Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49884.t1 | XP_003621540.1 | 99.1 | 227 | 2 | 0 | 1 | 227 | 1 | 227 | 1.00E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49884.t1 | Q8LE94 | 58.3 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 2.8e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49884.t1 | B7FJQ8 | 99.1 | 227 | 2 | 0 | 1 | 227 | 1 | 227 | 7.5e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056309 | MS.gene49884 | 0.880742 | 4.27E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49884.t1 | MTR_7g016840 | 99.119 | 227 | 2 | 0 | 1 | 227 | 1 | 227 | 2.61e-169 | 465 |
| MS.gene49884.t1 | MTR_6g015980 | 71.681 | 226 | 64 | 0 | 1 | 226 | 1 | 226 | 6.59e-122 | 345 |
| MS.gene49884.t1 | MTR_6g015980 | 69.231 | 182 | 56 | 0 | 1 | 182 | 1 | 182 | 1.40e-89 | 262 |
| MS.gene49884.t1 | MTR_8g030510 | 36.196 | 163 | 84 | 2 | 61 | 223 | 44 | 186 | 1.33e-23 | 94.0 |
| MS.gene49884.t1 | MTR_8g098665 | 35.000 | 180 | 101 | 6 | 50 | 223 | 33 | 202 | 8.18e-23 | 92.0 |
| MS.gene49884.t1 | MTR_5g046970 | 62.000 | 50 | 19 | 0 | 171 | 220 | 78 | 127 | 6.45e-17 | 75.5 |
| MS.gene49884.t1 | MTR_2g087820 | 45.312 | 64 | 33 | 1 | 156 | 217 | 14 | 77 | 6.91e-13 | 67.4 |
| MS.gene49884.t1 | MTR_2g087820 | 45.312 | 64 | 33 | 1 | 156 | 217 | 14 | 77 | 7.23e-13 | 67.4 |
| MS.gene49884.t1 | MTR_7g106770 | 41.667 | 60 | 33 | 1 | 160 | 217 | 15 | 74 | 4.31e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49884.t1 | AT5G15790 | 55.603 | 232 | 98 | 3 | 1 | 227 | 1 | 232 | 1.73e-88 | 261 |
| MS.gene49884.t1 | AT5G15790 | 55.603 | 232 | 98 | 3 | 1 | 227 | 1 | 232 | 1.73e-88 | 261 |
| MS.gene49884.t1 | AT5G15790 | 55.603 | 232 | 98 | 3 | 1 | 227 | 1 | 232 | 1.73e-88 | 261 |
| MS.gene49884.t1 | AT5G15790 | 55.603 | 232 | 98 | 3 | 1 | 227 | 1 | 232 | 1.73e-88 | 261 |
| MS.gene49884.t1 | AT5G38895 | 53.304 | 227 | 96 | 2 | 1 | 226 | 1 | 218 | 1.21e-87 | 258 |
| MS.gene49884.t1 | AT5G38895 | 53.304 | 227 | 96 | 2 | 1 | 226 | 76 | 293 | 1.03e-86 | 259 |
| MS.gene49884.t1 | AT5G38895 | 53.304 | 227 | 96 | 2 | 1 | 226 | 115 | 332 | 3.17e-86 | 259 |
| MS.gene49884.t1 | AT5G15790 | 54.741 | 232 | 100 | 3 | 1 | 227 | 1 | 232 | 3.62e-86 | 256 |
| MS.gene49884.t1 | AT3G02290 | 58.298 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 3.72e-83 | 247 |
| MS.gene49884.t1 | AT3G02290 | 58.298 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 3.72e-83 | 247 |
| MS.gene49884.t1 | AT3G02290 | 58.298 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 3.72e-83 | 247 |
| MS.gene49884.t1 | AT3G02290 | 58.298 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 3.72e-83 | 247 |
| MS.gene49884.t1 | AT3G02290 | 58.298 | 235 | 86 | 4 | 1 | 227 | 1 | 231 | 3.72e-83 | 247 |
| MS.gene49884.t1 | AT3G02290 | 58.009 | 231 | 85 | 4 | 1 | 223 | 1 | 227 | 3.34e-80 | 240 |
| MS.gene49884.t1 | AT5G41350 | 35.593 | 177 | 100 | 5 | 55 | 226 | 43 | 210 | 1.82e-24 | 96.7 |
| MS.gene49884.t1 | AT5G41350 | 35.593 | 177 | 100 | 5 | 55 | 226 | 43 | 210 | 1.82e-24 | 96.7 |
| MS.gene49884.t1 | AT5G41350 | 36.000 | 175 | 98 | 5 | 55 | 224 | 68 | 233 | 3.09e-24 | 96.7 |
| MS.gene49884.t1 | AT1G69085 | 65.455 | 55 | 19 | 0 | 171 | 225 | 54 | 108 | 1.17e-21 | 86.7 |
| MS.gene49884.t1 | AT4G00335 | 33.333 | 183 | 91 | 6 | 51 | 225 | 28 | 187 | 5.69e-21 | 87.0 |
| MS.gene49884.t1 | AT4G00335 | 33.333 | 183 | 91 | 6 | 51 | 225 | 28 | 187 | 5.69e-21 | 87.0 |
| MS.gene49884.t1 | AT4G00335 | 33.333 | 183 | 91 | 6 | 51 | 225 | 28 | 187 | 5.69e-21 | 87.0 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 99 | 153 | 3.05e-17 | 76.3 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 99 | 153 | 3.05e-17 | 76.3 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 99 | 153 | 3.05e-17 | 76.3 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 99 | 153 | 3.05e-17 | 76.3 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 154 | 208 | 5.74e-17 | 76.6 |
| MS.gene49884.t1 | AT4G23450 | 58.182 | 55 | 23 | 0 | 172 | 226 | 154 | 208 | 5.74e-17 | 76.6 |
| MS.gene49884.t1 | AT4G14220 | 45.161 | 62 | 31 | 1 | 165 | 223 | 31 | 92 | 6.17e-13 | 67.4 |
| MS.gene49884.t1 | AT5G22000 | 42.647 | 68 | 37 | 1 | 152 | 217 | 6 | 73 | 4.69e-12 | 65.1 |
| MS.gene49884.t1 | AT5G22000 | 43.750 | 64 | 34 | 1 | 156 | 217 | 10 | 73 | 7.69e-12 | 64.3 |
| MS.gene49884.t1 | AT5G22000 | 43.750 | 64 | 34 | 1 | 156 | 217 | 10 | 73 | 7.69e-12 | 64.3 |
Find 53 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTCGAACTCAAAGATTC+TGG | 0.334628 | 7.4:+83265063 | None:intergenic |
| ATTCATCAATATTCCGTAGA+AGG | 0.334711 | 7.4:-83265317 | MS.gene49884:CDS |
| ATGAAGAGTCAGAACCTCTA+AGG | 0.349845 | 7.4:-83265104 | MS.gene49884:CDS |
| TGTAATCACCATTATCATCT+TGG | 0.369381 | 7.4:-83264172 | MS.gene49884:CDS |
| TTGCTTCCTACAAAACATTT+CGG | 0.374780 | 7.4:-83266315 | MS.gene49884:CDS |
| GGCGCTTCCTTCATCTGTAC+AGG | 0.397993 | 7.4:-83265286 | MS.gene49884:CDS |
| ACATCCACATCAACCCTTAG+AGG | 0.398565 | 7.4:+83265090 | None:intergenic |
| GCATCATAAGGTAACGGCCT+TGG | 0.417133 | 7.4:+83265198 | None:intergenic |
| TCGTCAGCAAAACTTACAAC+TGG | 0.421306 | 7.4:-83264973 | MS.gene49884:CDS |
| ATATGCAACCAAGATGATAA+TGG | 0.428358 | 7.4:+83264164 | None:intergenic |
| AATATTACCTTCCCACAAAC+AGG | 0.432696 | 7.4:+83264112 | None:intergenic |
| AAAGAATCCACTGGAAAAGA+TGG | 0.459871 | 7.4:-83265033 | MS.gene49884:CDS |
| TGACTCTTCATTCAAATGAC+TGG | 0.466664 | 7.4:+83265116 | None:intergenic |
| CTTTGAGTTCGAGTGGTAAG+TGG | 0.471217 | 7.4:-83265056 | MS.gene49884:CDS |
| CGAAAGTCTTACTGAGGACT+TGG | 0.474607 | 7.4:+83264993 | None:intergenic |
| TGCTGTGAGCGGAAATGCCT+AGG | 0.475931 | 7.4:+83265171 | None:intergenic |
| GCGCCTGCATTTCCCTTCTA+CGG | 0.477472 | 7.4:+83265304 | None:intergenic |
| TGCCTAGGGTCTGCATCATA+AGG | 0.490563 | 7.4:+83265186 | None:intergenic |
| TGTTGTCCAACATGTCTTGA+AGG | 0.500625 | 7.4:-83264913 | MS.gene49884:intron |
| AGTGACAGCTGTCCTGTTTG+TGG | 0.508370 | 7.4:-83264124 | MS.gene49884:CDS |
| ACTTGTTTCAAGACGTGAGA+AGG | 0.512160 | 7.4:-83265142 | MS.gene49884:CDS |
| GCGCTTCCTTCATCTGTACA+GGG | 0.517323 | 7.4:-83265285 | MS.gene49884:CDS |
| ATCCACATAGTCATGTGTAT+AGG | 0.525675 | 7.4:-83266355 | MS.gene49884:CDS |
| TCATAAGGTAACGGCCTTGG+AGG | 0.533910 | 7.4:+83265201 | None:intergenic |
| TTCATCAATATTCCGTAGAA+GGG | 0.549107 | 7.4:-83265316 | MS.gene49884:CDS |
| CTTGTTTCAAGACGTGAGAA+GGG | 0.550647 | 7.4:-83265141 | MS.gene49884:CDS |
| ATTCCGTAGAAGGGAAATGC+AGG | 0.562146 | 7.4:-83265307 | MS.gene49884:CDS |
| GTGACAGCTGTCCTGTTTGT+GGG | 0.566634 | 7.4:-83264123 | MS.gene49884:CDS |
| AAGTTACCTTCAAGACATGT+TGG | 0.571053 | 7.4:+83264907 | None:intergenic |
| CACTGGAAAAGATGGGTCAA+AGG | 0.575389 | 7.4:-83265025 | MS.gene49884:CDS |
| AGATATACCGTTCTCCTCCA+AGG | 0.579863 | 7.4:-83265215 | MS.gene49884:CDS |
| TGAAGAGTCAGAACCTCTAA+GGG | 0.583867 | 7.4:-83265103 | MS.gene49884:CDS |
| TTCCTATACACATGACTATG+TGG | 0.586658 | 7.4:+83266353 | None:intergenic |
| TGGTTGCATATACGAGTGGA+TGG | 0.587414 | 7.4:-83264152 | MS.gene49884:CDS |
| GCTGTGAGCGGAAATGCCTA+GGG | 0.588359 | 7.4:+83265172 | None:intergenic |
| AGAACCTCTAAGGGTTGATG+TGG | 0.590546 | 7.4:-83265094 | MS.gene49884:CDS |
| AAGAATCCACTGGAAAAGAT+GGG | 0.590563 | 7.4:-83265032 | MS.gene49884:CDS |
| CCAGAATCTTTGAGTTCGAG+TGG | 0.597311 | 7.4:-83265063 | MS.gene49884:CDS |
| GGGTCTGCATCATAAGGTAA+CGG | 0.597642 | 7.4:+83265192 | None:intergenic |
| GGTAAGTGGAAAGAATCCAC+TGG | 0.606191 | 7.4:-83265042 | MS.gene49884:CDS |
| TACCTTATGATGCAGACCCT+AGG | 0.614377 | 7.4:-83265188 | MS.gene49884:CDS |
| CGCTTCCTTCATCTGTACAG+GGG | 0.615527 | 7.4:-83265284 | MS.gene49884:CDS |
| TATAGGAACTGCGTTTGTGT+CGG | 0.618127 | 7.4:-83266338 | MS.gene49884:CDS |
| ATCTTGGTTGCATATACGAG+TGG | 0.623166 | 7.4:-83264156 | MS.gene49884:CDS |
| TGTGTATGCATCATCAGAAG+AGG | 0.628234 | 7.4:-83264941 | MS.gene49884:CDS |
| CAGCTGTCCTGTTTGTGGGA+AGG | 0.631029 | 7.4:-83264119 | MS.gene49884:intron |
| CAAGTCCGTCATGCTGTGAG+CGG | 0.633869 | 7.4:+83265160 | None:intergenic |
| GTAACGGCCTTGGAGGAGAA+CGG | 0.636124 | 7.4:+83265208 | None:intergenic |
| GTATGCATCATCAGAAGAGG+AGG | 0.639945 | 7.4:-83264938 | MS.gene49884:CDS |
| TGCTGACGAAAGTCTTACTG+AGG | 0.641679 | 7.4:+83264987 | None:intergenic |
| GCTTCCTTCATCTGTACAGG+GGG | 0.654449 | 7.4:-83265283 | MS.gene49884:CDS |
| GTCTTACTGAGGACTTGGAA+CGG | 0.666475 | 7.4:+83264998 | None:intergenic |
| CATTTCCGCTCACAGCATGA+CGG | 0.669127 | 7.4:-83265165 | MS.gene49884:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATTATATTATATT+AGG | - | chr7.4:83263499-83263518 | MS.gene49884:intron | 0.0% |
| !! | AAATAAAAAAAACTGTAAAA+CGG | + | chr7.4:83264816-83264835 | None:intergenic | 10.0% |
| !! | TATTATATTATATTAGGATT+AGG | - | chr7.4:83263510-83263529 | MS.gene49884:intron | 10.0% |
| !! | TATTGTATTATATTAGAATT+AGG | - | chr7.4:83263655-83263674 | MS.gene49884:intron | 10.0% |
| !!! | AAAATTTTGTTTGTATAAAT+TGG | - | chr7.4:83265028-83265047 | MS.gene49884:CDS | 10.0% |
| !!! | AAATTTTACAAATTAAGAAT+TGG | + | chr7.4:83265015-83265034 | None:intergenic | 10.0% |
| !!! | TTACAGTTTTTTTTATTTTT+GGG | - | chr7.4:83264818-83264837 | MS.gene49884:intron | 10.0% |
| !!! | TTTACAGTTTTTTTTATTTT+TGG | - | chr7.4:83264817-83264836 | MS.gene49884:intron | 10.0% |
| !! | AAAAAATTTGCATTGAAATT+TGG | + | chr7.4:83263335-83263354 | None:intergenic | 15.0% |
| !! | AATTTACAATAAGATACTTA+AGG | + | chr7.4:83263864-83263883 | None:intergenic | 15.0% |
| !!! | TTGACTTAATTTGTTTAATT+CGG | - | chr7.4:83264575-83264594 | MS.gene49884:intron | 15.0% |
| !! | AAGATAATTACACTATATTC+AGG | + | chr7.4:83266005-83266024 | None:intergenic | 20.0% |
| !! | ATTGGAAAAAAGTTATATGA+TGG | + | chr7.4:83264006-83264025 | None:intergenic | 20.0% |
| !! | ATTTGAACTGAATATATTTG+CGG | - | chr7.4:83266248-83266267 | MS.gene49884:intron | 20.0% |
| !! | CATTATAAAAAGAAGATCAT+AGG | + | chr7.4:83266205-83266224 | None:intergenic | 20.0% |
| !!! | ATTATCTTTTAAGAAGTATC+TGG | - | chr7.4:83266017-83266036 | MS.gene49884:intron | 20.0% |
| !!! | CATAGTTTGATTGATTTAAT+CGG | + | chr7.4:83265847-83265866 | None:intergenic | 20.0% |
| !!! | TCACATGTTTTGATTTTAAT+TGG | - | chr7.4:83265529-83265548 | MS.gene49884:intron | 20.0% |
| !!! | TGACTTAATTTGTTTAATTC+GGG | - | chr7.4:83264576-83264595 | MS.gene49884:intron | 20.0% |
| !!! | TTACCAAACGTTTTAAAAAT+TGG | - | chr7.4:83265591-83265610 | MS.gene49884:intron | 20.0% |
| !!! | TTTTATATCTAAAATCCTTC+TGG | - | chr7.4:83263364-83263383 | MS.gene49884:intron | 20.0% |
| !!! | TTTTATTTTTGTTTTGATGC+AGG | - | chr7.4:83266381-83266400 | MS.gene49884:CDS | 20.0% |
| !!! | TTTTTATGTTCCATAATCTA+AGG | - | chr7.4:83263139-83263158 | MS.gene49884:intron | 20.0% |
| ! | AAAAGAATTCTGATGAAAAG+GGG | + | chr7.4:83266066-83266085 | None:intergenic | 25.0% |
| ! | AAACAGACTATTACAATAAC+AGG | - | chr7.4:83265086-83265105 | MS.gene49884:CDS | 25.0% |
| ! | AAGACATTATCCTTTATACT+CGG | + | chr7.4:83263710-83263729 | None:intergenic | 25.0% |
| ! | AAGCATAATGTGAATGAATA+AGG | + | chr7.4:83264861-83264880 | None:intergenic | 25.0% |
| ! | AATCATATAGAATCTCACTT+TGG | + | chr7.4:83265570-83265589 | None:intergenic | 25.0% |
| ! | ACAAAAGAATTCTGATGAAA+AGG | + | chr7.4:83266068-83266087 | None:intergenic | 25.0% |
| ! | ACAACTCAAATGAAATAATG+TGG | + | chr7.4:83263593-83263612 | None:intergenic | 25.0% |
| ! | ACTACATTATCCTTTATACT+CGG | + | chr7.4:83263565-83263584 | None:intergenic | 25.0% |
| ! | ATAAAATCTGTCTGTAAACA+TGG | + | chr7.4:83264723-83264742 | None:intergenic | 25.0% |
| ! | ATTTCATGCACTTTAATACT+AGG | - | chr7.4:83264481-83264500 | MS.gene49884:intron | 25.0% |
| ! | CAAAAGAATTCTGATGAAAA+GGG | + | chr7.4:83266067-83266086 | None:intergenic | 25.0% |
| ! | GTAGAAAATATAAACACACT+TGG | + | chr7.4:83263902-83263921 | None:intergenic | 25.0% |
| ! | TATTGTAATAGTCTGTTTGT+TGG | + | chr7.4:83265084-83265103 | None:intergenic | 25.0% |
| ! | TCAAACAAATCCTTAGATTA+TGG | + | chr7.4:83263152-83263171 | None:intergenic | 25.0% |
| ! | TTAATTGGAAATCTGCTAAA+GGG | - | chr7.4:83265544-83265563 | MS.gene49884:intron | 25.0% |
| ! | TTGATGAATACTGAAATTCA+AGG | + | chr7.4:83264032-83264051 | None:intergenic | 25.0% |
| ! | TTTAATTGGAAATCTGCTAA+AGG | - | chr7.4:83265543-83265562 | MS.gene49884:intron | 25.0% |
| !! | ATAATTTTGTGGTATACTTG+TGG | - | chr7.4:83264603-83264622 | MS.gene49884:intron | 25.0% |
| !! | ATATTCAGGTTAAGAAAACA+AGG | + | chr7.4:83265991-83266010 | None:intergenic | 25.0% |
| !! | ATTCGGGTATTATAATTTTG+TGG | - | chr7.4:83264592-83264611 | MS.gene49884:intron | 25.0% |
| !! | CAAAACAAAGAATAGTCTTA+CGG | - | chr7.4:83263780-83263799 | MS.gene49884:intron | 25.0% |
| !! | TTACATTTTGTCACTATCTT+CGG | + | chr7.4:83265173-83265192 | None:intergenic | 25.0% |
| !!! | AAACGTTTTAAAAATTGGAC+GGG | - | chr7.4:83265596-83265615 | MS.gene49884:intron | 25.0% |
| !!! | AGAGTAATTAATTTGCCATA+CGG | + | chr7.4:83266109-83266128 | None:intergenic | 25.0% |
| !!! | CAAACGTTTTAAAAATTGGA+CGG | - | chr7.4:83265595-83265614 | MS.gene49884:intron | 25.0% |
| AACAATTAGTGTCAGTATTG+CGG | - | chr7.4:83264644-83264663 | MS.gene49884:intron | 30.0% | |
| AATTGAGTTCAAACAACAAG+TGG | + | chr7.4:83264522-83264541 | None:intergenic | 30.0% | |
| AGACATTATCCTTTATACTC+GGG | + | chr7.4:83263709-83263728 | None:intergenic | 30.0% | |
| ATATGCAACCAAGATGATAA+TGG | + | chr7.4:83265199-83265218 | None:intergenic | 30.0% | |
| ATGAATACTGAAATTCAAGG+TGG | + | chr7.4:83264029-83264048 | None:intergenic | 30.0% | |
| ATTCATCAATATTCCGTAGA+AGG | - | chr7.4:83264043-83264062 | MS.gene49884:intron | 30.0% | |
| CAGTGAACTATAATTGCATT+AGG | + | chr7.4:83266137-83266156 | None:intergenic | 30.0% | |
| CTACATTATCCTTTATACTC+GGG | + | chr7.4:83263564-83263583 | None:intergenic | 30.0% | |
| GTAAAACGGCTCAAAATTAA+GGG | + | chr7.4:83264802-83264821 | None:intergenic | 30.0% | |
| TGTAAAACGGCTCAAAATTA+AGG | + | chr7.4:83264803-83264822 | None:intergenic | 30.0% | |
| TGTAATCACCATTATCATCT+TGG | - | chr7.4:83265188-83265207 | MS.gene49884:CDS | 30.0% | |
| TTCATCAATATTCCGTAGAA+GGG | - | chr7.4:83264044-83264063 | MS.gene49884:intron | 30.0% | |
| TTGCTTCCTACAAAACATTT+CGG | - | chr7.4:83263045-83263064 | MS.gene49884:intron | 30.0% | |
| TTTACCCAATATAGTGCTTT+GGG | - | chr7.4:83265919-83265938 | MS.gene49884:intron | 30.0% | |
| ! | CTCAATTTTGTACGAAATGT+AGG | - | chr7.4:83264535-83264554 | MS.gene49884:intron | 30.0% |
| ! | GACAGATTTTATGTGTTTCA+CGG | - | chr7.4:83264731-83264750 | MS.gene49884:intron | 30.0% |
| ! | TGATTTAATCGGTTTAACCA+TGG | + | chr7.4:83265836-83265855 | None:intergenic | 30.0% |
| ! | TTTTACCCAATATAGTGCTT+TGG | - | chr7.4:83265918-83265937 | MS.gene49884:intron | 30.0% |
| !! | CTTTTTCACTGAATTGCTTT+TGG | - | chr7.4:83265293-83265312 | MS.gene49884:CDS | 30.0% |
| !! | TCAAAATTAAGGGTGTCTTA+GGG | + | chr7.4:83264792-83264811 | None:intergenic | 30.0% |
| !!! | AACTCTTTTCTGGTTTGTAT+TGG | + | chr7.4:83265467-83265486 | None:intergenic | 30.0% |
| !!! | CGTCCAATTTTTAAAACGTT+TGG | + | chr7.4:83265597-83265616 | None:intergenic | 30.0% |
| AAAACAAGGAATCCATGTAG+AGG | + | chr7.4:83265977-83265996 | None:intergenic | 35.0% | |
| AAAGAATCCACTGGAAAAGA+TGG | - | chr7.4:83264327-83264346 | MS.gene49884:intron | 35.0% | |
| AAATCTGTCTGTAAACATGG+AGG | + | chr7.4:83264720-83264739 | None:intergenic | 35.0% | |
| AAGAATCCACTGGAAAAGAT+GGG | - | chr7.4:83264328-83264347 | MS.gene49884:intron | 35.0% | |
| AAGTTACCTTCAAGACATGT+TGG | + | chr7.4:83264456-83264475 | None:intergenic | 35.0% | |
| AATATTACCTTCCCACAAAC+AGG | + | chr7.4:83265251-83265270 | None:intergenic | 35.0% | |
| ATCCACATAGTCATGTGTAT+AGG | - | chr7.4:83263005-83263024 | MS.gene49884:intron | 35.0% | |
| CAATCAATAACTTCGGTTGA+CGG | - | chr7.4:83263308-83263327 | MS.gene49884:intron | 35.0% | |
| GATCTCACTAGTTCAATCTT+TGG | - | chr7.4:83265874-83265893 | MS.gene49884:intron | 35.0% | |
| GGTCAACCAATCAATAACTT+CGG | - | chr7.4:83263301-83263320 | MS.gene49884:intron | 35.0% | |
| TACTGAAATTCAAGGTGGAT+TGG | + | chr7.4:83264024-83264043 | None:intergenic | 35.0% | |
| TGACTCTTCATTCAAATGAC+TGG | + | chr7.4:83264247-83264266 | None:intergenic | 35.0% | |
| TGGAAATGACTGATCAAAGT+TGG | + | chr7.4:83265447-83265466 | None:intergenic | 35.0% | |
| TTCCTATACACATGACTATG+TGG | + | chr7.4:83263010-83263029 | None:intergenic | 35.0% | |
| ! | ATCTAGATCTAGTTCAACCA+TGG | - | chr7.4:83265816-83265835 | MS.gene49884:intron | 35.0% |
| ! | GAATATGTTACTTGACCGTA+TGG | - | chr7.4:83266091-83266110 | MS.gene49884:intron | 35.0% |
| ! | GTAGAATTGGAACTCTTTTC+TGG | + | chr7.4:83265477-83265496 | None:intergenic | 35.0% |
| ! | TCTTCCCAAAGCACTATATT+GGG | + | chr7.4:83265926-83265945 | None:intergenic | 35.0% |
| !! | CTCAAAATTAAGGGTGTCTT+AGG | + | chr7.4:83264793-83264812 | None:intergenic | 35.0% |
| !!! | ATGTTTTGAGGGCTTGAAAT+TGG | - | chr7.4:83266276-83266295 | MS.gene49884:intron | 35.0% |
| ACAACCAGGACCAAATCAAT+TGG | + | chr7.4:83265664-83265683 | None:intergenic | 40.0% | |
| ACATAGATGAGAGAGAACGA+AGG | + | chr7.4:83263456-83263475 | None:intergenic | 40.0% | |
| ACGGTACTATTGCATTGCAA+TGG | - | chr7.4:83264750-83264769 | MS.gene49884:intron | 40.0% | |
| ACTTGTTTCAAGACGTGAGA+AGG | - | chr7.4:83264218-83264237 | MS.gene49884:intron | 40.0% | |
| AGCTAGTTCGCCAATTGATT+TGG | - | chr7.4:83265651-83265670 | MS.gene49884:intron | 40.0% | |
| ATAGAGCACACAAAAGTCAG+TGG | - | chr7.4:83265332-83265351 | MS.gene49884:intron | 40.0% | |
| ATCTTGGTTGCATATACGAG+TGG | - | chr7.4:83265204-83265223 | MS.gene49884:CDS | 40.0% | |
| ATGAAGAGTCAGAACCTCTA+AGG | - | chr7.4:83264256-83264275 | MS.gene49884:intron | 40.0% | |
| ATGAGAACCTATGCAGTGTT+TGG | + | chr7.4:83264684-83264703 | None:intergenic | 40.0% | |
| ATTAGTGTCAGTATTGCGGT+CGG | - | chr7.4:83264648-83264667 | MS.gene49884:intron | 40.0% | |
| CATAGATGAGAGAGAACGAA+GGG | + | chr7.4:83263455-83263474 | None:intergenic | 40.0% | |
| CGTCAACCGAAGTTATTGAT+TGG | + | chr7.4:83263310-83263329 | None:intergenic | 40.0% | |
| CTCTTCAGTGTATTCTGCAA+GGG | + | chr7.4:83265147-83265166 | None:intergenic | 40.0% | |
| CTTGTTCAACTGGTTGAATC+AGG | - | chr7.4:83265624-83265643 | MS.gene49884:intron | 40.0% | |
| CTTGTTTCAAGACGTGAGAA+GGG | - | chr7.4:83264219-83264238 | MS.gene49884:intron | 40.0% | |
| GATGTTCGCTAATAGATGGA+GGG | + | chr7.4:83264946-83264965 | None:intergenic | 40.0% | |
| GGTCCTTGTTGCAAACAAAA+CGG | - | chr7.4:83265049-83265068 | MS.gene49884:CDS | 40.0% | |
| GTTAATAGCACTCCTCTACA+TGG | - | chr7.4:83265962-83265981 | MS.gene49884:intron | 40.0% | |
| TAGAGCACACAAAAGTCAGT+GGG | - | chr7.4:83265333-83265352 | MS.gene49884:intron | 40.0% | |
| TAGCAAACTTACCAAGTCTC+TGG | - | chr7.4:83265399-83265418 | MS.gene49884:intron | 40.0% | |
| TATAGGAACTGCGTTTGTGT+CGG | - | chr7.4:83263022-83263041 | MS.gene49884:intron | 40.0% | |
| TCAGTTCAAATGCAGTACAC+TGG | + | chr7.4:83266239-83266258 | None:intergenic | 40.0% | |
| TCGTCAGCAAAACTTACAAC+TGG | - | chr7.4:83264387-83264406 | MS.gene49884:intron | 40.0% | |
| TCTCTTCAGTGTATTCTGCA+AGG | + | chr7.4:83265148-83265167 | None:intergenic | 40.0% | |
| TGAAGAGTCAGAACCTCTAA+GGG | - | chr7.4:83264257-83264276 | MS.gene49884:intron | 40.0% | |
| TGAGAACCTATGCAGTGTTT+GGG | + | chr7.4:83264683-83264702 | None:intergenic | 40.0% | |
| TGTGTATGCATCATCAGAAG+AGG | - | chr7.4:83264419-83264438 | MS.gene49884:intron | 40.0% | |
| TGTTGTCCAACATGTCTTGA+AGG | - | chr7.4:83264447-83264466 | MS.gene49884:intron | 40.0% | |
| TTGAACACTCCCGAGTATAA+AGG | - | chr7.4:83263552-83263571 | MS.gene49884:intron | 40.0% | |
| ! | CAACAGCCGAAATGTTTTGT+AGG | + | chr7.4:83263054-83263073 | None:intergenic | 40.0% |
| ! | CTCTTCCCAAAGCACTATAT+TGG | + | chr7.4:83265927-83265946 | None:intergenic | 40.0% |
| ! | GCTAATCTAGAACTTTGCTG+AGG | - | chr7.4:83263110-83263129 | MS.gene49884:intron | 40.0% |
| !! | CAATATAGTGCTTTGGGAAG+AGG | - | chr7.4:83265925-83265944 | MS.gene49884:intron | 40.0% |
| !! | TTGATTTGGTCCTGGTTGTA+TGG | - | chr7.4:83265665-83265684 | MS.gene49884:intron | 40.0% |
| !!! | CATCCGTTTTGTTTGCAACA+AGG | + | chr7.4:83265055-83265074 | None:intergenic | 40.0% |
| ACATCCACATCAACCCTTAG+AGG | + | chr7.4:83264273-83264292 | None:intergenic | 45.0% | |
| AGAACCTATGCAGTGTTTGG+GGG | + | chr7.4:83264681-83264700 | None:intergenic | 45.0% | |
| AGATATACCGTTCTCCTCCA+AGG | - | chr7.4:83264145-83264164 | MS.gene49884:CDS | 45.0% | |
| AGGATTGAACCACGATTCGT+TGG | - | chr7.4:83265702-83265721 | MS.gene49884:intron | 45.0% | |
| ATGAGAGAGAACGAAGGGTA+GGG | + | chr7.4:83263450-83263469 | None:intergenic | 45.0% | |
| ATTCCGTAGAAGGGAAATGC+AGG | - | chr7.4:83264053-83264072 | MS.gene49884:intron | 45.0% | |
| CAAACCCGTTGCATTGCATT+GGG | + | chr7.4:83263247-83263266 | None:intergenic | 45.0% | |
| CACTGGAAAAGATGGGTCAA+AGG | - | chr7.4:83264335-83264354 | MS.gene49884:intron | 45.0% | |
| CCACTCGAACTCAAAGATTC+TGG | + | chr7.4:83264300-83264319 | None:intergenic | 45.0% | |
| CGAAAGTCTTACTGAGGACT+TGG | + | chr7.4:83264370-83264389 | None:intergenic | 45.0% | |
| CTTGACCCAATGCAATGCAA+CGG | - | chr7.4:83263239-83263258 | MS.gene49884:intron | 45.0% | |
| GAGAACCTATGCAGTGTTTG+GGG | + | chr7.4:83264682-83264701 | None:intergenic | 45.0% | |
| GCAGGATGTTCGCTAATAGA+TGG | + | chr7.4:83264950-83264969 | None:intergenic | 45.0% | |
| GGATGTTCGCTAATAGATGG+AGG | + | chr7.4:83264947-83264966 | None:intergenic | 45.0% | |
| GGGTCTGCATCATAAGGTAA+CGG | + | chr7.4:83264171-83264190 | None:intergenic | 45.0% | |
| GGTAAGTGGAAAGAATCCAC+TGG | - | chr7.4:83264318-83264337 | MS.gene49884:intron | 45.0% | |
| GTATGCATCATCAGAAGAGG+AGG | - | chr7.4:83264422-83264441 | MS.gene49884:intron | 45.0% | |
| GTCTTACTGAGGACTTGGAA+CGG | + | chr7.4:83264365-83264384 | None:intergenic | 45.0% | |
| TACCTTATGATGCAGACCCT+AGG | - | chr7.4:83264172-83264191 | MS.gene49884:CDS | 45.0% | |
| TGACCCAAAAACTGGGATAC+CGG | + | chr7.4:83264975-83264994 | None:intergenic | 45.0% | |
| TGCAAAACACAGAAGGTGGT+GGG | + | chr7.4:83264915-83264934 | None:intergenic | 45.0% | |
| TGCACTCTTAACCAGAGACT+TGG | + | chr7.4:83265413-83265432 | None:intergenic | 45.0% | |
| TGCTGACGAAAGTCTTACTG+AGG | + | chr7.4:83264376-83264395 | None:intergenic | 45.0% | |
| TGGTTGCATATACGAGTGGA+TGG | - | chr7.4:83265208-83265227 | MS.gene49884:CDS | 45.0% | |
| TTGAACCACGATTCGTTGGT+TGG | - | chr7.4:83265706-83265725 | MS.gene49884:intron | 45.0% | |
| TTGACCCAATGCAATGCAAC+GGG | - | chr7.4:83263240-83263259 | MS.gene49884:intron | 45.0% | |
| ! | ACTGTTGGGACTGGTAGAAT+TGG | + | chr7.4:83265490-83265509 | None:intergenic | 45.0% |
| ! | CCAGAATCTTTGAGTTCGAG+TGG | - | chr7.4:83264297-83264316 | MS.gene49884:intron | 45.0% |
| ! | CTTTGACCCATCTTTTCCAG+TGG | + | chr7.4:83264337-83264356 | None:intergenic | 45.0% |
| ! | CTTTGAGTTCGAGTGGTAAG+TGG | - | chr7.4:83264304-83264323 | MS.gene49884:intron | 45.0% |
| ! | GGTGCGTTGATGCATATTGA+AGG | + | chr7.4:83263843-83263862 | None:intergenic | 45.0% |
| ! | TCTAAAATCCTTCTGGACCG+TGG | - | chr7.4:83263371-83263390 | MS.gene49884:intron | 45.0% |
| ! | TTTGCGGTGAGCATGTTTTG+AGG | - | chr7.4:83266264-83266283 | MS.gene49884:intron | 45.0% |
| !! | ACGGGAATAGCTTGTTCAAC+TGG | - | chr7.4:83265614-83265633 | MS.gene49884:intron | 45.0% |
| !! | AGAACCTCTAAGGGTTGATG+TGG | - | chr7.4:83264266-83264285 | MS.gene49884:intron | 45.0% |
| !! | TTCGCCAATTGATTTGGTCC+TGG | - | chr7.4:83265657-83265676 | MS.gene49884:intron | 45.0% |
| !! | TTGCGGTGAGCATGTTTTGA+GGG | - | chr7.4:83266265-83266284 | MS.gene49884:intron | 45.0% |
| ACCAACCAACCAACGAATCG+TGG | + | chr7.4:83265714-83265733 | None:intergenic | 50.0% | |
| ACGAAGGGTAGGGTTGCATT+AGG | + | chr7.4:83263440-83263459 | None:intergenic | 50.0% | |
| AGTGACAGCTGTCCTGTTTG+TGG | - | chr7.4:83265236-83265255 | MS.gene49884:CDS | 50.0% | |
| ATTAGCGAACATCCTGCACC+CGG | - | chr7.4:83264953-83264972 | MS.gene49884:CDS | 50.0% | |
| CAGCAATCCACGCATTCATG+CGG | - | chr7.4:83263280-83263299 | MS.gene49884:intron | 50.0% | |
| CATTTCCGCTCACAGCATGA+CGG | - | chr7.4:83264195-83264214 | MS.gene49884:CDS | 50.0% | |
| CCAAACCCGTTGCATTGCAT+TGG | + | chr7.4:83263248-83263267 | None:intergenic | 50.0% | |
| CGCTTCCTTCATCTGTACAG+GGG | - | chr7.4:83264076-83264095 | MS.gene49884:intron | 50.0% | |
| CGTCAGCACAGAACACTGTT+GGG | + | chr7.4:83265504-83265523 | None:intergenic | 50.0% | |
| CTAATAGATGGAGGGAGAGG+CGG | + | chr7.4:83264938-83264957 | None:intergenic | 50.0% | |
| GAACCTATGCAGTGTTTGGG+GGG | + | chr7.4:83264680-83264699 | None:intergenic | 50.0% | |
| GACCCAAAAACTGGGATACC+GGG | + | chr7.4:83264974-83264993 | None:intergenic | 50.0% | |
| GATGAGAGAGAACGAAGGGT+AGG | + | chr7.4:83263451-83263470 | None:intergenic | 50.0% | |
| GCGCTTCCTTCATCTGTACA+GGG | - | chr7.4:83264075-83264094 | MS.gene49884:intron | 50.0% | |
| GCTTCCTTCATCTGTACAGG+GGG | - | chr7.4:83264077-83264096 | MS.gene49884:intron | 50.0% | |
| GTATGGCAGTCTGGTCTAAG+AGG | - | chr7.4:83265682-83265701 | MS.gene49884:intron | 50.0% | |
| GTGACAGCTGTCCTGTTTGT+GGG | - | chr7.4:83265237-83265256 | MS.gene49884:CDS | 50.0% | |
| GTGCAAAACACAGAAGGTGG+TGG | + | chr7.4:83264916-83264935 | None:intergenic | 50.0% | |
| TCGCTAATAGATGGAGGGAG+AGG | + | chr7.4:83264941-83264960 | None:intergenic | 50.0% | |
| TGCCTAGGGTCTGCATCATA+AGG | + | chr7.4:83264177-83264196 | None:intergenic | 50.0% | |
| ! | ACCACGATTCGTTGGTTGGT+TGG | - | chr7.4:83265710-83265729 | MS.gene49884:intron | 50.0% |
| ! | CACCCGGTATCCCAGTTTTT+GGG | - | chr7.4:83264969-83264988 | MS.gene49884:CDS | 50.0% |
| ! | CCAATGCAATGCAACGGGTT+TGG | - | chr7.4:83263245-83263264 | MS.gene49884:intron | 50.0% |
| ! | GCATCATAAGGTAACGGCCT+TGG | + | chr7.4:83264165-83264184 | None:intergenic | 50.0% |
| ! | TCATAAGGTAACGGCCTTGG+AGG | + | chr7.4:83264162-83264181 | None:intergenic | 50.0% |
| !! | AAGTCAGTGGGCTGAGAAAC+AGG | - | chr7.4:83265345-83265364 | MS.gene49884:intron | 50.0% |
| AAAACTGGGATACCGGGTGC+AGG | + | chr7.4:83264968-83264987 | None:intergenic | 55.0% | |
| AGCCAGCACATCAGTGACCA+CGG | + | chr7.4:83263391-83263410 | None:intergenic | 55.0% | |
| AGCCTCGCTGACCCAAAAAC+TGG | + | chr7.4:83264983-83265002 | None:intergenic | 55.0% | |
| AGTGTCAGTATTGCGGTCGG+TGG | - | chr7.4:83264651-83264670 | MS.gene49884:intron | 55.0% | |
| ATCAGTGACCACGGTCCAGA+AGG | + | chr7.4:83263382-83263401 | None:intergenic | 55.0% | |
| CAAGTCCGTCATGCTGTGAG+CGG | + | chr7.4:83264203-83264222 | None:intergenic | 55.0% | |
| CAGCTGTCCTGTTTGTGGGA+AGG | - | chr7.4:83265241-83265260 | MS.gene49884:CDS | 55.0% | |
| CTGTGTCGGATTGTGACAGC+AGG | - | chr7.4:83263409-83263428 | MS.gene49884:intron | 55.0% | |
| GACCAGACTGCCATACAACC+AGG | + | chr7.4:83265678-83265697 | None:intergenic | 55.0% | |
| GAGGCGGTGCAAAACACAGA+AGG | + | chr7.4:83264922-83264941 | None:intergenic | 55.0% | |
| GCACAGAACACTGTTGGGAC+TGG | + | chr7.4:83265499-83265518 | None:intergenic | 55.0% | |
| GCCTCGCTGACCCAAAAACT+GGG | + | chr7.4:83264982-83265001 | None:intergenic | 55.0% | |
| GCGCCTGCATTTCCCTTCTA+CGG | + | chr7.4:83264059-83264078 | None:intergenic | 55.0% | |
| GCGGTGCAAAACACAGAAGG+TGG | + | chr7.4:83264919-83264938 | None:intergenic | 55.0% | |
| GCGTCAGCACAGAACACTGT+TGG | + | chr7.4:83265505-83265524 | None:intergenic | 55.0% | |
| GCTGTGAGCGGAAATGCCTA+GGG | + | chr7.4:83264191-83264210 | None:intergenic | 55.0% | |
| GGCGCTTCCTTCATCTGTAC+AGG | - | chr7.4:83264074-83264093 | MS.gene49884:intron | 55.0% | |
| GTAACGGCCTTGGAGGAGAA+CGG | + | chr7.4:83264155-83264174 | None:intergenic | 55.0% | |
| GTCCTGGTTGTATGGCAGTC+TGG | - | chr7.4:83265673-83265692 | MS.gene49884:intron | 55.0% | |
| TCACCCCCCAAACACTGCAT+AGG | - | chr7.4:83264674-83264693 | MS.gene49884:intron | 55.0% | |
| TGCTGTGAGCGGAAATGCCT+AGG | + | chr7.4:83264192-83264211 | None:intergenic | 55.0% | |
| TGGTTGACCGCATGAATGCG+TGG | + | chr7.4:83263290-83263309 | None:intergenic | 55.0% | |
| ! | GCACCCGGTATCCCAGTTTT+TGG | - | chr7.4:83264968-83264987 | MS.gene49884:CDS | 55.0% |
| !! | AAGGTGGTGGGTTCGCAACA+GGG | + | chr7.4:83264903-83264922 | None:intergenic | 55.0% |
| !! | CACTGATGTGCTGGCTGTGT+CGG | - | chr7.4:83263395-83263414 | MS.gene49884:intron | 55.0% |
| !!! | TCCCAGTTTTTGGGTCAGCG+AGG | - | chr7.4:83264978-83264997 | MS.gene49884:CDS | 55.0% |
| GACCGTGGTCACTGATGTGC+TGG | - | chr7.4:83263386-83263405 | MS.gene49884:intron | 60.0% | |
| GCTGCCCCCTGTACAGATGA+AGG | + | chr7.4:83264084-83264103 | None:intergenic | 60.0% | |
| TTTGGGTCAGCGAGGCTCGT+TGG | - | chr7.4:83264986-83265005 | MS.gene49884:CDS | 60.0% | |
| !! | GAAGGTGGTGGGTTCGCAAC+AGG | + | chr7.4:83264904-83264923 | None:intergenic | 60.0% |
| !! | TGGTGGGTTCGCAACAGGGA+AGG | + | chr7.4:83264899-83264918 | None:intergenic | 60.0% |
| GGGTCAGCGAGGCTCGTTGG+AGG | - | chr7.4:83264989-83265008 | MS.gene49884:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 83262953 | 83266429 | 83262953 | ID=MS.gene49884 |
| chr7.4 | mRNA | 83262953 | 83266429 | 83262953 | ID=MS.gene49884.t1;Parent=MS.gene49884 |
| chr7.4 | exon | 83266310 | 83266429 | 83266310 | ID=MS.gene49884.t1.exon1;Parent=MS.gene49884.t1 |
| chr7.4 | CDS | 83266310 | 83266429 | 83266310 | ID=cds.MS.gene49884.t1;Parent=MS.gene49884.t1 |
| chr7.4 | exon | 83264914 | 83265340 | 83264914 | ID=MS.gene49884.t1.exon2;Parent=MS.gene49884.t1 |
| chr7.4 | CDS | 83264914 | 83265340 | 83264914 | ID=cds.MS.gene49884.t1;Parent=MS.gene49884.t1 |
| chr7.4 | exon | 83264120 | 83264229 | 83264120 | ID=MS.gene49884.t1.exon3;Parent=MS.gene49884.t1 |
| chr7.4 | CDS | 83264120 | 83264229 | 83264120 | ID=cds.MS.gene49884.t1;Parent=MS.gene49884.t1 |
| chr7.4 | exon | 83262953 | 83262979 | 83262953 | ID=MS.gene49884.t1.exon4;Parent=MS.gene49884.t1 |
| chr7.4 | CDS | 83262953 | 83262979 | 83262953 | ID=cds.MS.gene49884.t1;Parent=MS.gene49884.t1 |
| Gene Sequence |
| Protein sequence |
