Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50291.t1 | XP_003605066.2 | 87.4 | 293 | 33 | 2 | 1 | 293 | 1 | 289 | 4.20E-120 | 441 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50291.t1 | O14045 | 39.5 | 195 | 109 | 2 | 93 | 287 | 43 | 228 | 1.1e-31 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50291.t1 | G7JDD5 | 87.4 | 293 | 33 | 2 | 1 | 293 | 1 | 289 | 3.0e-120 | 441.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058749 | MS.gene50291 | 0.811657 | 6.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50291.t1 | MTR_4g023500 | 93.197 | 294 | 14 | 3 | 1 | 293 | 1 | 289 | 0.0 | 514 |
| MS.gene50291.t1 | MTR_4g084670 | 87.109 | 256 | 20 | 2 | 41 | 293 | 1 | 246 | 8.83e-158 | 439 |
| MS.gene50291.t1 | MTR_4g023500 | 90.734 | 259 | 17 | 4 | 1 | 258 | 1 | 253 | 1.57e-152 | 427 |
| MS.gene50291.t1 | MTR_4g023500 | 95.074 | 203 | 10 | 0 | 91 | 293 | 16 | 218 | 1.80e-142 | 400 |
| MS.gene50291.t1 | MTR_4g023500 | 96.970 | 198 | 6 | 0 | 96 | 293 | 9 | 206 | 2.58e-141 | 396 |
| MS.gene50291.t1 | MTR_4g084670 | 83.710 | 221 | 22 | 3 | 41 | 258 | 1 | 210 | 2.61e-124 | 353 |
| MS.gene50291.t1 | MTR_4g084670 | 84.772 | 197 | 17 | 2 | 41 | 234 | 1 | 187 | 4.61e-112 | 322 |
| MS.gene50291.t1 | MTR_4g023500 | 91.667 | 168 | 13 | 1 | 91 | 258 | 16 | 182 | 1.44e-108 | 313 |
| MS.gene50291.t1 | MTR_2g029020 | 91.176 | 34 | 3 | 0 | 111 | 144 | 35 | 68 | 2.93e-15 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50291.t1 | AT2G45330 | 78.922 | 204 | 43 | 0 | 90 | 293 | 83 | 286 | 3.59e-117 | 338 |
| MS.gene50291.t1 | AT2G45330 | 78.922 | 204 | 43 | 0 | 90 | 293 | 86 | 289 | 3.98e-117 | 338 |
| MS.gene50291.t1 | AT5G23600 | 75.000 | 208 | 52 | 0 | 86 | 293 | 5 | 212 | 4.17e-114 | 328 |
Find 70 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCCTCATAGAAGAAAA+TGG | 0.273190 | 4.3:-74787342 | MS.gene50291:CDS |
| GGCGGTGGTGGTGGTGGAAG+TGG | 0.290107 | 4.3:-74788854 | MS.gene50291:CDS |
| AAAGGAATGGGCTGTCTTCC+AGG | 0.291853 | 4.3:+74783146 | None:intergenic |
| CTTTCAGCTGAAGAATTTCC+AGG | 0.315199 | 4.3:-74785738 | MS.gene50291:intron |
| CTGAGTTGAAATTAAATATC+AGG | 0.350766 | 4.3:-74788376 | MS.gene50291:CDS |
| CAGGCCATGATTCTATCTTC+TGG | 0.359568 | 4.3:+74783165 | None:intergenic |
| AGAGGCCGTGGTGGCGGTGG+TGG | 0.369360 | 4.3:-74788866 | MS.gene50291:CDS |
| GGCCGTGGTGGCGGTGGTGG+TGG | 0.389349 | 4.3:-74788863 | MS.gene50291:CDS |
| CGATTGTTGTCCATTGGAGT+TGG | 0.397284 | 4.3:+74790112 | None:intergenic |
| TCTTGATGTTAGAAAAGCTT+TGG | 0.397728 | 4.3:-74784536 | MS.gene50291:CDS |
| CCCACACTATTGATGACATT+AGG | 0.398306 | 4.3:-74788280 | MS.gene50291:CDS |
| TTCTATCTTCTGGAAATACT+TGG | 0.416001 | 4.3:+74783175 | None:intergenic |
| CGTGGTGGCGGTGGTGGTGG+TGG | 0.419734 | 4.3:-74788860 | MS.gene50291:CDS |
| TTACCGTGGTTGTGTGGCCT+TGG | 0.421226 | 4.3:+74787298 | None:intergenic |
| CCACACTATTGATGACATTA+GGG | 0.435097 | 4.3:-74788279 | MS.gene50291:CDS |
| TCAGCCTCATAGAAGAAAAT+GGG | 0.436487 | 4.3:-74787341 | MS.gene50291:CDS |
| GCGGTGGTGGTGGTGGAAGT+GGG | 0.447641 | 4.3:-74788853 | MS.gene50291:CDS |
| GGAAGTGGGCCAAGTGTCTC+AGG | 0.448714 | 4.3:-74788839 | MS.gene50291:CDS |
| TGGGACATACAAACGGAACT+TGG | 0.466157 | 4.3:-74785422 | MS.gene50291:CDS |
| AAGGATAAAATTGATGCTCT+TGG | 0.474328 | 4.3:-74788815 | MS.gene50291:CDS |
| AGAACAAGAGGCCGTGGTGG+CGG | 0.480231 | 4.3:-74788872 | MS.gene50291:CDS |
| AATTCTTCAGCTGAAAGGAT+TGG | 0.481880 | 4.3:+74785744 | None:intergenic |
| ACAAGAGGCCGTGGTGGCGG+TGG | 0.484029 | 4.3:-74788869 | MS.gene50291:CDS |
| GAAGAGAGACACGTGGATGA+AGG | 0.494671 | 4.3:+74790167 | None:intergenic |
| TTGTCCATTGGAGTTGGAGG+TGG | 0.503423 | 4.3:+74790118 | None:intergenic |
| TTGGACTCGATTCTAGCATC+TGG | 0.506939 | 4.3:-74785403 | MS.gene50291:CDS |
| CTTATTACTTCTCCATCTGT+TGG | 0.510272 | 4.3:+74785334 | None:intergenic |
| GGCAGTTCTGGCAATGGCAG+AGG | 0.510311 | 4.3:-74788926 | MS.gene50291:intron |
| TGATGTTAGAAAAGCTTTGG+AGG | 0.518715 | 4.3:-74784533 | MS.gene50291:CDS |
| GTGGCGCGATTGTTGTCCAT+TGG | 0.519545 | 4.3:+74790106 | None:intergenic |
| CTGGAAATTCTTCAGCTGAA+AGG | 0.519696 | 4.3:+74785739 | None:intergenic |
| TTGCATGTTCATTTCTCTCG+TGG | 0.520604 | 4.3:-74785361 | MS.gene50291:CDS |
| CAATATGCAGTTTGTGTGCA+TGG | 0.523280 | 4.3:-74785442 | MS.gene50291:intron |
| TTGTTGTCCATTGGAGTTGG+AGG | 0.526126 | 4.3:+74790115 | None:intergenic |
| TGACAACAAGGTGATCTTGA+CGG | 0.526281 | 4.3:-74783222 | MS.gene50291:CDS |
| TTAAATTAATTACCTTGGAG+TGG | 0.526398 | 4.3:+74790087 | None:intergenic |
| TTATCCTTTCCTGAGACACT+TGG | 0.528866 | 4.3:+74788830 | None:intergenic |
| TCTCGTGGTTTACCAACAGA+TGG | 0.530628 | 4.3:-74785346 | MS.gene50291:CDS |
| CAGAAGATAGAATCATGGCC+TGG | 0.530960 | 4.3:-74783164 | MS.gene50291:CDS |
| GTTCTGGCAATGGCAGAGGA+AGG | 0.532546 | 4.3:-74788922 | MS.gene50291:CDS |
| ATAAAATTGATGCTCTTGGT+AGG | 0.543363 | 4.3:-74788811 | MS.gene50291:CDS |
| CCCTAATGTCATCAATAGTG+TGG | 0.543979 | 4.3:+74788279 | None:intergenic |
| GTGTGCATGGGACATACAAA+CGG | 0.549606 | 4.3:-74785429 | MS.gene50291:CDS |
| GATGTTAGAAAAGCTTTGGA+GGG | 0.554599 | 4.3:-74784532 | MS.gene50291:intron |
| AAATTAAATATCAGGAGTGA+TGG | 0.556084 | 4.3:-74788368 | MS.gene50291:CDS |
| ATCTTCTGGAAATACTTGGA+TGG | 0.562560 | 4.3:+74783179 | None:intergenic |
| AATAATAGAGAAAGAACAAG+AGG | 0.563293 | 4.3:-74788884 | MS.gene50291:CDS |
| TGTTCCACCTCCAACTCCAA+TGG | 0.565291 | 4.3:-74790122 | MS.gene50291:CDS |
| CACCACCACCACCGCCACCA+CGG | 0.569806 | 4.3:+74788861 | None:intergenic |
| TTTGTGGGCAGTTCTGGCAA+TGG | 0.580929 | 4.3:-74788932 | MS.gene50291:intron |
| AGAGAAAGAACAAGAGGCCG+TGG | 0.586983 | 4.3:-74788878 | MS.gene50291:CDS |
| ATTTCCAGAAGATAGAATCA+TGG | 0.588014 | 4.3:-74783169 | MS.gene50291:CDS |
| ACAACAATCGCGCCACTCCA+AGG | 0.592974 | 4.3:-74790099 | MS.gene50291:intron |
| CCTAATGTCATCAATAGTGT+GGG | 0.596418 | 4.3:+74788280 | None:intergenic |
| TGGGCCAAGTGTCTCAGGAA+AGG | 0.600331 | 4.3:-74788834 | MS.gene50291:CDS |
| ACAGATGGAGAAGTAATAAG+TGG | 0.603164 | 4.3:-74785331 | MS.gene50291:intron |
| TTCTGGCAATGGCAGAGGAA+GGG | 0.615370 | 4.3:-74788921 | MS.gene50291:CDS |
| AACAAGGTGATCTTGACGGA+AGG | 0.618679 | 4.3:-74783218 | MS.gene50291:CDS |
| AATATGCAGTTTGTGTGCAT+GGG | 0.648440 | 4.3:-74785441 | MS.gene50291:intron |
| AGTTGGAGGTGGAACAGAGG+AGG | 0.652301 | 4.3:+74790129 | None:intergenic |
| GTGGATGAAGGAGATTGCAA+TGG | 0.658272 | 4.3:+74790179 | None:intergenic |
| CTGAGAAGAAGAGAGACACG+TGG | 0.662972 | 4.3:+74790160 | None:intergenic |
| TGGAGTTGGAGGTGGAACAG+AGG | 0.663294 | 4.3:+74790126 | None:intergenic |
| GAAAGAACAAGAGGCCGTGG+TGG | 0.666177 | 4.3:-74788875 | MS.gene50291:CDS |
| CTACTAATACGTGCAAACCA+AGG | 0.668862 | 4.3:-74787315 | MS.gene50291:CDS |
| CAGCCTCATAGAAGAAAATG+GGG | 0.669770 | 4.3:-74787340 | MS.gene50291:CDS |
| GCTATACATTTCTGACAACA+AGG | 0.670805 | 4.3:-74783234 | MS.gene50291:CDS |
| TCAATAGTGTGGGATCGTAG+AGG | 0.675386 | 4.3:+74788290 | None:intergenic |
| CACTATTGATGACATTAGGG+AGG | 0.720288 | 4.3:-74788276 | MS.gene50291:intron |
| AAACCAAGGCCACACAACCA+CGG | 0.743266 | 4.3:-74787301 | MS.gene50291:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 74783142 | 74790245 | 74783142 | ID=MS.gene50291 |
| chr4.3 | mRNA | 74783142 | 74790245 | 74783142 | ID=MS.gene50291.t1;Parent=MS.gene50291 |
| chr4.3 | exon | 74790100 | 74790245 | 74790100 | ID=MS.gene50291.t1.exon1;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74790100 | 74790245 | 74790100 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74788806 | 74788943 | 74788806 | ID=MS.gene50291.t1.exon2;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74788806 | 74788943 | 74788806 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74788277 | 74788424 | 74788277 | ID=MS.gene50291.t1.exon3;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74788277 | 74788424 | 74788277 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74787302 | 74787391 | 74787302 | ID=MS.gene50291.t1.exon4;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74787302 | 74787391 | 74787302 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74785739 | 74785793 | 74785739 | ID=MS.gene50291.t1.exon5;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74785739 | 74785793 | 74785739 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74785332 | 74785454 | 74785332 | ID=MS.gene50291.t1.exon6;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74785332 | 74785454 | 74785332 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74784533 | 74784589 | 74784533 | ID=MS.gene50291.t1.exon7;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74784533 | 74784589 | 74784533 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| chr4.3 | exon | 74783142 | 74783266 | 74783142 | ID=MS.gene50291.t1.exon8;Parent=MS.gene50291.t1 |
| chr4.3 | CDS | 74783142 | 74783266 | 74783142 | ID=cds.MS.gene50291.t1;Parent=MS.gene50291.t1 |
| Gene Sequence |
| Protein sequence |