AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49909

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49909.t1 MTR_6g084700 96.552 812 23 2 1 807 1 812 0.0 1610
MS.gene49909.t1 MTR_1g050535 52.212 791 307 10 66 798 37 814 0.0 759
MS.gene49909.t1 MTR_1g050535 52.212 791 307 10 66 798 37 814 0.0 758
MS.gene49909.t1 MTR_8g464450 51.079 695 312 8 102 782 52 732 0.0 700
MS.gene49909.t1 MTR_3g055090 49.859 708 327 9 93 786 39 732 0.0 697
MS.gene49909.t1 MTR_3g113170 37.797 590 313 14 209 758 874 1449 1.15e-96 331
MS.gene49909.t1 MTR_3g113170 37.797 590 313 14 209 758 874 1449 1.84e-96 331
MS.gene49909.t1 MTR_1g023510 39.351 493 238 11 218 661 867 1347 2.06e-95 328
MS.gene49909.t1 MTR_3g064370 32.568 479 283 13 217 682 29 480 4.79e-55 198
MS.gene49909.t1 MTR_5g090300 34.979 466 261 15 217 667 29 467 1.16e-48 180
MS.gene49909.t1 MTR_3g449620 33.763 465 268 14 217 667 29 467 3.00e-47 176
MS.gene49909.t1 MTR_3g064370 30.952 420 260 12 276 682 1 403 1.03e-41 158
MS.gene49909.t1 MTR_3g064370 31.551 374 223 9 217 577 29 382 3.59e-38 147
MS.gene49909.t1 MTR_3g054420 38.462 195 115 4 605 798 88 278 2.87e-34 133
MS.gene49909.t1 MTR_2g039160 26.619 556 278 22 213 660 3 536 3.66e-32 132
MS.gene49909.t1 MTR_3g055020 37.306 193 112 5 595 786 245 429 6.71e-30 124
MS.gene49909.t1 MTR_3g033000 23.362 458 292 16 241 674 33 455 2.69e-23 104
MS.gene49909.t1 MTR_3g033000 23.618 398 247 15 241 614 33 397 4.40e-15 78.6
MS.gene49909.t1 MTR_1g087400 41.837 98 30 2 218 315 5 75 2.88e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49909.t1 AT1G62830 67.575 734 221 5 63 786 111 837 0.0 998
MS.gene49909.t1 AT3G10390 54.648 710 285 7 103 786 127 825 0.0 761
MS.gene49909.t1 AT3G10390 54.648 710 285 7 103 786 127 825 0.0 761
MS.gene49909.t1 AT3G10390 54.648 710 285 7 103 786 75 773 0.0 759
MS.gene49909.t1 AT3G10390 54.648 710 285 7 103 786 75 773 0.0 757
MS.gene49909.t1 AT3G13682 52.329 730 318 11 69 782 4 719 0.0 709
MS.gene49909.t1 AT4G16310 38.218 505 245 10 213 663 615 1106 7.20e-92 317
MS.gene49909.t1 AT4G16310 38.218 505 245 10 213 663 615 1106 7.20e-92 317
MS.gene49909.t1 AT4G16310 38.218 505 245 10 213 663 615 1106 7.20e-92 317
MS.gene49909.t1 AT4G16310 38.218 505 245 10 213 663 615 1106 7.20e-92 317
MS.gene49909.t1 AT4G16310 38.218 505 245 10 213 663 615 1106 7.20e-92 317
MS.gene49909.t1 AT1G65840 32.432 481 274 16 197 660 15 461 1.97e-55 199
MS.gene49909.t1 AT3G59050 34.025 482 270 17 198 664 17 465 6.91e-55 197
MS.gene49909.t1 AT2G43020 34.000 450 255 15 230 664 42 464 1.16e-53 194
MS.gene49909.t1 AT4G29720 27.037 540 292 20 214 663 3 530 2.18e-31 130
MS.gene49909.t1 AT5G13700 25.112 446 272 16 241 664 30 435 2.48e-25 110

Find 218 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGTTGAATCGCGATTT+TGG 0.135598 6.4:-58556087 MS.gene49909:CDS
CGCTTTGTACTGTGCCTTTA+GGG 0.146452 6.4:-58556965 MS.gene49909:CDS
CGAATTTGTCTATGGCTTAT+TGG 0.158377 6.4:-58557172 MS.gene49909:CDS
TCTTGTGGCTGCGGCGGATT+TGG 0.188970 6.4:-58557543 MS.gene49909:CDS
GCGCTTTGTACTGTGCCTTT+AGG 0.194066 6.4:-58556966 MS.gene49909:CDS
GAATTGGCATCTTGCTAATT+TGG 0.219090 6.4:-58557219 MS.gene49909:CDS
TATGTTGCTGTTGGATCTTC+AGG 0.223351 6.4:-58556531 MS.gene49909:CDS
TCAATACTTAGGGTTAAAAT+TGG 0.230929 6.4:-58556210 MS.gene49909:CDS
AGATTGTTACGGTGTCGTTT+TGG 0.232996 6.4:+58558239 None:intergenic
GGTCAGTTTAGTTGGGAAAA+AGG 0.251761 6.4:-58556064 MS.gene49909:CDS
AAGAGTGTTGATGTTCCTTT+AGG 0.261370 6.4:-58557308 MS.gene49909:CDS
TGAAACCTGACCTGAATTTC+GGG 0.264220 6.4:-58556281 MS.gene49909:CDS
GTGAAACCTGACCTGAATTT+CGG 0.266040 6.4:-58556282 MS.gene49909:CDS
TTGGGTGGAAGTGTTCTTAC+TGG 0.270102 6.4:-58557524 MS.gene49909:CDS
AGGATTCGGGTTGCTGAATA+AGG 0.282210 6.4:-58556871 MS.gene49909:CDS
GGCATTTCGTAGGGTTTATA+AGG 0.286059 6.4:-58557273 MS.gene49909:CDS
GGTGATCATTGTTTCATTCC+TGG 0.293333 6.4:-58557122 MS.gene49909:CDS
AATCGAATTACATTATTGTT+AGG 0.297551 6.4:-58557925 MS.gene49909:CDS
GAATTTGTCTATGGCTTATT+GGG 0.299575 6.4:-58557171 MS.gene49909:CDS
CTTGTGGCTGCGGCGGATTT+GGG 0.302997 6.4:-58557542 MS.gene49909:CDS
TGGTGCCGGGTTGGCGGGTT+TGG 0.308679 6.4:-58557687 MS.gene49909:CDS
TCTTATGTCGAATTTGTCTA+TGG 0.312805 6.4:-58557180 MS.gene49909:CDS
CAGAGAAGCTCCCGAAATTC+AGG 0.314383 6.4:+58556271 None:intergenic
TTGATTCTGAGGTTGATTCT+AGG 0.314623 6.4:-58557400 MS.gene49909:CDS
TCCGAAGGGGATTGTTGTTC+CGG 0.317671 6.4:-58556616 MS.gene49909:CDS
GTTTGGTTGATGTTGCTTAT+AGG 0.317936 6.4:-58557814 MS.gene49909:CDS
GAGCATGGTTATATTAATTT+CGG 0.320653 6.4:-58557782 MS.gene49909:CDS
GTCGATTCGGTCGGAACATA+AGG 0.321507 6.4:-58557837 MS.gene49909:CDS
GACGGGAGGGTGTTCTTTGC+TGG 0.323842 6.4:-58556474 MS.gene49909:CDS
TTTGATGGTGATGGTGGTGG+TGG 0.324059 6.4:-58557572 MS.gene49909:CDS
CTTGTTGTTGCTGTTGTTGT+TGG 0.324895 6.4:+58558176 None:intergenic
AAGAGAGGATGTTGTTGAAT+TGG 0.333502 6.4:-58557235 MS.gene49909:CDS
TCGCCGGAGAAGCTGCTCTT+AGG 0.336308 6.4:-58556704 MS.gene49909:CDS
TTGAATCTAGTTCAATACTT+AGG 0.338543 6.4:-58556221 MS.gene49909:CDS
GGTGATGGTGGTGGTGGGGA+TGG 0.341179 6.4:-58557566 MS.gene49909:CDS
AGAGGGAGTGTGATTGTTAT+TGG 0.351894 6.4:-58557707 MS.gene49909:CDS
GTCTATGGCTTATTGGGATC+AGG 0.360792 6.4:-58557165 MS.gene49909:CDS
CAATTCATAGGTTAGGATTC+GGG 0.362726 6.4:-58556884 MS.gene49909:CDS
AGTGTTCTTACTGGTGTTAA+TGG 0.367884 6.4:-58557515 MS.gene49909:CDS
TTTCGTGGTAGGGTAGGGTT+AGG 0.370277 6.4:+58558139 None:intergenic
CAGCTTAATGAAGCAGAAAA+TGG 0.371967 6.4:-58555988 MS.gene49909:CDS
GAACTAGATTCAAGATCATT+CGG 0.371980 6.4:+58556231 None:intergenic
TTCTTACTCTGAGGAAGATC+AGG 0.374652 6.4:+58556912 None:intergenic
TGTTGTTCCGGAGCCCGTTC+AGG 0.375878 6.4:-58556604 MS.gene49909:CDS
GATTCAAGATCATTCGGGTT+TGG 0.378278 6.4:+58556237 None:intergenic
ATTTGCCGCTTCATAAGGTT+AGG 0.384593 6.4:-58557460 MS.gene49909:CDS
AGCCACAAGAAGCGGGCCTC+CGG 0.384980 6.4:+58556731 None:intergenic
TGAATCTAGTTCAATACTTA+GGG 0.388262 6.4:-58556220 MS.gene49909:CDS
TTCTGACATTTGCGTATCAA+TGG 0.389537 6.4:+58558309 None:intergenic
GCAATTCATAGGTTAGGATT+CGG 0.391500 6.4:-58556885 MS.gene49909:CDS
GTGTTCTTACTGGTGTTAAT+GGG 0.393336 6.4:-58557514 MS.gene49909:CDS
GTTATTGGTGCCGGGTTGGC+GGG 0.401105 6.4:-58557692 MS.gene49909:CDS
TCTTATTCTTATGTTGCTGT+TGG 0.401437 6.4:-58556540 MS.gene49909:CDS
CTTCTTGTGGCTCTTGTCGC+CGG 0.408698 6.4:-58556720 MS.gene49909:CDS
AACTAGATTCAAGATCATTC+GGG 0.414661 6.4:+58556232 None:intergenic
AGGGTTTAAAGTTTGTATTT+TGG 0.415674 6.4:-58557639 MS.gene49909:CDS
ATTAGATTTGCCGCTTCATA+AGG 0.416276 6.4:-58557465 MS.gene49909:CDS
GATATACTTTCAGAGAGTAT+TGG 0.417231 6.4:-58556498 MS.gene49909:CDS
TGTTTGGTTGACTTATGATA+AGG 0.422760 6.4:-58557867 MS.gene49909:CDS
TGAGGTTGATTCTAGGGTTG+AGG 0.427964 6.4:-58557393 MS.gene49909:CDS
AAGGATGCAATTCATAGGTT+AGG 0.428067 6.4:-58556891 MS.gene49909:CDS
GGTAGGGTAGGGTTAGGGTT+TGG 0.428542 6.4:+58558145 None:intergenic
CGCCGTTGGAGTCTGTCAAA+AGG 0.429103 6.4:-58556668 MS.gene49909:CDS
TTGATGGTGATGGTGGTGGT+GGG 0.429726 6.4:-58557571 MS.gene49909:CDS
ACCCTACTGAAATTGCAATC+AGG 0.431945 6.4:+58558017 None:intergenic
TGGGGATGGTCTTGTGGCTG+CGG 0.432164 6.4:-58557552 MS.gene49909:CDS
GTTTCCTGTAGATTCTTTAA+CGG 0.432536 6.4:-58557996 MS.gene49909:CDS
TTGTTGTTGCTGTTGTTGTT+GGG 0.433511 6.4:+58558177 None:intergenic
ATGTTTGATGGTGATGGTGG+TGG 0.433708 6.4:-58557575 MS.gene49909:CDS
GGGGTACTGGTGTGTACTGA+TGG 0.436666 6.4:-58557011 MS.gene49909:CDS
TGTTATTGGTGCCGGGTTGG+CGG 0.438476 6.4:-58557693 MS.gene49909:CDS
TATAGCTATGCTTCTGTGTC+CGG 0.439518 6.4:-58556750 MS.gene49909:CDS
TCGGTCGGAACATAAGGGTT+TGG 0.440153 6.4:-58557831 MS.gene49909:CDS
TTCTGAGTTTAGCTCAGTGT+TGG 0.442111 6.4:+58558336 None:intergenic
AGAGTGTTGATGTTCCTTTA+GGG 0.447197 6.4:-58557307 MS.gene49909:CDS
GTAGGGATCGACCGGGTGGG+AGG 0.448094 6.4:-58557613 MS.gene49909:CDS
TGATGGTGATGGTGGTGGTG+GGG 0.454103 6.4:-58557570 MS.gene49909:CDS
TCGATTCGGTCGGAACATAA+GGG 0.456626 6.4:-58557836 MS.gene49909:CDS
TCTGACATTTGCGTATCAAT+GGG 0.458291 6.4:+58558310 None:intergenic
AATGCTCCATGCATTGTTGC+AGG 0.458661 6.4:+58556429 None:intergenic
GTTTGTTCGCGTGTTGGCTG+AGG 0.458763 6.4:-58557087 MS.gene49909:CDS
AAGACGAAGAGGATGTTTGA+TGG 0.462613 6.4:-58557587 MS.gene49909:CDS
TGTATTAAGTACGGAAGTGA+TGG 0.463104 6.4:-58557032 MS.gene49909:CDS
CGAGTACAGACTGCCTGAAC+GGG 0.463252 6.4:+58556591 None:intergenic
TGACCGAGGATTTGAGTATG+AGG 0.466769 6.4:-58556791 MS.gene49909:CDS
TGCATTGCTTTCGAAGAAGC+AGG 0.471890 6.4:-58556151 MS.gene49909:CDS
GCAGAAAATGGTCTTGTCCA+TGG 0.472749 6.4:-58555976 MS.gene49909:CDS
ATACTTAGGGTTAAAATTGG+AGG 0.474385 6.4:-58556207 MS.gene49909:CDS
TGGTGGTGGGGATGGTCTTG+TGG 0.474912 6.4:-58557558 MS.gene49909:CDS
ACAGTCCTCCCATAGAAAAT+CGG 0.475535 6.4:+58557059 None:intergenic
TGATTCTGAGGTTGATTCTA+GGG 0.476292 6.4:-58557399 MS.gene49909:CDS
AAACCTAAGAGCAGCTTCTC+CGG 0.481395 6.4:+58556701 None:intergenic
TATTAATTTCGGTGTTTCAC+CGG 0.481835 6.4:-58557771 MS.gene49909:CDS
TTTGGAAGGTAGGGATCGAC+CGG 0.483867 6.4:-58557621 MS.gene49909:CDS
GTCCGGAGGCCCGCTTCTTG+TGG 0.487113 6.4:-58556733 MS.gene49909:CDS
GGTGAAAACAATCGGTGGTT+CGG 0.487387 6.4:-58557951 MS.gene49909:CDS
GCCTCCAACGCTGTCCCTAA+AGG 0.487697 6.4:+58557293 None:intergenic
TGTTTGTCCTCTTTATATGC+CGG 0.487898 6.4:-58557435 MS.gene49909:CDS
GTAAGAAGGATGCAATTCAT+AGG 0.491494 6.4:-58556896 MS.gene49909:CDS
GTACGGAAGTGATGGGGTAC+TGG 0.492251 6.4:-58557024 MS.gene49909:CDS
GGTGGGAATATCGATACGTT+TGG 0.492909 6.4:-58556819 MS.gene49909:CDS
TCTTTCTTAAGAACCCCTAA+AGG 0.493042 6.4:+58556951 None:intergenic
TCCTTTAGGGACAGCGTTGG+AGG 0.493131 6.4:-58557294 MS.gene49909:CDS
GTGTGATTGTTATTGGTGCC+GGG 0.497179 6.4:-58557700 MS.gene49909:CDS
AGATTGAAGGAGACGAAAAT+CGG 0.497202 6.4:-58556113 MS.gene49909:CDS
TAGAGAGGGTTTGTAAGCTT+AGG 0.499527 6.4:-58557352 MS.gene49909:CDS
TGATCACCACCCATCTCATA+AGG 0.500642 6.4:+58557137 None:intergenic
GCAGCAGTTTCGTGCGGACA+TGG 0.500964 6.4:-58556988 MS.gene49909:CDS
TTCGTGGTAGGGTAGGGTTA+GGG 0.503684 6.4:+58558140 None:intergenic
GGAGATCAGATGTAAATGTT+TGG 0.504459 6.4:-58557883 MS.gene49909:CDS
TTTGCCGCTTCATAAGGTTA+GGG 0.505729 6.4:-58557459 MS.gene49909:CDS
CAGACTGCCTGAACGGGCTC+CGG 0.509810 6.4:+58556597 None:intergenic
GTATTAAGTACGGAAGTGAT+GGG 0.510925 6.4:-58557031 MS.gene49909:CDS
TCCTCCGTTAAAGAATCTAC+AGG 0.512209 6.4:+58557992 None:intergenic
CGACAAGAGCCACAAGAAGC+GGG 0.513712 6.4:+58556724 None:intergenic
TTTCCATCCGGCATATAAAG+AGG 0.514177 6.4:+58557428 None:intergenic
ATTGAGTTGAGTCAGATTGA+AGG 0.514975 6.4:-58556126 MS.gene49909:CDS
CAATGCATAAAGATAAAGAC+TGG 0.515438 6.4:+58556167 None:intergenic
TTCAGGCAGTCTGTACTCGA+TGG 0.522232 6.4:-58556587 MS.gene49909:CDS
TGGGAAGGATAGTTGTATCA+TGG 0.522562 6.4:-58555956 MS.gene49909:CDS
TTGTTGTTGGGAGGATGAAT+CGG 0.522762 6.4:+58558189 None:intergenic
CAGAAAATGGTCTTGTCCAT+GGG 0.522807 6.4:-58555975 MS.gene49909:CDS
CCCTACTGAAATTGCAATCA+GGG 0.522982 6.4:+58558018 None:intergenic
TCCGGAACAACAATCCCCTT+CGG 0.525102 6.4:+58556615 None:intergenic
CAGCGTTGGAGGCATTTCGT+AGG 0.525413 6.4:-58557283 MS.gene49909:CDS
GTTTGAGATGATGTCGCCGT+TGG 0.525621 6.4:-58556682 MS.gene49909:CDS
TTTGGAAAGGGATGTTGTTG+CGG 0.526010 6.4:+58558081 None:intergenic
AGCGTTGGAGGCATTTCGTA+GGG 0.529180 6.4:-58557282 MS.gene49909:CDS
AAGCTCCCGAAATTCAGGTC+AGG 0.529964 6.4:+58556276 None:intergenic
TCAGGATGATCCTTATGAGA+TGG 0.530816 6.4:-58557147 MS.gene49909:CDS
GGCAACCAAACCCGCCAACC+CGG 0.531009 6.4:+58557682 None:intergenic
GGATGGTCTTGTGGCTGCGG+CGG 0.531611 6.4:-58557549 MS.gene49909:CDS
TCAGGCAGTCTGTACTCGAT+GGG 0.534093 6.4:-58556586 MS.gene49909:CDS
TTTGTTCGCGTGTTGGCTGA+GGG 0.535278 6.4:-58557086 MS.gene49909:CDS
TGTGACGGTGGTTCCGATGA+GGG 0.537164 6.4:+58558286 None:intergenic
AGTGTGATTGTTATTGGTGC+CGG 0.540389 6.4:-58557701 MS.gene49909:CDS
TCCTGTAGATTCTTTAACGG+AGG 0.543302 6.4:-58557993 MS.gene49909:CDS
CCCTGATTGCAATTTCAGTA+GGG 0.543752 6.4:-58558018 MS.gene49909:CDS
GCCGTTGGAGTCTGTCAAAA+GGG 0.545041 6.4:-58556667 MS.gene49909:CDS
TGTTTAATAAGTTGTTAGAG+AGG 0.546125 6.4:-58557367 MS.gene49909:CDS
CAGGATGATCCTTATGAGAT+GGG 0.547234 6.4:-58557146 MS.gene49909:CDS
ACTGTGGAGTGTATTAAGTA+CGG 0.549350 6.4:-58557041 MS.gene49909:CDS
GCGACAAGAGCCACAAGAAG+CGG 0.549634 6.4:+58556723 None:intergenic
GTGGCTGCGGCGGATTTGGG+TGG 0.550218 6.4:-58557539 MS.gene49909:CDS
GCCCTGATTGCAATTTCAGT+AGG 0.550601 6.4:-58558019 MS.gene49909:CDS
GATTGTTATTGGTGCCGGGT+TGG 0.550853 6.4:-58557696 MS.gene49909:CDS
TAGGGATCGACCGGGTGGGA+GGG 0.552307 6.4:-58557612 MS.gene49909:CDS
CAGTACCCTGCAACAATGCA+TGG 0.555950 6.4:-58556435 MS.gene49909:CDS
ATAAGGCGGTGAAGTCGATT+CGG 0.556032 6.4:-58557850 MS.gene49909:CDS
TTTCAGAGAGTATTGGAGAC+GGG 0.556898 6.4:-58556491 MS.gene49909:CDS
GAGTTTAGCTCAGTGTTGGA+AGG 0.557445 6.4:+58558340 None:intergenic
GTTTAATAAGTTGTTAGAGA+GGG 0.558201 6.4:-58557366 MS.gene49909:CDS
TGTCCTCTTTATATGCCGGA+TGG 0.559990 6.4:-58557431 MS.gene49909:CDS
TGGGGTTGTGGTGATTCCGA+CGG 0.561467 6.4:+58558259 None:intergenic
TGATCTTCCTCAGAGTAAGA+AGG 0.563913 6.4:-58556910 MS.gene49909:CDS
GACCGAGGATTTGAGTATGA+GGG 0.565102 6.4:-58556790 MS.gene49909:CDS
ATCATTGTTTCATTCCTGGA+GGG 0.570638 6.4:-58557118 MS.gene49909:CDS
AGGTCTCAGCAACTTTATGT+TGG 0.572014 6.4:+58556011 None:intergenic
AGGATGTTTGATGGTGATGG+TGG 0.572599 6.4:-58557578 MS.gene49909:CDS
CAGAGAGTATTGGAGACGGG+AGG 0.575157 6.4:-58556488 MS.gene49909:CDS
TTCGTCTTAACCCTCCCACC+CGG 0.576628 6.4:+58557602 None:intergenic
TTGCTGAGGATAAAGAAGAG+AGG 0.577715 6.4:-58557250 MS.gene49909:CDS
TCGAGTACAGACTGCCTGAA+CGG 0.577795 6.4:+58556590 None:intergenic
TTAGGAATCATATTCTTGCA+CGG 0.578690 6.4:-58557907 MS.gene49909:CDS
ACCGAGGATTTGAGTATGAG+GGG 0.581726 6.4:-58556789 MS.gene49909:CDS
TTGTTGCTGTTGTTGTTGGG+AGG 0.586183 6.4:+58558180 None:intergenic
AAGAGGATGTTTGATGGTGA+TGG 0.586715 6.4:-58557581 MS.gene49909:CDS
GGGTACTGGTGTGTACTGAT+GGG 0.589277 6.4:-58557010 MS.gene49909:CDS
AGTGTTGGAAGGTGAGTGCA+TGG 0.590530 6.4:+58558351 None:intergenic
TGAGACGTTTGTTCGCGTGT+TGG 0.592879 6.4:-58557093 MS.gene49909:CDS
TCCCCTCATACTCAAATCCT+CGG 0.593722 6.4:+58556788 None:intergenic
GGTTGTGGTGATTCCGACGG+TGG 0.594206 6.4:+58558262 None:intergenic
GAGGGTGTTCTTTGCTGGAG+AGG 0.596154 6.4:-58556469 MS.gene49909:CDS
GATTCCGACGGTGGTTGTGA+CGG 0.597156 6.4:+58558271 None:intergenic
GGAAGAAATTGAAGCGAATG+TGG 0.600552 6.4:-58557972 MS.gene49909:CDS
TGTTCCTTTAGGGACAGCGT+TGG 0.602218 6.4:-58557297 MS.gene49909:CDS
AAATGGTCTTGTCCATGGGA+AGG 0.604796 6.4:-58555971 MS.gene49909:CDS
GCGAATGTGGTGAAAACAAT+CGG 0.607371 6.4:-58557959 MS.gene49909:CDS
GGAGTCTGTCAAAAGGGTGT+TGG 0.607885 6.4:-58556661 MS.gene49909:CDS
GAAGGTAGGGATCGACCGGG+TGG 0.607969 6.4:-58557617 MS.gene49909:CDS
CTTTCAGAGAGTATTGGAGA+CGG 0.608296 6.4:-58556492 MS.gene49909:CDS
ACAAACGTCTCATTCCCTCC+AGG 0.610632 6.4:+58557104 None:intergenic
AAGGTAGGGATCGACCGGGT+GGG 0.612210 6.4:-58557616 MS.gene49909:CDS
TGATACAACTATCCTTCCCA+TGG 0.613592 6.4:+58555959 None:intergenic
TAGGGTTTATAAGGTTGCTG+AGG 0.615237 6.4:-58557264 MS.gene49909:CDS
AGAGAGTATTGGAGACGGGA+GGG 0.615836 6.4:-58556487 MS.gene49909:CDS
TGGAAAATGTGTTGATTCTG+AGG 0.616208 6.4:-58557411 MS.gene49909:CDS
TTGTGACGGTGGTTCCGATG+AGG 0.617066 6.4:+58558285 None:intergenic
GCAAATGTCAGAACCCTCAT+CGG 0.618394 6.4:-58558299 MS.gene49909:CDS
TTGTTGGGAGGATGAATCGG+AGG 0.619106 6.4:+58558192 None:intergenic
GGCGGTGAAGTCGATTCGGT+CGG 0.623990 6.4:-58557846 MS.gene49909:CDS
ACATCCCTAACCTTATGAAG+CGG 0.624599 6.4:+58557455 None:intergenic
GATCATTGTTTCATTCCTGG+AGG 0.626617 6.4:-58557119 MS.gene49909:CDS
TAGGCAAGCTATGATTGATG+AGG 0.627755 6.4:-58557333 MS.gene49909:CDS
GCTTTGTACTGTGCCTTTAG+GGG 0.628229 6.4:-58556964 MS.gene49909:CDS
GGAAAAGATGAATTCGCGTA+CGG 0.634759 6.4:-58556564 MS.gene49909:CDS
TCCGACGGTGGTTGTGACGG+TGG 0.635828 6.4:+58558274 None:intergenic
TCTTACTCTGAGGAAGATCA+GGG 0.636544 6.4:+58556913 None:intergenic
AGCTATGCTTCTGTGTCCGG+AGG 0.638434 6.4:-58556747 MS.gene49909:CDS
AATGCATAAAGATAAAGACT+GGG 0.646834 6.4:+58556168 None:intergenic
TGTCTAGCAAGAACACCAAG+TGG 0.648112 6.4:+58557488 None:intergenic
ACCACCGTCACAACCACCGT+CGG 0.649079 6.4:-58558275 MS.gene49909:CDS
GGTGTTAATGGGAATCCACT+TGG 0.651647 6.4:-58557503 MS.gene49909:CDS
ATGCATGGAGCATTCATGAG+TGG 0.656805 6.4:-58556420 MS.gene49909:CDS
TACGTTTGGTCATTTGACCG+AGG 0.661211 6.4:-58556805 MS.gene49909:CDS
ATGCATAAAGATAAAGACTG+GGG 0.664278 6.4:+58556169 None:intergenic
ATTGCATCCTTCTTACTCTG+AGG 0.666273 6.4:+58556903 None:intergenic
CAGGCAGTCTGTACTCGATG+GGG 0.668068 6.4:-58556585 MS.gene49909:CDS
ATGCTCCATGCATTGTTGCA+GGG 0.670835 6.4:+58556430 None:intergenic
TGCATAAAGATAAAGACTGG+GGG 0.678482 6.4:+58556170 None:intergenic
GTGGGAGGGTTAAGACGAAG+AGG 0.679245 6.4:-58557598 MS.gene49909:CDS
TATTAAGTACGGAAGTGATG+GGG 0.689138 6.4:-58557030 MS.gene49909:CDS
TGATGGGCAGCAGTTTCGTG+CGG 0.691444 6.4:-58556994 MS.gene49909:CDS
TTGGTTGACTTATGATAAGG+CGG 0.699477 6.4:-58557864 MS.gene49909:CDS
AATGTGGTGAAAACAATCGG+TGG 0.708462 6.4:-58557956 MS.gene49909:CDS
TTGGAAGGTAGGGATCGACC+GGG 0.714334 6.4:-58557620 MS.gene49909:CDS
GGAATCATATTCTTGCACGG+TGG 0.740398 6.4:-58557904 MS.gene49909:CDS
GATGATCCTTATGAGATGGG+TGG 0.750776 6.4:-58557143 MS.gene49909:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCGAATTACATTATTGTT+AGG - chr6.4:58556372-58556391 MS.gene49909:CDS 20.0%
!!! AAGAAAAATAGTTCTTTTGA+TGG - chr6.4:58556560-58556579 MS.gene49909:CDS 20.0%
!!! ACATTTTAAGAGTTACAAAA+CGG - chr6.4:58557917-58557936 MS.gene49909:CDS 20.0%
!!! TTTAAAGTTTGTATTTTGGA+AGG - chr6.4:58556662-58556681 MS.gene49909:CDS 20.0%
! AATGCATAAAGATAAAGACT+GGG + chr6.4:58558132-58558151 None:intergenic 25.0%
! GAGCATGGTTATATTAATTT+CGG - chr6.4:58556515-58556534 MS.gene49909:CDS 25.0%
! GTTTAATAAGTTGTTAGAGA+GGG - chr6.4:58556931-58556950 MS.gene49909:CDS 25.0%
! TCAATACTTAGGGTTAAAAT+TGG - chr6.4:58558087-58558106 MS.gene49909:CDS 25.0%
! TGTTTAATAAGTTGTTAGAG+AGG - chr6.4:58556930-58556949 MS.gene49909:CDS 25.0%
!! TGAATCTAGTTCAATACTTA+GGG - chr6.4:58558077-58558096 MS.gene49909:CDS 25.0%
!! TTGAATCTAGTTCAATACTT+AGG - chr6.4:58558076-58558095 MS.gene49909:CDS 25.0%
!!! AGGGTTTAAAGTTTGTATTT+TGG - chr6.4:58556658-58556677 MS.gene49909:CDS 25.0%
!!! ATGTTTTTTGTTGTGTTAGA+TGG + chr6.4:58557961-58557980 None:intergenic 25.0%
AACTAGATTCAAGATCATTC+GGG + chr6.4:58558068-58558087 None:intergenic 30.0%
ATACTTAGGGTTAAAATTGG+AGG - chr6.4:58558090-58558109 MS.gene49909:CDS 30.0%
ATGCATAAAGATAAAGACTG+GGG + chr6.4:58558131-58558150 None:intergenic 30.0%
CAATGCATAAAGATAAAGAC+TGG + chr6.4:58558133-58558152 None:intergenic 30.0%
GAACTAGATTCAAGATCATT+CGG + chr6.4:58558069-58558088 None:intergenic 30.0%
GAATTTGTCTATGGCTTATT+GGG - chr6.4:58557126-58557145 MS.gene49909:CDS 30.0%
GTTTCCTGTAGATTCTTTAA+CGG - chr6.4:58556301-58556320 MS.gene49909:CDS 30.0%
TCTTATGTCGAATTTGTCTA+TGG - chr6.4:58557117-58557136 MS.gene49909:CDS 30.0%
TCTTATTCTTATGTTGCTGT+TGG - chr6.4:58557757-58557776 MS.gene49909:CDS 30.0%
TTAGGAATCATATTCTTGCA+CGG - chr6.4:58556390-58556409 MS.gene49909:CDS 30.0%
! AAAATGTTGAATCGCGATTT+TGG - chr6.4:58558210-58558229 MS.gene49909:CDS 30.0%
! AAATGTTGAATCGCGATTTT+GGG - chr6.4:58558211-58558230 MS.gene49909:CDS 30.0%
! AAGGATATTTTTCATCCGAA+GGG - chr6.4:58557667-58557686 MS.gene49909:CDS 30.0%
! GATATACTTTCAGAGAGTAT+TGG - chr6.4:58557799-58557818 MS.gene49909:CDS 30.0%
! TGTTTGGTTGACTTATGATA+AGG - chr6.4:58556430-58556449 MS.gene49909:CDS 30.0%
! TTTTTCTTCGCTTTAATCTC+CGG + chr6.4:58556548-58556567 None:intergenic 30.0%
!! AAGTTTGTATTTTGGAAGGT+AGG - chr6.4:58556666-58556685 MS.gene49909:CDS 30.0%
!! AGTTTGTATTTTGGAAGGTA+GGG - chr6.4:58556667-58556686 MS.gene49909:CDS 30.0%
!! TATAGGTTTTTGATTGAGCA+TGG - chr6.4:58556500-58556519 MS.gene49909:CDS 30.0%
!! TATTAATTTCGGTGTTTCAC+CGG - chr6.4:58556526-58556545 MS.gene49909:CDS 30.0%
AAGAGAGGATGTTGTTGAAT+TGG - chr6.4:58557062-58557081 MS.gene49909:CDS 35.0%
AAGGATGCAATTCATAGGTT+AGG - chr6.4:58557406-58557425 MS.gene49909:CDS 35.0%
ACTGTGGAGTGTATTAAGTA+CGG - chr6.4:58557256-58557275 MS.gene49909:CDS 35.0%
AGATTGAAGGAGACGAAAAT+CGG - chr6.4:58558184-58558203 MS.gene49909:CDS 35.0%
ATCATTGTTTCATTCCTGGA+GGG - chr6.4:58557179-58557198 MS.gene49909:CDS 35.0%
CAATTCATAGGTTAGGATTC+GGG - chr6.4:58557413-58557432 MS.gene49909:CDS 35.0%
CACAACAAAAAACATCGATG+AGG - chr6.4:58557966-58557985 MS.gene49909:CDS 35.0%
CAGCTTAATGAAGCAGAAAA+TGG - chr6.4:58558309-58558328 MS.gene49909:CDS 35.0%
CGAATTTGTCTATGGCTTAT+TGG - chr6.4:58557125-58557144 MS.gene49909:CDS 35.0%
GAATTGGCATCTTGCTAATT+TGG - chr6.4:58557078-58557097 MS.gene49909:CDS 35.0%
GCAATTCATAGGTTAGGATT+CGG - chr6.4:58557412-58557431 MS.gene49909:CDS 35.0%
GGAGATCAGATGTAAATGTT+TGG - chr6.4:58556414-58556433 MS.gene49909:CDS 35.0%
GTAAGAAGGATGCAATTCAT+AGG - chr6.4:58557401-58557420 MS.gene49909:CDS 35.0%
GTATTAAGTACGGAAGTGAT+GGG - chr6.4:58557266-58557285 MS.gene49909:CDS 35.0%
GTCAGTTTAGTTGGGAAAAA+GGG - chr6.4:58558234-58558253 MS.gene49909:CDS 35.0%
TAAAAACACTAATTGTCGCG+CGG + chr6.4:58556639-58556658 None:intergenic 35.0%
TATTAAGTACGGAAGTGATG+GGG - chr6.4:58557267-58557286 MS.gene49909:CDS 35.0%
TCTGACATTTGCGTATCAAT+GGG + chr6.4:58555990-58556009 None:intergenic 35.0%
TCTTTCTTAAGAACCCCTAA+AGG + chr6.4:58557349-58557368 None:intergenic 35.0%
TGCATAAAGATAAAGACTGG+GGG + chr6.4:58558130-58558149 None:intergenic 35.0%
TGTATTAAGTACGGAAGTGA+TGG - chr6.4:58557265-58557284 MS.gene49909:CDS 35.0%
TGTTTGTCCTCTTTATATGC+CGG - chr6.4:58556862-58556881 MS.gene49909:CDS 35.0%
TTCTGACATTTGCGTATCAA+TGG + chr6.4:58555991-58556010 None:intergenic 35.0%
! AATGTTGAATCGCGATTTTG+GGG - chr6.4:58558212-58558231 MS.gene49909:CDS 35.0%
! AGGATATTTTTCATCCGAAG+GGG - chr6.4:58557668-58557687 MS.gene49909:CDS 35.0%
! AGTGTTCTTACTGGTGTTAA+TGG - chr6.4:58556782-58556801 MS.gene49909:CDS 35.0%
! ATTAGATTTGCCGCTTCATA+AGG - chr6.4:58556832-58556851 MS.gene49909:CDS 35.0%
! CTGTTTCCGACTAATTTTTG+GGG - chr6.4:58557457-58557476 MS.gene49909:CDS 35.0%
! CTTTTGATGGAATTGAGAGA+GGG - chr6.4:58556573-58556592 MS.gene49909:CDS 35.0%
! GAAGGATATTTTTCATCCGA+AGG - chr6.4:58557666-58557685 MS.gene49909:CDS 35.0%
! GAATCAACACATTTTCCATC+CGG + chr6.4:58556884-58556903 None:intergenic 35.0%
! GTGTTCTTACTGGTGTTAAT+GGG - chr6.4:58556783-58556802 MS.gene49909:CDS 35.0%
! GTTTGGTTGATGTTGCTTAT+AGG - chr6.4:58556483-58556502 MS.gene49909:CDS 35.0%
! TCTTTTGATGGAATTGAGAG+AGG - chr6.4:58556572-58556591 MS.gene49909:CDS 35.0%
! TTGGTTGACTTATGATAAGG+CGG - chr6.4:58556433-58556452 MS.gene49909:CDS 35.0%
! TTGTTGTTGCTGTTGTTGTT+GGG + chr6.4:58556123-58556142 None:intergenic 35.0%
! TTTTCTGCTTCATTAAGCTG+AGG + chr6.4:58558309-58558328 None:intergenic 35.0%
!! AAGAGTGTTGATGTTCCTTT+AGG - chr6.4:58556989-58557008 MS.gene49909:CDS 35.0%
!! AGAGTGTTGATGTTCCTTTA+GGG - chr6.4:58556990-58557009 MS.gene49909:CDS 35.0%
!! ATTGAGTTGAGTCAGATTGA+AGG - chr6.4:58558171-58558190 MS.gene49909:CDS 35.0%
!! CGCGACAATTAGTGTTTTTA+GGG - chr6.4:58556639-58556658 MS.gene49909:CDS 35.0%
!! GCTGTTTCCGACTAATTTTT+GGG - chr6.4:58557456-58557475 MS.gene49909:CDS 35.0%
!! TGATTCTGAGGTTGATTCTA+GGG - chr6.4:58556898-58556917 MS.gene49909:CDS 35.0%
!! TGGAAAATGTGTTGATTCTG+AGG - chr6.4:58556886-58556905 MS.gene49909:CDS 35.0%
!! TTGATTCTGAGGTTGATTCT+AGG - chr6.4:58556897-58556916 MS.gene49909:CDS 35.0%
!!! AATTTTGAGGTGGGTTTTCA+GGG + chr6.4:58556085-58556104 None:intergenic 35.0%
!!! ATTTTGGGGTCAGTTTAGTT+GGG - chr6.4:58558226-58558245 MS.gene49909:CDS 35.0%
!!! TGCTGTTTCCGACTAATTTT+TGG - chr6.4:58557455-58557474 MS.gene49909:CDS 35.0%
AAGACGAAGAGGATGTTTGA+TGG - chr6.4:58556710-58556729 MS.gene49909:CDS 40.0%
AAGATAAAGACTGGGGGAAT+TGG + chr6.4:58558124-58558143 None:intergenic 40.0%
AATGTGGTGAAAACAATCGG+TGG - chr6.4:58556341-58556360 MS.gene49909:CDS 40.0%
ACAGTCCTCCCATAGAAAAT+CGG + chr6.4:58557241-58557260 None:intergenic 40.0%
ACATCCCTAACCTTATGAAG+CGG + chr6.4:58556845-58556864 None:intergenic 40.0%
ACCCTACTGAAATTGCAATC+AGG + chr6.4:58556283-58556302 None:intergenic 40.0%
AGGTCTCAGCAACTTTATGT+TGG + chr6.4:58558289-58558308 None:intergenic 40.0%
ATTGCATCCTTCTTACTCTG+AGG + chr6.4:58557397-58557416 None:intergenic 40.0%
CAGGATGATCCTTATGAGAT+GGG - chr6.4:58557151-58557170 MS.gene49909:CDS 40.0%
CCCTACTGAAATTGCAATCA+GGG + chr6.4:58556282-58556301 None:intergenic 40.0%
CCCTGATTGCAATTTCAGTA+GGG - chr6.4:58556279-58556298 MS.gene49909:CDS 40.0%
GATCATTGTTTCATTCCTGG+AGG - chr6.4:58557178-58557197 MS.gene49909:CDS 40.0%
GCGAATGTGGTGAAAACAAT+CGG - chr6.4:58556338-58556357 MS.gene49909:CDS 40.0%
GGAAAAGATGAATTCGCGTA+CGG - chr6.4:58557733-58557752 MS.gene49909:CDS 40.0%
GGAAGAAATTGAAGCGAATG+TGG - chr6.4:58556325-58556344 MS.gene49909:CDS 40.0%
GGCATTTCGTAGGGTTTATA+AGG - chr6.4:58557024-58557043 MS.gene49909:CDS 40.0%
GGTCAGTTTAGTTGGGAAAA+AGG - chr6.4:58558233-58558252 MS.gene49909:CDS 40.0%
GGTGATCATTGTTTCATTCC+TGG - chr6.4:58557175-58557194 MS.gene49909:CDS 40.0%
GTGAAACCTGACCTGAATTT+CGG - chr6.4:58558015-58558034 MS.gene49909:CDS 40.0%
TAGAGAGGGTTTGTAAGCTT+AGG - chr6.4:58556945-58556964 MS.gene49909:CDS 40.0%
TAGGCAAGCTATGATTGATG+AGG - chr6.4:58556964-58556983 MS.gene49909:CDS 40.0%
TAGGGTTTATAAGGTTGCTG+AGG - chr6.4:58557033-58557052 MS.gene49909:CDS 40.0%
TATAGCTATGCTTCTGTGTC+CGG - chr6.4:58557547-58557566 MS.gene49909:CDS 40.0%
TCAGGATGATCCTTATGAGA+TGG - chr6.4:58557150-58557169 MS.gene49909:CDS 40.0%
TCCTCCGTTAAAGAATCTAC+AGG + chr6.4:58556308-58556327 None:intergenic 40.0%
TCCTGTAGATTCTTTAACGG+AGG - chr6.4:58556304-58556323 MS.gene49909:CDS 40.0%
TGAAACCTGACCTGAATTTC+GGG - chr6.4:58558016-58558035 MS.gene49909:CDS 40.0%
TGATACAACTATCCTTCCCA+TGG + chr6.4:58558341-58558360 None:intergenic 40.0%
TGATCTTCCTCAGAGTAAGA+AGG - chr6.4:58557387-58557406 MS.gene49909:CDS 40.0%
TGGGAAGGATAGTTGTATCA+TGG - chr6.4:58558341-58558360 MS.gene49909:CDS 40.0%
TTCCCACCCCAAAAATTAGT+CGG + chr6.4:58557466-58557485 None:intergenic 40.0%
TTGCTGAGGATAAAGAAGAG+AGG - chr6.4:58557047-58557066 MS.gene49909:CDS 40.0%
TTTCCATCCGGCATATAAAG+AGG + chr6.4:58556872-58556891 None:intergenic 40.0%
TTTGGAAAGGGATGTTGTTG+CGG + chr6.4:58556219-58556238 None:intergenic 40.0%
! AGAGGGAGTGTGATTGTTAT+TGG - chr6.4:58556590-58556609 MS.gene49909:CDS 40.0%
! AGGGTCTTCCGATTTTCTAT+GGG - chr6.4:58557230-58557249 MS.gene49909:CDS 40.0%
! AGTGTGATTGTTATTGGTGC+CGG - chr6.4:58556596-58556615 MS.gene49909:CDS 40.0%
! ATTTGCCGCTTCATAAGGTT+AGG - chr6.4:58556837-58556856 MS.gene49909:CDS 40.0%
! GATGAATCGGAGGAATTTTG+AGG + chr6.4:58556098-58556117 None:intergenic 40.0%
! GATTCAAGATCATTCGGGTT+TGG + chr6.4:58558063-58558082 None:intergenic 40.0%
! GCGCGACAATTAGTGTTTTT+AGG - chr6.4:58556638-58556657 MS.gene49909:CDS 40.0%
! TATGTTGCTGTTGGATCTTC+AGG - chr6.4:58557766-58557785 MS.gene49909:CDS 40.0%
! TCTTACTCTGAGGAAGATCA+GGG + chr6.4:58557387-58557406 None:intergenic 40.0%
! TTCTGAGTTTAGCTCAGTGT+TGG + chr6.4:58555964-58555983 None:intergenic 40.0%
! TTCTTACTCTGAGGAAGATC+AGG + chr6.4:58557388-58557407 None:intergenic 40.0%
! TTGTTGTTGGGAGGATGAAT+CGG + chr6.4:58556111-58556130 None:intergenic 40.0%
! TTTGCCGCTTCATAAGGTTA+GGG - chr6.4:58556838-58556857 MS.gene49909:CDS 40.0%
!! AAGAGGATGTTTGATGGTGA+TGG - chr6.4:58556716-58556735 MS.gene49909:CDS 40.0%
!! CAGAAAATGGTCTTGTCCAT+GGG - chr6.4:58558322-58558341 MS.gene49909:CDS 40.0%
!! CTTGTTGTTGCTGTTGTTGT+TGG + chr6.4:58556124-58556143 None:intergenic 40.0%
!! CTTTCAGAGAGTATTGGAGA+CGG - chr6.4:58557805-58557824 MS.gene49909:CDS 40.0%
!! GTTTTCAGGGGAGATTGTTA+CGG + chr6.4:58556072-58556091 None:intergenic 40.0%
!! TTTCAGAGAGTATTGGAGAC+GGG - chr6.4:58557806-58557825 MS.gene49909:CDS 40.0%
!! TTTCCGACTAATTTTTGGGG+TGG - chr6.4:58557460-58557479 MS.gene49909:CDS 40.0%
!!! AAGGGTGTTGGATGTTTTGA+AGG - chr6.4:58557648-58557667 MS.gene49909:CDS 40.0%
!!! AATCGGAGGAATTTTGAGGT+GGG + chr6.4:58556094-58556113 None:intergenic 40.0%
!!! AGATTGTTACGGTGTCGTTT+TGG + chr6.4:58556061-58556080 None:intergenic 40.0%
!!! ATTGTTACGGTGTCGTTTTG+GGG + chr6.4:58556059-58556078 None:intergenic 40.0%
!!! ATTTTGAGGTGGGTTTTCAG+GGG + chr6.4:58556084-58556103 None:intergenic 40.0%
!!! GAATTTTGAGGTGGGTTTTC+AGG + chr6.4:58556086-58556105 None:intergenic 40.0%
!!! GATTGTTACGGTGTCGTTTT+GGG + chr6.4:58556060-58556079 None:intergenic 40.0%
!!! GATTTTGGGGTCAGTTTAGT+TGG - chr6.4:58558225-58558244 MS.gene49909:CDS 40.0%
!!! GTTTTTGCGGGTTTTGGAAA+GGG + chr6.4:58556231-58556250 None:intergenic 40.0%
!!! TTCCGACTAATTTTTGGGGT+GGG - chr6.4:58557461-58557480 MS.gene49909:CDS 40.0%
AAACCTAAGAGCAGCTTCTC+CGG + chr6.4:58557599-58557618 None:intergenic 45.0%
AATGCTCCATGCATTGTTGC+AGG + chr6.4:58557871-58557890 None:intergenic 45.0%
ACCGAGGATTTGAGTATGAG+GGG - chr6.4:58557508-58557527 MS.gene49909:CDS 45.0%
ATAAGGCGGTGAAGTCGATT+CGG - chr6.4:58556447-58556466 MS.gene49909:CDS 45.0%
ATGCTCCATGCATTGTTGCA+GGG + chr6.4:58557870-58557889 None:intergenic 45.0%
CGCTTTGTACTGTGCCTTTA+GGG - chr6.4:58557332-58557351 MS.gene49909:CDS 45.0%
GACCGAGGATTTGAGTATGA+GGG - chr6.4:58557507-58557526 MS.gene49909:CDS 45.0%
GATGATCCTTATGAGATGGG+TGG - chr6.4:58557154-58557173 MS.gene49909:CDS 45.0%
GCAAATGTCAGAACCCTCAT+CGG - chr6.4:58555998-58556017 MS.gene49909:CDS 45.0%
GCCCTGATTGCAATTTCAGT+AGG - chr6.4:58556278-58556297 MS.gene49909:CDS 45.0%
GCTTTGTACTGTGCCTTTAG+GGG - chr6.4:58557333-58557352 MS.gene49909:CDS 45.0%
GGAATCATATTCTTGCACGG+TGG - chr6.4:58556393-58556412 MS.gene49909:CDS 45.0%
GGTGAAAACAATCGGTGGTT+CGG - chr6.4:58556346-58556365 MS.gene49909:CDS 45.0%
GGTGGGAATATCGATACGTT+TGG - chr6.4:58557478-58557497 MS.gene49909:CDS 45.0%
GGTGTTAATGGGAATCCACT+TGG - chr6.4:58556794-58556813 MS.gene49909:CDS 45.0%
GTCTATGGCTTATTGGGATC+AGG - chr6.4:58557132-58557151 MS.gene49909:CDS 45.0%
TACGTTTGGTCATTTGACCG+AGG - chr6.4:58557492-58557511 MS.gene49909:CDS 45.0%
TCCCCTCATACTCAAATCCT+CGG + chr6.4:58557512-58557531 None:intergenic 45.0%
TGACCGAGGATTTGAGTATG+AGG - chr6.4:58557506-58557525 MS.gene49909:CDS 45.0%
TGATCACCACCCATCTCATA+AGG + chr6.4:58557163-58557182 None:intergenic 45.0%
TGCATTGCTTTCGAAGAAGC+AGG - chr6.4:58558146-58558165 MS.gene49909:CDS 45.0%
TGTCCTCTTTATATGCCGGA+TGG - chr6.4:58556866-58556885 MS.gene49909:CDS 45.0%
TGTCTAGCAAGAACACCAAG+TGG + chr6.4:58556812-58556831 None:intergenic 45.0%
! ACCCTTTTGACAGACTCCAA+CGG + chr6.4:58557634-58557653 None:intergenic 45.0%
! ATGCATGGAGCATTCATGAG+TGG - chr6.4:58557877-58557896 MS.gene49909:CDS 45.0%
! GAGGGTCTTCCGATTTTCTA+TGG - chr6.4:58557229-58557248 MS.gene49909:CDS 45.0%
! GAGTTTAGCTCAGTGTTGGA+AGG + chr6.4:58555960-58555979 None:intergenic 45.0%
! GATTTTCTATGGGAGGACTG+TGG - chr6.4:58557240-58557259 MS.gene49909:CDS 45.0%
! GTCTTCCGATTTTCTATGGG+AGG - chr6.4:58557233-58557252 MS.gene49909:CDS 45.0%
! GTGTGATTGTTATTGGTGCC+GGG - chr6.4:58556597-58556616 MS.gene49909:CDS 45.0%
! TTGTTGCTGTTGTTGTTGGG+AGG + chr6.4:58556120-58556139 None:intergenic 45.0%
!! AAATGGTCTTGTCCATGGGA+AGG - chr6.4:58558326-58558345 MS.gene49909:CDS 45.0%
!! AGGATGTTTGATGGTGATGG+TGG - chr6.4:58556719-58556738 MS.gene49909:CDS 45.0%
!! AGGATTCGGGTTGCTGAATA+AGG - chr6.4:58557426-58557445 MS.gene49909:CDS 45.0%
!! ATGTTTGATGGTGATGGTGG+TGG - chr6.4:58556722-58556741 MS.gene49909:CDS 45.0%
!! GAATCGGAGGAATTTTGAGG+TGG + chr6.4:58556095-58556114 None:intergenic 45.0%
!! GCAGAAAATGGTCTTGTCCA+TGG - chr6.4:58558321-58558340 MS.gene49909:CDS 45.0%
!! TCGATTCGGTCGGAACATAA+GGG - chr6.4:58556461-58556480 MS.gene49909:CDS 45.0%
!! TGAGGTTGATTCTAGGGTTG+AGG - chr6.4:58556904-58556923 MS.gene49909:CDS 45.0%
!! TTGGGTGGAAGTGTTCTTAC+TGG - chr6.4:58556773-58556792 MS.gene49909:CDS 45.0%
!!! CGTTTTTGCGGGTTTTGGAA+AGG + chr6.4:58556232-58556251 None:intergenic 45.0%
!!! CTTTAGCGACGTCGTTTTTG+CGG + chr6.4:58556244-58556263 None:intergenic 45.0%
!!! TTTAGCGACGTCGTTTTTGC+GGG + chr6.4:58556243-58556262 None:intergenic 45.0%
AAGCTCCCGAAATTCAGGTC+AGG + chr6.4:58558024-58558043 None:intergenic 50.0%
ACAAACGTCTCATTCCCTCC+AGG + chr6.4:58557196-58557215 None:intergenic 50.0%
CAGAGAAGCTCCCGAAATTC+AGG + chr6.4:58558029-58558048 None:intergenic 50.0%
CAGTACCCTGCAACAATGCA+TGG - chr6.4:58557862-58557881 MS.gene49909:CDS 50.0%
GCCGTTGGAGTCTGTCAAAA+GGG - chr6.4:58557630-58557649 MS.gene49909:CDS 50.0%
GCGCTTTGTACTGTGCCTTT+AGG - chr6.4:58557331-58557350 MS.gene49909:CDS 50.0%
TCAGGCAGTCTGTACTCGAT+GGG - chr6.4:58557711-58557730 MS.gene49909:CDS 50.0%
TCCGGAACAACAATCCCCTT+CGG + chr6.4:58557685-58557704 None:intergenic 50.0%
TCGAGTACAGACTGCCTGAA+CGG + chr6.4:58557710-58557729 None:intergenic 50.0%
TCGGTCGGAACATAAGGGTT+TGG - chr6.4:58556466-58556485 MS.gene49909:CDS 50.0%
TGAGACGTTTGTTCGCGTGT+TGG - chr6.4:58557204-58557223 MS.gene49909:CDS 50.0%
TTCAGGCAGTCTGTACTCGA+TGG - chr6.4:58557710-58557729 MS.gene49909:CDS 50.0%
TTCGTGGTAGGGTAGGGTTA+GGG + chr6.4:58556160-58556179 None:intergenic 50.0%
TTGTTGGGAGGATGAATCGG+AGG + chr6.4:58556108-58556127 None:intergenic 50.0%
TTTCGTGGTAGGGTAGGGTT+AGG + chr6.4:58556161-58556180 None:intergenic 50.0%
TTTGGAAGGTAGGGATCGAC+CGG - chr6.4:58556676-58556695 MS.gene49909:CDS 50.0%
! GGAGTCTGTCAAAAGGGTGT+TGG - chr6.4:58557636-58557655 MS.gene49909:CDS 50.0%
! GTTTGAGATGATGTCGCCGT+TGG - chr6.4:58557615-58557634 MS.gene49909:CDS 50.0%
! TCCGAAGGGGATTGTTGTTC+CGG - chr6.4:58557681-58557700 MS.gene49909:CDS 50.0%
! TGTTCCTTTAGGGACAGCGT+TGG - chr6.4:58557000-58557019 MS.gene49909:CDS 50.0%
!! ACGACGTCGTTTTCGTGGTA+GGG + chr6.4:58556171-58556190 None:intergenic 50.0%
!! AGAGAGTATTGGAGACGGGA+GGG - chr6.4:58557810-58557829 MS.gene49909:CDS 50.0%
!! AGCGTTGGAGGCATTTCGTA+GGG - chr6.4:58557015-58557034 MS.gene49909:CDS 50.0%
!! GATTGTTATTGGTGCCGGGT+TGG - chr6.4:58556601-58556620 MS.gene49909:CDS 50.0%
!! GGGTACTGGTGTGTACTGAT+GGG - chr6.4:58557287-58557306 MS.gene49909:CDS 50.0%
!! GTCGATTCGGTCGGAACATA+AGG - chr6.4:58556460-58556479 MS.gene49909:CDS 50.0%
!! GTCGTTTTCGTGGTAGGGTA+GGG + chr6.4:58556166-58556185 None:intergenic 50.0%
!! TTGATGGTGATGGTGGTGGT+GGG - chr6.4:58556726-58556745 MS.gene49909:CDS 50.0%
!! TTTGATGGTGATGGTGGTGG+TGG - chr6.4:58556725-58556744 MS.gene49909:CDS 50.0%
!! TTTGTTCGCGTGTTGGCTGA+GGG - chr6.4:58557211-58557230 MS.gene49909:CDS 50.0%
!!! GACGTCGTTTTTGCGGGTTT+TGG + chr6.4:58556237-58556256 None:intergenic 50.0%
AGCTATGCTTCTGTGTCCGG+AGG - chr6.4:58557550-58557569 MS.gene49909:CDS 55.0%
CAGGCAGTCTGTACTCGATG+GGG - chr6.4:58557712-58557731 MS.gene49909:CDS 55.0%
CGACAAGAGCCACAAGAAGC+GGG + chr6.4:58557576-58557595 None:intergenic 55.0%
CGAGTACAGACTGCCTGAAC+GGG + chr6.4:58557709-58557728 None:intergenic 55.0%
CGCCGTTGGAGTCTGTCAAA+AGG - chr6.4:58557629-58557648 MS.gene49909:CDS 55.0%
CTTCTTGTGGCTCTTGTCGC+CGG - chr6.4:58557577-58557596 MS.gene49909:CDS 55.0%
GATTCCGACGGTGGTTGTGA+CGG + chr6.4:58556029-58556048 None:intergenic 55.0%
GCGACAAGAGCCACAAGAAG+CGG + chr6.4:58557577-58557596 None:intergenic 55.0%
GGTAGGGTAGGGTTAGGGTT+TGG + chr6.4:58556155-58556174 None:intergenic 55.0%
GTGGGAGGGTTAAGACGAAG+AGG - chr6.4:58556699-58556718 MS.gene49909:CDS 55.0%
TGGGGTTGTGGTGATTCCGA+CGG + chr6.4:58556041-58556060 None:intergenic 55.0%
TGTGACGGTGGTTCCGATGA+GGG + chr6.4:58556014-58556033 None:intergenic 55.0%
TTCGTCTTAACCCTCCCACC+CGG + chr6.4:58556698-58556717 None:intergenic 55.0%
TTGGAAGGTAGGGATCGACC+GGG - chr6.4:58556677-58556696 MS.gene49909:CDS 55.0%
TTGTGACGGTGGTTCCGATG+AGG + chr6.4:58556015-58556034 None:intergenic 55.0%
! GTACGGAAGTGATGGGGTAC+TGG - chr6.4:58557273-58557292 MS.gene49909:CDS 55.0%
! TCCTTTAGGGACAGCGTTGG+AGG - chr6.4:58557003-58557022 MS.gene49909:CDS 55.0%
! TGATGGGCAGCAGTTTCGTG+CGG - chr6.4:58557303-58557322 MS.gene49909:CDS 55.0%
!! CAGAGAGTATTGGAGACGGG+AGG - chr6.4:58557809-58557828 MS.gene49909:CDS 55.0%
!! CAGCGTTGGAGGCATTTCGT+AGG - chr6.4:58557014-58557033 MS.gene49909:CDS 55.0%
!! CGTCGTTTTCGTGGTAGGGT+AGG + chr6.4:58556167-58556186 None:intergenic 55.0%
!! GACGACGTCGTTTTCGTGGT+AGG + chr6.4:58556172-58556191 None:intergenic 55.0%
!! GAGGGTGTTCTTTGCTGGAG+AGG - chr6.4:58557828-58557847 MS.gene49909:CDS 55.0%
!! GGGGTACTGGTGTGTACTGA+TGG - chr6.4:58557286-58557305 MS.gene49909:CDS 55.0%
!! GTTTGTTCGCGTGTTGGCTG+AGG - chr6.4:58557210-58557229 MS.gene49909:CDS 55.0%
!! TGATGGTGATGGTGGTGGTG+GGG - chr6.4:58556727-58556746 MS.gene49909:CDS 55.0%
!! TGTTATTGGTGCCGGGTTGG+CGG - chr6.4:58556604-58556623 MS.gene49909:CDS 55.0%
!! TTGCGACGACGTCGTTTTCG+TGG + chr6.4:58556176-58556195 None:intergenic 55.0%
!!! ACGGTGTCGTTTTGGGGTTG+TGG + chr6.4:58556053-58556072 None:intergenic 55.0%
AAGGTAGGGATCGACCGGGT+GGG - chr6.4:58556681-58556700 MS.gene49909:CDS 60.0%
ACCACCGTCACAACCACCGT+CGG - chr6.4:58556022-58556041 MS.gene49909:CDS 60.0%
GCAGCAGTTTCGTGCGGACA+TGG - chr6.4:58557309-58557328 MS.gene49909:CDS 60.0%
GCCTCCAACGCTGTCCCTAA+AGG + chr6.4:58557007-58557026 None:intergenic 60.0%
GGTTGTGGTGATTCCGACGG+TGG + chr6.4:58556038-58556057 None:intergenic 60.0%
TCGCCGGAGAAGCTGCTCTT+AGG - chr6.4:58557593-58557612 MS.gene49909:CDS 60.0%
TGTTGTTCCGGAGCCCGTTC+AGG - chr6.4:58557693-58557712 MS.gene49909:CDS 60.0%
! CTTGTGGCTGCGGCGGATTT+GGG - chr6.4:58556755-58556774 MS.gene49909:CDS 60.0%
! TCTTGTGGCTGCGGCGGATT+TGG - chr6.4:58556754-58556773 MS.gene49909:CDS 60.0%
!! GACGGGAGGGTGTTCTTTGC+TGG - chr6.4:58557823-58557842 MS.gene49909:CDS 60.0%
!! GGCGGTGAAGTCGATTCGGT+CGG - chr6.4:58556451-58556470 MS.gene49909:CDS 60.0%
!! GTTATTGGTGCCGGGTTGGC+GGG - chr6.4:58556605-58556624 MS.gene49909:CDS 60.0%
!! TGGGGATGGTCTTGTGGCTG+CGG - chr6.4:58556745-58556764 MS.gene49909:CDS 60.0%
!! TGGTGGTGGGGATGGTCTTG+TGG - chr6.4:58556739-58556758 MS.gene49909:CDS 60.0%
AGCCACAAGAAGCGGGCCTC+CGG + chr6.4:58557569-58557588 None:intergenic 65.0%
GAAGGTAGGGATCGACCGGG+TGG - chr6.4:58556680-58556699 MS.gene49909:CDS 65.0%
GGCAACCAAACCCGCCAACC+CGG + chr6.4:58556618-58556637 None:intergenic 65.0%
TAGGGATCGACCGGGTGGGA+GGG - chr6.4:58556685-58556704 MS.gene49909:CDS 65.0%
TCCGACGGTGGTTGTGACGG+TGG + chr6.4:58556026-58556045 None:intergenic 65.0%
! CAGACTGCCTGAACGGGCTC+CGG + chr6.4:58557703-58557722 None:intergenic 65.0%
!! GGATGGTCTTGTGGCTGCGG+CGG - chr6.4:58556748-58556767 MS.gene49909:CDS 65.0%
!! GGTGATGGTGGTGGTGGGGA+TGG - chr6.4:58556731-58556750 MS.gene49909:CDS 65.0%
GTAGGGATCGACCGGGTGGG+AGG - chr6.4:58556684-58556703 MS.gene49909:CDS 70.0%
GTCCGGAGGCCCGCTTCTTG+TGG - chr6.4:58557564-58557583 MS.gene49909:CDS 70.0%
! GTGGCTGCGGCGGATTTGGG+TGG - chr6.4:58556758-58556777 MS.gene49909:CDS 70.0%
!! TGGTGCCGGGTTGGCGGGTT+TGG - chr6.4:58556610-58556629 MS.gene49909:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 58555948 58558371 58555948 ID=MS.gene49909
chr6.4 mRNA 58555948 58558371 58555948 ID=MS.gene49909.t1;Parent=MS.gene49909
chr6.4 exon 58555948 58558371 58555948 ID=MS.gene49909.t1.exon1;Parent=MS.gene49909.t1
chr6.4 CDS 58555948 58558371 58555948 ID=cds.MS.gene49909.t1;Parent=MS.gene49909.t1
Gene Sequence

>MS.gene49909

ATGCACTCACCTTCCAACACTGAGCTAAACTCAGAACAACCCATTGATACGCAAATGTCAGAACCCTCATCGGAACCACCGTCACAACCACCGTCGGAATCACCACAACCCCAAAACGACACCGTAACAATCTCCCCTGAAAACCCACCTCAAAATTCCTCCGATTCATCCTCCCAACAACAACAGCAACAACAAGAACAAGATCCAAACCCTAACCCTACCCTACCACGAAAACGACGTCGTCGCAAGAAATTCTTCACAGAATTAACCGCAACAACATCCCTTTCCAAAACCCGCAAAAACGACGTCGCTAAAGACTGTGATGACGAAGCCCTGATTGCAATTTCAGTAGGGTTTCCTGTAGATTCTTTAACGGAGGAAGAAATTGAAGCGAATGTGGTGAAAACAATCGGTGGTTCGGAGCAATCGAATTACATTATTGTTAGGAATCATATTCTTGCACGGTGGAGATCAGATGTAAATGTTTGGTTGACTTATGATAAGGCGGTGAAGTCGATTCGGTCGGAACATAAGGGTTTGGTTGATGTTGCTTATAGGTTTTTGATTGAGCATGGTTATATTAATTTCGGTGTTTCACCGGAGATTAAAGCGAAGAAAAATAGTTCTTTTGATGGAATTGAGAGAGGGAGTGTGATTGTTATTGGTGCCGGGTTGGCGGGTTTGGTTGCCGCGCGACAATTAGTGTTTTTAGGGTTTAAAGTTTGTATTTTGGAAGGTAGGGATCGACCGGGTGGGAGGGTTAAGACGAAGAGGATGTTTGATGGTGATGGTGGTGGTGGGGATGGTCTTGTGGCTGCGGCGGATTTGGGTGGAAGTGTTCTTACTGGTGTTAATGGGAATCCACTTGGTGTTCTTGCTAGACAATTAGATTTGCCGCTTCATAAGGTTAGGGATGTTTGTCCTCTTTATATGCCGGATGGAAAATGTGTTGATTCTGAGGTTGATTCTAGGGTTGAGGTTTTGTTTAATAAGTTGTTAGAGAGGGTTTGTAAGCTTAGGCAAGCTATGATTGATGAGGTTAAGAGTGTTGATGTTCCTTTAGGGACAGCGTTGGAGGCATTTCGTAGGGTTTATAAGGTTGCTGAGGATAAAGAAGAGAGGATGTTGTTGAATTGGCATCTTGCTAATTTGGAGTATGCAAATGCTACTCTTATGTCGAATTTGTCTATGGCTTATTGGGATCAGGATGATCCTTATGAGATGGGTGGTGATCATTGTTTCATTCCTGGAGGGAATGAGACGTTTGTTCGCGTGTTGGCTGAGGGTCTTCCGATTTTCTATGGGAGGACTGTGGAGTGTATTAAGTACGGAAGTGATGGGGTACTGGTGTGTACTGATGGGCAGCAGTTTCGTGCGGACATGGCGCTTTGTACTGTGCCTTTAGGGGTTCTTAAGAAAGAATCGATTAAGTTTGTCCCTGATCTTCCTCAGAGTAAGAAGGATGCAATTCATAGGTTAGGATTCGGGTTGCTGAATAAGGTTGTGATGCTGTTTCCGACTAATTTTTGGGGTGGGAATATCGATACGTTTGGTCATTTGACCGAGGATTTGAGTATGAGGGGAGAGTTTTTTCTGTTCTATAGCTATGCTTCTGTGTCCGGAGGCCCGCTTCTTGTGGCTCTTGTCGCCGGAGAAGCTGCTCTTAGGTTTGAGATGATGTCGCCGTTGGAGTCTGTCAAAAGGGTGTTGGATGTTTTGAAGGATATTTTTCATCCGAAGGGGATTGTTGTTCCGGAGCCCGTTCAGGCAGTCTGTACTCGATGGGGAAAAGATGAATTCGCGTACGGATCTTATTCTTATGTTGCTGTTGGATCTTCAGGAGATGATTATGATATACTTTCAGAGAGTATTGGAGACGGGAGGGTGTTCTTTGCTGGAGAGGCAACTAGCAAACAGTACCCTGCAACAATGCATGGAGCATTCATGAGTGGAATGAGAGAAGCTGCAAACATTTTAAGAGTTACAAAACGGAAGTCTCAAAGTTCAATGCCATCTAACACAACAAAAAACATCGATGAGGAGACTGACGATTTAGACAAACTATTTGTGAAACCTGACCTGAATTTCGGGAGCTTCTCTGCTTTGTTTAATCCAAACCCGAATGATCTTGAATCTAGTTCAATACTTAGGGTTAAAATTGGAGGAGCTGTATCCAATTCCCCCAGTCTTTATCTTTATGCATTGCTTTCGAAGAAGCAGGTCATTGAGTTGAGTCAGATTGAAGGAGACGAAAATCGGATGAAAATGTTGAATCGCGATTTTGGGGTCAGTTTAGTTGGGAAAAAGGGTTTAAGTAGCACTGCTGAATCTCTTATTGCCAACATAAAGTTGCTGAGACCTCAGCTTAATGAAGCAGAAAATGGTCTTGTCCATGGGAAGGATAGTTGTATCATGGAAGAATAG
Protein sequence

>MS.gene49909.t1

MHSPSNTELNSEQPIDTQMSEPSSEPPSQPPSESPQPQNDTVTISPENPPQNSSDSSSQQQQQQQEQDPNPNPTLPRKRRRRKKFFTELTATTSLSKTRKNDVAKDCDDEALIAISVGFPVDSLTEEEIEANVVKTIGGSEQSNYIIVRNHILARWRSDVNVWLTYDKAVKSIRSEHKGLVDVAYRFLIEHGYINFGVSPEIKAKKNSSFDGIERGSVIVIGAGLAGLVAARQLVFLGFKVCILEGRDRPGGRVKTKRMFDGDGGGGDGLVAAADLGGSVLTGVNGNPLGVLARQLDLPLHKVRDVCPLYMPDGKCVDSEVDSRVEVLFNKLLERVCKLRQAMIDEVKSVDVPLGTALEAFRRVYKVAEDKEERMLLNWHLANLEYANATLMSNLSMAYWDQDDPYEMGGDHCFIPGGNETFVRVLAEGLPIFYGRTVECIKYGSDGVLVCTDGQQFRADMALCTVPLGVLKKESIKFVPDLPQSKKDAIHRLGFGLLNKVVMLFPTNFWGGNIDTFGHLTEDLSMRGEFFLFYSYASVSGGPLLVALVAGEAALRFEMMSPLESVKRVLDVLKDIFHPKGIVVPEPVQAVCTRWGKDEFAYGSYSYVAVGSSGDDYDILSESIGDGRVFFAGEATSKQYPATMHGAFMSGMREAANILRVTKRKSQSSMPSNTTKNIDEETDDLDKLFVKPDLNFGSFSALFNPNPNDLESSSILRVKIGGAVSNSPSLYLYALLSKKQVIELSQIEGDENRMKMLNRDFGVSLVGKKGLSSTAESLIANIKLLRPQLNEAENGLVHGKDSCIMEE