Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50679.t1 | XP_003607111.1 | 88.5 | 321 | 17 | 1 | 1 | 301 | 1 | 321 | 1.00E-161 | 579.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50679.t1 | E7C196 | 56.3 | 323 | 114 | 2 | 5 | 300 | 4 | 326 | 1.7e-101 | 370.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50679.t1 | G7JL33 | 88.5 | 321 | 17 | 1 | 1 | 301 | 1 | 321 | 7.3e-162 | 579.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056748 | MS.gene50679 | 0.835111 | 2.03E-56 | -1.69E-46 |
| MS.gene057820 | MS.gene50679 | 0.861314 | 1.12E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50679.t1 | MTR_4g072350 | 88.474 | 321 | 17 | 1 | 1 | 301 | 1 | 321 | 0.0 | 580 |
| MS.gene50679.t1 | MTR_4g072360 | 84.062 | 320 | 31 | 1 | 1 | 300 | 1 | 320 | 0.0 | 548 |
| MS.gene50679.t1 | MTR_4g072320 | 79.688 | 320 | 39 | 3 | 1 | 300 | 1 | 314 | 0.0 | 513 |
| MS.gene50679.t1 | MTR_6g073110 | 58.176 | 318 | 113 | 1 | 1 | 298 | 1 | 318 | 9.42e-139 | 395 |
| MS.gene50679.t1 | MTR_0374s0050 | 49.536 | 323 | 132 | 3 | 1 | 300 | 1 | 315 | 3.14e-106 | 312 |
| MS.gene50679.t1 | MTR_3g083130 | 46.106 | 321 | 137 | 7 | 3 | 298 | 4 | 313 | 1.79e-90 | 272 |
| MS.gene50679.t1 | MTR_4g036845 | 43.354 | 316 | 156 | 5 | 5 | 300 | 2 | 314 | 9.45e-83 | 252 |
| MS.gene50679.t1 | MTR_8g070095 | 42.812 | 313 | 152 | 6 | 11 | 300 | 10 | 318 | 1.46e-80 | 247 |
| MS.gene50679.t1 | MTR_5g097900 | 43.478 | 322 | 147 | 8 | 1 | 298 | 1 | 311 | 2.10e-77 | 238 |
| MS.gene50679.t1 | MTR_5g097910 | 44.518 | 301 | 141 | 6 | 1 | 278 | 1 | 298 | 5.39e-77 | 237 |
| MS.gene50679.t1 | MTR_5g097940 | 44.518 | 301 | 141 | 6 | 1 | 278 | 1 | 298 | 5.39e-77 | 237 |
| MS.gene50679.t1 | MTR_8g070115 | 40.439 | 319 | 163 | 5 | 3 | 300 | 2 | 314 | 1.44e-74 | 231 |
| MS.gene50679.t1 | MTR_6g072650 | 70.000 | 150 | 23 | 1 | 152 | 301 | 10 | 137 | 4.90e-70 | 213 |
| MS.gene50679.t1 | MTR_7g063580 | 42.308 | 312 | 150 | 7 | 11 | 300 | 50 | 353 | 7.58e-70 | 220 |
| MS.gene50679.t1 | MTR_4g021350 | 39.748 | 317 | 150 | 9 | 11 | 300 | 10 | 312 | 1.07e-68 | 216 |
| MS.gene50679.t1 | MTR_4g021410 | 40.645 | 310 | 144 | 8 | 11 | 298 | 11 | 302 | 1.38e-63 | 203 |
| MS.gene50679.t1 | MTR_4g021450 | 39.130 | 322 | 156 | 8 | 1 | 300 | 1 | 304 | 3.06e-62 | 199 |
| MS.gene50679.t1 | MTR_4g021410 | 42.238 | 277 | 125 | 6 | 43 | 298 | 3 | 265 | 1.17e-59 | 191 |
| MS.gene50679.t1 | MTR_4g021350 | 38.966 | 290 | 137 | 8 | 11 | 274 | 10 | 285 | 4.26e-59 | 191 |
| MS.gene50679.t1 | MTR_7g070500 | 36.656 | 311 | 165 | 9 | 11 | 298 | 17 | 318 | 8.49e-58 | 188 |
| MS.gene50679.t1 | MTR_7g070500 | 35.689 | 283 | 153 | 6 | 11 | 273 | 17 | 290 | 2.96e-51 | 171 |
| MS.gene50679.t1 | MTR_4g072060 | 36.054 | 294 | 156 | 7 | 9 | 274 | 3 | 292 | 3.10e-51 | 171 |
| MS.gene50679.t1 | MTR_4g021410 | 45.545 | 202 | 96 | 4 | 98 | 298 | 38 | 226 | 2.21e-50 | 166 |
| MS.gene50679.t1 | MTR_4g021450 | 44.608 | 204 | 99 | 4 | 98 | 300 | 38 | 228 | 1.28e-49 | 164 |
| MS.gene50679.t1 | MTR_4g021450 | 45.989 | 187 | 95 | 3 | 115 | 300 | 4 | 185 | 1.24e-48 | 160 |
| MS.gene50679.t1 | MTR_6g072710 | 62.832 | 113 | 42 | 0 | 170 | 282 | 1 | 113 | 5.33e-48 | 156 |
| MS.gene50679.t1 | MTR_6g072705 | 75.472 | 53 | 12 | 1 | 80 | 132 | 34 | 85 | 2.04e-22 | 89.4 |
| MS.gene50679.t1 | MTR_3g092140 | 23.469 | 294 | 156 | 7 | 35 | 274 | 72 | 350 | 4.25e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50679.t1 | AT1G59960 | 44.923 | 325 | 154 | 3 | 1 | 300 | 1 | 325 | 2.09e-103 | 305 |
| MS.gene50679.t1 | AT1G59950 | 44.918 | 305 | 147 | 3 | 17 | 300 | 15 | 319 | 8.93e-94 | 280 |
| MS.gene50679.t1 | AT2G37790 | 45.192 | 312 | 141 | 6 | 11 | 300 | 10 | 313 | 1.13e-85 | 259 |
| MS.gene50679.t1 | AT2G37770 | 44.375 | 320 | 149 | 6 | 3 | 300 | 2 | 314 | 3.81e-84 | 256 |
| MS.gene50679.t1 | AT5G62420 | 42.444 | 311 | 155 | 6 | 11 | 300 | 8 | 315 | 4.95e-79 | 243 |
| MS.gene50679.t1 | AT3G53880 | 43.590 | 312 | 147 | 6 | 11 | 300 | 10 | 314 | 6.94e-79 | 242 |
| MS.gene50679.t1 | AT2G37760 | 41.158 | 311 | 152 | 5 | 11 | 300 | 10 | 310 | 1.44e-74 | 231 |
| MS.gene50679.t1 | AT2G37760 | 41.158 | 311 | 152 | 5 | 11 | 300 | 10 | 310 | 1.44e-74 | 231 |
| MS.gene50679.t1 | AT2G37760 | 40.972 | 288 | 140 | 4 | 11 | 278 | 10 | 287 | 2.60e-68 | 214 |
| MS.gene50679.t1 | AT2G37760 | 40.972 | 288 | 140 | 4 | 11 | 278 | 10 | 287 | 2.60e-68 | 214 |
| MS.gene50679.t1 | AT2G37760 | 41.259 | 286 | 138 | 4 | 11 | 276 | 10 | 285 | 3.87e-68 | 214 |
| MS.gene50679.t1 | AT3G53880 | 42.807 | 285 | 135 | 5 | 11 | 274 | 10 | 287 | 4.05e-68 | 215 |
| MS.gene50679.t1 | AT5G01670 | 38.462 | 312 | 158 | 9 | 11 | 298 | 18 | 319 | 3.82e-65 | 207 |
| MS.gene50679.t1 | AT5G01670 | 35.398 | 339 | 158 | 9 | 11 | 298 | 18 | 346 | 6.50e-61 | 197 |
| MS.gene50679.t1 | AT2G37760 | 41.538 | 260 | 128 | 4 | 62 | 300 | 8 | 264 | 1.24e-59 | 191 |
| MS.gene50679.t1 | AT2G37760 | 41.538 | 260 | 128 | 4 | 62 | 300 | 8 | 264 | 1.24e-59 | 191 |
| MS.gene50679.t1 | AT2G21260 | 34.915 | 295 | 160 | 6 | 8 | 274 | 2 | 292 | 2.56e-57 | 187 |
| MS.gene50679.t1 | AT2G21250 | 34.237 | 295 | 162 | 6 | 8 | 274 | 2 | 292 | 2.15e-56 | 184 |
| MS.gene50679.t1 | AT2G37770 | 45.238 | 210 | 87 | 5 | 3 | 191 | 2 | 204 | 1.66e-51 | 171 |
| MS.gene50679.t1 | AT2G21250 | 34.322 | 236 | 123 | 6 | 8 | 215 | 2 | 233 | 1.48e-39 | 139 |
| MS.gene50679.t1 | AT2G21260 | 33.668 | 199 | 122 | 3 | 86 | 274 | 26 | 224 | 9.74e-38 | 134 |
Find 76 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4.3:-33504437 | MS.gene50679:CDS |
| ATTAACAGCAGGAGAGATTT+TGG | 0.226195 | 4.3:+33503893 | None:intergenic |
| ACGTCTTGTTTCAACCTTAC+TGG | 0.266387 | 4.3:+33504068 | None:intergenic |
| TTTGGCACTTTCTAAGAGTA+TGG | 0.273981 | 4.3:+33503911 | None:intergenic |
| GTTGAAGGCCATAACTTTAA+AGG | 0.283083 | 4.3:-33504047 | MS.gene50679:CDS |
| TTGGTTGATGCCATTGAAAT+AGG | 0.299974 | 4.3:-33504418 | MS.gene50679:CDS |
| AATATGCCAATGATAGGTTT+TGG | 0.303449 | 4.3:-33504487 | MS.gene50679:CDS |
| TATCCTCACCTTTAAAGTTA+TGG | 0.331649 | 4.3:+33504039 | None:intergenic |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4.3:+33503096 | None:intergenic |
| TGACACCAATAGACTTTGAT+AGG | 0.343698 | 4.3:+33503958 | None:intergenic |
| TATGGAAGATTGTTATAGAT+TGG | 0.350814 | 4.3:-33503982 | MS.gene50679:CDS |
| AATCTCTCCTGCTGTTAATC+AGG | 0.358117 | 4.3:-33503889 | MS.gene50679:intron |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4.3:-33503043 | MS.gene50679:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4.3:-33502957 | MS.gene50679:CDS |
| CCAGAGGTGATACTAAATTC+AGG | 0.400690 | 4.3:-33504514 | MS.gene50679:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4.3:-33503042 | MS.gene50679:CDS |
| TGGATCTCTATTTGATTCAC+TGG | 0.404097 | 4.3:-33504091 | MS.gene50679:CDS |
| AGGAGGGTACAAACTAAGTT+GGG | 0.414798 | 4.3:-33503511 | MS.gene50679:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4.3:+33504481 | None:intergenic |
| AATGAACCCATCATGGCATC+AGG | 0.424956 | 4.3:-33503592 | MS.gene50679:CDS |
| ATGGAAGATTGTTATAGATT+GGG | 0.428752 | 4.3:-33503981 | MS.gene50679:CDS |
| TCTATTGGTGTCAGTAACTT+TGG | 0.433819 | 4.3:-33503948 | MS.gene50679:CDS |
| ATTTGATTCACTGGCCAGTA+AGG | 0.449094 | 4.3:-33504082 | MS.gene50679:CDS |
| TAATGGACCTTACAAGTCAT+TGG | 0.455554 | 4.3:-33502940 | MS.gene50679:CDS |
| AAATCTTGAATTGGAGTATG+TGG | 0.465434 | 4.3:-33504111 | MS.gene50679:CDS |
| CCTGAATTTAGTATCACCTC+TGG | 0.467537 | 4.3:+33504514 | None:intergenic |
| AGTTTCCCCTGATGCCATGA+TGG | 0.469908 | 4.3:+33503585 | None:intergenic |
| TCCTCAATGCAGACTGCTAA+AGG | 0.470577 | 4.3:-33502982 | MS.gene50679:CDS |
| TTGTTGAAGCTCTTCACAAT+GGG | 0.474196 | 4.3:+33503080 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4.3:-33504000 | MS.gene50679:CDS |
| GTTTCCCCTGATGCCATGAT+GGG | 0.491620 | 4.3:+33503586 | None:intergenic |
| AATGGCATCAACCAAAATTG+AGG | 0.495834 | 4.3:+33504426 | None:intergenic |
| TTGGGCCTATCAAAGTCTAT+TGG | 0.496646 | 4.3:-33503963 | MS.gene50679:CDS |
| TTGGGGTTCGCCTGCAGTGA+TGG | 0.500062 | 4.3:-33503493 | MS.gene50679:CDS |
| TAGGAGGGTACAAACTAAGT+TGG | 0.507601 | 4.3:-33503512 | MS.gene50679:CDS |
| ATCGAATTCTCCATCACTGC+AGG | 0.507726 | 4.3:+33503483 | None:intergenic |
| CAGAGGTGATACTAAATTCA+GGG | 0.521393 | 4.3:-33504513 | MS.gene50679:CDS |
| TTATACAGATAGCACTAAGA+TGG | 0.527906 | 4.3:-33503124 | MS.gene50679:intron |
| GTGTCAAAAGCTTTAGAGCT+AGG | 0.527948 | 4.3:-33504337 | MS.gene50679:CDS |
| CAAGTCATTGGAAGAGCTGT+GGG | 0.528282 | 4.3:-33502928 | MS.gene50679:CDS |
| TAGAAAGAAGAGTATAGCCC+AGG | 0.534817 | 4.3:-33503439 | MS.gene50679:intron |
| AGCTCTTCCAATGACTTGTA+AGG | 0.535075 | 4.3:+33502933 | None:intergenic |
| GCCTTTAGCAGTCTGCATTG+AGG | 0.539010 | 4.3:+33502981 | None:intergenic |
| ATGCCTGTAGCCTATTTCAA+TGG | 0.544065 | 4.3:+33504408 | None:intergenic |
| ATGCCATTGAAATAGGCTAC+AGG | 0.548301 | 4.3:-33504411 | MS.gene50679:CDS |
| CTTGTTGAAGCTCTTCACAA+TGG | 0.556325 | 4.3:+33503079 | None:intergenic |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.561027 | 4.3:-33503561 | MS.gene50679:CDS |
| AGGACTTCATGTGGTGGAGA+GGG | 0.561027 | 4.3:+33504451 | None:intergenic |
| TCATATACCTGATTAACAGC+AGG | 0.569876 | 4.3:+33503882 | None:intergenic |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4.3:-33503109 | MS.gene50679:CDS |
| AGGTGGAAATGAACCCATCA+TGG | 0.580827 | 4.3:-33503599 | MS.gene50679:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4.3:-33503531 | MS.gene50679:CDS |
| TGAACCCATCATGGCATCAG+GGG | 0.585439 | 4.3:-33503590 | MS.gene50679:CDS |
| AAGGAATCCATGTGAGTGCA+TGG | 0.586898 | 4.3:-33503542 | MS.gene50679:CDS |
| ACAAGTCATTGGAAGAGCTG+TGG | 0.592554 | 4.3:-33502929 | MS.gene50679:CDS |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4.3:-33504367 | MS.gene50679:CDS |
| GAGGACTTCATGTGGTGGAG+AGG | 0.594677 | 4.3:+33504450 | None:intergenic |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4.3:+33504352 | None:intergenic |
| ATGAACCCATCATGGCATCA+GGG | 0.601111 | 4.3:-33503591 | MS.gene50679:CDS |
| AGGCCATAACTTTAAAGGTG+AGG | 0.603244 | 4.3:-33504042 | MS.gene50679:CDS |
| CATTGTGAAGAGCTTCAACA+AGG | 0.610965 | 4.3:-33503078 | MS.gene50679:CDS |
| GTGGTGACCATGCACTCACA+TGG | 0.614668 | 4.3:+33503535 | None:intergenic |
| CTTAGTTTGTACCCTCCTAG+TGG | 0.627177 | 4.3:+33503516 | None:intergenic |
| AGGTTGAAACAAGACGTTGA+AGG | 0.628014 | 4.3:-33504062 | MS.gene50679:CDS |
| TGAAGAGCTTCAACAAGGAG+AGG | 0.630692 | 4.3:-33503073 | MS.gene50679:CDS |
| TCATTGGAAGAGCTGTGGGA+TGG | 0.633458 | 4.3:-33502924 | MS.gene50679:CDS |
| GATTCTGCGCAAAATTGCTG+AGG | 0.639021 | 4.3:-33503463 | MS.gene50679:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.651978 | 4.3:-33503528 | MS.gene50679:CDS |
| GGAAACAAACAAAGTTCCAG+AGG | 0.669203 | 4.3:-33504530 | MS.gene50679:CDS |
| GGAGGGTACAAACTAAGTTG+GGG | 0.682661 | 4.3:-33503510 | MS.gene50679:CDS |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4.3:-33503110 | MS.gene50679:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.683706 | 4.3:+33504431 | None:intergenic |
| GTGCATGGTCACCACTAGGA+GGG | 0.685225 | 4.3:-33503527 | MS.gene50679:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4.3:-33503108 | MS.gene50679:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4.3:+33504445 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4.3:+33504442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTGAATTATAAAAT+AGG | + | chr4.3:33504127-33504146 | None:intergenic | 10.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | - | chr4.3:33504403-33504422 | MS.gene50679:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | - | chr4.3:33504404-33504423 | MS.gene50679:CDS | 15.0% |
| !! | AACTTCATTAAAATCTTAAT+TGG | + | chr4.3:33504090-33504109 | None:intergenic | 15.0% |
| !!! | ATTTTTTAGAAATCTTGAAT+TGG | - | chr4.3:33503326-33503345 | MS.gene50679:intron | 15.0% |
| !!! | TATTATTGTTTTGGTTTTTT+TGG | - | chr4.3:33503297-33503316 | MS.gene50679:intron | 15.0% |
| !! | ACTTAAAAGAAGTAGAAAAA+AGG | + | chr4.3:33503253-33503272 | None:intergenic | 20.0% |
| !!! | ACAATTCCTTTTGATATAAA+AGG | - | chr4.3:33503429-33503448 | MS.gene50679:intron | 20.0% |
| !!! | CATCATACAAATTCTTATTT+GGG | - | chr4.3:33503821-33503840 | MS.gene50679:intron | 20.0% |
| !!! | CTTGTCTAATATTATTGTTT+TGG | - | chr4.3:33503288-33503307 | MS.gene50679:intron | 20.0% |
| !!! | TAATTCAAGTTTTTTTTCCA+TGG | - | chr4.3:33504133-33504152 | MS.gene50679:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTCT+TGG | + | chr4.3:33504437-33504456 | None:intergenic | 20.0% |
| !!! | TATTGGATACTATAAGTTTT+GGG | + | chr4.3:33503671-33503690 | None:intergenic | 20.0% |
| !!! | TTATTGGATACTATAAGTTT+TGG | + | chr4.3:33503672-33503691 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | - | chr4.3:33503437-33503456 | MS.gene50679:intron | 20.0% |
| ! | AATCTTAATTGGCTAAACAT+AGG | + | chr4.3:33504079-33504098 | None:intergenic | 25.0% |
| ! | ATGGAAGATTGTTATAGATT+GGG | - | chr4.3:33503465-33503484 | MS.gene50679:CDS | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | - | chr4.3:33504489-33504508 | MS.gene50679:CDS | 25.0% |
| ! | GCATCATACAAATTCTTATT+TGG | - | chr4.3:33503820-33503839 | MS.gene50679:intron | 25.0% |
| ! | TATGGAAGATTGTTATAGAT+TGG | - | chr4.3:33503464-33503483 | MS.gene50679:CDS | 25.0% |
| ! | TTGTTTCACATAACAATCTA+AGG | + | chr4.3:33504205-33504224 | None:intergenic | 25.0% |
| !! | ACAAATTCTTATTTGGGTTT+AGG | - | chr4.3:33503827-33503846 | MS.gene50679:intron | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | + | chr4.3:33503438-33503457 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | - | chr4.3:33503436-33503455 | MS.gene50679:intron | 25.0% |
| AAATCTTGAATTGGAGTATG+TGG | - | chr4.3:33503335-33503354 | MS.gene50679:intron | 30.0% | |
| ATAAAATAATCAACTGCACC+TGG | + | chr4.3:33504028-33504047 | None:intergenic | 30.0% | |
| TAAAATAATCAACTGCACCT+GGG | + | chr4.3:33504027-33504046 | None:intergenic | 30.0% | |
| TAACAGTAATCTCAATACAG+TGG | + | chr4.3:33504270-33504289 | None:intergenic | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | - | chr4.3:33503079-33503098 | MS.gene50679:CDS | 30.0% | |
| TGTTCATTACTTCCAAGTTA+TGG | - | chr4.3:33503155-33503174 | MS.gene50679:intron | 30.0% | |
| TTATACAGATAGCACTAAGA+TGG | - | chr4.3:33504322-33504341 | MS.gene50679:CDS | 30.0% | |
| ! | AATATGCCAATGATAGGTTT+TGG | - | chr4.3:33502959-33502978 | MS.gene50679:CDS | 30.0% |
| ! | AATTCTTATTTGGGTTTAGG+TGG | - | chr4.3:33503830-33503849 | MS.gene50679:intron | 30.0% |
| ! | ATGTATTTGTGAAGTATCAC+TGG | + | chr4.3:33503723-33503742 | None:intergenic | 30.0% |
| !! | TATCCTCACCTTTAAAGTTA+TGG | + | chr4.3:33503410-33503429 | None:intergenic | 30.0% |
| AAATTATGCTTGCTTGAGAG+TGG | + | chr4.3:33503224-33503243 | None:intergenic | 35.0% | |
| AATGGCATCAACCAAAATTG+AGG | + | chr4.3:33503023-33503042 | None:intergenic | 35.0% | |
| CAGAGGTGATACTAAATTCA+GGG | - | chr4.3:33502933-33502952 | MS.gene50679:CDS | 35.0% | |
| CTGCATCAGTTACTTCAAAA+TGG | - | chr4.3:33503614-33503633 | MS.gene50679:intron | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | + | chr4.3:33502968-33502987 | None:intergenic | 35.0% | |
| GGGAAAAATATGCCAATGAT+AGG | - | chr4.3:33502953-33502972 | MS.gene50679:CDS | 35.0% | |
| GTTGAAGGCCATAACTTTAA+AGG | - | chr4.3:33503399-33503418 | MS.gene50679:intron | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | - | chr4.3:33504337-33504356 | MS.gene50679:CDS | 35.0% | |
| TCATATACCTGATTAACAGC+AGG | + | chr4.3:33503567-33503586 | None:intergenic | 35.0% | |
| TGACACCAATAGACTTTGAT+AGG | + | chr4.3:33503491-33503510 | None:intergenic | 35.0% | |
| TGGATCTCTATTTGATTCAC+TGG | - | chr4.3:33503355-33503374 | MS.gene50679:intron | 35.0% | |
| TTGTTGAAGCTCTTCACAAT+GGG | + | chr4.3:33504369-33504388 | None:intergenic | 35.0% | |
| ! | ATTAACAGCAGGAGAGATTT+TGG | + | chr4.3:33503556-33503575 | None:intergenic | 35.0% |
| ! | GTTCATCACGATTTTTAACG+AGG | + | chr4.3:33503135-33503154 | None:intergenic | 35.0% |
| ! | TAATGGACCTTACAAGTCAT+TGG | - | chr4.3:33504506-33504525 | MS.gene50679:CDS | 35.0% |
| ! | TTGGTTGATGCCATTGAAAT+AGG | - | chr4.3:33503028-33503047 | MS.gene50679:CDS | 35.0% |
| ! | TTTGGCACTTTCTAAGAGTA+TGG | + | chr4.3:33503538-33503557 | None:intergenic | 35.0% |
| !! | TCTATTGGTGTCAGTAACTT+TGG | - | chr4.3:33503498-33503517 | MS.gene50679:CDS | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | - | chr4.3:33503446-33503465 | MS.gene50679:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | - | chr4.3:33504338-33504357 | MS.gene50679:CDS | 40.0% | |
| AATCTCTCCTGCTGTTAATC+AGG | - | chr4.3:33503557-33503576 | MS.gene50679:CDS | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | - | chr4.3:33503885-33503904 | MS.gene50679:intron | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | + | chr4.3:33503170-33503189 | None:intergenic | 40.0% | |
| AGGTTGAAACAAGACGTTGA+AGG | - | chr4.3:33503384-33503403 | MS.gene50679:intron | 40.0% | |
| ATGCCATTGAAATAGGCTAC+AGG | - | chr4.3:33503035-33503054 | MS.gene50679:CDS | 40.0% | |
| ATGCCTGTAGCCTATTTCAA+TGG | + | chr4.3:33503041-33503060 | None:intergenic | 40.0% | |
| ATTTGATTCACTGGCCAGTA+AGG | - | chr4.3:33503364-33503383 | MS.gene50679:intron | 40.0% | |
| CATCAACCAAAATTGAGGTG+AGG | + | chr4.3:33503018-33503037 | None:intergenic | 40.0% | |
| CATTGTGAAGAGCTTCAACA+AGG | - | chr4.3:33504368-33504387 | MS.gene50679:CDS | 40.0% | |
| CCAGAGGTGATACTAAATTC+AGG | - | chr4.3:33502932-33502951 | MS.gene50679:CDS | 40.0% | |
| CCATGGTCAAACTTTAGACT+TGG | - | chr4.3:33504150-33504169 | MS.gene50679:intron | 40.0% | |
| CCTGAATTTAGTATCACCTC+TGG | + | chr4.3:33502935-33502954 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | - | chr4.3:33504336-33504355 | MS.gene50679:CDS | 40.0% | |
| CTTGTTGAAGCTCTTCACAA+TGG | + | chr4.3:33504370-33504389 | None:intergenic | 40.0% | |
| GGAAACAAACAAAGTTCCAG+AGG | - | chr4.3:33502916-33502935 | MS.gene50679:CDS | 40.0% | |
| TTGGGCCTATCAAAGTCTAT+TGG | - | chr4.3:33503483-33503502 | MS.gene50679:CDS | 40.0% | |
| ! | AGCTCTTCCAATGACTTGTA+AGG | + | chr4.3:33504516-33504535 | None:intergenic | 40.0% |
| ! | AGGAGGGTACAAACTAAGTT+GGG | - | chr4.3:33503935-33503954 | MS.gene50679:CDS | 40.0% |
| ! | AGGCCATAACTTTAAAGGTG+AGG | - | chr4.3:33503404-33503423 | MS.gene50679:intron | 40.0% |
| ! | CCAAGTCTAAAGTTTGACCA+TGG | + | chr4.3:33504153-33504172 | None:intergenic | 40.0% |
| ! | CTAAAGCTTTTGACACAGCT+TGG | + | chr4.3:33503105-33503124 | None:intergenic | 40.0% |
| ! | TAGAAAGAAGAGTATAGCCC+AGG | - | chr4.3:33504007-33504026 | MS.gene50679:CDS | 40.0% |
| ! | TAGGAGGGTACAAACTAAGT+TGG | - | chr4.3:33503934-33503953 | MS.gene50679:CDS | 40.0% |
| ! | TGAAGTCCTCACCTCAATTT+TGG | - | chr4.3:33503009-33503028 | MS.gene50679:CDS | 40.0% |
| !! | ACGTCTTGTTTCAACCTTAC+TGG | + | chr4.3:33503381-33503400 | None:intergenic | 40.0% |
| !! | GTGTCAAAAGCTTTAGAGCT+AGG | - | chr4.3:33503109-33503128 | MS.gene50679:CDS | 40.0% |
| !! | TGCGTGCTTAGTTGGTAAAA+AGG | + | chr4.3:33503754-33503773 | None:intergenic | 40.0% |
| AAGGAATCCATGTGAGTGCA+TGG | - | chr4.3:33503904-33503923 | MS.gene50679:CDS | 45.0% | |
| AATGAACCCATCATGGCATC+AGG | - | chr4.3:33503854-33503873 | MS.gene50679:intron | 45.0% | |
| ACAAGTCATTGGAAGAGCTG+TGG | - | chr4.3:33504517-33504536 | MS.gene50679:CDS | 45.0% | |
| AGGTGGAAATGAACCCATCA+TGG | - | chr4.3:33503847-33503866 | MS.gene50679:intron | 45.0% | |
| ATCGAATTCTCCATCACTGC+AGG | + | chr4.3:33503966-33503985 | None:intergenic | 45.0% | |
| ATGAACCCATCATGGCATCA+GGG | - | chr4.3:33503855-33503874 | MS.gene50679:intron | 45.0% | |
| ATGACAACTGCGTGCTTAGT+TGG | + | chr4.3:33503762-33503781 | None:intergenic | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | + | chr4.3:33503007-33503026 | None:intergenic | 45.0% | |
| CAAGTCATTGGAAGAGCTGT+GGG | - | chr4.3:33504518-33504537 | MS.gene50679:CDS | 45.0% | |
| GATTCTGCGCAAAATTGCTG+AGG | - | chr4.3:33503983-33504002 | MS.gene50679:CDS | 45.0% | |
| TCCTCAATGCAGACTGCTAA+AGG | - | chr4.3:33504464-33504483 | MS.gene50679:CDS | 45.0% | |
| TGAAGAGCTTCAACAAGGAG+AGG | - | chr4.3:33504373-33504392 | MS.gene50679:CDS | 45.0% | |
| ! | GGAGGGTACAAACTAAGTTG+GGG | - | chr4.3:33503936-33503955 | MS.gene50679:CDS | 45.0% |
| !! | CTTAGTTTGTACCCTCCTAG+TGG | + | chr4.3:33503933-33503952 | None:intergenic | 45.0% |
| !! | TTTTGAGAGCTGGGAGAACA+AGG | + | chr4.3:33503201-33503220 | None:intergenic | 45.0% |
| !!! | TGAGAGTGGTTTTGAGAGCT+GGG | + | chr4.3:33503210-33503229 | None:intergenic | 45.0% |
| !!! | TTGAGAGTGGTTTTGAGAGC+TGG | + | chr4.3:33503211-33503230 | None:intergenic | 45.0% |
| !! | AAAGAATTAAAATAAATTAT+TGG | + | chr4.3:33503688-33503707 | None:intergenic | 5.0% |
| !!! | ATAATTTATTTTAATTCTTT+TGG | - | chr4.3:33503688-33503707 | MS.gene50679:intron | 5.0% |
| AGTTTCCCCTGATGCCATGA+TGG | + | chr4.3:33503864-33503883 | None:intergenic | 50.0% | |
| GCCTTTAGCAGTCTGCATTG+AGG | + | chr4.3:33504468-33504487 | None:intergenic | 50.0% | |
| GTTTCCCCTGATGCCATGAT+GGG | + | chr4.3:33503863-33503882 | None:intergenic | 50.0% | |
| TCATTGGAAGAGCTGTGGGA+TGG | - | chr4.3:33504522-33504541 | MS.gene50679:CDS | 50.0% | |
| TGAACCCATCATGGCATCAG+GGG | - | chr4.3:33503856-33503875 | MS.gene50679:intron | 50.0% | |
| TTTGACACAGCTTGGCCTAG+AGG | + | chr4.3:33503097-33503116 | None:intergenic | 50.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | + | chr4.3:33502998-33503017 | None:intergenic | 50.0% |
| AGTGCATGGTCACCACTAGG+AGG | - | chr4.3:33503918-33503937 | MS.gene50679:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | + | chr4.3:33504353-33504372 | None:intergenic | 55.0% | |
| GAGGTGAGGACTTCATGTGG+TGG | + | chr4.3:33503004-33503023 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | - | chr4.3:33503915-33503934 | MS.gene50679:CDS | 55.0% | |
| GTGCATGGTCACCACTAGGA+GGG | - | chr4.3:33503919-33503938 | MS.gene50679:CDS | 55.0% | |
| GTGGTGACCATGCACTCACA+TGG | + | chr4.3:33503914-33503933 | None:intergenic | 55.0% | |
| ! | GAGGACTTCATGTGGTGGAG+AGG | + | chr4.3:33502999-33503018 | None:intergenic | 55.0% |
| TTGGGGTTCGCCTGCAGTGA+TGG | - | chr4.3:33503953-33503972 | MS.gene50679:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 33502914 | 33504554 | 33502914 | ID=MS.gene50679 |
| chr4.3 | mRNA | 33502914 | 33504554 | 33502914 | ID=MS.gene50679.t1;Parent=MS.gene50679 |
| chr4.3 | exon | 33504298 | 33504554 | 33504298 | ID=MS.gene50679.t1.exon1;Parent=MS.gene50679.t1 |
| chr4.3 | CDS | 33504298 | 33504554 | 33504298 | ID=cds.MS.gene50679.t1;Parent=MS.gene50679.t1 |
| chr4.3 | exon | 33503890 | 33504133 | 33503890 | ID=MS.gene50679.t1.exon2;Parent=MS.gene50679.t1 |
| chr4.3 | CDS | 33503890 | 33504133 | 33503890 | ID=cds.MS.gene50679.t1;Parent=MS.gene50679.t1 |
| chr4.3 | exon | 33503440 | 33503619 | 33503440 | ID=MS.gene50679.t1.exon3;Parent=MS.gene50679.t1 |
| chr4.3 | CDS | 33503440 | 33503619 | 33503440 | ID=cds.MS.gene50679.t1;Parent=MS.gene50679.t1 |
| chr4.3 | exon | 33502914 | 33503138 | 33502914 | ID=MS.gene50679.t1.exon4;Parent=MS.gene50679.t1 |
| chr4.3 | CDS | 33502914 | 33503138 | 33502914 | ID=cds.MS.gene50679.t1;Parent=MS.gene50679.t1 |
| Gene Sequence |
| Protein sequence |
