Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50487.t1 | XP_013449740.1 | 91.9 | 284 | 21 | 2 | 1 | 283 | 1 | 283 | 7.90E-132 | 479.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50487.t1 | Q9M1X2 | 59.9 | 279 | 107 | 3 | 1 | 279 | 1 | 274 | 7.1e-73 | 275.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50487.t1 | A0A072U3N8 | 91.9 | 284 | 21 | 2 | 1 | 283 | 1 | 283 | 5.7e-132 | 479.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054917 | MS.gene50487 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene50487 | 0.818969 | 1.48E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50487.t1 | MTR_7g094980 | 92.657 | 286 | 15 | 3 | 1 | 283 | 1 | 283 | 0.0 | 503 |
| MS.gene50487.t1 | MTR_1g015700 | 36.652 | 221 | 126 | 2 | 74 | 283 | 185 | 402 | 2.76e-36 | 134 |
| MS.gene50487.t1 | MTR_1g015700 | 36.667 | 120 | 62 | 2 | 74 | 182 | 185 | 301 | 9.99e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50487.t1 | AT3G63170 | 55.197 | 279 | 120 | 3 | 1 | 279 | 1 | 274 | 9.69e-101 | 296 |
| MS.gene50487.t1 | AT2G26310 | 37.245 | 196 | 117 | 1 | 84 | 273 | 192 | 387 | 1.58e-33 | 126 |
| MS.gene50487.t1 | AT2G26310 | 37.245 | 196 | 117 | 1 | 84 | 273 | 192 | 387 | 1.58e-33 | 126 |
| MS.gene50487.t1 | AT2G26310 | 36.571 | 175 | 105 | 1 | 84 | 252 | 192 | 366 | 7.00e-26 | 105 |
| MS.gene50487.t1 | AT2G26310 | 33.163 | 196 | 100 | 2 | 84 | 273 | 192 | 362 | 9.59e-25 | 102 |
| MS.gene50487.t1 | AT2G26310 | 36.076 | 158 | 94 | 2 | 84 | 234 | 192 | 349 | 5.20e-21 | 91.7 |
Find 77 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGGGATTGAGGTGGTTT+TGG | 0.125570 | 7.3:-16100072 | None:intergenic |
| GTTAAGAAGGAAAAGAATTT+TGG | 0.153628 | 7.3:+16100353 | MS.gene50487:CDS |
| GGCGGCGGCAGCGGCGAATT+TGG | 0.239594 | 7.3:-16100103 | None:intergenic |
| AGCAGCGGCGGCGGCGGCAG+CGG | 0.252364 | 7.3:-16100112 | None:intergenic |
| AGATGTCTGTCTGAGAAATA+TGG | 0.266325 | 7.3:+16100667 | MS.gene50487:CDS |
| TCTCAGAAACTCTGTGGAAT+TGG | 0.270486 | 7.3:+16100330 | MS.gene50487:CDS |
| ACAACTCCTTGCCTCCTCTA+TGG | 0.281256 | 7.3:+16100226 | MS.gene50487:CDS |
| GCTGCCGCCGCCGCCGCTGC+TGG | 0.303820 | 7.3:+16100114 | MS.gene50487:CDS |
| AACATTGATGTATATGCTTT+TGG | 0.326039 | 7.3:+16100384 | MS.gene50487:CDS |
| GGCACCAGCAGCGGCGGCGG+CGG | 0.336618 | 7.3:-16100118 | None:intergenic |
| TCTTTAGCTTGTTTATCAAA+TGG | 0.380206 | 7.3:-16102504 | None:intergenic |
| AGGAGGCAAGGAGTTGTTGT+TGG | 0.380814 | 7.3:-16100220 | None:intergenic |
| CTCCTTGTTTCCCTTCAATT+CGG | 0.387216 | 7.3:-16100704 | None:intergenic |
| CCTCGCCAACGTATAAATCT+AGG | 0.389464 | 7.3:-16102479 | None:intergenic |
| ATAATAAAGAATTGCTTCAT+AGG | 0.390871 | 7.3:+16100866 | MS.gene50487:CDS |
| CTCAGAAACTCTGTGGAATT+GGG | 0.392277 | 7.3:+16100331 | MS.gene50487:CDS |
| CAACTCCTTGCCTCCTCTAT+GGG | 0.401706 | 7.3:+16100227 | MS.gene50487:CDS |
| GGTGGCACCAGCAGCGGCGG+CGG | 0.405249 | 7.3:-16100121 | None:intergenic |
| TCTATGGGGTTCGCTCAGTT+TGG | 0.414133 | 7.3:+16100242 | MS.gene50487:CDS |
| GGAGTTTAATGAGGATCTAC+TGG | 0.431474 | 7.3:+16100723 | MS.gene50487:CDS |
| ACCTACACAGGAGTTTACTT+TGG | 0.433749 | 7.3:-16102452 | None:intergenic |
| GAGAAAGGGCGTGGGGATTG+AGG | 0.441816 | 7.3:-16100081 | None:intergenic |
| ATGATATACATTTAACAGTA+AGG | 0.442640 | 7.3:+16100749 | MS.gene50487:CDS |
| TGCAGTTGACGGACAGGAAG+TGG | 0.444813 | 7.3:+16102422 | MS.gene50487:intron |
| GCGAATTTGGAGAAAGGGCG+TGG | 0.455965 | 7.3:-16100090 | None:intergenic |
| CCGATTGTTGACTCGAGGAC+CGG | 0.457446 | 7.3:+16100279 | MS.gene50487:CDS |
| TGCGGCGGTGGCACCAGCAG+CGG | 0.466631 | 7.3:-16100127 | None:intergenic |
| AACAGAAGGGAACGAGGATC+CGG | 0.468367 | 7.3:-16100298 | None:intergenic |
| GCAGCGGCGAATTTGGAGAA+AGG | 0.485576 | 7.3:-16100096 | None:intergenic |
| CCGGTCCTCGAGTCAACAAT+CGG | 0.486482 | 7.3:-16100279 | None:intergenic |
| AAAGAGACGGTGGCGATCAT+CGG | 0.490260 | 7.3:-16100166 | None:intergenic |
| GGAAGTGAAGAAAGAATTCA+AGG | 0.491421 | 7.3:-16100199 | None:intergenic |
| GATGTCTGTCTGAGAAATAT+GGG | 0.494327 | 7.3:+16100668 | MS.gene50487:CDS |
| AACTTTGGAGGTAAGAAGCC+AGG | 0.495322 | 7.3:-16102542 | None:intergenic |
| TCTGTGGAATTGGGTTAAGA+AGG | 0.500714 | 7.3:+16100340 | MS.gene50487:CDS |
| CTTGTTTCCCTTCAATTCGG+AGG | 0.500783 | 7.3:-16100701 | None:intergenic |
| GGTTGTTGCAGTTGACGGAC+AGG | 0.501877 | 7.3:+16102416 | MS.gene50487:intron |
| TTTGGGTTAGAAAATGTGAA+AGG | 0.508855 | 7.3:-16100054 | None:intergenic |
| GACGGCGATGAATGCGGCGG+TGG | 0.511495 | 7.3:-16100139 | None:intergenic |
| GGCGGTGGCACCAGCAGCGG+CGG | 0.516948 | 7.3:-16100124 | None:intergenic |
| TGAGAAGCTTCAAGAACAGA+AGG | 0.519226 | 7.3:-16100312 | None:intergenic |
| CGAATTTGGAGAAAGGGCGT+GGG | 0.521998 | 7.3:-16100089 | None:intergenic |
| AAAATGTGAAAGGGAAGCGT+AGG | 0.525237 | 7.3:-16100044 | None:intergenic |
| CAGCGGCGAATTTGGAGAAA+GGG | 0.533537 | 7.3:-16100095 | None:intergenic |
| TTGTTTCCCTTCAATTCGGA+GGG | 0.543382 | 7.3:-16100700 | None:intergenic |
| AGTGCATTTGAAGAGTCTGT+TGG | 0.545083 | 7.3:+16100814 | MS.gene50487:CDS |
| CTCCGAATTGAAGGGAAACA+AGG | 0.565305 | 7.3:+16100702 | MS.gene50487:CDS |
| GTGGCGATCATCGGAGGAGA+CGG | 0.566663 | 7.3:-16100157 | None:intergenic |
| TTGGGTTAGAAAATGTGAAA+GGG | 0.569537 | 7.3:-16100053 | None:intergenic |
| AAAGGGCGTGGGGATTGAGG+TGG | 0.570402 | 7.3:-16100078 | None:intergenic |
| CGAACCCCATAGAGGAGGCA+AGG | 0.572793 | 7.3:-16100232 | None:intergenic |
| TCAATCCTAGATTTATACGT+TGG | 0.577790 | 7.3:+16102474 | MS.gene50487:CDS |
| ATTCATCTCACAAGAGAGAA+GGG | 0.583527 | 7.3:+16101345 | MS.gene50487:CDS |
| AATTCATCTCACAAGAGAGA+AGG | 0.588462 | 7.3:+16101344 | MS.gene50487:CDS |
| GGGAAACAAGGAGTTTAATG+AGG | 0.593911 | 7.3:+16100714 | MS.gene50487:CDS |
| AACTCCTTGCCTCCTCTATG+GGG | 0.598308 | 7.3:+16100228 | MS.gene50487:CDS |
| AAATGTGAAAGGGAAGCGTA+GGG | 0.598473 | 7.3:-16100043 | None:intergenic |
| AATCTAGGATTGACCTACAC+AGG | 0.602235 | 7.3:-16102464 | None:intergenic |
| GCAGTTGACGGACAGGAAGT+GGG | 0.604670 | 7.3:+16102423 | MS.gene50487:intron |
| TCGCTCAGTTTGGCTGACAG+TGG | 0.604675 | 7.3:+16100252 | MS.gene50487:CDS |
| GTGTTCCGATTGTTGACTCG+AGG | 0.609856 | 7.3:+16100274 | MS.gene50487:CDS |
| GAATTTGGAGAAAGGGCGTG+GGG | 0.610439 | 7.3:-16100088 | None:intergenic |
| GAGACGGTGGCGATCATCGG+AGG | 0.611190 | 7.3:-16100163 | None:intergenic |
| CCTAGATTTATACGTTGGCG+AGG | 0.617834 | 7.3:+16102479 | MS.gene50487:CDS |
| GGAGGAGACGGCGATGAATG+CGG | 0.618329 | 7.3:-16100145 | None:intergenic |
| ATGAAATCAAAATACCTCGT+GGG | 0.630447 | 7.3:+16101316 | MS.gene50487:CDS |
| TTCAAGAACAGAAGGGAACG+AGG | 0.644777 | 7.3:-16100304 | None:intergenic |
| AAACTGAGCGAACCCCATAG+AGG | 0.661589 | 7.3:-16100240 | None:intergenic |
| GATGAAATCAAAATACCTCG+TGG | 0.663911 | 7.3:+16101315 | MS.gene50487:CDS |
| TCCAAAGTAAACTCCTGTGT+AGG | 0.666013 | 7.3:+16102451 | MS.gene50487:CDS |
| GAGAAGCTTCAAGAACAGAA+GGG | 0.668073 | 7.3:-16100311 | None:intergenic |
| AGAAGAAATAGAGCTCAACC+TGG | 0.668098 | 7.3:+16102524 | MS.gene50487:CDS |
| GAAGCTTCTCAGAAACTCTG+TGG | 0.672841 | 7.3:+16100324 | MS.gene50487:CDS |
| CTGAGCGAACCCCATAGAGG+AGG | 0.675688 | 7.3:-16100237 | None:intergenic |
| GATTGAGCATTCGTTCTGTG+AGG | 0.683191 | 7.3:+16100791 | MS.gene50487:CDS |
| GGAGACGGCGATGAATGCGG+CGG | 0.700801 | 7.3:-16100142 | None:intergenic |
| AGATGAATTACAGACCCACG+AGG | 0.819642 | 7.3:-16101330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAAAAA+AGG | - | chr7.3:16101079-16101098 | None:intergenic | 0.0% |
| !! | ATATAAATGAAATATTATTG+TGG | - | chr7.3:16101679-16101698 | None:intergenic | 10.0% |
| !! | GTAAAATAATTAGATAAAAA+AGG | - | chr7.3:16100443-16100462 | None:intergenic | 10.0% |
| !! | TATAAATGAAATATTATTGT+GGG | - | chr7.3:16101678-16101697 | None:intergenic | 10.0% |
| !! | ATTAGATAAAAAAGGTAAAT+TGG | - | chr7.3:16100435-16100454 | None:intergenic | 15.0% |
| !! | TAGGTTCTTAAAAAAAAAAA+AGG | - | chr7.3:16101998-16102017 | None:intergenic | 15.0% |
| !! | TTCTTATAATGTTTCTTATT+TGG | + | chr7.3:16100592-16100611 | MS.gene50487:intron | 15.0% |
| !!! | TCTTATAATGTTTCTTATTT+GGG | + | chr7.3:16100593-16100612 | MS.gene50487:intron | 15.0% |
| !! | ATAATAAAGAATTGCTTCAT+AGG | + | chr7.3:16100866-16100885 | MS.gene50487:CDS | 20.0% |
| !! | ATGATATACATTTAACAGTA+AGG | + | chr7.3:16100749-16100768 | MS.gene50487:CDS | 20.0% |
| !! | ATTCTAGTAATGTTGAAATA+TGG | + | chr7.3:16101913-16101932 | MS.gene50487:intron | 20.0% |
| !! | GTTCTTAAAAAAAAAAAAGG+AGG | - | chr7.3:16101995-16102014 | None:intergenic | 20.0% |
| !! | TAAAAAAAAAAAAGGAGGTA+AGG | - | chr7.3:16101990-16102009 | None:intergenic | 20.0% |
| !! | TACAGTAAAAAAAAAAGTAG+TGG | - | chr7.3:16101852-16101871 | None:intergenic | 20.0% |
| !! | TTCTAGTAATGTTGAAATAT+GGG | + | chr7.3:16101914-16101933 | MS.gene50487:intron | 20.0% |
| !!! | AAAATTATGTTGTTTGTTGA+AGG | + | chr7.3:16100616-16100635 | MS.gene50487:intron | 20.0% |
| !!! | TTAAGAAGGAAAAGAATTTT+GGG | + | chr7.3:16100354-16100373 | MS.gene50487:CDS | 20.0% |
| ! | AAAATGGAAATGCAAATACA+GGG | - | chr7.3:16101404-16101423 | None:intergenic | 25.0% |
| ! | AAACCTGACAATTTGATTAT+TGG | + | chr7.3:16101871-16101890 | MS.gene50487:intron | 25.0% |
| ! | ACCCATTTCCTTAAAATAAT+GGG | - | chr7.3:16101706-16101725 | None:intergenic | 25.0% |
| ! | GAAGAAAAAGATACAAACAA+AGG | - | chr7.3:16101047-16101066 | None:intergenic | 25.0% |
| ! | TATCCAATAATCAAATTGTC+AGG | - | chr7.3:16101877-16101896 | None:intergenic | 25.0% |
| !! | AACATTGATGTATATGCTTT+TGG | + | chr7.3:16100384-16100403 | MS.gene50487:CDS | 25.0% |
| !! | AATTCTGAAAGTTGAGAAAA+TGG | - | chr7.3:16101420-16101439 | None:intergenic | 25.0% |
| !! | CTTTGATGTTAATTTTGTCT+TGG | + | chr7.3:16102395-16102414 | MS.gene50487:intron | 25.0% |
| !! | GTTAAGAAGGAAAAGAATTT+TGG | + | chr7.3:16100353-16100372 | MS.gene50487:CDS | 25.0% |
| !!! | ACTTGAGTTTTCTTTTTCAT+AGG | + | chr7.3:16100905-16100924 | MS.gene50487:intron | 25.0% |
| !!! | ATACTCGCTTTTTTTTTTTG+TGG | - | chr7.3:16102120-16102139 | None:intergenic | 25.0% |
| !!! | ATATCTTCCCCATTATTTTA+AGG | + | chr7.3:16101695-16101714 | MS.gene50487:intron | 25.0% |
| !!! | TCTTTAGCTTGTTTATCAAA+TGG | - | chr7.3:16102507-16102526 | None:intergenic | 25.0% |
| AACTAAAACACCTAATACTG+GGG | - | chr7.3:16102328-16102347 | None:intergenic | 30.0% | |
| AATTCAAGTCCTCTAATCAT+TGG | + | chr7.3:16101503-16101522 | MS.gene50487:intron | 30.0% | |
| AGCAGAAAAGATACAAACAA+AGG | - | chr7.3:16101108-16101127 | None:intergenic | 30.0% | |
| ATGAAATCAAAATACCTCGT+GGG | + | chr7.3:16101316-16101335 | MS.gene50487:CDS | 30.0% | |
| CAACTAAAACACCTAATACT+GGG | - | chr7.3:16102329-16102348 | None:intergenic | 30.0% | |
| CACCCATTTCCTTAAAATAA+TGG | - | chr7.3:16101707-16101726 | None:intergenic | 30.0% | |
| CCCATTTCCTTAAAATAATG+GGG | - | chr7.3:16101705-16101724 | None:intergenic | 30.0% | |
| CTTGTGTAATTGCTTATACT+CGG | + | chr7.3:16102204-16102223 | MS.gene50487:intron | 30.0% | |
| GAAAATGGAAATGCAAATAC+AGG | - | chr7.3:16101405-16101424 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr7.3:16102072-16102091 | MS.gene50487:intron | 30.0% | |
| TAAGTATCAAGTACCTTACA+CGG | + | chr7.3:16102161-16102180 | MS.gene50487:intron | 30.0% | |
| TCAATCCTAGATTTATACGT+TGG | + | chr7.3:16102474-16102493 | MS.gene50487:CDS | 30.0% | |
| TCAATGCTAAATCACAACAA+GGG | + | chr7.3:16102371-16102390 | MS.gene50487:intron | 30.0% | |
| ! | ACTTGGAATACAGTTTTCAA+TGG | - | chr7.3:16101184-16101203 | None:intergenic | 30.0% |
| ! | GGTAAGGTTTAAGTGTTATT+AGG | - | chr7.3:16101974-16101993 | None:intergenic | 30.0% |
| ! | GGTTTAAGTGTTATTAGGTT+CGG | - | chr7.3:16101969-16101988 | None:intergenic | 30.0% |
| ! | TAACTGATTGAATTTGCTTG+CGG | + | chr7.3:16100499-16100518 | MS.gene50487:intron | 30.0% |
| ! | TATTTTACCAAGATTCTGCA+TGG | + | chr7.3:16100455-16100474 | MS.gene50487:intron | 30.0% |
| ! | TGAATTTTTCACAGTCAACA+TGG | - | chr7.3:16100570-16100589 | None:intergenic | 30.0% |
| ! | TTGGGTTAGAAAATGTGAAA+GGG | - | chr7.3:16100056-16100075 | None:intergenic | 30.0% |
| ! | TTTGGGTTAGAAAATGTGAA+AGG | - | chr7.3:16100057-16100076 | None:intergenic | 30.0% |
| !! | TTCTGAAATCCAATGATTAG+AGG | - | chr7.3:16101515-16101534 | None:intergenic | 30.0% |
| !!! | CATTATTTTAAGGAAATGGG+TGG | + | chr7.3:16101705-16101724 | MS.gene50487:intron | 30.0% |
| !!! | CCCCATTATTTTAAGGAAAT+GGG | + | chr7.3:16101702-16101721 | MS.gene50487:intron | 30.0% |
| !!! | TCCCCATTATTTTAAGGAAA+TGG | + | chr7.3:16101701-16101720 | MS.gene50487:intron | 30.0% |
| !!! | TTAGGTGTTTTAGTTGCTTT+TGG | + | chr7.3:16102333-16102352 | MS.gene50487:intron | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGCT+GGG | - | chr7.3:16102112-16102131 | None:intergenic | 30.0% |
| AAAAAAGTAGTGGCAGATCA+TGG | - | chr7.3:16101842-16101861 | None:intergenic | 35.0% | |
| AATTCATCTCACAAGAGAGA+AGG | + | chr7.3:16101344-16101363 | MS.gene50487:CDS | 35.0% | |
| ACTAAAACACCTAATACTGG+GGG | - | chr7.3:16102327-16102346 | None:intergenic | 35.0% | |
| AGATGTCTGTCTGAGAAATA+TGG | + | chr7.3:16100667-16100686 | MS.gene50487:CDS | 35.0% | |
| ATTCATCTCACAAGAGAGAA+GGG | + | chr7.3:16101345-16101364 | MS.gene50487:CDS | 35.0% | |
| CACTCAGTTGGATTTACATA+TGG | - | chr7.3:16101238-16101257 | None:intergenic | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | + | chr7.3:16102079-16102098 | MS.gene50487:intron | 35.0% | |
| GAATTGCTTCATAGGTGAAA+TGG | + | chr7.3:16100874-16100893 | MS.gene50487:intron | 35.0% | |
| GATGAAATCAAAATACCTCG+TGG | + | chr7.3:16101315-16101334 | MS.gene50487:CDS | 35.0% | |
| GATGTCTGTCTGAGAAATAT+GGG | + | chr7.3:16100668-16100687 | MS.gene50487:CDS | 35.0% | |
| GCAACTAAAACACCTAATAC+TGG | - | chr7.3:16102330-16102349 | None:intergenic | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | + | chr7.3:16102078-16102097 | MS.gene50487:intron | 35.0% | |
| GGAAGTGAAGAAAGAATTCA+AGG | - | chr7.3:16100202-16100221 | None:intergenic | 35.0% | |
| GGTTAAACTTTCAACTCAGT+TGG | + | chr7.3:16102225-16102244 | MS.gene50487:intron | 35.0% | |
| GTCAATGCTAAATCACAACA+AGG | + | chr7.3:16102370-16102389 | MS.gene50487:intron | 35.0% | |
| TAAGATTCATGTAGCCAGTT+TGG | - | chr7.3:16101636-16101655 | None:intergenic | 35.0% | |
| TGATATACCACATTCCAAAC+TGG | + | chr7.3:16101619-16101638 | MS.gene50487:intron | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | + | chr7.3:16102077-16102096 | MS.gene50487:intron | 35.0% | |
| TGGTGATTTCAAATTCGAAC+TGG | + | chr7.3:16102245-16102264 | MS.gene50487:intron | 35.0% | |
| ! | AGGCATTTTGTAGAAAGAGA+CGG | - | chr7.3:16100182-16100201 | None:intergenic | 35.0% |
| ! | AGTATTGAGTCTAACCGAAA+GGG | + | chr7.3:16101589-16101608 | MS.gene50487:intron | 35.0% |
| ! | AGTTTGGAATGTGGTATATC+AGG | - | chr7.3:16101620-16101639 | None:intergenic | 35.0% |
| ! | GTTTGGAATGTGGTATATCA+GGG | - | chr7.3:16101619-16101638 | None:intergenic | 35.0% |
| ! | TAGTATTGAGTCTAACCGAA+AGG | + | chr7.3:16101588-16101607 | MS.gene50487:intron | 35.0% |
| ! | TATACTCGCTCTTTTAAGCA+GGG | - | chr7.3:16102024-16102043 | None:intergenic | 35.0% |
| ! | TCAACAAATTTTCTCGTGAG+AGG | - | chr7.3:16101214-16101233 | None:intergenic | 35.0% |
| ! | TTATACTCGCTCTTTTAAGC+AGG | - | chr7.3:16102025-16102044 | None:intergenic | 35.0% |
| ! | TTTGGAATGTGGTATATCAG+GGG | - | chr7.3:16101618-16101637 | None:intergenic | 35.0% |
| !!! | CTCGCTTTTTTTTTTTGTGG+TGG | - | chr7.3:16102117-16102136 | None:intergenic | 35.0% |
| !!! | CTTTTTTTTTTTGTGGTGGC+TGG | - | chr7.3:16102113-16102132 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCTG+GGG | - | chr7.3:16102111-16102130 | None:intergenic | 35.0% |
| AAACCTACATCAAAGCATGC+TGG | - | chr7.3:16101280-16101299 | None:intergenic | 40.0% | |
| AAGCCGATTGCAAAAATACG+GGG | + | chr7.3:16100837-16100856 | MS.gene50487:CDS | 40.0% | |
| AATCCTTCACAAATTGGCCA+TGG | - | chr7.3:16101794-16101813 | None:intergenic | 40.0% | |
| ACCTACACAGGAGTTTACTT+TGG | - | chr7.3:16102455-16102474 | None:intergenic | 40.0% | |
| AGAAGAAATAGAGCTCAACC+TGG | + | chr7.3:16102524-16102543 | MS.gene50487:CDS | 40.0% | |
| AGTGCATTTGAAGAGTCTGT+TGG | + | chr7.3:16100814-16100833 | MS.gene50487:CDS | 40.0% | |
| ATGGCCACCATATAATACCA+TGG | - | chr7.3:16101823-16101842 | None:intergenic | 40.0% | |
| CAACATGGAATTCACTCAGT+TGG | - | chr7.3:16101250-16101269 | None:intergenic | 40.0% | |
| CTACCAGTGTTGCCAAATAT+CGG | + | chr7.3:16101733-16101752 | MS.gene50487:intron | 40.0% | |
| CTCAGAAACTCTGTGGAATT+GGG | + | chr7.3:16100331-16100350 | MS.gene50487:CDS | 40.0% | |
| GAAGCCGATTGCAAAAATAC+GGG | + | chr7.3:16100836-16100855 | MS.gene50487:CDS | 40.0% | |
| GAGAAGCTTCAAGAACAGAA+GGG | - | chr7.3:16100314-16100333 | None:intergenic | 40.0% | |
| GGAAGCCGATTGCAAAAATA+CGG | + | chr7.3:16100835-16100854 | MS.gene50487:CDS | 40.0% | |
| GGAGTTTAATGAGGATCTAC+TGG | + | chr7.3:16100723-16100742 | MS.gene50487:CDS | 40.0% | |
| GGGAAACAAGGAGTTTAATG+AGG | + | chr7.3:16100714-16100733 | MS.gene50487:CDS | 40.0% | |
| TAACCAGCATGCTTTGATGT+AGG | + | chr7.3:16101274-16101293 | MS.gene50487:intron | 40.0% | |
| TCCAAAGTAAACTCCTGTGT+AGG | + | chr7.3:16102451-16102470 | MS.gene50487:CDS | 40.0% | |
| TCGTGAGAGGAATAAACACT+TGG | - | chr7.3:16101201-16101220 | None:intergenic | 40.0% | |
| TCTCAGAAACTCTGTGGAAT+TGG | + | chr7.3:16100330-16100349 | MS.gene50487:CDS | 40.0% | |
| TCTGTGGAATTGGGTTAAGA+AGG | + | chr7.3:16100340-16100359 | MS.gene50487:CDS | 40.0% | |
| TGAGAAGCTTCAAGAACAGA+AGG | - | chr7.3:16100315-16100334 | None:intergenic | 40.0% | |
| TGGAAATGCAAATACAGGGA+AGG | - | chr7.3:16101400-16101419 | None:intergenic | 40.0% | |
| TTGTTTCCCTTCAATTCGGA+GGG | - | chr7.3:16100703-16100722 | None:intergenic | 40.0% | |
| ! | AAAATGTGAAAGGGAAGCGT+AGG | - | chr7.3:16100047-16100066 | None:intergenic | 40.0% |
| ! | AAATGTGAAAGGGAAGCGTA+GGG | - | chr7.3:16100046-16100065 | None:intergenic | 40.0% |
| ! | AATCTAGGATTGACCTACAC+AGG | - | chr7.3:16102467-16102486 | None:intergenic | 40.0% |
| ! | ATACTCGCTCTTTTAAGCAG+GGG | - | chr7.3:16102023-16102042 | None:intergenic | 40.0% |
| ! | ATTTTCTCCCTCCGAATTGA+AGG | + | chr7.3:16100693-16100712 | MS.gene50487:CDS | 40.0% |
| ! | CATGCTGGTTAACTACAACA+TGG | - | chr7.3:16101265-16101284 | None:intergenic | 40.0% |
| ! | CATTTTGTAGAAAGAGACGG+TGG | - | chr7.3:16100179-16100198 | None:intergenic | 40.0% |
| ! | CTCCTTGTTTCCCTTCAATT+CGG | - | chr7.3:16100707-16100726 | None:intergenic | 40.0% |
| ! | TTTTCTCCCTCCGAATTGAA+GGG | + | chr7.3:16100694-16100713 | MS.gene50487:CDS | 40.0% |
| !! | AACCCCCGTATTTTTGCAAT+CGG | - | chr7.3:16100843-16100862 | None:intergenic | 40.0% |
| !! | GGGGCTCTAAAAATTTGCAT+GGG | - | chr7.3:16102308-16102327 | None:intergenic | 40.0% |
| !!! | AGATTTTTTGACAGCAGCCA+TGG | + | chr7.3:16101774-16101793 | MS.gene50487:intron | 40.0% |
| !!! | TTTTTAGAGCCCCCAGTATT+AGG | + | chr7.3:16102315-16102334 | MS.gene50487:intron | 40.0% |
| AATTACACAAGAGAACCGCG+CGG | - | chr7.3:16102195-16102214 | None:intergenic | 45.0% | |
| AGATGAATTACAGACCCACG+AGG | - | chr7.3:16101333-16101352 | None:intergenic | 45.0% | |
| AGCCGATTGCAAAAATACGG+GGG | + | chr7.3:16100838-16100857 | MS.gene50487:CDS | 45.0% | |
| CCTAGATTTATACGTTGGCG+AGG | + | chr7.3:16102479-16102498 | MS.gene50487:CDS | 45.0% | |
| CCTCGCCAACGTATAAATCT+AGG | - | chr7.3:16102482-16102501 | None:intergenic | 45.0% | |
| CGCCACAATCCTTCACAAAT+TGG | - | chr7.3:16101800-16101819 | None:intergenic | 45.0% | |
| CTCCGAATTGAAGGGAAACA+AGG | + | chr7.3:16100702-16100721 | MS.gene50487:CDS | 45.0% | |
| CTTGTTTCCCTTCAATTCGG+AGG | - | chr7.3:16100704-16100723 | None:intergenic | 45.0% | |
| GAAGCTTCTCAGAAACTCTG+TGG | + | chr7.3:16100324-16100343 | MS.gene50487:CDS | 45.0% | |
| GATTGAGCATTCGTTCTGTG+AGG | + | chr7.3:16100791-16100810 | MS.gene50487:CDS | 45.0% | |
| GGCCAATTTGTGAAGGATTG+TGG | + | chr7.3:16101795-16101814 | MS.gene50487:intron | 45.0% | |
| GTCTTGGTTGTTGCAGTTGA+CGG | + | chr7.3:16102411-16102430 | MS.gene50487:intron | 45.0% | |
| TAGCCGATATTTGGCAACAC+TGG | - | chr7.3:16101739-16101758 | None:intergenic | 45.0% | |
| TATATCAGGGGACACCCTTT+CGG | - | chr7.3:16101606-16101625 | None:intergenic | 45.0% | |
| TGTGGCGCCATGGTATTATA+TGG | + | chr7.3:16101813-16101832 | MS.gene50487:intron | 45.0% | |
| TTCAAGAACAGAAGGGAACG+AGG | - | chr7.3:16100307-16100326 | None:intergenic | 45.0% | |
| TTGCTTGCCATGCAGAATCT+TGG | - | chr7.3:16100465-16100484 | None:intergenic | 45.0% | |
| ! | AACTTTGGAGGTAAGAAGCC+AGG | - | chr7.3:16102545-16102564 | None:intergenic | 45.0% |
| ! | CATGTAGCCAGTTTGGAATG+TGG | - | chr7.3:16101629-16101648 | None:intergenic | 45.0% |
| ! | GTGTTGCCAAATATCGGCTA+TGG | + | chr7.3:16101739-16101758 | MS.gene50487:intron | 45.0% |
| ! | TTGCCAAATATCGGCTATGG+CGG | + | chr7.3:16101742-16101761 | MS.gene50487:intron | 45.0% |
| !! | GCTCTTTTAAGCAGGGGTAT+AGG | - | chr7.3:16102017-16102036 | None:intergenic | 45.0% |
| !! | GGGGGCTCTAAAAATTTGCA+TGG | - | chr7.3:16102309-16102328 | None:intergenic | 45.0% |
| AAACTGAGCGAACCCCATAG+AGG | - | chr7.3:16100243-16100262 | None:intergenic | 50.0% | |
| AAAGAGACGGTGGCGATCAT+CGG | - | chr7.3:16100169-16100188 | None:intergenic | 50.0% | |
| AACAGAAGGGAACGAGGATC+CGG | - | chr7.3:16100301-16100320 | None:intergenic | 50.0% | |
| AACTCCTTGCCTCCTCTATG+GGG | + | chr7.3:16100228-16100247 | MS.gene50487:CDS | 50.0% | |
| ACAACTCCTTGCCTCCTCTA+TGG | + | chr7.3:16100226-16100245 | MS.gene50487:CDS | 50.0% | |
| AGGAGGCAAGGAGTTGTTGT+TGG | - | chr7.3:16100223-16100242 | None:intergenic | 50.0% | |
| CAACTCCTTGCCTCCTCTAT+GGG | + | chr7.3:16100227-16100246 | MS.gene50487:CDS | 50.0% | |
| CAGCCATGGCCAATTTGTGA+AGG | + | chr7.3:16101788-16101807 | MS.gene50487:intron | 50.0% | |
| CAGCGGCGAATTTGGAGAAA+GGG | - | chr7.3:16100098-16100117 | None:intergenic | 50.0% | |
| GGCGCCATGGTATTATATGG+TGG | + | chr7.3:16101816-16101835 | MS.gene50487:intron | 50.0% | |
| TCTATGGGGTTCGCTCAGTT+TGG | + | chr7.3:16100242-16100261 | MS.gene50487:CDS | 50.0% | |
| ! | CGAATTTGGAGAAAGGGCGT+GGG | - | chr7.3:16100092-16100111 | None:intergenic | 50.0% |
| ! | GAATTTGGAGAAAGGGCGTG+GGG | - | chr7.3:16100091-16100110 | None:intergenic | 50.0% |
| ! | GTGGGGATTGAGGTGGTTTT+GGG | - | chr7.3:16100074-16100093 | None:intergenic | 50.0% |
| !! | GTGTTCCGATTGTTGACTCG+AGG | + | chr7.3:16100274-16100293 | MS.gene50487:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACG+AGG | - | chr7.3:16102050-16102069 | None:intergenic | 55.0% | |
| CCGGTCCTCGAGTCAACAAT+CGG | - | chr7.3:16100282-16100301 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | + | chr7.3:16102047-16102066 | MS.gene50487:intron | 55.0% | |
| CGTGAGCTTAGCTCAGTTGG+TGG | + | chr7.3:16102050-16102069 | MS.gene50487:intron | 55.0% | |
| GCACCGCCATAGCCGATATT+TGG | - | chr7.3:16101748-16101767 | None:intergenic | 55.0% | |
| GCAGCGGCGAATTTGGAGAA+AGG | - | chr7.3:16100099-16100118 | None:intergenic | 55.0% | |
| GCGAATTTGGAGAAAGGGCG+TGG | - | chr7.3:16100093-16100112 | None:intergenic | 55.0% | |
| TACACGGTTATACCTCCGCG+CGG | + | chr7.3:16102177-16102196 | MS.gene50487:intron | 55.0% | |
| TCGCTCAGTTTGGCTGACAG+TGG | + | chr7.3:16100252-16100271 | MS.gene50487:CDS | 55.0% | |
| TGTGAAGGATTGTGGCGCCA+TGG | + | chr7.3:16101803-16101822 | MS.gene50487:intron | 55.0% | |
| ! | CGCGGAGGTATAACCGTGTA+AGG | - | chr7.3:16102177-16102196 | None:intergenic | 55.0% |
| ! | CGTGGGGATTGAGGTGGTTT+TGG | - | chr7.3:16100075-16100094 | None:intergenic | 55.0% |
| ! | GCAGTTGACGGACAGGAAGT+GGG | + | chr7.3:16102423-16102442 | MS.gene50487:intron | 55.0% |
| ! | GGTTGTTGCAGTTGACGGAC+AGG | + | chr7.3:16102416-16102435 | MS.gene50487:intron | 55.0% |
| ! | TGCAGTTGACGGACAGGAAG+TGG | + | chr7.3:16102422-16102441 | MS.gene50487:intron | 55.0% |
| !! | CCGATTGTTGACTCGAGGAC+CGG | + | chr7.3:16100279-16100298 | MS.gene50487:CDS | 55.0% |
| CGAACCCCATAGAGGAGGCA+AGG | - | chr7.3:16100235-16100254 | None:intergenic | 60.0% | |
| CTGAGCGAACCCCATAGAGG+AGG | - | chr7.3:16100240-16100259 | None:intergenic | 60.0% | |
| GGAGGAGACGGCGATGAATG+CGG | - | chr7.3:16100148-16100167 | None:intergenic | 60.0% | |
| GTGGCGATCATCGGAGGAGA+CGG | - | chr7.3:16100160-16100179 | None:intergenic | 60.0% | |
| TACACAAGAGAACCGCGCGG+AGG | - | chr7.3:16102192-16102211 | None:intergenic | 60.0% | |
| ! | AAAGGGCGTGGGGATTGAGG+TGG | - | chr7.3:16100081-16100100 | None:intergenic | 60.0% |
| ! | GAGAAAGGGCGTGGGGATTG+AGG | - | chr7.3:16100084-16100103 | None:intergenic | 60.0% |
| GAGACGGTGGCGATCATCGG+AGG | - | chr7.3:16100166-16100185 | None:intergenic | 65.0% | |
| GGAGACGGCGATGAATGCGG+CGG | - | chr7.3:16100145-16100164 | None:intergenic | 65.0% | |
| GACGGCGATGAATGCGGCGG+TGG | - | chr7.3:16100142-16100161 | None:intergenic | 70.0% | |
| GGCGGCGGCAGCGGCGAATT+TGG | - | chr7.3:16100106-16100125 | None:intergenic | 75.0% | |
| TGCGGCGGTGGCACCAGCAG+CGG | - | chr7.3:16100130-16100149 | None:intergenic | 75.0% | |
| ! | GGCGGTGGCACCAGCAGCGG+CGG | - | chr7.3:16100127-16100146 | None:intergenic | 80.0% |
| ! | GGTGGCACCAGCAGCGGCGG+CGG | - | chr7.3:16100124-16100143 | None:intergenic | 80.0% |
| ! | AGCAGCGGCGGCGGCGGCAG+CGG | - | chr7.3:16100115-16100134 | None:intergenic | 85.0% |
| ! | GGCACCAGCAGCGGCGGCGG+CGG | - | chr7.3:16100121-16100140 | None:intergenic | 85.0% |
| ! | GCTGCCGCCGCCGCCGCTGC+TGG | + | chr7.3:16100114-16100133 | MS.gene50487:CDS | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 16100036 | 16102566 | 16100036 | ID=MS.gene50487 |
| chr7.3 | mRNA | 16100036 | 16102566 | 16100036 | ID=MS.gene50487.t1;Parent=MS.gene50487 |
| chr7.3 | exon | 16100036 | 16100405 | 16100036 | ID=MS.gene50487.t1.exon1;Parent=MS.gene50487.t1 |
| chr7.3 | CDS | 16100036 | 16100405 | 16100036 | ID=cds.MS.gene50487.t1;Parent=MS.gene50487.t1 |
| chr7.3 | exon | 16100638 | 16100887 | 16100638 | ID=MS.gene50487.t1.exon2;Parent=MS.gene50487.t1 |
| chr7.3 | CDS | 16100638 | 16100887 | 16100638 | ID=cds.MS.gene50487.t1;Parent=MS.gene50487.t1 |
| chr7.3 | exon | 16101296 | 16101387 | 16101296 | ID=MS.gene50487.t1.exon3;Parent=MS.gene50487.t1 |
| chr7.3 | CDS | 16101296 | 16101387 | 16101296 | ID=cds.MS.gene50487.t1;Parent=MS.gene50487.t1 |
| chr7.3 | exon | 16102427 | 16102566 | 16102427 | ID=MS.gene50487.t1.exon4;Parent=MS.gene50487.t1 |
| chr7.3 | CDS | 16102427 | 16102566 | 16102427 | ID=cds.MS.gene50487.t1;Parent=MS.gene50487.t1 |
| Gene Sequence |
| Protein sequence |
