Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50730.t1 | XP_003607012.1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 2.40E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50730.t1 | Q0IGM7 | 52.0 | 200 | 72 | 3 | 1 | 176 | 1 | 200 | 2.0e-45 | 184.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50730.t1 | G7JIM6 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 1.7e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene50730.t1 | TF | DBB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055616 | MS.gene50730 | 0.801644 | 8.17E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50730.t1 | MTR_4g071200 | 96.413 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 3.50e-161 | 446 |
| MS.gene50730.t1 | MTR_3g117320 | 60.094 | 213 | 68 | 7 | 1 | 198 | 1 | 211 | 5.49e-77 | 233 |
| MS.gene50730.t1 | MTR_1g023260 | 45.815 | 227 | 89 | 4 | 1 | 208 | 1 | 212 | 3.66e-57 | 184 |
| MS.gene50730.t1 | MTR_1g023260 | 49.223 | 193 | 71 | 2 | 1 | 181 | 1 | 178 | 4.93e-56 | 178 |
| MS.gene50730.t1 | MTR_3g113070 | 47.191 | 178 | 58 | 3 | 1 | 177 | 1 | 143 | 2.53e-51 | 167 |
| MS.gene50730.t1 | MTR_2g073370 | 50.794 | 126 | 58 | 3 | 1 | 126 | 1 | 122 | 5.86e-36 | 129 |
| MS.gene50730.t1 | MTR_4g067320 | 50.000 | 110 | 54 | 1 | 1 | 110 | 1 | 109 | 1.56e-34 | 124 |
| MS.gene50730.t1 | MTR_4g067320 | 50.000 | 110 | 54 | 1 | 1 | 110 | 1 | 109 | 1.78e-34 | 124 |
| MS.gene50730.t1 | MTR_2g099010 | 48.182 | 110 | 56 | 1 | 1 | 110 | 1 | 109 | 8.90e-32 | 117 |
| MS.gene50730.t1 | MTR_2g099010 | 48.182 | 110 | 56 | 1 | 1 | 110 | 1 | 109 | 1.02e-31 | 117 |
| MS.gene50730.t1 | MTR_5g021580 | 37.324 | 142 | 78 | 4 | 1 | 135 | 1 | 138 | 8.54e-23 | 92.4 |
| MS.gene50730.t1 | MTR_5g021580 | 37.324 | 142 | 78 | 4 | 1 | 135 | 1 | 138 | 9.21e-23 | 92.4 |
| MS.gene50730.t1 | MTR_1g023260 | 37.423 | 163 | 68 | 4 | 65 | 208 | 57 | 204 | 7.05e-21 | 89.4 |
| MS.gene50730.t1 | MTR_1g013450 | 43.299 | 97 | 45 | 1 | 5 | 101 | 6 | 92 | 8.83e-20 | 87.0 |
| MS.gene50730.t1 | MTR_3g105710 | 39.175 | 97 | 49 | 1 | 5 | 101 | 6 | 92 | 1.22e-16 | 78.2 |
| MS.gene50730.t1 | MTR_4g128930 | 40.860 | 93 | 45 | 1 | 5 | 97 | 22 | 104 | 2.36e-16 | 78.2 |
| MS.gene50730.t1 | MTR_7g018170 | 35.043 | 117 | 63 | 2 | 5 | 121 | 26 | 129 | 3.08e-15 | 75.1 |
| MS.gene50730.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 6.69e-14 | 71.2 |
| MS.gene50730.t1 | MTR_5g069480 | 36.082 | 97 | 52 | 1 | 1 | 97 | 1 | 87 | 7.45e-14 | 70.1 |
| MS.gene50730.t1 | MTR_3g082630 | 35.052 | 97 | 52 | 2 | 1 | 97 | 1 | 86 | 2.36e-11 | 63.5 |
| MS.gene50730.t1 | MTR_7g108150 | 32.653 | 98 | 55 | 2 | 5 | 102 | 20 | 106 | 9.02e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50730.t1 | AT4G39070 | 53.500 | 200 | 69 | 4 | 1 | 176 | 1 | 200 | 2.10e-58 | 186 |
| MS.gene50730.t1 | AT1G75540 | 45.411 | 207 | 92 | 4 | 1 | 187 | 1 | 206 | 5.54e-54 | 177 |
| MS.gene50730.t1 | AT1G06040 | 46.715 | 137 | 66 | 2 | 1 | 137 | 1 | 130 | 8.32e-37 | 128 |
| MS.gene50730.t1 | AT1G78600 | 51.724 | 116 | 55 | 1 | 1 | 116 | 1 | 115 | 2.26e-36 | 131 |
| MS.gene50730.t1 | AT1G78600 | 51.724 | 116 | 55 | 1 | 1 | 116 | 1 | 115 | 3.46e-36 | 131 |
| MS.gene50730.t1 | AT1G06040 | 46.715 | 137 | 66 | 2 | 1 | 137 | 1 | 130 | 9.22e-36 | 128 |
| MS.gene50730.t1 | AT2G31380 | 51.327 | 113 | 54 | 1 | 1 | 113 | 1 | 112 | 1.41e-33 | 122 |
| MS.gene50730.t1 | AT4G10240 | 44.138 | 145 | 67 | 4 | 1 | 135 | 1 | 141 | 1.30e-30 | 112 |
| MS.gene50730.t1 | AT4G38960 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 2.20e-23 | 94.0 |
| MS.gene50730.t1 | AT4G38960 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 2.20e-23 | 94.0 |
| MS.gene50730.t1 | AT2G21320 | 43.810 | 105 | 55 | 2 | 1 | 105 | 1 | 101 | 4.90e-22 | 90.1 |
| MS.gene50730.t1 | AT2G24790 | 41.237 | 97 | 47 | 1 | 5 | 101 | 8 | 94 | 4.26e-19 | 83.6 |
| MS.gene50730.t1 | AT2G24790 | 41.237 | 97 | 47 | 1 | 5 | 101 | 8 | 94 | 1.24e-18 | 83.6 |
| MS.gene50730.t1 | AT5G24930 | 37.113 | 97 | 51 | 1 | 5 | 101 | 6 | 92 | 2.62e-16 | 77.8 |
| MS.gene50730.t1 | AT5G15850 | 32.520 | 123 | 70 | 2 | 5 | 127 | 12 | 121 | 9.18e-16 | 76.3 |
| MS.gene50730.t1 | AT4G38960 | 31.081 | 148 | 55 | 3 | 1 | 105 | 1 | 144 | 2.02e-15 | 73.6 |
| MS.gene50730.t1 | AT5G15840 | 33.333 | 123 | 70 | 2 | 5 | 127 | 20 | 130 | 7.11e-15 | 72.8 |
| MS.gene50730.t1 | AT5G15840 | 33.333 | 123 | 70 | 2 | 5 | 127 | 20 | 130 | 9.05e-15 | 73.6 |
| MS.gene50730.t1 | AT3G02380 | 36.559 | 93 | 49 | 1 | 5 | 97 | 16 | 98 | 1.35e-14 | 72.8 |
| MS.gene50730.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 1.97e-12 | 65.5 |
| MS.gene50730.t1 | AT1G28050 | 35.644 | 101 | 55 | 1 | 2 | 102 | 6 | 96 | 2.18e-12 | 66.6 |
| MS.gene50730.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 2.97e-12 | 65.9 |
| MS.gene50730.t1 | AT2G47890 | 40.244 | 82 | 39 | 1 | 5 | 86 | 13 | 84 | 4.70e-12 | 65.5 |
| MS.gene50730.t1 | AT5G48250 | 34.694 | 98 | 53 | 2 | 1 | 97 | 1 | 88 | 5.46e-12 | 65.5 |
| MS.gene50730.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 8.30e-12 | 65.1 |
| MS.gene50730.t1 | AT2G33500 | 34.000 | 100 | 56 | 1 | 3 | 102 | 10 | 99 | 8.72e-12 | 65.1 |
| MS.gene50730.t1 | AT5G57660 | 34.646 | 127 | 60 | 4 | 5 | 122 | 22 | 134 | 1.38e-11 | 64.3 |
| MS.gene50730.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.93e-11 | 62.4 |
| MS.gene50730.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.93e-11 | 62.4 |
| MS.gene50730.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.93e-11 | 62.4 |
| MS.gene50730.t1 | AT3G07650 | 36.047 | 86 | 45 | 1 | 1 | 86 | 1 | 76 | 5.93e-11 | 62.4 |
Find 60 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTACAGAAGACGTTATT+AGG | 0.294008 | 4.3:+34100767 | None:intergenic |
| AATTGTTTCAATCAAGTATT+CGG | 0.312961 | 4.3:+34100832 | None:intergenic |
| ATCACAGAGAGGGGTGTCTT+TGG | 0.337373 | 4.3:+34101396 | None:intergenic |
| CTTGAAAATGAACTTGGTCT+TGG | 0.353565 | 4.3:+34100929 | None:intergenic |
| CCCCGTCTAAAGAAGCAATC+TGG | 0.356882 | 4.3:+34100516 | None:intergenic |
| CTGAGCCATTGGAAGTTGTT+GGG | 0.365142 | 4.3:+34100969 | None:intergenic |
| TGGTAAGTTTGTTGACTTCA+TGG | 0.370579 | 4.3:+34101053 | None:intergenic |
| TCTGAGCCATTGGAAGTTGT+TGG | 0.394596 | 4.3:+34100968 | None:intergenic |
| CCCAGATTGCTTCTTTAGAC+GGG | 0.396501 | 4.3:-34100517 | MS.gene50730:CDS |
| TACTTGATTGAAACAATTCC+TGG | 0.400109 | 4.3:-34100827 | MS.gene50730:CDS |
| AAGACAGAGCAATACTTTGC+AGG | 0.405273 | 4.3:-34101093 | MS.gene50730:CDS |
| CAGAGAGCTGCTTCATCTGC+AGG | 0.413650 | 4.3:+34101499 | None:intergenic |
| TGTTTATAACTTGAACATCT+TGG | 0.419919 | 4.3:+34100603 | None:intergenic |
| CCCCAGATTGCTTCTTTAGA+CGG | 0.429154 | 4.3:-34100518 | MS.gene50730:CDS |
| GTTCTCAAAGTTCTTTCAAA+GGG | 0.440989 | 4.3:-34100892 | MS.gene50730:CDS |
| GCGTAAAAGAAGCATCAAAA+AGG | 0.446259 | 4.3:+34100789 | None:intergenic |
| AACTTACCAAGCAACACAAC+AGG | 0.456566 | 4.3:-34101039 | MS.gene50730:CDS |
| CAACACACTAAAGCTGTTGA+AGG | 0.461687 | 4.3:-34100482 | MS.gene50730:CDS |
| TGAACTTGGTCTTGGACTTG+AGG | 0.462812 | 4.3:+34100937 | None:intergenic |
| AAGTTATAAACATGTCTGAC+TGG | 0.466099 | 4.3:-34100592 | MS.gene50730:CDS |
| GTGTTTAGCAGAGACCTTGT+TGG | 0.467471 | 4.3:+34101447 | None:intergenic |
| CAGAGACCTTGTTGGCATAG+TGG | 0.468511 | 4.3:+34101455 | None:intergenic |
| GCCTAATAACGTCTTCTGTA+AGG | 0.477486 | 4.3:-34100768 | MS.gene50730:intron |
| CCCGTCTAAAGAAGCAATCT+GGG | 0.479125 | 4.3:+34100517 | None:intergenic |
| CAAGTATTCGGAAATGCTAC+TGG | 0.481122 | 4.3:+34100844 | None:intergenic |
| CCTCTACATTGTTTGATGAA+TGG | 0.482437 | 4.3:+34100434 | None:intergenic |
| GGTTCTTAGTTCTGAGCCAT+TGG | 0.490954 | 4.3:+34100958 | None:intergenic |
| AGAGGGGTGTCTTTGGAAGT+GGG | 0.493908 | 4.3:+34101403 | None:intergenic |
| GAGAGGGGTGTCTTTGGAAG+TGG | 0.504462 | 4.3:+34101402 | None:intergenic |
| TGTTCTCAAAGTTCTTTCAA+AGG | 0.505912 | 4.3:-34100893 | MS.gene50730:CDS |
| ATGAATGGAGGACTAGTTGA+AGG | 0.506506 | 4.3:+34100449 | None:intergenic |
| AAGTTCTTTCAAAGGGAACA+TGG | 0.523905 | 4.3:-34100885 | MS.gene50730:CDS |
| AAGAAACCTGTTGTGTTGCT+TGG | 0.533532 | 4.3:+34101033 | None:intergenic |
| CACAACAGGTTTCTTCTCAC+AGG | 0.544493 | 4.3:-34101025 | MS.gene50730:CDS |
| AACAATTCCTGGTTACTGCA+TGG | 0.545989 | 4.3:-34100816 | MS.gene50730:CDS |
| TTCATCTGCAGGGCAGAACA+AGG | 0.547884 | 4.3:+34101510 | None:intergenic |
| CTTCTCACAGGTGTAAAGAT+CGG | 0.556317 | 4.3:-34101013 | MS.gene50730:CDS |
| AGACAGAGCAATACTTTGCA+GGG | 0.562722 | 4.3:-34101092 | MS.gene50730:CDS |
| TCAAACCCAACAACTTCCAA+TGG | 0.565279 | 4.3:-34100974 | MS.gene50730:CDS |
| AGGTCTTCCATGCAGTAACC+AGG | 0.571610 | 4.3:+34100809 | None:intergenic |
| AGTTTGTTGACTTCATGGAT+AGG | 0.572223 | 4.3:+34101058 | None:intergenic |
| CTACATTGTTTGATGAATGG+AGG | 0.578479 | 4.3:+34100437 | None:intergenic |
| GAGGGGTGTCTTTGGAAGTG+GGG | 0.580604 | 4.3:+34101404 | None:intergenic |
| GGGTGTCTTTGGAAGTGGGG+TGG | 0.581849 | 4.3:+34101407 | None:intergenic |
| CCAGATTGCTTCTTTAGACG+GGG | 0.585647 | 4.3:-34100516 | MS.gene50730:CDS |
| AGAGAGCTGCTTCATCTGCA+GGG | 0.589609 | 4.3:+34101500 | None:intergenic |
| TCGAATTAGCACTAAGCTGA+GGG | 0.591073 | 4.3:+34100546 | None:intergenic |
| GGGAATCTAACTTGAGATTG+TGG | 0.592001 | 4.3:+34100566 | None:intergenic |
| CAATATCCACTATGCCAACA+AGG | 0.603596 | 4.3:-34101461 | MS.gene50730:CDS |
| TTCGAATTAGCACTAAGCTG+AGG | 0.605701 | 4.3:+34100545 | None:intergenic |
| CCTTGCAGATATCACAGAGA+GGG | 0.606602 | 4.3:+34101386 | None:intergenic |
| CCCTCTCTGTGATATCTGCA+AGG | 0.608181 | 4.3:-34101386 | MS.gene50730:intron |
| GTTTGTGACATGCATCACAC+TGG | 0.618408 | 4.3:+34101542 | None:intergenic |
| TGATGCATGTCACAAACAAG+AGG | 0.622158 | 4.3:-34101536 | MS.gene50730:CDS |
| AGTTATAAACATGTCTGACT+GGG | 0.637692 | 4.3:-34100591 | MS.gene50730:CDS |
| CCATTCATCAAACAATGTAG+AGG | 0.654007 | 4.3:-34100434 | MS.gene50730:CDS |
| ATCTGCAGGGCAGAACAAGG+AGG | 0.684576 | 4.3:+34101513 | None:intergenic |
| CTTGCAGATATCACAGAGAG+GGG | 0.687405 | 4.3:+34101387 | None:intergenic |
| CCGTCTAAAGAAGCAATCTG+GGG | 0.713354 | 4.3:+34100518 | None:intergenic |
| ACCTTGCAGATATCACAGAG+AGG | 0.718667 | 4.3:+34101385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTTGTTTATCAAAAAAAT+AGG | - | chr4.3:34100783-34100802 | MS.gene50730:CDS | 15.0% |
| !! | AATTGTTTCAATCAAGTATT+CGG | + | chr4.3:34101145-34101164 | None:intergenic | 20.0% |
| !! | CTCAATCAATTAAAATAAGT+TGG | - | chr4.3:34101307-34101326 | MS.gene50730:intron | 20.0% |
| !!! | AATAAGTTGGATATGTTTTT+TGG | - | chr4.3:34101320-34101339 | MS.gene50730:intron | 20.0% |
| ! | GTAGATTAAAAATAGCTAGT+AGG | + | chr4.3:34101288-34101307 | None:intergenic | 25.0% |
| ! | TGTTTATAACTTGAACATCT+TGG | + | chr4.3:34101374-34101393 | None:intergenic | 25.0% |
| !! | TTTTCACTTGAAAATGAACT+TGG | + | chr4.3:34101054-34101073 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTGGTATTGTTTC+AGG | - | chr4.3:34101332-34101351 | MS.gene50730:intron | 25.0% |
| AAGTACGTAAGAAATAGAGA+AGG | + | chr4.3:34100620-34100639 | None:intergenic | 30.0% | |
| AAGTTATAAACATGTCTGAC+TGG | - | chr4.3:34101382-34101401 | MS.gene50730:intron | 30.0% | |
| AGTTATAAACATGTCTGACT+GGG | - | chr4.3:34101383-34101402 | MS.gene50730:intron | 30.0% | |
| CCAAAAATATGGTATATTGC+AGG | - | chr4.3:34100831-34100850 | MS.gene50730:CDS | 30.0% | |
| CGCTGAAAATCAGTTAAATA+AGG | + | chr4.3:34100735-34100754 | None:intergenic | 30.0% | |
| GTTCTCAAAGTTCTTTCAAA+GGG | - | chr4.3:34101082-34101101 | MS.gene50730:CDS | 30.0% | |
| TACTTGATTGAAACAATTCC+TGG | - | chr4.3:34101147-34101166 | MS.gene50730:intron | 30.0% | |
| TGTTCTCAAAGTTCTTTCAA+AGG | - | chr4.3:34101081-34101100 | MS.gene50730:CDS | 30.0% | |
| ! | CCTGCAATATACCATATTTT+TGG | + | chr4.3:34100834-34100853 | None:intergenic | 30.0% |
| ! | TTCTTACGTACTTTTCAACA+GGG | - | chr4.3:34100627-34100646 | MS.gene50730:intron | 30.0% |
| ! | TTTCTTACGTACTTTTCAAC+AGG | - | chr4.3:34100626-34100645 | MS.gene50730:intron | 30.0% |
| !!! | ACCATATTTTTGGATCGTAT+AGG | + | chr4.3:34100824-34100843 | None:intergenic | 30.0% |
| AACGTCTTCTGTAAGGTAAT+TGG | - | chr4.3:34101213-34101232 | MS.gene50730:intron | 35.0% | |
| AAGTTCTTTCAAAGGGAACA+TGG | - | chr4.3:34101089-34101108 | MS.gene50730:CDS | 35.0% | |
| AATATGGTATATTGCAGGAG+AGG | - | chr4.3:34100836-34100855 | MS.gene50730:CDS | 35.0% | |
| ACCTTACAGAAGACGTTATT+AGG | + | chr4.3:34101210-34101229 | None:intergenic | 35.0% | |
| CCATTCATCAAACAATGTAG+AGG | - | chr4.3:34101540-34101559 | MS.gene50730:CDS | 35.0% | |
| CCTCTACATTGTTTGATGAA+TGG | + | chr4.3:34101543-34101562 | None:intergenic | 35.0% | |
| CTACATTGTTTGATGAATGG+AGG | + | chr4.3:34101540-34101559 | None:intergenic | 35.0% | |
| CTTGAAAATGAACTTGGTCT+TGG | + | chr4.3:34101048-34101067 | None:intergenic | 35.0% | |
| GCCTATACGATCCAAAAATA+TGG | - | chr4.3:34100820-34100839 | MS.gene50730:CDS | 35.0% | |
| !! | AGTTTGTTGACTTCATGGAT+AGG | + | chr4.3:34100919-34100938 | None:intergenic | 35.0% |
| !! | GCGTAAAAGAAGCATCAAAA+AGG | + | chr4.3:34101188-34101207 | None:intergenic | 35.0% |
| !! | TGGTAAGTTTGTTGACTTCA+TGG | + | chr4.3:34100924-34100943 | None:intergenic | 35.0% |
| AACAATTCCTGGTTACTGCA+TGG | - | chr4.3:34101158-34101177 | MS.gene50730:intron | 40.0% | |
| AACTTACCAAGCAACACAAC+AGG | - | chr4.3:34100935-34100954 | MS.gene50730:CDS | 40.0% | |
| AAGACAGAGCAATACTTTGC+AGG | - | chr4.3:34100881-34100900 | MS.gene50730:CDS | 40.0% | |
| AGACAGAGCAATACTTTGCA+GGG | - | chr4.3:34100882-34100901 | MS.gene50730:CDS | 40.0% | |
| CAACACACTAAAGCTGTTGA+AGG | - | chr4.3:34101492-34101511 | MS.gene50730:CDS | 40.0% | |
| CAAGTATTCGGAAATGCTAC+TGG | + | chr4.3:34101133-34101152 | None:intergenic | 40.0% | |
| CAATATCCACTATGCCAACA+AGG | - | chr4.3:34100513-34100532 | MS.gene50730:CDS | 40.0% | |
| CTTCTCACAGGTGTAAAGAT+CGG | - | chr4.3:34100961-34100980 | MS.gene50730:CDS | 40.0% | |
| GCCTAATAACGTCTTCTGTA+AGG | - | chr4.3:34101206-34101225 | MS.gene50730:intron | 40.0% | |
| GGGAATCTAACTTGAGATTG+TGG | + | chr4.3:34101411-34101430 | None:intergenic | 40.0% | |
| TCAAACCCAACAACTTCCAA+TGG | - | chr4.3:34101000-34101019 | MS.gene50730:CDS | 40.0% | |
| TCGAATTAGCACTAAGCTGA+GGG | + | chr4.3:34101431-34101450 | None:intergenic | 40.0% | |
| TGATGCATGTCACAAACAAG+AGG | - | chr4.3:34100438-34100457 | MS.gene50730:CDS | 40.0% | |
| TTCGAATTAGCACTAAGCTG+AGG | + | chr4.3:34101432-34101451 | None:intergenic | 40.0% | |
| ! | AAGAAACCTGTTGTGTTGCT+TGG | + | chr4.3:34100944-34100963 | None:intergenic | 40.0% |
| !! | ATGAATGGAGGACTAGTTGA+AGG | + | chr4.3:34101528-34101547 | None:intergenic | 40.0% |
| ACCTTGCAGATATCACAGAG+AGG | + | chr4.3:34100592-34100611 | None:intergenic | 45.0% | |
| CACAACAGGTTTCTTCTCAC+AGG | - | chr4.3:34100949-34100968 | MS.gene50730:CDS | 45.0% | |
| CCAGATTGCTTCTTTAGACG+GGG | - | chr4.3:34101458-34101477 | MS.gene50730:CDS | 45.0% | |
| CCCAGATTGCTTCTTTAGAC+GGG | - | chr4.3:34101457-34101476 | MS.gene50730:CDS | 45.0% | |
| CCCCAGATTGCTTCTTTAGA+CGG | - | chr4.3:34101456-34101475 | MS.gene50730:CDS | 45.0% | |
| CCCGTCTAAAGAAGCAATCT+GGG | + | chr4.3:34101460-34101479 | None:intergenic | 45.0% | |
| CCGTCTAAAGAAGCAATCTG+GGG | + | chr4.3:34101459-34101478 | None:intergenic | 45.0% | |
| CCTTGCAGATATCACAGAGA+GGG | + | chr4.3:34100591-34100610 | None:intergenic | 45.0% | |
| CTGAGCCATTGGAAGTTGTT+GGG | + | chr4.3:34101008-34101027 | None:intergenic | 45.0% | |
| CTTGCAGATATCACAGAGAG+GGG | + | chr4.3:34100590-34100609 | None:intergenic | 45.0% | |
| GTGTTTAGCAGAGACCTTGT+TGG | + | chr4.3:34100530-34100549 | None:intergenic | 45.0% | |
| GTTTGTGACATGCATCACAC+TGG | + | chr4.3:34100435-34100454 | None:intergenic | 45.0% | |
| TCTGAGCCATTGGAAGTTGT+TGG | + | chr4.3:34101009-34101028 | None:intergenic | 45.0% | |
| !! | GGTTCTTAGTTCTGAGCCAT+TGG | + | chr4.3:34101019-34101038 | None:intergenic | 45.0% |
| !! | TGAACTTGGTCTTGGACTTG+AGG | + | chr4.3:34101040-34101059 | None:intergenic | 45.0% |
| AGAGAGCTGCTTCATCTGCA+GGG | + | chr4.3:34100477-34100496 | None:intergenic | 50.0% | |
| AGGTCTTCCATGCAGTAACC+AGG | + | chr4.3:34101168-34101187 | None:intergenic | 50.0% | |
| CAGAGACCTTGTTGGCATAG+TGG | + | chr4.3:34100522-34100541 | None:intergenic | 50.0% | |
| CCCCGTCTAAAGAAGCAATC+TGG | + | chr4.3:34101461-34101480 | None:intergenic | 50.0% | |
| CCCTCTCTGTGATATCTGCA+AGG | - | chr4.3:34100588-34100607 | MS.gene50730:CDS | 50.0% | |
| TTCATCTGCAGGGCAGAACA+AGG | + | chr4.3:34100467-34100486 | None:intergenic | 50.0% | |
| !! | AGAGGGGTGTCTTTGGAAGT+GGG | + | chr4.3:34100574-34100593 | None:intergenic | 50.0% |
| !! | ATCACAGAGAGGGGTGTCTT+TGG | + | chr4.3:34100581-34100600 | None:intergenic | 50.0% |
| ATCTGCAGGGCAGAACAAGG+AGG | + | chr4.3:34100464-34100483 | None:intergenic | 55.0% | |
| CAGAGAGCTGCTTCATCTGC+AGG | + | chr4.3:34100478-34100497 | None:intergenic | 55.0% | |
| CTGCAACACAACCGCAGTAG+AGG | - | chr4.3:34100700-34100719 | MS.gene50730:intron | 55.0% | |
| GGCTGATACTGCCTCTACTG+CGG | + | chr4.3:34100714-34100733 | None:intergenic | 55.0% | |
| !! | GAGAGGGGTGTCTTTGGAAG+TGG | + | chr4.3:34100575-34100594 | None:intergenic | 55.0% |
| !! | GAGGGGTGTCTTTGGAAGTG+GGG | + | chr4.3:34100573-34100592 | None:intergenic | 55.0% |
| ! | GGGTGTCTTTGGAAGTGGGG+TGG | + | chr4.3:34100570-34100589 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34100424 | 34101572 | 34100424 | ID=MS.gene50730 |
| chr4.3 | mRNA | 34100424 | 34101572 | 34100424 | ID=MS.gene50730.t1;Parent=MS.gene50730 |
| chr4.3 | exon | 34101387 | 34101572 | 34101387 | ID=MS.gene50730.t1.exon1;Parent=MS.gene50730.t1 |
| chr4.3 | CDS | 34101387 | 34101572 | 34101387 | ID=cds.MS.gene50730.t1;Parent=MS.gene50730.t1 |
| chr4.3 | exon | 34100769 | 34101143 | 34100769 | ID=MS.gene50730.t1.exon2;Parent=MS.gene50730.t1 |
| chr4.3 | CDS | 34100769 | 34101143 | 34100769 | ID=cds.MS.gene50730.t1;Parent=MS.gene50730.t1 |
| chr4.3 | exon | 34100424 | 34100642 | 34100424 | ID=MS.gene50730.t1.exon3;Parent=MS.gene50730.t1 |
| chr4.3 | CDS | 34100424 | 34100642 | 34100424 | ID=cds.MS.gene50730.t1;Parent=MS.gene50730.t1 |
| Gene Sequence |
| Protein sequence |
