Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50334.t1 | XP_003605049.1 | 40.7 | 639 | 110 | 4 | 1 | 370 | 712 | 1350 | 5.30E-112 | 414.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50334.t1 | G7JDB8 | 40.7 | 639 | 110 | 4 | 1 | 370 | 712 | 1350 | 3.8e-112 | 414.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051932 | MS.gene50334 | 0.801907 | 7.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50334.t1 | MTR_4g023260 | 61.423 | 267 | 64 | 1 | 1 | 228 | 712 | 978 | 3.85e-103 | 331 |
| MS.gene50334.t1 | MTR_4g023260 | 56.805 | 169 | 63 | 2 | 210 | 370 | 1184 | 1350 | 1.82e-51 | 184 |
| MS.gene50334.t1 | MTR_4g023060 | 60.674 | 267 | 66 | 1 | 1 | 228 | 697 | 963 | 1.20e-99 | 322 |
| MS.gene50334.t1 | MTR_4g023060 | 61.074 | 149 | 44 | 2 | 230 | 370 | 1188 | 1330 | 6.19e-37 | 142 |
| MS.gene50334.t1 | MTR_4g023040 | 60.300 | 267 | 67 | 1 | 1 | 228 | 670 | 936 | 3.25e-98 | 318 |
| MS.gene50334.t1 | MTR_4g023040 | 61.745 | 149 | 43 | 2 | 230 | 370 | 1161 | 1303 | 2.82e-37 | 143 |
| MS.gene50334.t1 | MTR_4g023220 | 42.146 | 261 | 85 | 6 | 1 | 226 | 309 | 538 | 2.63e-51 | 184 |
| MS.gene50334.t1 | MTR_5g090870 | 43.382 | 136 | 77 | 0 | 1 | 136 | 578 | 713 | 9.27e-27 | 112 |
| MS.gene50334.t1 | MTR_5g090940 | 44.526 | 137 | 73 | 2 | 1 | 136 | 718 | 852 | 1.87e-26 | 111 |
| MS.gene50334.t1 | MTR_3g012470 | 25.279 | 269 | 147 | 4 | 1 | 232 | 709 | 960 | 2.50e-21 | 96.3 |
| MS.gene50334.t1 | MTR_3g012470 | 25.279 | 269 | 147 | 4 | 1 | 232 | 709 | 960 | 3.36e-21 | 95.9 |
| MS.gene50334.t1 | MTR_3g019080 | 30.631 | 222 | 112 | 5 | 7 | 188 | 709 | 928 | 5.68e-20 | 92.4 |
| MS.gene50334.t1 | MTR_6g078420 | 28.634 | 227 | 117 | 4 | 7 | 191 | 725 | 948 | 7.41e-18 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGAAGTGTTTCCAAATT+TGG | 0.065855 | 4.4:-78305014 | None:intergenic |
| ACTTTCAACTCTTTCAATTT+TGG | 0.107086 | 4.4:-78305089 | None:intergenic |
| CTTATCATGTGAATCTTTAA+TGG | 0.163482 | 4.4:-78304786 | None:intergenic |
| GCATCACAATTTGTATTCTT+TGG | 0.191307 | 4.4:-78305407 | None:intergenic |
| GTAAGGTTACCAACTGAATT+TGG | 0.209842 | 4.4:-78304828 | None:intergenic |
| CTCATTAACTCTTCTAATTC+AGG | 0.229391 | 4.4:-78306304 | None:intergenic |
| ATGGGCTCGCCGGAAGTTTC+CGG | 0.235886 | 4.4:+78305494 | MS.gene50334:CDS |
| TACATATAGTTCATCTAAAT+TGG | 0.238605 | 4.4:+78305554 | MS.gene50334:CDS |
| CCCAACAGTGGTTTGTAAAA+TGG | 0.238782 | 4.4:-78306124 | None:intergenic |
| AAGTTTAAGATCACATCTTA+TGG | 0.257397 | 4.4:+78306466 | MS.gene50334:CDS |
| GGAACCATAGAGATAAAATT+TGG | 0.260408 | 4.4:+78306097 | MS.gene50334:CDS |
| GGCAAATGGCTATCCAAATT+TGG | 0.285240 | 4.4:+78305001 | MS.gene50334:CDS |
| AGCCTCCACTTGTTTATTGA+TGG | 0.286766 | 4.4:+78305624 | MS.gene50334:CDS |
| AATTCAGTTGGTAACCTTAC+TGG | 0.289604 | 4.4:+78304831 | MS.gene50334:CDS |
| CTGATCACTTTGAAAATTGA+TGG | 0.297634 | 4.4:+78304927 | MS.gene50334:CDS |
| GAGCTAAACACAGATGCTTT+TGG | 0.309803 | 4.4:+78306074 | MS.gene50334:intron |
| TTCTATAGACTATTGACTTT+GGG | 0.319154 | 4.4:+78306415 | MS.gene50334:CDS |
| TACTTTAGCATTGGTGTTCC+AGG | 0.324597 | 4.4:+78305521 | MS.gene50334:CDS |
| CAAACATAATCAAACCATTC+TGG | 0.324980 | 4.4:-78305450 | None:intergenic |
| AGAATGGTTACCCTCTTCTT+AGG | 0.331237 | 4.4:-78306199 | None:intergenic |
| GGAGTCTGTGCCAACTTTCA+TGG | 0.339281 | 4.4:+78306146 | MS.gene50334:CDS |
| GATAGCCATTTGCCCCAGTA+TGG | 0.351673 | 4.4:-78304992 | None:intergenic |
| GCCAACTTTCATGGAAACTT+TGG | 0.356690 | 4.4:+78306155 | MS.gene50334:CDS |
| CCAACTTTCATGGAAACTTT+GGG | 0.358198 | 4.4:+78306156 | MS.gene50334:CDS |
| TGAATTTGGAAACTCCTTGA+TGG | 0.371772 | 4.4:-78304814 | None:intergenic |
| GCCCTCCCACAAAGCATTAT+CGG | 0.373712 | 4.4:+78305131 | MS.gene50334:CDS |
| GAATTGAAATGCCAGCCTTC+AGG | 0.374182 | 4.4:+78306223 | MS.gene50334:CDS |
| CTTCTATAGACTATTGACTT+TGG | 0.381561 | 4.4:+78306414 | MS.gene50334:CDS |
| ATCCATTGTTCAAACTGATA+TGG | 0.382340 | 4.4:+78306357 | MS.gene50334:CDS |
| AAGTAACAACCGGAAACTTC+CGG | 0.387110 | 4.4:-78305503 | None:intergenic |
| CGGTTCAAAGAGTACCATAC+TGG | 0.399564 | 4.4:+78304978 | MS.gene50334:CDS |
| CCCAAAGTTTCCATGAAAGT+TGG | 0.409056 | 4.4:-78306156 | None:intergenic |
| CTGGCATTTCAATTCAAGAA+TGG | 0.432889 | 4.4:-78306215 | None:intergenic |
| TACCCTCTTCTTAGGTCTTG+AGG | 0.438704 | 4.4:-78306191 | None:intergenic |
| GTGGCCGGGATTGCCGCTGC+AGG | 0.440130 | 4.4:+78305658 | MS.gene50334:CDS |
| TTCTAGCCTTGAAGAATCCT+TGG | 0.441609 | 4.4:+78306264 | MS.gene50334:CDS |
| ACCAATGCTAAAGTAACAAC+CGG | 0.448673 | 4.4:-78305513 | None:intergenic |
| TATAGTTCATCTAAATTGGC+TGG | 0.451949 | 4.4:+78305558 | MS.gene50334:CDS |
| CTTCCACCAAGGATTCTTCA+AGG | 0.452575 | 4.4:-78306270 | None:intergenic |
| TGAACCTGCAGCGGCAATCC+CGG | 0.453548 | 4.4:-78305662 | None:intergenic |
| ATTGATGGCCGAGAAGTTTG+TGG | 0.456601 | 4.4:+78305639 | MS.gene50334:CDS |
| TGTGATGCCACTACCGGAAA+AGG | 0.460290 | 4.4:+78305422 | MS.gene50334:CDS |
| AGTCAATAGTCTATAGAAGT+TGG | 0.462521 | 4.4:-78306410 | None:intergenic |
| TCCGGTTGTTACTTTAGCAT+TGG | 0.467662 | 4.4:+78305512 | MS.gene50334:CDS |
| GAGTACCATACTGGGGCAAA+TGG | 0.469435 | 4.4:+78304987 | MS.gene50334:CDS |
| ATTGATGGTTGCTCTCAACT+TGG | 0.482553 | 4.4:+78304942 | MS.gene50334:CDS |
| AATCCCGGCCACAAACTTCT+CGG | 0.485528 | 4.4:-78305647 | None:intergenic |
| CAGATCCGATAATGCTTTGT+GGG | 0.485764 | 4.4:-78305136 | None:intergenic |
| AGTTTAAGATCACATCTTAT+GGG | 0.494280 | 4.4:+78306467 | MS.gene50334:CDS |
| TTCCGACTGAATTGAAGGAT+TGG | 0.496581 | 4.4:+78305592 | MS.gene50334:CDS |
| TTGGGAAAATTGATAACACT+TGG | 0.497406 | 4.4:+78306433 | MS.gene50334:CDS |
| AGTTGAAAGTTTCAAACAGT+GGG | 0.498044 | 4.4:+78305102 | MS.gene50334:CDS |
| ACAGATCCGATAATGCTTTG+TGG | 0.525573 | 4.4:-78305137 | None:intergenic |
| ATAAGATGTGATCTTAAACT+TGG | 0.530667 | 4.4:-78306464 | None:intergenic |
| TAGCCTTGAAGAATCCTTGG+TGG | 0.531565 | 4.4:+78306267 | MS.gene50334:CDS |
| ACAAATTGTGATGCCACTAC+CGG | 0.534554 | 4.4:+78305416 | MS.gene50334:CDS |
| TCCGATAATGCTTTGTGGGA+GGG | 0.535259 | 4.4:-78305132 | None:intergenic |
| ATGGCCGAGAAGTTTGTGGC+CGG | 0.540185 | 4.4:+78305643 | MS.gene50334:CDS |
| AAGGAGTTTCCAAATTCAGT+TGG | 0.541568 | 4.4:+78304819 | MS.gene50334:CDS |
| TGCCAATCCTTCAATTCAGT+CGG | 0.541870 | 4.4:-78305594 | None:intergenic |
| CGGAAAAGGTGATTCCAGAA+TGG | 0.542830 | 4.4:+78305436 | MS.gene50334:CDS |
| CTTCCTCTGTACCTGAAGGC+TGG | 0.547372 | 4.4:-78306234 | None:intergenic |
| CTATATACTCAAGGCCAGTA+AGG | 0.547524 | 4.4:-78304845 | None:intergenic |
| ATGAGTGTGAATAAATCATA+CGG | 0.547750 | 4.4:+78306322 | MS.gene50334:CDS |
| TGGCCGAGAAGTTTGTGGCC+GGG | 0.554649 | 4.4:+78305644 | MS.gene50334:CDS |
| CATGATAAGTACTTCCATCA+AGG | 0.556533 | 4.4:+78304800 | MS.gene50334:CDS |
| GATGTGATCTTAAACTTGGT+CGG | 0.571551 | 4.4:-78306460 | None:intergenic |
| GGTTCAAAGAGTACCATACT+GGG | 0.573562 | 4.4:+78304979 | MS.gene50334:CDS |
| ATGACATGTCTATATACTCA+AGG | 0.577781 | 4.4:-78304854 | None:intergenic |
| AACTTGGAGAATCATTTCAA+CGG | 0.578876 | 4.4:+78304958 | MS.gene50334:CDS |
| TCACATCTTATGGGAAGATG+AGG | 0.582033 | 4.4:+78306476 | MS.gene50334:CDS |
| CTTGAAGAATCCTTGGTGGA+AGG | 0.592592 | 4.4:+78306271 | MS.gene50334:CDS |
| ATCCGATAATGCTTTGTGGG+AGG | 0.596734 | 4.4:-78305133 | None:intergenic |
| ATTGTAGTTTCCTTCCACCA+AGG | 0.597885 | 4.4:-78306281 | None:intergenic |
| TGCCATATCAGTTTGAACAA+TGG | 0.600311 | 4.4:-78306359 | None:intergenic |
| GAGTTGAAAGTTTCAAACAG+TGG | 0.601916 | 4.4:+78305101 | MS.gene50334:CDS |
| CGGCAATATTGAACCTGCAG+CGG | 0.612307 | 4.4:-78305671 | None:intergenic |
| TTATGGGAAGATGAGGGCAG+AGG | 0.614632 | 4.4:+78306483 | MS.gene50334:CDS |
| GGCCATCAATAAACAAGTGG+AGG | 0.619187 | 4.4:-78305626 | None:intergenic |
| AAGATGAGGGCAGAGGAGTG+AGG | 0.622047 | 4.4:+78306490 | MS.gene50334:CDS |
| AAGCCTCAAGACCTAAGAAG+AGG | 0.628523 | 4.4:+78306188 | MS.gene50334:CDS |
| GAAGCTTCCTCTGTACCTGA+AGG | 0.628804 | 4.4:-78306238 | None:intergenic |
| AGCCTCAAGACCTAAGAAGA+GGG | 0.636291 | 4.4:+78306189 | MS.gene50334:CDS |
| CTCGGCCATCAATAAACAAG+TGG | 0.644140 | 4.4:-78305629 | None:intergenic |
| CACATCTTATGGGAAGATGA+GGG | 0.644807 | 4.4:+78306477 | MS.gene50334:CDS |
| TTCCGGCGAGCCCATAAAAG+CGG | 0.646757 | 4.4:-78305486 | None:intergenic |
| ATGCCAGCCTTCAGGTACAG+AGG | 0.661086 | 4.4:+78306231 | MS.gene50334:CDS |
| TGGCACAGACTCCCCAACAG+TGG | 0.665032 | 4.4:-78306136 | None:intergenic |
| GTTCAAAGAGTACCATACTG+GGG | 0.765324 | 4.4:+78304980 | MS.gene50334:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATCAATATTCTATTTAAA+GGG | - | chr4.4:78305344-78305363 | None:intergenic | 15.0% |
| !! | TACATCAATATTCTATTTAA+AGG | - | chr4.4:78305345-78305364 | None:intergenic | 15.0% |
| !! | ATTTGCAGAAAGATATTATA+GGG | + | chr4.4:78305970-78305989 | MS.gene50334:intron | 20.0% |
| !! | CTAAAGTATGATTATATGTT+GGG | + | chr4.4:78306052-78306071 | MS.gene50334:intron | 20.0% |
| !! | GAAAAAAAAAAAAAAAGGCT+TGG | + | chr4.4:78306009-78306028 | MS.gene50334:intron | 20.0% |
| !! | TACATATAGTTCATCTAAAT+TGG | + | chr4.4:78305554-78305573 | MS.gene50334:CDS | 20.0% |
| !! | TTCTTGCATTATGAAAATAA+TGG | - | chr4.4:78305314-78305333 | None:intergenic | 20.0% |
| !!! | TATATGTATTTTTTACTTCC+TGG | - | chr4.4:78305542-78305561 | None:intergenic | 20.0% |
| !!! | TCTAAAGTATGATTATATGT+TGG | + | chr4.4:78306051-78306070 | MS.gene50334:intron | 20.0% |
| !!! | TTTTGGAAATGTTTCAATAA+TGG | - | chr4.4:78305075-78305094 | None:intergenic | 20.0% |
| ! | ATAAGATGTGATCTTAAACT+TGG | - | chr4.4:78306467-78306486 | None:intergenic | 25.0% |
| ! | ATGAGTGTGAATAAATCATA+CGG | + | chr4.4:78306322-78306341 | MS.gene50334:CDS | 25.0% |
| ! | CTTATCATGTGAATCTTTAA+TGG | - | chr4.4:78304789-78304808 | None:intergenic | 25.0% |
| ! | GATTTGCAGAAAGATATTAT+AGG | + | chr4.4:78305969-78305988 | MS.gene50334:intron | 25.0% |
| ! | TAAATCATACGGAAAAATGA+AGG | + | chr4.4:78306333-78306352 | MS.gene50334:CDS | 25.0% |
| !! | AAATGAAGTGTTTCCAAATT+TGG | - | chr4.4:78305017-78305036 | None:intergenic | 25.0% |
| !! | AAGTTTAAGATCACATCTTA+TGG | + | chr4.4:78306466-78306485 | MS.gene50334:CDS | 25.0% |
| !! | ACTTTCAACTCTTTCAATTT+TGG | - | chr4.4:78305092-78305111 | None:intergenic | 25.0% |
| !! | AGTTTAAGATCACATCTTAT+GGG | + | chr4.4:78306467-78306486 | MS.gene50334:CDS | 25.0% |
| !! | ATCTCCAAATTTTATCTCTA+TGG | - | chr4.4:78306104-78306123 | None:intergenic | 25.0% |
| !! | ATTTTCAAAGTGATCAGTTT+TGG | - | chr4.4:78304924-78304943 | None:intergenic | 25.0% |
| !!! | TTCTATAGACTATTGACTTT+GGG | + | chr4.4:78306415-78306434 | MS.gene50334:CDS | 25.0% |
| AACTTGGAGAATCATTTCAA+CGG | + | chr4.4:78304958-78304977 | MS.gene50334:CDS | 30.0% | |
| AGACTAGATTCTGACTAATT+GGG | + | chr4.4:78305734-78305753 | MS.gene50334:intron | 30.0% | |
| AGTCAATAGTCTATAGAAGT+TGG | - | chr4.4:78306413-78306432 | None:intergenic | 30.0% | |
| AGTTGAAAGTTTCAAACAGT+GGG | + | chr4.4:78305102-78305121 | MS.gene50334:CDS | 30.0% | |
| ATCCATTGTTCAAACTGATA+TGG | + | chr4.4:78306357-78306376 | MS.gene50334:CDS | 30.0% | |
| ATGACATGTCTATATACTCA+AGG | - | chr4.4:78304857-78304876 | None:intergenic | 30.0% | |
| CAAACATAATCAAACCATTC+TGG | - | chr4.4:78305453-78305472 | None:intergenic | 30.0% | |
| CTCATTAACTCTTCTAATTC+AGG | - | chr4.4:78306307-78306326 | None:intergenic | 30.0% | |
| GCATCACAATTTGTATTCTT+TGG | - | chr4.4:78305410-78305429 | None:intergenic | 30.0% | |
| GGAACCATAGAGATAAAATT+TGG | + | chr4.4:78306097-78306116 | MS.gene50334:CDS | 30.0% | |
| TATAGTTCATCTAAATTGGC+TGG | + | chr4.4:78305558-78305577 | MS.gene50334:CDS | 30.0% | |
| ! | CTGATCACTTTGAAAATTGA+TGG | + | chr4.4:78304927-78304946 | MS.gene50334:CDS | 30.0% |
| ! | GAAAAATCAAGAGTATGTTC+TGG | - | chr4.4:78305923-78305942 | None:intergenic | 30.0% |
| ! | GAATCTAGTCTGAAACATAT+TGG | - | chr4.4:78305725-78305744 | None:intergenic | 30.0% |
| ! | TATGATTCGGAGTTATGAAT+TGG | - | chr4.4:78305800-78305819 | None:intergenic | 30.0% |
| ! | TTGGGAAAATTGATAACACT+TGG | + | chr4.4:78306433-78306452 | MS.gene50334:CDS | 30.0% |
| !! | CTTCTATAGACTATTGACTT+TGG | + | chr4.4:78306414-78306433 | MS.gene50334:CDS | 30.0% |
| !!! | ATAGACATGTCATTTTGCAA+AGG | + | chr4.4:78304864-78304883 | MS.gene50334:CDS | 30.0% |
| !!! | TAGACATGTCATTTTGCAAA+GGG | + | chr4.4:78304865-78304884 | MS.gene50334:CDS | 30.0% |
| AAGGAGTTTCCAAATTCAGT+TGG | + | chr4.4:78304819-78304838 | MS.gene50334:CDS | 35.0% | |
| ACCAATGCTAAAGTAACAAC+CGG | - | chr4.4:78305516-78305535 | None:intergenic | 35.0% | |
| ACTTGATGCTGCTGAATTTA+AGG | - | chr4.4:78305261-78305280 | None:intergenic | 35.0% | |
| AGAAAGATATTATAGGGCAC+GGG | + | chr4.4:78305976-78305995 | MS.gene50334:intron | 35.0% | |
| CAGAAAGATATTATAGGGCA+CGG | + | chr4.4:78305975-78305994 | MS.gene50334:intron | 35.0% | |
| CAGACTAGATTCTGACTAAT+TGG | + | chr4.4:78305733-78305752 | MS.gene50334:intron | 35.0% | |
| CAGGAAAAGGAGTTATGATT+CGG | - | chr4.4:78305813-78305832 | None:intergenic | 35.0% | |
| CATGATAAGTACTTCCATCA+AGG | + | chr4.4:78304800-78304819 | MS.gene50334:CDS | 35.0% | |
| CCAACTTTCATGGAAACTTT+GGG | + | chr4.4:78306156-78306175 | MS.gene50334:CDS | 35.0% | |
| CTGGCATTTCAATTCAAGAA+TGG | - | chr4.4:78306218-78306237 | None:intergenic | 35.0% | |
| GAGTTGAAAGTTTCAAACAG+TGG | + | chr4.4:78305101-78305120 | MS.gene50334:CDS | 35.0% | |
| GATGTGATCTTAAACTTGGT+CGG | - | chr4.4:78306463-78306482 | None:intergenic | 35.0% | |
| GTAAGGTTACCAACTGAATT+TGG | - | chr4.4:78304831-78304850 | None:intergenic | 35.0% | |
| TGAAACATATTGGACCTGTA+TGG | - | chr4.4:78305715-78305734 | None:intergenic | 35.0% | |
| TGAATTTGGAAACTCCTTGA+TGG | - | chr4.4:78304817-78304836 | None:intergenic | 35.0% | |
| TGCCATATCAGTTTGAACAA+TGG | - | chr4.4:78306362-78306381 | None:intergenic | 35.0% | |
| ! | AAGTTTTCCGACTGAATTGA+AGG | + | chr4.4:78305587-78305606 | MS.gene50334:CDS | 35.0% |
| ! | AGCTAAACACAGATGCTTTT+GGG | + | chr4.4:78306075-78306094 | MS.gene50334:intron | 35.0% |
| ! | AGCTCACATTAAGACTTTTC+AGG | - | chr4.4:78305166-78305185 | None:intergenic | 35.0% |
| ! | ATATTGCCGACTGAATTGAT+TGG | + | chr4.4:78305685-78305704 | MS.gene50334:intron | 35.0% |
| ! | CATTTTACAAACCACTGTTG+GGG | + | chr4.4:78306125-78306144 | MS.gene50334:CDS | 35.0% |
| ! | CCATTTTACAAACCACTGTT+GGG | + | chr4.4:78306124-78306143 | MS.gene50334:CDS | 35.0% |
| ! | TCCATTTTACAAACCACTGT+TGG | + | chr4.4:78306123-78306142 | MS.gene50334:CDS | 35.0% |
| !! | AATTCAGTTGGTAACCTTAC+TGG | + | chr4.4:78304831-78304850 | MS.gene50334:CDS | 35.0% |
| !! | TCAAGAGATTCCGCTTTTAT+GGG | + | chr4.4:78305476-78305495 | MS.gene50334:CDS | 35.0% |
| !!! | CAAAGTGATCAGTTTTGGAA+GGG | - | chr4.4:78304919-78304938 | None:intergenic | 35.0% |
| !!! | TCAAAGTGATCAGTTTTGGA+AGG | - | chr4.4:78304920-78304939 | None:intergenic | 35.0% |
| AAAAGGCTTGGACATCAGAA+TGG | + | chr4.4:78306021-78306040 | MS.gene50334:intron | 40.0% | |
| AAGTAACAACCGGAAACTTC+CGG | - | chr4.4:78305506-78305525 | None:intergenic | 40.0% | |
| AATTGATTGGAAGGCCATAC+AGG | + | chr4.4:78305698-78305717 | MS.gene50334:intron | 40.0% | |
| ACAAATTGTGATGCCACTAC+CGG | + | chr4.4:78305416-78305435 | MS.gene50334:CDS | 40.0% | |
| ACACAAGCAAGAAACAAGCA+TGG | + | chr4.4:78305767-78305786 | MS.gene50334:intron | 40.0% | |
| ACAGATCCGATAATGCTTTG+TGG | - | chr4.4:78305140-78305159 | None:intergenic | 40.0% | |
| AGAATGGTTACCCTCTTCTT+AGG | - | chr4.4:78306202-78306221 | None:intergenic | 40.0% | |
| AGCCTCCACTTGTTTATTGA+TGG | + | chr4.4:78305624-78305643 | MS.gene50334:CDS | 40.0% | |
| ATTGTAGTTTCCTTCCACCA+AGG | - | chr4.4:78306284-78306303 | None:intergenic | 40.0% | |
| CACATCTTATGGGAAGATGA+GGG | + | chr4.4:78306477-78306496 | MS.gene50334:CDS | 40.0% | |
| CAGATCCGATAATGCTTTGT+GGG | - | chr4.4:78305139-78305158 | None:intergenic | 40.0% | |
| CCCAAAGTTTCCATGAAAGT+TGG | - | chr4.4:78306159-78306178 | None:intergenic | 40.0% | |
| CCTGAAGAACTTCAAATTGC+AGG | + | chr4.4:78305944-78305963 | MS.gene50334:intron | 40.0% | |
| CTATATACTCAAGGCCAGTA+AGG | - | chr4.4:78304848-78304867 | None:intergenic | 40.0% | |
| GCCAACTTTCATGGAAACTT+TGG | + | chr4.4:78306155-78306174 | MS.gene50334:CDS | 40.0% | |
| GGCAAATGGCTATCCAAATT+TGG | + | chr4.4:78305001-78305020 | MS.gene50334:CDS | 40.0% | |
| TCACATCTTATGGGAAGATG+AGG | + | chr4.4:78306476-78306495 | MS.gene50334:CDS | 40.0% | |
| TGATGCCAAAAGAGGTTAGT+GGG | - | chr4.4:78305370-78305389 | None:intergenic | 40.0% | |
| TGCCAATCCTTCAATTCAGT+CGG | - | chr4.4:78305597-78305616 | None:intergenic | 40.0% | |
| TTCCGACTGAATTGAAGGAT+TGG | + | chr4.4:78305592-78305611 | MS.gene50334:CDS | 40.0% | |
| ! | AAGTGATTCATTTGCTGCTC+AGG | - | chr4.4:78305870-78305889 | None:intergenic | 40.0% |
| ! | ATCATCGTGTTTGGTTCCAA+AGG | + | chr4.4:78305839-78305858 | MS.gene50334:intron | 40.0% |
| ! | ATTGATGGTTGCTCTCAACT+TGG | + | chr4.4:78304942-78304961 | MS.gene50334:CDS | 40.0% |
| ! | CCCAACAGTGGTTTGTAAAA+TGG | - | chr4.4:78306127-78306146 | None:intergenic | 40.0% |
| ! | CCTGCAATTTGAAGTTCTTC+AGG | - | chr4.4:78305947-78305966 | None:intergenic | 40.0% |
| ! | GAGCTAAACACAGATGCTTT+TGG | + | chr4.4:78306074-78306093 | MS.gene50334:intron | 40.0% |
| ! | GCTAAACACAGATGCTTTTG+GGG | + | chr4.4:78306076-78306095 | MS.gene50334:intron | 40.0% |
| ! | GTAAACCCACTAACCTCTTT+TGG | + | chr4.4:78305362-78305381 | MS.gene50334:intron | 40.0% |
| ! | TCATCGTGTTTGGTTCCAAA+GGG | + | chr4.4:78305840-78305859 | MS.gene50334:intron | 40.0% |
| ! | TTTGGAACCAAACACGATGA+TGG | - | chr4.4:78305840-78305859 | None:intergenic | 40.0% |
| !! | CTCAAGAGATTCCGCTTTTA+TGG | + | chr4.4:78305475-78305494 | MS.gene50334:CDS | 40.0% |
| !! | GGTTCAAAGAGTACCATACT+GGG | + | chr4.4:78304979-78304998 | MS.gene50334:CDS | 40.0% |
| !! | GTTCAAAGAGTACCATACTG+GGG | + | chr4.4:78304980-78304999 | MS.gene50334:CDS | 40.0% |
| !! | TACTTTAGCATTGGTGTTCC+AGG | + | chr4.4:78305521-78305540 | MS.gene50334:CDS | 40.0% |
| !! | TCCGGTTGTTACTTTAGCAT+TGG | + | chr4.4:78305512-78305531 | MS.gene50334:CDS | 40.0% |
| !! | TTCTAGCCTTGAAGAATCCT+TGG | + | chr4.4:78306264-78306283 | MS.gene50334:CDS | 40.0% |
| !!! | CATTCTGGAATCACCTTTTC+CGG | - | chr4.4:78305438-78305457 | None:intergenic | 40.0% |
| AAGATATTATAGGGCACGGG+TGG | + | chr4.4:78305979-78305998 | MS.gene50334:intron | 45.0% | |
| AAGCCTCAAGACCTAAGAAG+AGG | + | chr4.4:78306188-78306207 | MS.gene50334:CDS | 45.0% | |
| AGCCTCAAGACCTAAGAAGA+GGG | + | chr4.4:78306189-78306208 | MS.gene50334:CDS | 45.0% | |
| ATCCGATAATGCTTTGTGGG+AGG | - | chr4.4:78305136-78305155 | None:intergenic | 45.0% | |
| CGGAAAAGGTGATTCCAGAA+TGG | + | chr4.4:78305436-78305455 | MS.gene50334:CDS | 45.0% | |
| CTCGGCCATCAATAAACAAG+TGG | - | chr4.4:78305632-78305651 | None:intergenic | 45.0% | |
| CTTCCACCAAGGATTCTTCA+AGG | - | chr4.4:78306273-78306292 | None:intergenic | 45.0% | |
| CTTGAAGAATCCTTGGTGGA+AGG | + | chr4.4:78306271-78306290 | MS.gene50334:CDS | 45.0% | |
| GAAACCTGTGATGCCAAAAG+AGG | - | chr4.4:78305378-78305397 | None:intergenic | 45.0% | |
| GAATTGAAATGCCAGCCTTC+AGG | + | chr4.4:78306223-78306242 | MS.gene50334:CDS | 45.0% | |
| GGCCATCAATAAACAAGTGG+AGG | - | chr4.4:78305629-78305648 | None:intergenic | 45.0% | |
| GGCCTTCCAATCAATTCAGT+CGG | - | chr4.4:78305694-78305713 | None:intergenic | 45.0% | |
| GTGATGCCAAAAGAGGTTAG+TGG | - | chr4.4:78305371-78305390 | None:intergenic | 45.0% | |
| TACCCTCTTCTTAGGTCTTG+AGG | - | chr4.4:78306194-78306213 | None:intergenic | 45.0% | |
| TCCGATAATGCTTTGTGGGA+GGG | - | chr4.4:78305135-78305154 | None:intergenic | 45.0% | |
| TTGCTGCAAAGTTTCAACCC+AGG | + | chr4.4:78305888-78305907 | MS.gene50334:intron | 45.0% | |
| ! | ATTGATGGCCGAGAAGTTTG+TGG | + | chr4.4:78305639-78305658 | MS.gene50334:CDS | 45.0% |
| ! | CTAACCTCTTTTGGCATCAC+AGG | + | chr4.4:78305371-78305390 | MS.gene50334:intron | 45.0% |
| ! | TAGCCTTGAAGAATCCTTGG+TGG | + | chr4.4:78306267-78306286 | MS.gene50334:CDS | 45.0% |
| ! | TGCCGACTGAATTGATTGGA+AGG | + | chr4.4:78305689-78305708 | MS.gene50334:intron | 45.0% |
| !! | CGGTTCAAAGAGTACCATAC+TGG | + | chr4.4:78304978-78304997 | MS.gene50334:CDS | 45.0% |
| !! | TTAATGAAAAAAAAAAAAAA+AGG | + | chr4.4:78306004-78306023 | MS.gene50334:intron | 5.0% |
| AATCCCGGCCACAAACTTCT+CGG | - | chr4.4:78305650-78305669 | None:intergenic | 50.0% | |
| ATGTTCTGGCACATGTCTCC+TGG | - | chr4.4:78305909-78305928 | None:intergenic | 50.0% | |
| CAGCAGCATCAAGTGTGTTC+TGG | + | chr4.4:78305267-78305286 | MS.gene50334:intron | 50.0% | |
| CGGCAATATTGAACCTGCAG+CGG | - | chr4.4:78305674-78305693 | None:intergenic | 50.0% | |
| CTGCATGCCATCATCGTGTT+TGG | + | chr4.4:78305830-78305849 | MS.gene50334:intron | 50.0% | |
| GAAGCTTCCTCTGTACCTGA+AGG | - | chr4.4:78306241-78306260 | None:intergenic | 50.0% | |
| GAGTACCATACTGGGGCAAA+TGG | + | chr4.4:78304987-78305006 | MS.gene50334:CDS | 50.0% | |
| GATAGCCATTTGCCCCAGTA+TGG | - | chr4.4:78304995-78305014 | None:intergenic | 50.0% | |
| GGAGTCTGTGCCAACTTTCA+TGG | + | chr4.4:78306146-78306165 | MS.gene50334:CDS | 50.0% | |
| TGTGATGCCACTACCGGAAA+AGG | + | chr4.4:78305422-78305441 | MS.gene50334:CDS | 50.0% | |
| TGTTCTGGCACATGTCTCCT+GGG | - | chr4.4:78305908-78305927 | None:intergenic | 50.0% | |
| TTATGGGAAGATGAGGGCAG+AGG | + | chr4.4:78306483-78306502 | MS.gene50334:CDS | 50.0% | |
| ! | CAAACACGATGATGGCATGC+AGG | - | chr4.4:78305832-78305851 | None:intergenic | 50.0% |
| ! | CGATGATGGCATGCAGGAAA+AGG | - | chr4.4:78305826-78305845 | None:intergenic | 50.0% |
| ! | GCCCTCCCACAAAGCATTAT+CGG | + | chr4.4:78305131-78305150 | MS.gene50334:CDS | 50.0% |
| ! | GGAATCACCTTTTCCGGTAG+TGG | - | chr4.4:78305432-78305451 | None:intergenic | 50.0% |
| ATGCCAGCCTTCAGGTACAG+AGG | + | chr4.4:78306231-78306250 | MS.gene50334:CDS | 55.0% | |
| ATGGCCGAGAAGTTTGTGGC+CGG | + | chr4.4:78305643-78305662 | MS.gene50334:CDS | 55.0% | |
| CTTCCTCTGTACCTGAAGGC+TGG | - | chr4.4:78306237-78306256 | None:intergenic | 55.0% | |
| TGCTGCTCAGGAGAACCCTT+TGG | - | chr4.4:78305858-78305877 | None:intergenic | 55.0% | |
| TTCCGGCGAGCCCATAAAAG+CGG | - | chr4.4:78305489-78305508 | None:intergenic | 55.0% | |
| !! | TTCCGCTTTTATGGGCTCGC+CGG | + | chr4.4:78305484-78305503 | MS.gene50334:CDS | 55.0% |
| ATGGGCTCGCCGGAAGTTTC+CGG | + | chr4.4:78305494-78305513 | MS.gene50334:CDS | 60.0% | |
| TGAACCTGCAGCGGCAATCC+CGG | - | chr4.4:78305665-78305684 | None:intergenic | 60.0% | |
| TGGCACAGACTCCCCAACAG+TGG | - | chr4.4:78306139-78306158 | None:intergenic | 60.0% | |
| TGGCCGAGAAGTTTGTGGCC+GGG | + | chr4.4:78305644-78305663 | MS.gene50334:CDS | 60.0% | |
| GTGGCCGGGATTGCCGCTGC+AGG | + | chr4.4:78305658-78305677 | MS.gene50334:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 78304777 | 78306510 | 78304777 | ID=MS.gene50334 |
| chr4.4 | mRNA | 78304777 | 78306510 | 78304777 | ID=MS.gene50334.t1;Parent=MS.gene50334 |
| chr4.4 | exon | 78304777 | 78305178 | 78304777 | ID=MS.gene50334.t1.exon1;Parent=MS.gene50334.t1 |
| chr4.4 | CDS | 78304777 | 78305178 | 78304777 | ID=cds.MS.gene50334.t1;Parent=MS.gene50334.t1 |
| chr4.4 | exon | 78305393 | 78305679 | 78305393 | ID=MS.gene50334.t1.exon2;Parent=MS.gene50334.t1 |
| chr4.4 | CDS | 78305393 | 78305679 | 78305393 | ID=cds.MS.gene50334.t1;Parent=MS.gene50334.t1 |
| chr4.4 | exon | 78306087 | 78306510 | 78306087 | ID=MS.gene50334.t1.exon3;Parent=MS.gene50334.t1 |
| chr4.4 | CDS | 78306087 | 78306510 | 78306087 | ID=cds.MS.gene50334.t1;Parent=MS.gene50334.t1 |
| Gene Sequence |
| Protein sequence |
