Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054917.t1 | KEH22222.1 | 99.2 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 4.4e-309 | 1069.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054917.t1 | F4J117 | 67.9 | 530 | 165 | 4 | 3 | 530 | 64 | 590 | 2.2e-216 | 753.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054917.t1 | A0A072TXQ6 | 99.2 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 3.2e-309 | 1069.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene054917 | 0.805262 | 1.45E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene054917 | 0.818507 | 1.89E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene054917 | 0.816026 | 6.84E-52 | -1.69E-46 |
| MS.gene051588 | MS.gene054917 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene054917 | 0.818652 | 1.75E-52 | -1.69E-46 |
| MS.gene052982 | MS.gene054917 | 0.820034 | 8.49E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene054918 | 0.855238 | 7.21E-62 | -1.69E-46 |
| MS.gene054917 | MS.gene055116 | 0.805804 | 1.12E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene056497 | 0.82617 | 3.14E-54 | -1.69E-46 |
| MS.gene054917 | MS.gene057749 | 0.801164 | 1.02E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene057823 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene057825 | 0.816305 | 5.92E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene058700 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene05886 | 0.85265 | 4.02E-61 | -1.69E-46 |
| MS.gene054917 | MS.gene059141 | 0.815908 | 7.26E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene060403 | 0.807523 | 4.85E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene063114 | 0.815195 | 1.05E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene064237 | 0.831754 | 1.40E-55 | -1.69E-46 |
| MS.gene054917 | MS.gene065472 | -0.817288 | 3.56E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene066847 | 0.80035 | 1.50E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene068612 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene069395 | 0.823723 | 1.19E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene069525 | 0.808811 | 2.58E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene069712 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene069859 | 0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene069861 | 0.814269 | 1.68E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene070108 | 0.852058 | 5.92E-61 | -1.69E-46 |
| MS.gene054917 | MS.gene071060 | 0.837836 | 4.11E-57 | -1.69E-46 |
| MS.gene054917 | MS.gene07214 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene072415 | 0.831002 | 2.14E-55 | -1.69E-46 |
| MS.gene054917 | MS.gene072679 | 0.808916 | 2.45E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene07366 | 0.842204 | 2.98E-58 | -1.69E-46 |
| MS.gene054917 | MS.gene073723 | 0.811955 | 5.40E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene07862 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene08208 | 0.843361 | 1.47E-58 | -1.69E-46 |
| MS.gene054917 | MS.gene09660 | 0.804009 | 2.65E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene20025 | 0.818264 | 2.15E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene20910 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene21502 | 0.807502 | 4.90E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene21564 | 0.804017 | 2.64E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene21675 | 0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene22295 | 0.820279 | 7.46E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene22296 | 0.840079 | 1.08E-57 | -1.69E-46 |
| MS.gene054917 | MS.gene22641 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene22721 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene22846 | 0.805324 | 1.41E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene22985 | 0.83172 | 1.42E-55 | -1.69E-46 |
| MS.gene054917 | MS.gene26065 | 0.82334 | 1.46E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene27514 | 0.804406 | 2.19E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene27912 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene28113 | 0.81967 | 1.03E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene28311 | 0.807058 | 6.08E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene28314 | 0.819874 | 9.24E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene28441 | 0.803323 | 3.68E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene29105 | 0.845179 | 4.77E-59 | -1.69E-46 |
| MS.gene054917 | MS.gene29833 | 0.804532 | 2.06E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene30306 | 0.823847 | 1.11E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene30733 | 0.804437 | 2.16E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene30884 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene31030 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene33072 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene34308 | 0.806767 | 7.01E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene36864 | 0.846592 | 1.97E-59 | -1.69E-46 |
| MS.gene054917 | MS.gene39051 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene39277 | 0.805584 | 1.24E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene39334 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene39429 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene40406 | 0.818453 | 1.95E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene41713 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene43917 | 0.821207 | 4.56E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene43919 | 0.807202 | 5.67E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene44809 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene45108 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene46956 | 0.823732 | 1.18E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene47758 | 0.837938 | 3.87E-57 | -1.69E-46 |
| MS.gene054917 | MS.gene47869 | 0.833883 | 4.13E-56 | -1.69E-46 |
| MS.gene054917 | MS.gene50483 | 0.817151 | 3.83E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene50487 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene50573 | 0.832857 | 7.44E-56 | -1.69E-46 |
| MS.gene054917 | MS.gene51193 | 0.811321 | 7.42E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene51389 | 0.844843 | 5.88E-59 | -1.69E-46 |
| MS.gene054917 | MS.gene52324 | 0.822257 | 2.61E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene52600 | 0.807314 | 5.37E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene52755 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene53332 | 0.801572 | 8.45E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene55270 | 0.829218 | 5.82E-55 | -1.69E-46 |
| MS.gene054917 | MS.gene56177 | 0.80288 | 4.55E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene57561 | 0.80429 | 2.32E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene58252 | 0.803998 | 2.67E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene58345 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene58480 | 0.80042 | 1.45E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene59608 | 0.812017 | 5.24E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene60915 | 0.855009 | 8.41E-62 | -1.69E-46 |
| MS.gene054917 | MS.gene61579 | 0.808971 | 2.38E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene62822 | 0.823255 | 1.53E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene65859 | 0.809805 | 1.58E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene66157 | 0.811796 | 5.85E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene66847 | 0.815379 | 9.53E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene67422 | 0.809967 | 1.46E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene67875 | 0.806795 | 6.92E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene68108 | 0.820434 | 6.88E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene68315 | 0.80016 | 1.64E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene68419 | 0.821403 | 4.11E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene68421 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene68434 | 0.823743 | 1.18E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene70072 | 0.814413 | 1.56E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene70077 | 0.816953 | 4.24E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene73228 | 0.823107 | 1.66E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene75176 | 0.800767 | 1.24E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene75325 | 0.803173 | 3.96E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene77334 | 0.837072 | 6.45E-57 | -1.69E-46 |
| MS.gene054917 | MS.gene77474 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene78436 | 0.80242 | 5.66E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene79179 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene79947 | 0.823523 | 1.32E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene80224 | 0.84174 | 3.95E-58 | -1.69E-46 |
| MS.gene054917 | MS.gene81586 | 0.810055 | 1.39E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene82533 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene83703 | 0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene85703 | 0.823563 | 1.29E-53 | -1.69E-46 |
| MS.gene054917 | MS.gene85919 | 0.834841 | 2.37E-56 | -1.69E-46 |
| MS.gene054917 | MS.gene86055 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene054917 | MS.gene87271 | 0.815671 | 8.20E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene88978 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene90772 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene90870 | 0.810231 | 1.28E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene92773 | 0.818676 | 1.73E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene95383 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene054917 | MS.gene95707 | 0.828325 | 9.57E-55 | -1.69E-46 |
| MS.gene054917 | MS.gene96945 | 0.814506 | 1.49E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene97211 | 0.818068 | 2.38E-52 | -1.69E-46 |
| MS.gene054917 | MS.gene98808 | 0.805518 | 1.28E-49 | -1.69E-46 |
| MS.gene054917 | MS.gene99535 | 0.813336 | 2.69E-51 | -1.69E-46 |
| MS.gene054917 | MS.gene99854 | 0.800704 | 1.27E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054917.t1 | MTR_7g034465 | 99.245 | 530 | 4 | 0 | 1 | 530 | 1 | 530 | 0.0 | 1103 |
| MS.gene054917.t1 | MTR_7g034465 | 98.004 | 451 | 9 | 0 | 1 | 451 | 107 | 557 | 0.0 | 926 |
| MS.gene054917.t1 | MTR_1g090867 | 32.246 | 276 | 167 | 10 | 222 | 489 | 94 | 357 | 6.96e-35 | 135 |
| MS.gene054917.t1 | MTR_3g094300 | 39.773 | 176 | 104 | 2 | 208 | 381 | 72 | 247 | 1.31e-31 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054917.t1 | AT3G01510 | 67.297 | 529 | 170 | 3 | 3 | 530 | 64 | 590 | 0.0 | 754 |
| MS.gene054917.t1 | AT3G01510 | 66.444 | 450 | 148 | 3 | 82 | 530 | 1 | 448 | 0.0 | 634 |
| MS.gene054917.t1 | AT3G01510 | 66.444 | 450 | 148 | 3 | 82 | 530 | 1 | 448 | 0.0 | 634 |
| MS.gene054917.t1 | AT3G52180 | 31.518 | 257 | 163 | 7 | 209 | 461 | 74 | 321 | 2.16e-34 | 134 |
| MS.gene054917.t1 | AT3G52180 | 31.064 | 235 | 150 | 6 | 230 | 461 | 1 | 226 | 5.72e-31 | 122 |
| MS.gene054917.t1 | AT3G52180 | 35.593 | 177 | 110 | 4 | 209 | 382 | 74 | 249 | 2.93e-28 | 114 |
| MS.gene054917.t1 | AT3G52180 | 35.593 | 177 | 110 | 4 | 209 | 382 | 74 | 249 | 4.71e-28 | 114 |
| MS.gene054917.t1 | AT3G10940 | 34.091 | 176 | 114 | 2 | 208 | 381 | 68 | 243 | 1.70e-27 | 112 |
Find 116 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATACTATGTACAACTATT+TGG | 0.167005 | 7.3:+63566583 | None:intergenic |
| TAGTGGTTCCTTCCAATTTC+CGG | 0.216287 | 7.3:+63567219 | None:intergenic |
| GTGGAACTGAAGCTGAAAAT+TGG | 0.234882 | 7.3:-63571531 | MS.gene054917:CDS |
| AATAAAAGCCCAACACAAAA+TGG | 0.242291 | 7.3:+63571025 | None:intergenic |
| TACTACAAGTTCATAGTTAA+TGG | 0.245936 | 7.3:-63566952 | MS.gene054917:CDS |
| CCCCGATGCTTTGCCTTTAG+TGG | 0.262670 | 7.3:+63567202 | None:intergenic |
| AGTGATAGCTGTGGGAATTC+TGG | 0.278980 | 7.3:-63572486 | MS.gene054917:CDS |
| CCCTACATGCAGCCCATACT+TGG | 0.283293 | 7.3:-63570898 | MS.gene054917:CDS |
| GCAGCCCATACTTGGGTTAC+TGG | 0.321128 | 7.3:-63570890 | MS.gene054917:CDS |
| TCCACTTGAGGAATATATTC+AGG | 0.341950 | 7.3:-63572286 | MS.gene054917:CDS |
| TATACTATGTACAACTATTT+GGG | 0.358127 | 7.3:+63566584 | None:intergenic |
| GCATTCCAGTAACCCAAGTA+TGG | 0.361671 | 7.3:+63570885 | None:intergenic |
| TGGAACTGAAGCTGAAAATT+GGG | 0.363423 | 7.3:-63571530 | MS.gene054917:CDS |
| TTTCCACGTCATCTCCTGTT+TGG | 0.364566 | 7.3:+63572052 | None:intergenic |
| CGATTTGCTCTTACTTCTGA+TGG | 0.373647 | 7.3:-63574761 | MS.gene054917:CDS |
| CATGTTGCCCATGCAATTGC+CGG | 0.376920 | 7.3:+63567738 | None:intergenic |
| TCAAAGTTTCTTAATTCAAA+TGG | 0.388446 | 7.3:-63572447 | MS.gene054917:CDS |
| ACCACTAAAGGCAAAGCATC+GGG | 0.395885 | 7.3:-63567203 | MS.gene054917:CDS |
| CTTATTATGCAGCAGTTGAA+TGG | 0.397899 | 7.3:+63572599 | None:intergenic |
| TCATCATCAACTATCCTATA+CGG | 0.410245 | 7.3:-63571459 | MS.gene054917:intron |
| AAGCGAGTAGAGATGGAGAT+TGG | 0.415212 | 7.3:-63572323 | MS.gene054917:CDS |
| GAATGCTTTACTAACCCCTT+TGG | 0.415445 | 7.3:+63574715 | None:intergenic |
| GGAGAAGTCCAGGATAATTA+TGG | 0.416680 | 7.3:-63573784 | MS.gene054917:CDS |
| TGGACCCTAGATTACCGTAT+AGG | 0.418003 | 7.3:+63571445 | None:intergenic |
| CCGCTGTCATCCCTTTCAGC+TGG | 0.425643 | 7.3:+63566904 | None:intergenic |
| CCAAGTATGGGCTGCATGTA+GGG | 0.425803 | 7.3:+63570898 | None:intergenic |
| CGGCAATTGCATGGGCAACA+TGG | 0.433325 | 7.3:-63567737 | MS.gene054917:CDS |
| GTTAACAATATAATAATGAT+TGG | 0.448260 | 7.3:-63566877 | MS.gene054917:CDS |
| GTCATCTCCTGTTTGGATGC+AGG | 0.449317 | 7.3:+63572059 | None:intergenic |
| GTTACTCTGGATAAGCCTCT+TGG | 0.464429 | 7.3:-63574788 | MS.gene054917:CDS |
| GTGGGATCCTGCATCCAAAC+AGG | 0.468080 | 7.3:-63572066 | MS.gene054917:CDS |
| AACATCTTCACCAGCTGAAA+GGG | 0.471958 | 7.3:-63566914 | MS.gene054917:CDS |
| TGCACACGTGCAGGCCTGAC+AGG | 0.474667 | 7.3:-63570865 | MS.gene054917:intron |
| TTTCCTCAGGAAGGTGCTAA+AGG | 0.475366 | 7.3:-63572673 | MS.gene054917:intron |
| TTCCCACAGCTATCACTAGA+TGG | 0.476938 | 7.3:+63572492 | None:intergenic |
| ACTGCAGGCCGGCAATTGCA+TGG | 0.478258 | 7.3:-63567746 | MS.gene054917:intron |
| TCTTGGTATGCGTTATAGTA+AGG | 0.480275 | 7.3:-63572223 | MS.gene054917:intron |
| TCGTTCACTCTCTCGCCAAA+GGG | 0.481175 | 7.3:-63574730 | MS.gene054917:CDS |
| TTTCAGCTTCAGTTCCACTT+TGG | 0.489822 | 7.3:+63571536 | None:intergenic |
| CAATGAGTATCTTGTTACTC+TGG | 0.490395 | 7.3:-63574801 | MS.gene054917:CDS |
| AGCGAGTAGAGATGGAGATT+GGG | 0.494191 | 7.3:-63572322 | MS.gene054917:CDS |
| GATTACCGAGCAAATATATG+TGG | 0.494561 | 7.3:-63572085 | MS.gene054917:CDS |
| TTATTATGCAGCAGTTGAAT+GGG | 0.498131 | 7.3:+63572600 | None:intergenic |
| ATCGTTCACTCTCTCGCCAA+AGG | 0.499803 | 7.3:-63574731 | MS.gene054917:CDS |
| ATAAAAGCCCAACACAAAAT+GGG | 0.499871 | 7.3:+63571026 | None:intergenic |
| ATTTCTTTCACCGTGGGTGA+TGG | 0.504844 | 7.3:+63572392 | None:intergenic |
| GGGGAGGATGTAAATTTGGT+TGG | 0.505086 | 7.3:-63567250 | MS.gene054917:CDS |
| GATCTTATAGCTATGGTTGA+AGG | 0.508873 | 7.3:-63567714 | MS.gene054917:CDS |
| CCCAAGTATGGGCTGCATGT+AGG | 0.511263 | 7.3:+63570897 | None:intergenic |
| GCAAGAATAACTAACCTGTC+AGG | 0.512789 | 7.3:+63570851 | None:intergenic |
| AGGGTAATGCGGAGAAGTCC+AGG | 0.513501 | 7.3:-63573794 | MS.gene054917:CDS |
| CTTGCACTTCTGGATTTGAT+CGG | 0.516485 | 7.3:-63570967 | MS.gene054917:CDS |
| GGCAATTGCATGGGCAACAT+GGG | 0.519858 | 7.3:-63567736 | MS.gene054917:CDS |
| GTCACCCACCATAATTATCC+TGG | 0.521511 | 7.3:+63573776 | None:intergenic |
| GCCTGAATATATTCCTCAAG+TGG | 0.522255 | 7.3:+63572285 | None:intergenic |
| AGGAGATGACGTGGAAACCT+TGG | 0.524257 | 7.3:-63572046 | MS.gene054917:CDS |
| CTGCAGGCCGGCAATTGCAT+GGG | 0.526196 | 7.3:-63567745 | MS.gene054917:intron |
| CTTGAAATAGTATATAATAG+AGG | 0.527177 | 7.3:-63572567 | MS.gene054917:CDS |
| TATTTGGGAGCTAATCTGAC+AGG | 0.531178 | 7.3:+63566599 | None:intergenic |
| AAATTGGAAGGAACCACTAA+AGG | 0.533229 | 7.3:-63567215 | MS.gene054917:CDS |
| ATTATAGTACATCTCATCCT+TGG | 0.534194 | 7.3:+63572251 | None:intergenic |
| CAACATCTTCACCAGCTGAA+AGG | 0.536122 | 7.3:-63566915 | MS.gene054917:CDS |
| TTACTGGAATGCACACGTGC+AGG | 0.539687 | 7.3:-63570874 | MS.gene054917:CDS |
| GATTTGCTCTTACTTCTGAT+GGG | 0.541109 | 7.3:-63574760 | MS.gene054917:CDS |
| AACCACTAAAGGCAAAGCAT+CGG | 0.543234 | 7.3:-63567204 | MS.gene054917:CDS |
| ACTGACGAAGCGAGTAGAGA+TGG | 0.549177 | 7.3:-63572330 | MS.gene054917:CDS |
| ATGTACTATAATCACTCTCT+TGG | 0.549559 | 7.3:-63572240 | MS.gene054917:CDS |
| AACATGGGATCTTATAGCTA+TGG | 0.554777 | 7.3:-63567721 | MS.gene054917:CDS |
| CCTACATGCAGCCCATACTT+GGG | 0.555261 | 7.3:-63570897 | MS.gene054917:CDS |
| CAATCAATGACTATTGTCAA+AGG | 0.562058 | 7.3:-63571492 | MS.gene054917:CDS |
| AGGTATGCAATCACACAAGC+AGG | 0.569325 | 7.3:+63570941 | None:intergenic |
| AAACATCTGTCATCCAATGT+AGG | 0.571704 | 7.3:+63570921 | None:intergenic |
| GTAGGATGCTAATGTTGTAA+AGG | 0.573787 | 7.3:-63566699 | MS.gene054917:intron |
| GGAAACCTTGGCAAAAGTTG+AGG | 0.576323 | 7.3:-63572034 | MS.gene054917:intron |
| TGAATGGGAAATGTAGATGC+GGG | 0.577092 | 7.3:+63572615 | None:intergenic |
| GTCGAGTTTCTGTTGTCACA+TGG | 0.580119 | 7.3:-63572545 | MS.gene054917:CDS |
| CATTCCAGTAACCCAAGTAT+GGG | 0.581390 | 7.3:+63570886 | None:intergenic |
| AGAGATGGAGATTGGGCACA+CGG | 0.589638 | 7.3:-63572315 | MS.gene054917:CDS |
| GGTGACACTTTGAAGAAAGC+TGG | 0.592970 | 7.3:-63573759 | MS.gene054917:CDS |
| ATGTTGTAAAGGTGATTGAA+AGG | 0.598764 | 7.3:-63566688 | MS.gene054917:CDS |
| CACAAATGTGACAGCATGTG+TGG | 0.600778 | 7.3:+63567674 | None:intergenic |
| TAACGAATTTCTTTCACCGT+GGG | 0.604263 | 7.3:+63572386 | None:intergenic |
| AGTTCATAGTTAATGGACAA+TGG | 0.607642 | 7.3:-63566945 | MS.gene054917:CDS |
| GGATCCCACATATATTTGCT+CGG | 0.608187 | 7.3:+63572080 | None:intergenic |
| GAAGTCCAGGATAATTATGG+TGG | 0.610755 | 7.3:-63573781 | MS.gene054917:CDS |
| CTAGCTGAGATTAAAGACGT+TGG | 0.615319 | 7.3:-63573717 | MS.gene054917:CDS |
| GCTGTCACATTTGTGTGGAA+TGG | 0.617368 | 7.3:-63567666 | MS.gene054917:CDS |
| GCTGTTCTGAACTTCCAAAG+TGG | 0.617537 | 7.3:-63571550 | MS.gene054917:CDS |
| AACCATCTAGTGATAGCTGT+GGG | 0.620367 | 7.3:-63572494 | MS.gene054917:CDS |
| CACATGCTGTCACATTTGTG+TGG | 0.626265 | 7.3:-63567671 | MS.gene054917:CDS |
| ATGGAGATTCTTATGACATG+AGG | 0.627266 | 7.3:-63571057 | MS.gene054917:CDS |
| CATCCAAACAGGAGATGACG+TGG | 0.632871 | 7.3:-63572055 | MS.gene054917:CDS |
| TTGAATGGGAAATGTAGATG+CGG | 0.634352 | 7.3:+63572614 | None:intergenic |
| GGAACTGAAGCTGAAAATTG+GGG | 0.634841 | 7.3:-63571529 | MS.gene054917:CDS |
| CAACCATCTAGTGATAGCTG+TGG | 0.635422 | 7.3:-63572495 | MS.gene054917:CDS |
| CTTATAGCTATGGTTGAAGG+TGG | 0.641208 | 7.3:-63567711 | MS.gene054917:CDS |
| CTGAACAGAAGGACGAACGC+TGG | 0.641353 | 7.3:+63566846 | None:intergenic |
| GAGTAACAAGATACTCATTG+AGG | 0.646559 | 7.3:+63574804 | None:intergenic |
| ATTACCGAGCAAATATATGT+GGG | 0.647709 | 7.3:-63572084 | MS.gene054917:CDS |
| GTAGAAGTTAAGCTTCCGCA+AGG | 0.658658 | 7.3:-63567163 | MS.gene054917:CDS |
| CGTTCACTCTCTCGCCAAAG+GGG | 0.659149 | 7.3:-63574729 | MS.gene054917:intron |
| AATCAACATGCCATCACCCA+CGG | 0.660027 | 7.3:-63572402 | MS.gene054917:CDS |
| GTGTGATTGCATACCTACAT+TGG | 0.665139 | 7.3:-63570934 | MS.gene054917:CDS |
| TAGCACACATACTTTCCTTG+CGG | 0.665443 | 7.3:+63567148 | None:intergenic |
| AAGTCCAGGATAATTATGGT+GGG | 0.667424 | 7.3:-63573780 | MS.gene054917:CDS |
| CTCAGCTAGACTATTCTGAG+AGG | 0.668370 | 7.3:+63573731 | None:intergenic |
| AGAGCAAATCGAATACCAAG+AGG | 0.669016 | 7.3:+63574773 | None:intergenic |
| TCAGGCTCTAGATCGTGCCA+AGG | 0.672514 | 7.3:-63572268 | MS.gene054917:CDS |
| ATTTGGGAGCTAATCTGACA+GGG | 0.675948 | 7.3:+63566600 | None:intergenic |
| CTAAAGGCAAAGCATCGGGG+TGG | 0.681617 | 7.3:-63567199 | MS.gene054917:CDS |
| CATGTGTGGGAGCATCATGT+TGG | 0.696530 | 7.3:+63567688 | None:intergenic |
| TTAACGAATTTCTTTCACCG+TGG | 0.706941 | 7.3:+63572385 | None:intergenic |
| ATTTGTGTGGAATGGTCATG+AGG | 0.717145 | 7.3:-63567658 | MS.gene054917:intron |
| ACAAATGTGACAGCATGTGT+GGG | 0.717710 | 7.3:+63567675 | None:intergenic |
| CCACTAAAGGCAAAGCATCG+GGG | 0.727485 | 7.3:-63567202 | MS.gene054917:CDS |
| CCAGCTGAAAGGGATGACAG+CGG | 0.743968 | 7.3:-63566904 | MS.gene054917:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 63566598 | 63574861 | 63566598 | ID=MS.gene054917 |
| chr7.3 | mRNA | 63566598 | 63574861 | 63566598 | ID=MS.gene054917.t1;Parent=MS.gene054917 |
| chr7.3 | exon | 63574730 | 63574861 | 63574730 | ID=MS.gene054917.t1.exon1;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63574730 | 63574861 | 63574730 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63573708 | 63573814 | 63573708 | ID=MS.gene054917.t1.exon2;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63573708 | 63573814 | 63573708 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63572224 | 63572686 | 63572224 | ID=MS.gene054917.t1.exon3;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63572224 | 63572686 | 63572224 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63572035 | 63572106 | 63572035 | ID=MS.gene054917.t1.exon4;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63572035 | 63572106 | 63572035 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63571460 | 63571581 | 63571460 | ID=MS.gene054917.t1.exon5;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63571460 | 63571581 | 63571460 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63570866 | 63571081 | 63570866 | ID=MS.gene054917.t1.exon6;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63570866 | 63571081 | 63570866 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63567659 | 63567761 | 63567659 | ID=MS.gene054917.t1.exon7;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63567659 | 63567761 | 63567659 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63567160 | 63567272 | 63567160 | ID=MS.gene054917.t1.exon8;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63567160 | 63567272 | 63567160 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63566834 | 63566978 | 63566834 | ID=MS.gene054917.t1.exon9;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63566834 | 63566978 | 63566834 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| chr7.3 | exon | 63566598 | 63566717 | 63566598 | ID=MS.gene054917.t1.exon10;Parent=MS.gene054917.t1 |
| chr7.3 | CDS | 63566598 | 63566717 | 63566598 | ID=cds.MS.gene054917.t1;Parent=MS.gene054917.t1 |
| Gene Sequence |
| Protein sequence |
