Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50051.t1 | XP_013456377.1 | 91.3 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.00E-48 | 201.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50051.t1 | Q8W453 | 41.6 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 1.1e-10 | 67.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50051.t1 | I3SWL0 | 91.3 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.4e-48 | 201.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051439 | MS.gene50051 | 0.811557 | 6.60E-51 | -1.69E-46 |
MS.gene053108 | MS.gene50051 | 0.814004 | 1.92E-51 | -1.69E-46 |
MS.gene056675 | MS.gene50051 | 0.859373 | 4.33E-63 | -1.69E-46 |
MS.gene05960 | MS.gene50051 | 0.875595 | 2.72E-68 | -1.69E-46 |
MS.gene060291 | MS.gene50051 | 0.810884 | 9.23E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50051.t1 | MTR_4g069220 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.59e-68 | 200 |
MS.gene50051.t1 | MTR_4g069170 | 74.038 | 104 | 27 | 0 | 1 | 104 | 1 | 104 | 1.05e-53 | 163 |
MS.gene50051.t1 | MTR_4g069200 | 56.190 | 105 | 44 | 2 | 1 | 104 | 1 | 104 | 3.39e-38 | 124 |
MS.gene50051.t1 | MTR_4g069210 | 43.810 | 105 | 51 | 2 | 1 | 105 | 1 | 97 | 2.45e-22 | 86.7 |
MS.gene50051.t1 | MTR_7g052640 | 41.748 | 103 | 57 | 1 | 2 | 104 | 5 | 104 | 6.54e-21 | 80.5 |
MS.gene50051.t1 | MTR_5g094210 | 33.654 | 104 | 60 | 4 | 2 | 104 | 7 | 102 | 1.21e-11 | 56.6 |
MS.gene50051.t1 | MTR_3g055250 | 36.667 | 90 | 49 | 3 | 7 | 96 | 4 | 85 | 2.08e-11 | 56.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50051.t1 | AT5G48485 | 41.558 | 77 | 42 | 1 | 28 | 104 | 29 | 102 | 2.27e-14 | 63.5 |
MS.gene50051.t1 | AT5G48490 | 36.634 | 101 | 60 | 2 | 5 | 104 | 4 | 101 | 3.56e-14 | 63.2 |
Find 29 sgRNAs with CRISPR-Local
Find 26 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGGGTTGCTTTCTTTCTA+TGG | 0.215569 | 4.2:-37407665 | MS.gene50051:CDS |
CTATGTCGTTATAAGGATTC+AGG | 0.249484 | 4.2:-37407683 | MS.gene50051:CDS |
TCCTGTTAACTGTAAGCTTA+TGG | 0.254280 | 4.2:-37407615 | MS.gene50051:CDS |
TCAATGCCTATGTCGTTATA+AGG | 0.293667 | 4.2:-37407690 | MS.gene50051:CDS |
AATACCATGATGTTGGTTAA+TGG | 0.374528 | 4.2:-37407839 | MS.gene50051:CDS |
AGTGGTGACAATTCTGTTAA+TGG | 0.378651 | 4.2:-37407761 | MS.gene50051:CDS |
TCCATAAGCTTACAGTTAAC+AGG | 0.382556 | 4.2:+37407614 | None:intergenic |
GGAAGTTCCATGGCTTGGTT+AGG | 0.427875 | 4.2:+37407635 | None:intergenic |
ATTAACCAACATCATGGTAT+TGG | 0.470830 | 4.2:+37407841 | None:intergenic |
TAGGCATTGAAGATCAGCTT+TGG | 0.482864 | 4.2:+37407703 | None:intergenic |
TAACAGGAAGTTCCATGGCT+TGG | 0.486774 | 4.2:+37407630 | None:intergenic |
TATGATTGTGGCGATGTTGT+TGG | 0.507427 | 4.2:-37407870 | MS.gene50051:CDS |
GCCATCTGATGCTTGCTGCT+CGG | 0.514604 | 4.2:-37407732 | MS.gene50051:CDS |
TATGTCGTTATAAGGATTCA+GGG | 0.530226 | 4.2:-37407682 | MS.gene50051:CDS |
CTGAATCCTTATAACGACAT+AGG | 0.550946 | 4.2:+37407684 | None:intergenic |
AGAGATGGAGGCATACAAGC+AGG | 0.551353 | 4.2:-37407894 | None:intergenic |
ACAGTTAACAGGAAGTTCCA+TGG | 0.568806 | 4.2:+37407625 | None:intergenic |
CTGACCATTAACCAACATCA+TGG | 0.570185 | 4.2:+37407835 | None:intergenic |
GCCGAGCAGCAAGCATCAGA+TGG | 0.582470 | 4.2:+37407731 | None:intergenic |
CATGACAAAACAAGGACTGA+AGG | 0.588836 | 4.2:-37407801 | MS.gene50051:CDS |
GAATTGTCACCACTCACATA+CGG | 0.589033 | 4.2:+37407770 | None:intergenic |
ATACAAGCAGGTTATGATTG+TGG | 0.602790 | 4.2:-37407882 | MS.gene50051:CDS |
CAACATCATGGTATTGGCAA+TGG | 0.605291 | 4.2:+37407847 | None:intergenic |
CATTGCCAATACCATGATGT+TGG | 0.609484 | 4.2:-37407846 | MS.gene50051:CDS |
TTATGTCACATGACAAAACA+AGG | 0.627195 | 4.2:-37407809 | MS.gene50051:CDS |
TATTGATCCTAACCAAGCCA+TGG | 0.632800 | 4.2:-37407642 | MS.gene50051:CDS |
AACCACATGACTAGTAGCAG+TGG | 0.639755 | 4.2:+37407585 | None:intergenic |
ACATGACTAGTAGCAGTGGA+AGG | 0.673463 | 4.2:+37407589 | None:intergenic |
GCATGCGAGCCGTATGTGAG+TGG | 0.699980 | 4.2:-37407779 | MS.gene50051:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATTAACCAACATCATGGTAT+TGG | + | chr4.2:37407647-37407666 | None:intergenic | 30.0% | |
TATGTCGTTATAAGGATTCA+GGG | - | chr4.2:37407803-37407822 | MS.gene50051:CDS | 30.0% | |
TTATGTCACATGACAAAACA+AGG | - | chr4.2:37407676-37407695 | MS.gene50051:CDS | 30.0% | |
! | AATACCATGATGTTGGTTAA+TGG | - | chr4.2:37407646-37407665 | MS.gene50051:CDS | 30.0% |
AGTGGTGACAATTCTGTTAA+TGG | - | chr4.2:37407724-37407743 | MS.gene50051:CDS | 35.0% | |
ATACAAGCAGGTTATGATTG+TGG | - | chr4.2:37407603-37407622 | MS.gene50051:CDS | 35.0% | |
CTATGTCGTTATAAGGATTC+AGG | - | chr4.2:37407802-37407821 | MS.gene50051:CDS | 35.0% | |
CTGAATCCTTATAACGACAT+AGG | + | chr4.2:37407804-37407823 | None:intergenic | 35.0% | |
TCAATGCCTATGTCGTTATA+AGG | - | chr4.2:37407795-37407814 | MS.gene50051:CDS | 35.0% | |
TCCATAAGCTTACAGTTAAC+AGG | + | chr4.2:37407874-37407893 | None:intergenic | 35.0% | |
TCCTGTTAACTGTAAGCTTA+TGG | - | chr4.2:37407870-37407889 | MS.gene50051:CDS | 35.0% | |
ACAGTTAACAGGAAGTTCCA+TGG | + | chr4.2:37407863-37407882 | None:intergenic | 40.0% | |
CATGACAAAACAAGGACTGA+AGG | - | chr4.2:37407684-37407703 | MS.gene50051:CDS | 40.0% | |
CATTGCCAATACCATGATGT+TGG | - | chr4.2:37407639-37407658 | MS.gene50051:CDS | 40.0% | |
CTGACCATTAACCAACATCA+TGG | + | chr4.2:37407653-37407672 | None:intergenic | 40.0% | |
GAATTGTCACCACTCACATA+CGG | + | chr4.2:37407718-37407737 | None:intergenic | 40.0% | |
TATGATTGTGGCGATGTTGT+TGG | - | chr4.2:37407615-37407634 | MS.gene50051:CDS | 40.0% | |
TATTGATCCTAACCAAGCCA+TGG | - | chr4.2:37407843-37407862 | MS.gene50051:CDS | 40.0% | |
! | TCAGGGTTGCTTTCTTTCTA+TGG | - | chr4.2:37407820-37407839 | MS.gene50051:CDS | 40.0% |
!! | CAACATCATGGTATTGGCAA+TGG | + | chr4.2:37407641-37407660 | None:intergenic | 40.0% |
!! | TAGGCATTGAAGATCAGCTT+TGG | + | chr4.2:37407785-37407804 | None:intergenic | 40.0% |
TAACAGGAAGTTCCATGGCT+TGG | + | chr4.2:37407858-37407877 | None:intergenic | 45.0% | |
!! | GGAAGTTCCATGGCTTGGTT+AGG | + | chr4.2:37407853-37407872 | None:intergenic | 50.0% |
! | GCCATCTGATGCTTGCTGCT+CGG | - | chr4.2:37407753-37407772 | MS.gene50051:CDS | 55.0% |
GCATGCGAGCCGTATGTGAG+TGG | - | chr4.2:37407706-37407725 | MS.gene50051:CDS | 60.0% | |
GCCGAGCAGCAAGCATCAGA+TGG | + | chr4.2:37407757-37407776 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 37407595 | 37407912 | 37407595 | ID=MS.gene50051 |
chr4.2 | mRNA | 37407595 | 37407912 | 37407595 | ID=MS.gene50051.t1;Parent=MS.gene50051 |
chr4.2 | exon | 37407595 | 37407912 | 37407595 | ID=MS.gene50051.t1.exon1;Parent=MS.gene50051.t1 |
chr4.2 | CDS | 37407595 | 37407912 | 37407595 | ID=cds.MS.gene50051.t1;Parent=MS.gene50051.t1 |
Gene Sequence |
Protein sequence |