AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene058749


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058749.t1 MTR_3g005140 85.754 358 15 6 1 358 1 322 0.0 582
MS.gene058749.t1 MTR_7g011850 44.177 249 124 7 117 357 47 288 1.43e-56 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene058749.t1 AT1G33780 65.370 257 76 4 101 357 70 313 4.72e-112 329
MS.gene058749.t1 AT3G29240 41.803 244 120 5 130 357 75 312 1.16e-53 179
MS.gene058749.t1 AT3G29240 41.803 244 120 5 130 357 75 312 1.16e-53 179

Find 80 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACCTCTTGAAACAAAA+TGG 0.155587 3.1:+427497 MS.gene058749:CDS
TCTGATTGTTCTCTGCATTT+TGG 0.182538 3.1:+427733 MS.gene058749:CDS
TAGCTCAAGTTTGCTGTATA+AGG 0.253519 3.1:+427999 MS.gene058749:CDS
CATGATTTCAGTTTCTTTGT+TGG 0.269750 3.1:+427907 MS.gene058749:CDS
CACCCACAAGAAGGGCCTTT+TGG 0.291430 3.1:+427634 MS.gene058749:CDS
GGAGAGAAGTTGAAGCTTCC+AGG 0.302782 3.1:+427793 MS.gene058749:CDS
AGTTTCTTTGTTGGTTATGC+TGG 0.346630 3.1:+427916 MS.gene058749:CDS
GTAGTCCCTGGTCTATATTA+TGG 0.381600 3.1:+427826 MS.gene058749:CDS
CAGATTCTTCTGAAGGTTTG+TGG 0.391415 3.1:+428028 MS.gene058749:CDS
CCGTGGTGGTCATGTTAATC+TGG 0.405342 3.1:+426417 MS.gene058749:CDS
CAGAATAAAATGAATTGGTT+GGG 0.406618 3.1:-425952 None:intergenic
CCCGCCTTCTTTGTGTGTAT+CGG 0.407328 3.1:-427461 None:intergenic
GTTATTCTCCTTCTAAGATC+TGG 0.410814 3.1:+427604 MS.gene058749:CDS
CCAGTCTCAGGTACAGGAAT+AGG 0.419654 3.1:-427526 None:intergenic
CAAACCTCTTGAAACAAAAT+GGG 0.422046 3.1:+427498 MS.gene058749:CDS
GTCTAGTTCCAGATCTTAGA+AGG 0.431238 3.1:-427612 None:intergenic
TGTTCCAGAATAAAATGAAT+TGG 0.441229 3.1:-425957 None:intergenic
AGATTCTTCTGAAGGTTTGT+GGG 0.444169 3.1:+428029 MS.gene058749:CDS
TTCCAAAAGGCCCTTCTTGT+GGG 0.447471 3.1:-427636 None:intergenic
TTAGCAGTGACAACAAGAAA+TGG 0.448377 3.1:-426061 None:intergenic
AATCACGGCGGAGGTGGAGG+AGG 0.449102 3.1:+426115 MS.gene058749:CDS
CACGGCGGAGGTGGAGGAGG+AGG 0.453111 3.1:+426118 MS.gene058749:CDS
AACAATAATCACGGCGGAGG+TGG 0.457273 3.1:+426109 MS.gene058749:CDS
GGCGGAGGTGGAGGAGGAGG+AGG 0.457665 3.1:+426121 MS.gene058749:CDS
TTGTTTACAGTTAATGATCT+CGG 0.459996 3.1:-426008 None:intergenic
TGCAGCAGGGCTTGTGAAGA+AGG 0.465727 3.1:+427870 MS.gene058749:CDS
GTGGCTACCGACAAGCTTGA+TGG 0.470507 3.1:+427559 MS.gene058749:CDS
CCAGAATAAAATGAATTGGT+TGG 0.476573 3.1:-425953 None:intergenic
CCTATTCCTGTACCTGAGAC+TGG 0.480085 3.1:+427526 MS.gene058749:CDS
AATAATCACGGCGGAGGTGG+AGG 0.494325 3.1:+426112 MS.gene058749:CDS
AACTGTTTAGATGATGCAGC+AGG 0.499367 3.1:+427856 MS.gene058749:CDS
TGGTTATGCTGGATGGCAAA+TGG 0.500950 3.1:+427927 MS.gene058749:CDS
ACAAGTACACAGCCAGTCTC+AGG 0.508596 3.1:-427538 None:intergenic
ATTCCAAAAGGCCCTTCTTG+TGG 0.511329 3.1:-427637 None:intergenic
TGTTTAATCTTCTTGTGAAG+AGG 0.512942 3.1:-427673 None:intergenic
GGGACTACCTCTTCAAATCC+TGG 0.516956 3.1:-427811 None:intergenic
TAGCAGTGACAACAAGAAAT+GGG 0.520121 3.1:-426060 None:intergenic
GAGAATAACAGTTCTTTCAA+AGG 0.520498 3.1:-427590 None:intergenic
GTGGTCATGTTAATCTGGAT+TGG 0.533501 3.1:+426422 MS.gene058749:CDS
GCTTTGACAGATTCTTCTGA+AGG 0.533529 3.1:+428021 MS.gene058749:CDS
CGAGCTCCATAATATAGACC+AGG 0.539007 3.1:-427832 None:intergenic
TCTTTGTTGGTTATGCTGGA+TGG 0.540720 3.1:+427920 MS.gene058749:CDS
TAAACTATATAGAGATGAGC+TGG 0.545843 3.1:+426459 MS.gene058749:CDS
CTTCTTGTTCTTCTTGCCGC+CGG 0.547442 3.1:-426086 None:intergenic
CCGATACACACAAAGAAGGC+GGG 0.549826 3.1:+427461 MS.gene058749:CDS
GCGAATACCATCAAGCTTGT+CGG 0.551494 3.1:-427566 None:intergenic
GCAGCAGGGCTTGTGAAGAA+GGG 0.558137 3.1:+427871 MS.gene058749:CDS
ACACAGCCAGTCTCAGGTAC+AGG 0.559250 3.1:-427532 None:intergenic
ATGAAATTGAGTCAGAGTAT+TGG 0.561047 3.1:+427962 MS.gene058749:CDS
GGAACTAGACACCCACAAGA+AGG 0.566894 3.1:+427625 MS.gene058749:CDS
TGAGACTGGCTGTGTACTTG+TGG 0.571797 3.1:+427540 MS.gene058749:CDS
GGATTTGAAGAGGTAGTCCC+TGG 0.577229 3.1:+427814 MS.gene058749:CDS
TTCTTCTGAAGGTTTGTGGG+AGG 0.586761 3.1:+428032 MS.gene058749:CDS
CGATTGATGACAATTCCAAA+AGG 0.587218 3.1:-427649 None:intergenic
CAGCAGGGCTTGTGAAGAAG+GGG 0.599227 3.1:+427872 MS.gene058749:CDS
AAGAACAATAATCACGGCGG+AGG 0.604640 3.1:+426106 MS.gene058749:CDS
ATGCAGAGAACAATCAGAGA+AGG 0.607603 3.1:-427728 None:intergenic
TGACAACAAGAAATGGGATG+CGG 0.608709 3.1:-426054 None:intergenic
GAAGCTTCCAGGATTTGAAG+AGG 0.610660 3.1:+427804 MS.gene058749:CDS
GAACTAGACACCCACAAGAA+GGG 0.612099 3.1:+427626 MS.gene058749:CDS
CAGAGAACAATCAGAGAAGG+TGG 0.616018 3.1:-427725 None:intergenic
GATGCCGATACACACAAAGA+AGG 0.619105 3.1:+427457 MS.gene058749:CDS
TTTGCAACTTATGGGTACGC+AGG 0.620393 3.1:+428059 MS.gene058749:CDS
CTTGTTGTCACTGCTAACGC+CGG 0.621404 3.1:+426067 MS.gene058749:CDS
AACAAGAAGAACAATAATCA+CGG 0.628711 3.1:+426100 MS.gene058749:CDS
CGATACACACAAAGAAGGCG+GGG 0.630007 3.1:+427462 MS.gene058749:CDS
GCCGATACACACAAAGAAGG+CGG 0.635205 3.1:+427460 MS.gene058749:CDS
ACAAAGAAACTGAAATCATG+AGG 0.637763 3.1:-427904 None:intergenic
CAACAAGAAATGGGATGCGG+CGG 0.642061 3.1:-426051 None:intergenic
TGAGTCAGAGTATTGGTATG+TGG 0.643034 3.1:+427969 MS.gene058749:CDS
GGTGACCAGTCTATTCCAGA+AGG 0.645000 3.1:+426346 MS.gene058749:CDS
ACTGTTTAGATGATGCAGCA+GGG 0.653857 3.1:+427857 MS.gene058749:CDS
GTTGTCACTGCTAACGCCGG+CGG 0.656759 3.1:+426070 MS.gene058749:CDS
GAGCTCCATAATATAGACCA+GGG 0.684906 3.1:-427831 None:intergenic
TTTACAGTTAATGATCTCGG+CGG 0.719903 3.1:-426005 None:intergenic
CCAGATTAACATGACCACCA+CGG 0.729731 3.1:-426417 None:intergenic
TCTCAGAATGAGAACCGTGG+TGG 0.747290 3.1:+426403 MS.gene058749:CDS
AACTCTCAGAATGAGAACCG+TGG 0.749394 3.1:+426400 MS.gene058749:CDS
AAGAAGAACAATAATCACGG+CGG 0.784381 3.1:+426103 MS.gene058749:CDS
AAAGTGAATATGGATCTGTG+TGG 0.831813 3.1:+425902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATACATGATACATAATTA+TGG + chr3.1:426765-426784 MS.gene058749:intron 15.0%
!!! GATTTGTATCATTTTATTTA+TGG + chr3.1:427046-427065 MS.gene058749:intron 15.0%
!!! TTTTAAAAGCATAGTAAAAT+TGG - chr3.1:426236-426255 None:intergenic 15.0%
!! ACTATTAGTGAAAATAGAAA+AGG + chr3.1:427227-427246 MS.gene058749:intron 20.0%
!! CTTAATAACAAGTAAAAACA+AGG - chr3.1:427125-427144 None:intergenic 20.0%
!! TTAAGGATTTAGACAATAAA+TGG + chr3.1:427140-427159 MS.gene058749:intron 20.0%
!!! ATATTTGAAACTATGGAAAA+CGG + chr3.1:427183-427202 MS.gene058749:intron 20.0%
!!! CTTGTTTTTACTTGTTATTA+AGG + chr3.1:427123-427142 MS.gene058749:intron 20.0%
!!! GTTACTAAATCATGATTTTT+AGG - chr3.1:427706-427725 None:intergenic 20.0%
!!! TGAAAACATATTTGAAACTA+TGG + chr3.1:427176-427195 MS.gene058749:intron 20.0%
! AAAAAGTTATAGGAAGTCAA+TGG + chr3.1:426728-426747 MS.gene058749:intron 25.0%
! AACAAGAAGAACAATAATCA+CGG + chr3.1:426100-426119 MS.gene058749:CDS 25.0%
! AATCATACTTGATAGATAGT+TGG + chr3.1:426896-426915 MS.gene058749:intron 25.0%
! AGACAATAAATGGTGAAAAT+CGG + chr3.1:427150-427169 MS.gene058749:intron 25.0%
! ATAGATACATAGAATGCAAA+AGG - chr3.1:427293-427312 None:intergenic 25.0%
! ATTATCATTAGTGCTTCTAT+GGG - chr3.1:426661-426680 None:intergenic 25.0%
! CAGAATAAAATGAATTGGTT+GGG - chr3.1:425955-425974 None:intergenic 25.0%
! GAGAGACTAAAAAAAGTTAT+AGG + chr3.1:426718-426737 MS.gene058749:intron 25.0%
! TGTTCCAGAATAAAATGAAT+TGG - chr3.1:425960-425979 None:intergenic 25.0%
! TTAATGACAAGTTCATCAAA+AGG - chr3.1:426932-426951 None:intergenic 25.0%
! TTGTTTACAGTTAATGATCT+CGG - chr3.1:426011-426030 None:intergenic 25.0%
!!! TGTCTCCTTTTGATTTTTAT+TGG + chr3.1:426995-427014 MS.gene058749:intron 25.0%
ACAAAGAAACTGAAATCATG+AGG - chr3.1:427907-427926 None:intergenic 30.0%
ACCAGGTTATAGAAAAATGA+AGG + chr3.1:427020-427039 MS.gene058749:intron 30.0%
AGATTAATCAACAACACAAC+AGG - chr3.1:426311-426330 None:intergenic 30.0%
ATGAAATTGAGTCAGAGTAT+TGG + chr3.1:427962-427981 MS.gene058749:CDS 30.0%
ATTGATGTAGAAGCTACTAT+TGG + chr3.1:427332-427351 MS.gene058749:intron 30.0%
CAAACCTCTTGAAACAAAAT+GGG + chr3.1:427498-427517 MS.gene058749:CDS 30.0%
CATGATTTCAGTTTCTTTGT+TGG + chr3.1:427907-427926 MS.gene058749:CDS 30.0%
CATTATCATTAGTGCTTCTA+TGG - chr3.1:426662-426681 None:intergenic 30.0%
CCAGAAGGCAAAAATAATAA+TGG + chr3.1:426361-426380 MS.gene058749:CDS 30.0%
CCAGAATAAAATGAATTGGT+TGG - chr3.1:425956-425975 None:intergenic 30.0%
CCAGGTTATAGAAAAATGAA+GGG + chr3.1:427021-427040 MS.gene058749:intron 30.0%
GAATGAAGTTATTCCAATTC+AGG - chr3.1:426572-426591 None:intergenic 30.0%
GAGAATAACAGTTCTTTCAA+AGG - chr3.1:427593-427612 None:intergenic 30.0%
GGTCACCAATAAAAATCAAA+AGG - chr3.1:427003-427022 None:intergenic 30.0%
GTTGATTAATCTAACCTTAC+AGG + chr3.1:426319-426338 MS.gene058749:intron 30.0%
TAAACTATATAGAGATGAGC+TGG + chr3.1:426459-426478 MS.gene058749:CDS 30.0%
TAATCTAACCTTACAGGTAA+TGG + chr3.1:426325-426344 MS.gene058749:intron 30.0%
TCATTCCATTGTAGAAAAGA+TGG + chr3.1:426586-426605 MS.gene058749:intron 30.0%
TGTTTAATCTTCTTGTGAAG+AGG - chr3.1:427676-427695 None:intergenic 30.0%
! CCAACCAATTCATTTTATTC+TGG + chr3.1:425953-425972 MS.gene058749:CDS 30.0%
!! AGCATGTTTTTGCTAAAATC+AGG + chr3.1:427772-427791 MS.gene058749:CDS 30.0%
!! CATAGAAGCACTAATGATAA+TGG + chr3.1:426660-426679 MS.gene058749:intron 30.0%
!! CATTTTATTTATGGCTCGTT+TGG + chr3.1:427055-427074 MS.gene058749:intron 30.0%
!! TTTGATTTTTATTGGTGACC+AGG + chr3.1:427003-427022 MS.gene058749:intron 30.0%
!!! CCATTATTATTTTTGCCTTC+TGG - chr3.1:426364-426383 None:intergenic 30.0%
AAGAAGAACAATAATCACGG+CGG + chr3.1:426103-426122 MS.gene058749:CDS 35.0%
CAATTAACCTTTATCCCACT+AGG - chr3.1:426819-426838 None:intergenic 35.0%
CCAAACCTCTTGAAACAAAA+TGG + chr3.1:427497-427516 MS.gene058749:CDS 35.0%
CCATATCTAAGAAGCAATAC+AGG + chr3.1:427365-427384 MS.gene058749:intron 35.0%
CCTGTATTGCTTCTTAGATA+TGG - chr3.1:427368-427387 None:intergenic 35.0%
GGGATAAAGGTTAATTGTCA+AGG + chr3.1:426822-426841 MS.gene058749:intron 35.0%
TAGAATGCAAAAGGCGAAAA+AGG - chr3.1:427284-427303 None:intergenic 35.0%
TAGCAGTGACAACAAGAAAT+GGG - chr3.1:426063-426082 None:intergenic 35.0%
TCAGAAGTCCAATAGTTAAG+AGG + chr3.1:426691-426710 MS.gene058749:intron 35.0%
TCTCTCTACCTCTTAACTAT+TGG - chr3.1:426702-426721 None:intergenic 35.0%
TTAATCAACAACACAACAGG+CGG - chr3.1:426308-426327 None:intergenic 35.0%
TTAGCAGTGACAACAAGAAA+TGG - chr3.1:426064-426083 None:intergenic 35.0%
TTTACAGTTAATGATCTCGG+CGG - chr3.1:426008-426027 None:intergenic 35.0%
! AGATTCTTCTGAAGGTTTGT+GGG + chr3.1:428029-428048 MS.gene058749:CDS 35.0%
! AGTCTTGTCATAACCCATAT+AGG + chr3.1:426612-426631 MS.gene058749:intron 35.0%
! AGTTTCTTTGTTGGTTATGC+TGG + chr3.1:427916-427935 MS.gene058749:CDS 35.0%
! ATTAATCTAAGATGCCTCCT+TGG + chr3.1:426947-426966 MS.gene058749:intron 35.0%
! CGATTGATGACAATTCCAAA+AGG - chr3.1:427652-427671 None:intergenic 35.0%
! CTCTACCATCTTTTCTACAA+TGG - chr3.1:426594-426613 None:intergenic 35.0%
! GAGGAGATTTTGCAACTTAT+GGG + chr3.1:428051-428070 MS.gene058749:CDS 35.0%
! TCTGATTGTTCTCTGCATTT+TGG + chr3.1:427733-427752 MS.gene058749:CDS 35.0%
!! AAAATTGGTTTGCAGGTTGA+TGG - chr3.1:426221-426240 None:intergenic 35.0%
!! CCATTTTGTTTCAAGAGGTT+TGG - chr3.1:427500-427519 None:intergenic 35.0%
!! CCCTTCATTTTTCTATAACC+TGG - chr3.1:427024-427043 None:intergenic 35.0%
!! GAAGCACTAATGATAATGGT+TGG + chr3.1:426664-426683 MS.gene058749:intron 35.0%
!! GCATAGTAAAATTGGTTTGC+AGG - chr3.1:426228-426247 None:intergenic 35.0%
!! GTTATTCTCCTTCTAAGATC+TGG + chr3.1:427604-427623 MS.gene058749:CDS 35.0%
!! TAGCTCAAGTTTGCTGTATA+AGG + chr3.1:427999-428018 MS.gene058749:CDS 35.0%
AAAAACATGCTTGCCTCAAG+AGG - chr3.1:427763-427782 None:intergenic 40.0%
AACTGTTTAGATGATGCAGC+AGG + chr3.1:427856-427875 MS.gene058749:CDS 40.0%
ACATGTCCAAACCACCTATA+TGG - chr3.1:426629-426648 None:intergenic 40.0%
ACTGTTTAGATGATGCAGCA+GGG + chr3.1:427857-427876 MS.gene058749:CDS 40.0%
ATGCAGAGAACAATCAGAGA+AGG - chr3.1:427731-427750 None:intergenic 40.0%
CATAACCCATATAGGTGGTT+TGG + chr3.1:426620-426639 MS.gene058749:intron 40.0%
CATGTCCAAACCACCTATAT+GGG - chr3.1:426628-426647 None:intergenic 40.0%
CTTGTCATAACCCATATAGG+TGG + chr3.1:426615-426634 MS.gene058749:intron 40.0%
GAGCTCCATAATATAGACCA+GGG - chr3.1:427834-427853 None:intergenic 40.0%
GCTTTGACAGATTCTTCTGA+AGG + chr3.1:428021-428040 MS.gene058749:CDS 40.0%
GTAGTCCCTGGTCTATATTA+TGG + chr3.1:427826-427845 MS.gene058749:CDS 40.0%
GTGGTCATGTTAATCTGGAT+TGG + chr3.1:426422-426441 MS.gene058749:CDS 40.0%
TGACAACAAGAAATGGGATG+CGG - chr3.1:426057-426076 None:intergenic 40.0%
TGTACCTCTGTCTGTTTAAG+TGG + chr3.1:426533-426552 MS.gene058749:intron 40.0%
TTAACCTTTATCCCACTAGG+TGG - chr3.1:426816-426835 None:intergenic 40.0%
TTCGAGTCAACTTCCTGAAT+TGG + chr3.1:426556-426575 MS.gene058749:intron 40.0%
! ATAGGTGGTTTGGACATGTT+TGG + chr3.1:426630-426649 MS.gene058749:intron 40.0%
! CAGATTCTTCTGAAGGTTTG+TGG + chr3.1:428028-428047 MS.gene058749:CDS 40.0%
! GATTGTTCTCTGCATTTTGG+TGG + chr3.1:427736-427755 MS.gene058749:CDS 40.0%
! GGAGGAGATTTTGCAACTTA+TGG + chr3.1:428050-428069 MS.gene058749:CDS 40.0%
! GTCTAGTTCCAGATCTTAGA+AGG - chr3.1:427615-427634 None:intergenic 40.0%
! TCTTTGTTGGTTATGCTGGA+TGG + chr3.1:427920-427939 MS.gene058749:CDS 40.0%
!! TGAGCCCATTTTGTTTCAAG+AGG - chr3.1:427505-427524 None:intergenic 40.0%
!! TGAGTCAGAGTATTGGTATG+TGG + chr3.1:427969-427988 MS.gene058749:CDS 40.0%
!!! TTTTGCCTTCTGGAATAGAC+TGG - chr3.1:426354-426373 None:intergenic 40.0%
AACTCTCAGAATGAGAACCG+TGG + chr3.1:426400-426419 MS.gene058749:CDS 45.0%
AAGAACAATAATCACGGCGG+AGG + chr3.1:426106-426125 MS.gene058749:CDS 45.0%
ACTGGTCACCATTACCTGTA+AGG - chr3.1:426336-426355 None:intergenic 45.0%
ATTCAGAAGACTCCACCTAG+TGG + chr3.1:426801-426820 MS.gene058749:intron 45.0%
ATTCCAAAAGGCCCTTCTTG+TGG - chr3.1:427640-427659 None:intergenic 45.0%
CAGAGAACAATCAGAGAAGG+TGG - chr3.1:427728-427747 None:intergenic 45.0%
CCAGATTAACATGACCACCA+CGG - chr3.1:426420-426439 None:intergenic 45.0%
CGAACCACTTAAACAGACAG+AGG - chr3.1:426540-426559 None:intergenic 45.0%
CGAGCTCCATAATATAGACC+AGG - chr3.1:427835-427854 None:intergenic 45.0%
GAACTAGACACCCACAAGAA+GGG + chr3.1:427626-427645 MS.gene058749:CDS 45.0%
GAAGCTTCCAGGATTTGAAG+AGG + chr3.1:427804-427823 MS.gene058749:CDS 45.0%
GATGCCGATACACACAAAGA+AGG + chr3.1:427457-427476 MS.gene058749:CDS 45.0%
GCGAATACCATCAAGCTTGT+CGG - chr3.1:427569-427588 None:intergenic 45.0%
GGAGCAACTTACTCGATGTT+AGG + chr3.1:427386-427405 MS.gene058749:intron 45.0%
TGGTTATGCTGGATGGCAAA+TGG + chr3.1:427927-427946 MS.gene058749:CDS 45.0%
TTCAGAAGACTCCACCTAGT+GGG + chr3.1:426802-426821 MS.gene058749:intron 45.0%
TTCCAAAAGGCCCTTCTTGT+GGG - chr3.1:427639-427658 None:intergenic 45.0%
TTTGCAACTTATGGGTACGC+AGG + chr3.1:428059-428078 MS.gene058749:CDS 45.0%
! TTCTTCTGAAGGTTTGTGGG+AGG + chr3.1:428032-428051 MS.gene058749:CDS 45.0%
AACAATAATCACGGCGGAGG+TGG + chr3.1:426109-426128 MS.gene058749:CDS 50.0%
ACAAGTACACAGCCAGTCTC+AGG - chr3.1:427541-427560 None:intergenic 50.0%
CAACAAGAAATGGGATGCGG+CGG - chr3.1:426054-426073 None:intergenic 50.0%
CATGTTGTCAGCCTCAACCA+AGG - chr3.1:426967-426986 None:intergenic 50.0%
CCAGTCTCAGGTACAGGAAT+AGG - chr3.1:427529-427548 None:intergenic 50.0%
CCCGCCTTCTTTGTGTGTAT+CGG - chr3.1:427464-427483 None:intergenic 50.0%
CCGATACACACAAAGAAGGC+GGG + chr3.1:427461-427480 MS.gene058749:CDS 50.0%
CCGTGGTGGTCATGTTAATC+TGG + chr3.1:426417-426436 MS.gene058749:CDS 50.0%
CCTATTCCTGTACCTGAGAC+TGG + chr3.1:427526-427545 MS.gene058749:CDS 50.0%
CGATACACACAAAGAAGGCG+GGG + chr3.1:427462-427481 MS.gene058749:CDS 50.0%
CTAAGATGCCTCCTTGGTTG+AGG + chr3.1:426953-426972 MS.gene058749:intron 50.0%
CTTCTTGTTCTTCTTGCCGC+CGG - chr3.1:426089-426108 None:intergenic 50.0%
GACTCCACCTAGTGGGATAA+AGG + chr3.1:426809-426828 MS.gene058749:intron 50.0%
GCCGATACACACAAAGAAGG+CGG + chr3.1:427460-427479 MS.gene058749:CDS 50.0%
GGAACTAGACACCCACAAGA+AGG + chr3.1:427625-427644 MS.gene058749:CDS 50.0%
GGAGAGAAGTTGAAGCTTCC+AGG + chr3.1:427793-427812 MS.gene058749:CDS 50.0%
GGATTTGAAGAGGTAGTCCC+TGG + chr3.1:427814-427833 MS.gene058749:CDS 50.0%
GGGACTACCTCTTCAAATCC+TGG - chr3.1:427814-427833 None:intergenic 50.0%
GGTGACCAGTCTATTCCAGA+AGG + chr3.1:426346-426365 MS.gene058749:CDS 50.0%
TCTCAGAATGAGAACCGTGG+TGG + chr3.1:426403-426422 MS.gene058749:CDS 50.0%
! CTTGTTGTCACTGCTAACGC+CGG + chr3.1:426067-426086 MS.gene058749:CDS 50.0%
! TGAGACTGGCTGTGTACTTG+TGG + chr3.1:427540-427559 MS.gene058749:CDS 50.0%
!! GCATTTTGGTGGACCTCTTG+AGG + chr3.1:427747-427766 MS.gene058749:CDS 50.0%
AATAATCACGGCGGAGGTGG+AGG + chr3.1:426112-426131 MS.gene058749:CDS 55.0%
ACACAGCCAGTCTCAGGTAC+AGG - chr3.1:427535-427554 None:intergenic 55.0%
CAGCAGGGCTTGTGAAGAAG+GGG + chr3.1:427872-427891 MS.gene058749:CDS 55.0%
GCAGCAGGGCTTGTGAAGAA+GGG + chr3.1:427871-427890 MS.gene058749:CDS 55.0%
GTGGCTACCGACAAGCTTGA+TGG + chr3.1:427559-427578 MS.gene058749:CDS 55.0%
GTTGTCAGCCTCAACCAAGG+AGG - chr3.1:426964-426983 None:intergenic 55.0%
TGCAGCAGGGCTTGTGAAGA+AGG + chr3.1:427870-427889 MS.gene058749:CDS 55.0%
! CACCCACAAGAAGGGCCTTT+TGG + chr3.1:427634-427653 MS.gene058749:CDS 55.0%
GTTGTCACTGCTAACGCCGG+CGG + chr3.1:426070-426089 MS.gene058749:CDS 60.0%
AATCACGGCGGAGGTGGAGG+AGG + chr3.1:426115-426134 MS.gene058749:CDS 65.0%
CACGGCGGAGGTGGAGGAGG+AGG + chr3.1:426118-426137 MS.gene058749:CDS 75.0%
GGCGGAGGTGGAGGAGGAGG+AGG + chr3.1:426121-426140 MS.gene058749:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 425911 428086 425911 ID=MS.gene058749
chr3.1 mRNA 425911 428086 425911 ID=MS.gene058749.t1;Parent=MS.gene058749
chr3.1 exon 425911 426205 425911 ID=MS.gene058749.t1.exon1;Parent=MS.gene058749.t1
chr3.1 CDS 425911 426205 425911 ID=cds.MS.gene058749.t1;Parent=MS.gene058749.t1
chr3.1 exon 426341 426480 426341 ID=MS.gene058749.t1.exon2;Parent=MS.gene058749.t1
chr3.1 CDS 426341 426480 426341 ID=cds.MS.gene058749.t1;Parent=MS.gene058749.t1
chr3.1 exon 427445 428086 427445 ID=MS.gene058749.t1.exon3;Parent=MS.gene058749.t1
chr3.1 CDS 427445 428086 427445 ID=cds.MS.gene058749.t1;Parent=MS.gene058749.t1
Gene Sequence

>MS.gene058749

ATGGATCTGTGTGGCGTTAATGTGAAGAACAATCTTTTGTACCCAACCAATTCATTTTATTCTGGAACAACAAGATCATCATCTTTTTACAACGCCGCCGAGATCATTAACTGTAAACAACAACAACAACACTTTCAACGCCGCCGCATCCCATTTCTTGTTGTCACTGCTAACGCCGGCGGCAAGAAGAACAAGAAGAACAATAATCACGGCGGAGGTGGAGGAGGAGGAGGTATGTATACTCTTCATTTCTTGTTGTCACTCACTGCATTTGCATTATTATTTATACTTGTAAGTAATTCTCTATCCATCAACCTGCAAACCAATTTTACTATGCTTTTAAAACATTCAGTCAATGTCATCATGCTTCTAATTTACTGTTTTACAAGTATAGCCGCCTGTTGTGTTGTTGATTAATCTAACCTTACAGGTAATGGTGACCAGTCTATTCCAGAAGGCAAAAATAATAATGGTGATAAATCAAATAACAACTCTCAGAATGAGAACCGTGGTGGTCATGTTAATCTGGATTGGCGTGAATTCAGAGCTAAACTATATAGAGATGAGCTGGTAGTAATCAATTCATTGCTAAATAAATACAATCTGTCTGTAATTTACATGATGTACCTCTGTCTGTTTAAGTGGTTCGAGTCAACTTCCTGAATTGGAATAACTTCATTCCATTGTAGAAAAGATGGTAGAGTCTTGTCATAACCCATATAGGTGGTTTGGACATGTTTGGAAAAACCCATAGAAGCACTAATGATAATGGTTGGTTGATCAGAAGTCCAATAGTTAAGAGGTAGAGAGAGACTAAAAAAAGTTATAGGAAGTCAATGGTCTATTTGTGAACTTTATACATGATACATAATTATGGCATTGTTTGATTCATTCAGAAGACTCCACCTAGTGGGATAAAGGTTAATTGTCAAGGTTTTAAAACATCTGTTATATCTCTTTATGTGATTTGTTTCAGCAGTAGTATAATCATACTTGATAGATAGTTGGAGATTCATCTCCTTTTGATGAACTTGTCATTAATCTAAGATGCCTCCTTGGTTGAGGCTGACAACATGACTGTATCTGTCTCCTTTTGATTTTTATTGGTGACCAGGTTATAGAAAAATGAAGGGTTGATTTGTATCATTTTATTTATGGCTCGTTTGGTTTAAGAAAATGTGTTTTATTTTCACTAATATTTACAAATACTACCTTGTTTTTACTTGTTATTAAGGATTTAGACAATAAATGGTGAAAATCGGAAATGAAAACATATTTGAAACTATGGAAAACGGAAACTGTGACTTTTGTTCATAACTATTAGTGAAAATAGAAAAGGAAAACAAGAAACAATTGTCAAACTAAAATATCCTTTTTCGCCTTTTGCATTCTATGTATCTATACTTGATGTACTTTTAATTATTGATGTAGAAGCTACTATTGGTTATGATTGACCATATCTAAGAAGCAATACAGGAGCAACTTACTCGATGTTAGGTTTCATTAACTGAGTTTTTCTTGACTTAATTAACAGAAAGAAATAGCAGATGCCGATACACACAAAGAAGGCGGGGCATTACACATTTCCAAACCTCTTGAAACAAAATGGGCTCATCCTATTCCTGTACCTGAGACTGGCTGTGTACTTGTGGCTACCGACAAGCTTGATGGTATTCGCACCTTTGAAAGAACTGTTATTCTCCTTCTAAGATCTGGAACTAGACACCCACAAGAAGGGCCTTTTGGAATTGTCATCAATCGTCCTCTTCACAAGAAGATTAAACAGATGAATCCTAAAAATCATGATTTAGTAACCACCTTCTCTGATTGTTCTCTGCATTTTGGTGGACCTCTTGAGGCAAGCATGTTTTTGCTAAAATCAGGAGAGAAGTTGAAGCTTCCAGGATTTGAAGAGGTAGTCCCTGGTCTATATTATGGAGCTCGAAACTGTTTAGATGATGCAGCAGGGCTTGTGAAGAAGGGGATTATCAAGCCTCATGATTTCAGTTTCTTTGTTGGTTATGCTGGATGGCAAATGGATCAGTTGCGAGATGAAATTGAGTCAGAGTATTGGTATGTGGCTGCATGTAGCTCAAGTTTGCTGTATAAGGCTTTGACAGATTCTTCTGAAGGTTTGTGGGAGGAGATTTTGCAACTTATGGGTACGCAGGATTGA

Protein sequence

>MS.gene058749.t1

MDLCGVNVKNNLLYPTNSFYSGTTRSSSFYNAAEIINCKQQQQHFQRRRIPFLVVTANAGGKKNKKNNNHGGGGGGGGMYTLHFLLSLTAFALLFILVSNGDQSIPEGKNNNGDKSNNNSQNENRGGHVNLDWREFRAKLYRDELKEIADADTHKEGGALHISKPLETKWAHPIPVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKNHDLVTTFSDCSLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNCLDDAAGLVKKGIIKPHDFSFFVGYAGWQMDQLRDEIESEYWYVAACSSSLLYKALTDSSEGLWEEILQLMGTQD