897 MS.gene053421:CDS 40.0%
!!! TTTCAAGTTTTGGCGGAATC+TGG + chr1.4:28272014-28272033 MS.gene053421:CDS 40.0%
AACTCATGACCCTTGCTCTT+CGG + chr1.4:28272801-28272820 MS.gene053421:CDS 45.0%
ACAACATCCGGATCAGTGAT+CGG - chr1.4:28271192-28271211 None:intergenic 45.0%
AGACCTCAGTTACTTCAGAG+AGG + chr1.4:28272147-28272166 MS.gene053421:CDS 45.0%
AGAGTTCTTGCTGAAGCGAA+AGG + chr1.4:28270924-28270943 MS.gene053421:CDS 45.0%
AGGGAGCTTGGAATTGAGTA+TGG + chr1.4:28270949-28270968 MS.gene053421:CDS 45.0%
AGTCGAGGAAGGATTGAACA+TGG + chr1.4:28272038-28272057 MS.gene053421:CDS 45.0%
AGTGGAGTTTCTGTTGATGC+AGG + chr1.4:28271276-28271295 MS.gene053421:CDS 45.0%
AGTTTCTGTTGATGCAGGAC+CGG + chr1.4:28271281-28271300 MS.gene053421:CDS 45.0%
ATAGATGGTAACAATGGGGG+AGG + chr1.4:28271981-28272000 MS.gene053421:CDS 45.0%
ATTCTGTTGCAAGGATTCGC+CGG + chr1.4:28273232-28273251 MS.gene053421:CDS 45.0%
CACATGAAACCAATGCAGTG+AGG - chr1.4:28270849-28270868 None:intergenic 45.0%
CAGATACACCCAATAAGAGC+AGG - chr1.4:28270537-28270556 None:intergenic 45.0%
CAGCATGGCCAACAAGATTA+AGG - chr1.4:28273021-28273040 None:intergenic 45.0%
CCCTTGACTCTTACAACATC+CGG - chr1.4:28271204-28271223 None:intergenic 45.0%
CCGGATGTTGTAAGAGTCAA+GGG + chr1.4:28271201-28271220 MS.gene053421:CDS 45.0%
CGAAAGCCAATTCTGTTGCA+AGG + chr1.4:28273223-28273242 MS.gene053421:CDS 45.0%
CGAATGCCAATGCTTAGTGT+TGG + chr1.4:28271315-28271334 MS.gene053421:CDS 45.0%
CTTAATCTTGTTGGCCATGC+TGG + chr1.4:28273019-28273038 MS.gene053421:CDS 45.0%
CTTGAAAGTCCTCACTGCAT+TGG + chr1.4:28270837-28270856 MS.gene053421:CDS 45.0%
GATTCGATGGTAAGGACAAG+CGG + chr1.4:28271708-28271727 MS.gene053421:CDS 45.0%
GCATAGGGATCAAAGTGATG+AGG - chr1.4:28270885-28270904 None:intergenic 45.0%
GCGAATCCTTGCAACAGAAT+TGG - chr1.4:28273232-28273251 None:intergenic 45.0%
GGAAGTTCAAAAGCCGTAAC+TGG + chr1.4:28273119-28273138 MS.gene053421:CDS 45.0%
GGAGAAAAGGAACGCTATGA+TGG + chr1.4:28271557-28271576 MS.gene053421:CDS 45.0%
GGTGTATCTGCAACTGCTAA+TGG + chr1.4:28270547-28270566 MS.gene053421:CDS 45.0%
GTAGTTGAAACCGAAGAGCA+AGG - chr1.4:28272814-28272833 None:intergenic 45.0%
GTCATCGTCACAGTTGCATT+TGG - chr1.4:28270578-28270597 None:intergenic 45.0%
TAGATGGTAACAATGGGGGA+GGG + chr1.4:28271982-28272001 MS.gene053421:CDS 45.0%
TCAAACTTTCCTCGAATGCC+CGG - chr1.4:28272199-28272218 None:intergenic 45.0%
TCCGGATGTTGTAAGAGTCA+AGG + chr1.4:28271200-28271219 MS.gene053421:CDS 45.0%
TGAGGAAAGCCTCTAGCATT+TGG - chr1.4:28272782-28272801 None:intergenic 45.0%
TGGAGGTGGAAGATTTCCTT+TGG + chr1.4:28271782-28271801 MS.gene053421:CDS 45.0%
TTGAAGTTACCGCAAGGATC+CGG + chr1.4:28273098-28273117 MS.gene053421:CDS 45.0%
TTTGAACTTCCGGATCCTTG+CGG - chr1.4:28273110-28273129 None:intergenic 45.0%
! GAGCATTGCAACAGGAGAAA+AGG + chr1.4:28271544-28271563 MS.gene053421:CDS 45.0%
! TGACGAGAAGAGGGTTTTTC+AGG + chr1.4:28271932-28271951 MS.gene053421:CDS 45.0%
!! AAGCCTCTCTGAAGTAACTG+AGG - chr1.4:28272153-28272172 None:intergenic 45.0%
!! AGTGTTGGCGATTTCAAAGG+GGG + chr1.4:28271330-28271349 MS.gene053421:CDS 45.0%
!! GCCTATCGCTGTTGCTTTAA+CGG + chr1.4:28273141-28273160 MS.gene053421:CDS 45.0%
AAGGATGTGTACGAGTGACC+GGG + chr1.4:28272178-28272197 MS.gene053421:CDS 50.0%
AATTCAGATAGGGACGGTGG+AGG + chr1.4:28271765-28271784 MS.gene053421:CDS 50.0%
ACATCACCGTTAGACGAGCT+TGG - chr1.4:28272080-28272099 None:intergenic 50.0%
AGAGCAAGGGTCATGAGTTG+AGG - chr1.4:28272800-28272819 None:intergenic 50.0%
AGCTTGCATCGCCAAGTCTA+TGG + chr1.4:28271845-28271864 MS.gene053421:CDS 50.0%
CAACAGCGATAGGCCAGTTA+CGG - chr1.4:28273135-28273154 None:intergenic 50.0%
GAAGGATGTGTACGAGTGAC+CGG + chr1.4:28272177-28272196 MS.gene053421:CDS 50.0%
GACAATTCAGATAGGGACGG+TGG + chr1.4:28271762-28271781 MS.gene053421:CDS 50.0%
GACTTGCAGACCTCTGAACA+AGG - chr1.4:28272900-28272919 None:intergenic 50.0%
GCCGTTAAAGCAACAGCGAT+AGG - chr1.4:28273145-28273164 None:intergenic 50.0%
GTTACTTCAGAGAGGCTTGC+AGG + chr1.4:28272155-28272174 MS.gene053421:CDS 50.0%
TCAACTACGCTGTTCTACCG+CGG + chr1.4:28272826-28272845 MS.gene053421:CDS 50.0%
TGGAGACCAAGCTCGTCTAA+CGG + chr1.4:28272071-28272090 MS.gene053421:CDS 50.0%
! CAGAGGTCTGCAAGTCTTGT+TGG + chr1.4:28272904-28272923 MS.gene053421:CDS 50.0%
! CATGTATCGGCGGCTAATGA+AGG - chr1.4:28272482-28272501 None:intergenic 50.0%
! GCGAAATCGAGCATTGCAAC+AGG + chr1.4:28271536-28271555 MS.gene053421:CDS 50.0%
! GTGTTGGCGATTTCAAAGGG+GGG + chr1.4:28271331-28271350 MS.gene053421:CDS 50.0%
! TGGCGATTTTCTGATTGCGG+TGG + chr1.4:28270642-28270661 MS.gene053421:CDS 50.0%
ACTGTGACGATGACACGAGC+TGG + chr1.4:28270584-28270603 MS.gene053421:CDS 55.0%
CGGAATCTGGAAGTCGAGGA+AGG + chr1.4:28272027-28272046 MS.gene053421:CDS 55.0%
CTCTGAACTCTCCCCTGGTT+CGG - chr1.4:28272861-28272880 None:intergenic 55.0%
CTTCAGAGAGGCTTGCAGGA+AGG + chr1.4:28272159-28272178 MS.gene053421:CDS 55.0%
CTTGCTGAAGCGAAAGGCGA+GGG + chr1.4:28270930-28270949 MS.gene053421:CDS 55.0%
GATGACTCTGAACTCTCCCC+TGG - chr1.4:28272866-28272885 None:intergenic 55.0%
GGTTGCAGAACTGTGCTGTG+TGG + chr1.4:28271094-28271113 MS.gene053421:CDS 55.0%
GTTGCTGATCAGGTAGCCGT+GGG + chr1.4:28271456-28271475 MS.gene053421:CDS 55.0%
TAACAGGCCTCCGTTACCTC+AGG - chr1.4:28271360-28271379 None:intergenic 55.0%
TCTGAACTCTCCCCTGGTTC+GGG - chr1.4:28272860-28272879 None:intergenic 55.0%
TCTTGCTGAAGCGAAAGGCG+AGG + chr1.4:28270929-28270948 MS.gene053421:CDS 55.0%
TGCGGCATGAGAAAGACCCA+CGG - chr1.4:28271475-28271494 None:intergenic 55.0%
TGTTGCTGATCAGGTAGCCG+TGG + chr1.4:28271455-28271474 MS.gene053421:CDS 55.0%
TTGGCGGAATCTGGAAGTCG+AGG + chr1.4:28272023-28272042 MS.gene053421:CDS 55.0%
! GAACGCTATGATGGCGAGTG+AGG + chr1.4:28271566-28271585 MS.gene053421:CDS 55.0%
AAGCGAAAGGCGAGGGAGCT+TGG + chr1.4:28270937-28270956 MS.gene053421:CDS 60.0%
CGGTAACCATCCCCGAACCA+GGG + chr1.4:28272846-28272865 MS.gene053421:CDS 60.0%
GATGGCGAGTGAGGCTAGAG+CGG + chr1.4:28271575-28271594 MS.gene053421:CDS 60.0%
GGCATTCGGATCGCAGCAAC+CGG - chr1.4:28271303-28271322 None:intergenic 60.0%
GGTAACCATCCCCGAACCAG+GGG + chr1.4:28272847-28272866 MS.gene053421:CDS 60.0%
GTGACGATGACACGAGCTGG+TGG + chr1.4:28270587-28270606 MS.gene053421:CDS 60.0%
TACGAGTGACCGGGCATTCG+AGG + chr1.4:28272187-28272206 MS.gene053421:CDS 60.0%
TCAGATAGGGACGGTGGAGG+TGG + chr1.4:28271768-28271787 MS.gene053421:CDS 60.0%
TTTCAAAGGGGGGACGCCTG+AGG + chr1.4:28271341-28271360 MS.gene053421:CDS 60.0%
! CAAAGGGGCATGCACCAGCA+TGG - chr1.4:28273036-28273055 None:intergenic 60.0%
! CTGAACTCTCCCCTGGTTCG+GGG - chr1.4:28272859-28272878 None:intergenic 60.0%
! CTGCTTGCTGCTGCGAGTAG+TGG + chr1.4:28271258-28271277 MS.gene053421:CDS 60.0%
! TGGTTCGGGGATGGTTACCG+CGG - chr1.4:28272846-28272865 None:intergenic 60.0%
AGGGGGGACGCCTGAGGTAA+CGG + chr1.4:28271347-28271366 MS.gene053421:CDS 65.0%
GCGGTAACCATCCCCGAACC+AGG + chr1.4:28272845-28272864 MS.gene053421:CDS 65.0%
!! ACTCTCCCCTGGTTCGGGGA+TGG - chr1.4:28272855-28272874 None:intergenic 65.0%
! GGGGACGCCTGAGGTAACGG+AGG + chr1.4:28271350-28271369 MS.gene053421:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 28270499 28273285 28270499 ID=MS.gene053421
chr1.4 mRNA 28270499 28273285 28270499 ID=MS.gene053421.t1;Parent=MS.gene053421
chr1.4 exon 28270499 28272247 28270499 ID=MS.gene053421.t1.exon1;Parent=MS.gene053421.t1
chr1.4 CDS 28270499 28272247 28270499 ID=cds.MS.gene053421.t1;Parent=MS.gene053421.t1
chr1.4 exon 28272752 28273285 28272752 ID=MS.gene053421.t1.exon2;Parent=MS.gene053421.t1
chr1.4 CDS 28272752 28273285 28272752 ID=cds.MS.gene053421.t1;Parent=MS.gene053421.t1
Gene Sequence

>MS.gene053421

ATGTATAAAGCAACAGCATCTGGATTCTTAATTTTCCTGCTCTTATTGGGTGTATCTGCAACTGCTAATGGATTTTCCAAATGCAACTGTGACGATGACACGAGCTGGTGGACGATTGAGAAGATTCTAGAATGGCAGAAAGTTGGCGATTTTCTGATTGCGGTGGCGTACTTCTCGATCCCTATTGAGCTTCTTTATTTCATCAGTTGTGCAAACATTCCATTCAAATGGGTACTTTTTCAGTTCATTGCTTTCATTGTACTTTGTGGAATGACACATTTGTTTAATAGCTGGACTTATGGACCCCACACGTTTCAAATCATGCTGACTCTGACTGTCTTGAAAGTCCTCACTGCATTGGTTTCATGTGCAACTACCATAACCCTCATCACTTTGATCCCTATGCTTCTTAAAGTAAAGGTTCGAGAGTTCTTGCTGAAGCGAAAGGCGAGGGAGCTTGGAATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCGCTCGATAGACATGAGATTTTGTATACTACCTTGGTTAAACTGTCGGAAACTTTAGGGTTGCAGAACTGTGCTGTGTGGATGCCTAATGTTGATAAAACGGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACCGATCACTGATCCGGATGTTGTAAGAGTCAAGGGAGATAAGGTAGTGCATATGATTGATTCTGACTCGCTGCTTGCTGCTGCGAGTAGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGCTTAGTGTTGGCGATTTCAAAGGGGGGACGCCTGAGGTAACGGAGGCCTGTTACGCGATACTTGTTTTGGTACTTCCTAATGAAGAGGCTAGATCTTGGAGCAATCAAGAGCTTGAGATTATTAAAGTTGTTGCTGATCAGGTAGCCGTGGGTCTTTCTCATGCCGCAATTCTAGAAGAATCGCAACTTATGAGAGAGAAATTGGAGGAGCGAAATCGAGCATTGCAACAGGAGAAAAGGAACGCTATGATGGCGAGTGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGTAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGATTGCTTTCAATGATGCAAGATGAGAATTTGAAGAATGAACAGAAACTTATTGTGGATTCGATGGTAAGGACAAGCGGTGTCGTATCGAACTTGATGAATGATGCTATGGACAATTCAGATAGGGACGGTGGAGGTGGAAGATTTCCTTTGGAGATGAAATGTTTTGGTTTACATAACATGTTAAAACAAGCAGCTTGCATCGCCAAGTCTATGGCTTTATGCAAGGGTTTTGGATTTAAGGTTGAGGTTGATAGGTCTTTGCCTAACTATATTATCGGTGACGAGAAGAGGGTTTTTCAGGTGATTTTGCACATGGTTAGGAACTTGATAGATGGTAACAATGGGGGAGGGATTCTTGTGTTTCAAGTTTTGGCGGAATCTGGAAGTCGAGGAAGGATTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTAACGGTGATGTGCATGTTAGATTTGACATAGGTATCAATAGCAGTAACTCTGAATCAGAGACCTCAGTTACTTCAGAGAGGCTTGCAGGAAGGATGTGTACGAGTGACCGGGCATTCGAGGAAAGTTTGAGCTTCAGCATATGCAAGAAGATAATCCAGGTAAGCTATATAACATTTGTTGTGTATGTCTCAAGAGTTCGTTTATACACCGATTTTCATCTTTATTGACATTATTCATTAAAGGATCTTTTTCTGCATTGTTTCACTATAAAATTGTGATAGAACATTTTGGAATCCAGTTCAAAATTTTCAAGTTCTGTCTGATAAAATTGAGATCTTTTAAGCATAGCATTTGCGATTTAATTTACGTTGTTATATTTTATTTTCTTACCTTCATTAGCCGCCGATACATGATTCAATACGTGTAACTTGTCGATTTAGAGTTATTAGATAGCTTTCATTCATAGATTTGTTGGCTTATTTGATTATTCAATTCATAATGTCTCTAGGGGGATATTTACCATATTTTTCAAATTTGTTCAAGTTCCATGAAATTCCAATGAATAATTGGTGTGCTATATTTGTAATTAGAACTATTAAATTAGGTGTTTCTTTGTTCAGTAAATTCTTTTTCTCTCCATTGATTTTGTATGTTATTGGCAGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCTCAACTCATGACCCTTGCTCTTCGGTTTCAACTACGCTGTTCTACCGCGGTAACCATCCCCGAACCAGGGGAGAGTTCAGAGTCATCTGATCAAAATTCCTTGTTCAGAGGTCTGCAAGTCTTGTTGGCCGACAGCGACAATGTTAATAGAGCAGTAACACAGAAATTTCTCCAGAAACTAGGATGTATTGTTACATCTGTTTCTTCCGGATTCGAATGCCTTAATCTTGTTGGCCATGCTGGTGCATGCCCCTTTGAAGTTATTCTTTTGGACCTTAACTTGCCTGATTTAGATGGATTTGAAGTTACCGCAAGGATCCGGAAGTTCAAAAGCCGTAACTGGCCTATCGCTGTTGCTTTAACGGCAAGCTCAGAAGAAGAATTGCGGGAAAAATGTATGCATATTGGGTTTAATGGAGTTATCCGAAAGCCAATTCTGTTGCAAGGATTCGCCGGAGAACTCCAAAAAATCCTGAAGGGAAATTAG

Protein sequence

>MS.gene053421.t1

MYKATASGFLIFLLLLGVSATANGFSKCNCDDDTSWWTIEKILEWQKVGDFLIAVAYFSIPIELLYFISCANIPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMLTLTVLKVLTALVSCATTITLITLIPMLLKVKVREFLLKRKARELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHEILYTTLVKLSETLGLQNCAVWMPNVDKTAMNLTHELNGRNVNSSIPITDPDVVRVKGDKVVHMIDSDSLLAAASSGVSVDAGPVAAIRMPMLSVGDFKGGTPEVTEACYAILVLVLPNEEARSWSNQELEIIKVVADQVAVGLSHAAILEESQLMREKLEERNRALQQEKRNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKLIVDSMVRTSGVVSNLMNDAMDNSDRDGGGGRFPLEMKCFGLHNMLKQAACIAKSMALCKGFGFKVEVDRSLPNYIIGDEKRVFQVILHMVRNLIDGNNGGGILVFQVLAESGSRGRIEHGYATWRPSSSNGDVHVRFDIGINSSNSESETSVTSERLAGRMCTSDRAFEESLSFSICKKIIQSMKGNICSVPNARGFPQLMTLALRFQLRCSTAVTIPEPGESSESSDQNSLFRGLQVLLADSDNVNRAVTQKFLQKLGCIVTSVSSGFECLNLVGHAGACPFEVILLDLNLPDLDGFEVTARIRKFKSRNWPIAVALTASSEEELREKCMHIGFNGVIRKPILLQGFAGELQKILKGN