AlfalfaGEDB | MS.gene055616

M. sativa cultivar XinJiangDaYe / MS.gene055616

KEGG: K09338
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055616.t1	XP_013467691.1	84.8	204	3	4	1	176	1	204	8.80E-81	309.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055616.t1	P46665	41.9	241	74	5	1	176	1	240	6.0e-30	132.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055616.t1	A0A072VJV2	84.8	204	3	4	1	176	1	204	6.3e-81	309.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene055616.t1	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene053108	MS.gene055616	0.804041	2.61E-49	-1.69E-46
MS.gene054851	MS.gene055616	0.808553	2.93E-50	-1.69E-46
MS.gene055616	MS.gene055617	0.847283	1.28E-59	-1.69E-46
MS.gene055616	MS.gene055618	0.833416	5.40E-56	-1.69E-46
MS.gene055616	MS.gene056694	0.800645	1.31E-48	-1.69E-46
MS.gene055616	MS.gene05960	0.819115	1.38E-52	-1.69E-46
MS.gene055616	MS.gene061044	0.805135	1.54E-49	-1.69E-46
MS.gene055616	MS.gene062638	0.801257	9.81E-49	-1.69E-46
MS.gene055616	MS.gene063062	0.80418	2.44E-49	-1.69E-46
MS.gene055616	MS.gene063063	0.802363	5.81E-49	-1.69E-46
MS.gene055616	MS.gene063698	0.817822	2.70E-52	-1.69E-46
MS.gene055616	MS.gene065675	-0.816036	6.80E-52	-1.69E-46
MS.gene055616	MS.gene066309	0.82215	2.76E-53	-1.69E-46
MS.gene055616	MS.gene066359	0.807995	3.85E-50	-1.69E-46
MS.gene055616	MS.gene066534	0.823225	1.55E-53	-1.69E-46
MS.gene055616	MS.gene067376	0.842963	1.88E-58	-1.69E-46
MS.gene055616	MS.gene068585	0.829057	6.37E-55	-1.69E-46
MS.gene055616	MS.gene069120	0.86098	1.41E-63	-1.69E-46
MS.gene055616	MS.gene069855	-0.800085	1.70E-48	-1.69E-46
MS.gene055616	MS.gene071422	0.806382	8.45E-50	-1.69E-46
MS.gene055616	MS.gene073059	0.805256	1.46E-49	-1.69E-46
MS.gene055616	MS.gene073062	0.802067	6.69E-49	-1.69E-46
MS.gene055616	MS.gene074420	0.810233	1.28E-50	-1.69E-46
MS.gene055616	MS.gene08658	0.82172	3.47E-53	-1.69E-46
MS.gene055616	MS.gene09072	0.823987	1.03E-53	-1.69E-46
MS.gene055616	MS.gene21274	0.801108	1.05E-48	-1.69E-46
MS.gene055616	MS.gene22399	0.805266	1.45E-49	-1.69E-46
MS.gene055616	MS.gene22939	0.812908	3.34E-51	-1.69E-46
MS.gene055616	MS.gene24522	0.801065	1.07E-48	-1.69E-46
MS.gene055616	MS.gene25885	0.809371	1.96E-50	-1.69E-46
MS.gene055616	MS.gene27790	0.802367	5.80E-49	-1.69E-46
MS.gene055616	MS.gene28288	-0.830323	3.13E-55	-1.69E-46
MS.gene055616	MS.gene28912	0.80326	3.79E-49	-1.69E-46
MS.gene055616	MS.gene31351	-0.81379	2.14E-51	-1.69E-46
MS.gene055616	MS.gene36337	-0.808322	3.28E-50	-1.69E-46
MS.gene055616	MS.gene39911	0.830154	3.45E-55	-1.69E-46
MS.gene055616	MS.gene44439	-0.826923	2.08E-54	-1.69E-46
MS.gene055616	MS.gene44440	-0.809022	2.32E-50	-1.69E-46
MS.gene055616	MS.gene45607	-0.817856	2.65E-52	-1.69E-46
MS.gene055616	MS.gene47437	0.822444	2.36E-53	-1.69E-46
MS.gene055616	MS.gene49349	0.826983	2.01E-54	-1.69E-46
MS.gene055616	MS.gene50576	0.833658	4.70E-56	-1.69E-46
MS.gene055616	MS.gene50730	0.801644	8.17E-49	-1.69E-46
MS.gene055616	MS.gene51554	0.80528	1.44E-49	-1.69E-46
MS.gene055616	MS.gene54826	-0.813887	2.04E-51	-1.69E-46
MS.gene055616	MS.gene55081	0.815762	7.83E-52	-1.69E-46
MS.gene055616	MS.gene55771	0.823125	1.64E-53	-1.69E-46
MS.gene055616	MS.gene57602	-0.810725	9.99E-51	-1.69E-46
MS.gene055616	MS.gene60176	-0.829354	5.40E-55	-1.69E-46
MS.gene055616	MS.gene60177	-0.829852	4.08E-55	-1.69E-46
MS.gene055616	MS.gene60269	0.812616	3.88E-51	-1.69E-46
MS.gene055616	MS.gene61144	-0.832076	1.16E-55	-1.69E-46
MS.gene055616	MS.gene61145	-0.822371	2.46E-53	-1.69E-46
MS.gene055616	MS.gene61919	-0.802394	5.73E-49	-1.69E-46
MS.gene055616	MS.gene67597	-0.808063	3.72E-50	-1.69E-46
MS.gene055616	MS.gene70306	-0.828117	1.07E-54	-1.69E-46
MS.gene055616	MS.gene70561	0.811668	6.24E-51	-1.69E-46
MS.gene055616	MS.gene74570	0.808845	2.54E-50	-1.69E-46
MS.gene055616	MS.gene74575	-0.80689	6.60E-50	-1.69E-46
MS.gene055616	MS.gene74984	0.808063	3.72E-50	-1.69E-46
MS.gene055616	MS.gene75761	0.802551	5.32E-49	-1.69E-46
MS.gene055616	MS.gene75915	0.808991	2.36E-50	-1.69E-46
MS.gene055616	MS.gene75918	0.80033	1.52E-48	-1.69E-46
MS.gene055616	MS.gene76418	-0.810102	1.36E-50	-1.69E-46
MS.gene055616	MS.gene77595	0.810551	1.09E-50	-1.69E-46
MS.gene055616	MS.gene78325	0.817462	3.26E-52	-1.69E-46
MS.gene055616	MS.gene78942	-0.80324	3.83E-49	-1.69E-46
MS.gene055616	MS.gene83291	0.800796	1.22E-48	-1.69E-46
MS.gene055616	MS.gene83292	0.817454	3.27E-52	-1.69E-46
MS.gene055616	MS.gene85136	-0.80115	1.03E-48	-1.69E-46
MS.gene055616	MS.gene87466	-0.800527	1.38E-48	-1.69E-46
MS.gene055616	MS.gene90819	0.802434	5.62E-49	-1.69E-46
MS.gene055616	MS.gene91075	0.817613	3.01E-52	-1.69E-46
MS.gene055616	MS.gene91215	0.801005	1.10E-48	-1.69E-46
MS.gene055616	MS.gene91392	-0.806287	8.85E-50	-1.69E-46
MS.gene055616	MS.gene93165	-0.813694	2.25E-51	-1.69E-46
MS.gene055616	MS.gene97258	0.860902	1.49E-63	-1.69E-46
MS.gene055616	MS.gene97259	0.865195	7.04E-65	-1.69E-46
MS.gene055616	MS.gene97726	-0.807636	4.59E-50	-1.69E-46
MS.gene055616	MS.gene99003	0.888721	4.59E-73	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055616.t1	MTR_1g054285	84.804	204	3	4	1	176	1	204	3.37e-114	326
MS.gene055616.t1	MTR_7g093430	54.028	211	61	7	1	176	1	210	7.03e-58	183
MS.gene055616.t1	MTR_4g100550	54.167	120	44	2	59	176	60	170	3.95e-33	119
MS.gene055616.t1	MTR_5g013010	52.672	131	41	4	54	176	69	186	9.97e-33	116
MS.gene055616.t1	MTR_5g013010	53.968	126	37	4	59	176	74	186	1.01e-31	115
MS.gene055616.t1	MTR_2g061030	42.000	250	71	10	1	176	1	250	2.83e-31	115
MS.gene055616.t1	MTR_4g097600	80.000	65	11	1	114	176	113	177	8.50e-29	107
MS.gene055616.t1	MTR_8g006705	54.054	111	45	1	72	176	86	196	6.03e-26	100
MS.gene055616.t1	MTR_5g014890	75.410	61	14	1	117	176	113	173	5.30e-24	95.1
MS.gene055616.t1	MTR_1g017090	46.341	123	51	4	61	176	66	180	2.18e-21	88.6
MS.gene055616.t1	MTR_3g103590	68.333	60	19	0	117	176	136	195	3.34e-21	88.2
MS.gene055616.t1	MTR_4g084750	73.684	57	14	1	121	176	59	115	2.75e-20	84.0
MS.gene055616.t1	MTR_4g126900	69.388	49	15	0	128	176	90	138	3.52e-17	76.3
MS.gene055616.t1	MTR_2g038625	57.353	68	28	1	109	176	66	132	1.75e-16	74.3
MS.gene055616.t1	MTR_2g038580	57.353	68	28	1	109	176	66	132	1.75e-16	74.3
MS.gene055616.t1	MTR_4g107650	50.602	83	37	2	94	176	67	145	2.20e-14	70.1
MS.gene055616.t1	MTR_7g010020	42.391	92	52	1	85	176	40	130	2.97e-14	68.9
MS.gene055616.t1	MTR_8g089895	43.617	94	49	2	83	176	15	104	8.59e-13	65.5
MS.gene055616.t1	MTR_5g038280	48.611	72	34	1	105	176	69	137	1.04e-12	65.1
MS.gene055616.t1	MTR_3g086790	40.196	102	59	2	76	176	10	110	2.46e-12	63.9
MS.gene055616.t1	MTR_6g007647	57.407	54	23	0	123	176	30	83	2.69e-12	63.5
MS.gene055616.t1	MTR_6g007647	57.407	54	23	0	123	176	64	117	3.37e-12	63.5
MS.gene055616.t1	MTR_1g061660	50.909	55	27	0	122	176	55	109	4.01e-12	62.8
MS.gene055616.t1	MTR_8g469430	54.902	51	23	0	126	176	89	139	1.77e-11	61.6
MS.gene055616.t1	MTR_5g039000	50.847	59	29	0	118	176	69	127	2.85e-11	60.8
MS.gene055616.t1	MTR_7g103340	48.276	58	30	0	119	176	56	113	3.54e-11	60.1
MS.gene055616.t1	MTR_6g011610	41.346	104	54	3	79	176	44	146	8.04e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055616.t1	AT5G06710	42.324	241	73	5	1	176	1	240	4.77e-41	139
MS.gene055616.t1	AT5G06710	42.324	241	73	5	1	176	1	240	6.50e-41	140
MS.gene055616.t1	AT5G47370	55.118	127	47	5	59	176	55	180	2.16e-32	117
MS.gene055616.t1	AT4G17460	42.347	196	71	7	3	176	10	185	4.20e-30	111
MS.gene055616.t1	AT3G60390	51.825	137	44	6	59	176	79	212	6.45e-30	111
MS.gene055616.t1	AT4G16780	56.198	121	38	3	59	176	71	179	3.56e-27	103
MS.gene055616.t1	AT2G44910	49.624	133	44	4	60	176	88	213	1.61e-26	102
MS.gene055616.t1	AT2G22800	76.667	60	14	0	117	176	104	163	2.44e-25	99.0
MS.gene055616.t1	AT4G37790	76.667	60	14	0	117	176	117	176	7.28e-25	97.8
MS.gene055616.t1	AT5G06710	36.279	215	71	5	1	150	1	214	3.04e-21	87.4
MS.gene055616.t1	AT5G06710	36.279	215	71	5	1	150	1	214	3.04e-21	87.4
MS.gene055616.t1	AT2G01430	60.294	68	27	0	109	176	122	189	7.00e-21	85.9
MS.gene055616.t1	AT2G01430	60.294	68	27	0	109	176	122	189	2.60e-20	85.5
MS.gene055616.t1	AT1G70920	65.079	63	20	1	116	176	27	89	2.04e-17	75.9
MS.gene055616.t1	AT1G70920	65.079	63	20	1	116	176	57	119	3.48e-17	75.9
MS.gene055616.t1	AT2G36610	45.312	64	27	1	121	176	66	129	3.07e-11	59.7
MS.gene055616.t1	AT3G01470	56.863	51	22	0	126	176	68	118	3.42e-11	60.5

Find 34 sgRNAs with CRISPR-Local

Find 70 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAAAGAGATAGGTAATTT+TGG	0.264059	1.2:+41143081	None:intergenic
AGGAATAACAATGCTGAATA+TGG	0.265099	1.2:-41142375	MS.gene055616:CDS
GGAAGTGATGATGATGAAAA+TGG	0.308043	1.2:-41142312	MS.gene055616:CDS
ATGGAACTTGCTTTGAGCTT+AGG	0.368374	1.2:-41143111	MS.gene055616:CDS
CTTGGTAGTGGATCTTTGTT+GGG	0.374601	1.2:+41143051	None:intergenic
GGAAGAAGGTCTAGTTGAAT+AGG	0.392211	1.2:+41142970	None:intergenic
GTCCTCGTCAAGTTGAAGTT+TGG	0.396562	1.2:-41142072	MS.gene055616:CDS
ACTTGGTAGTGGATCTTTGT+TGG	0.408944	1.2:+41143050	None:intergenic
CTTCGGTCGTCGCCGGAAAA+CGG	0.438226	1.2:+41142469	None:intergenic
TTGCAATGGATTTCAGTATG+AGG	0.457926	1.2:-41142395	MS.gene055616:CDS
TTCTGTGTCACCATTTGCAA+TGG	0.477662	1.2:-41142409	MS.gene055616:CDS
ATACTGAAATCCATTGCAAA+TGG	0.496930	1.2:+41142399	None:intergenic
GATCTAAGAACAGGAGAGAA+AGG	0.503681	1.2:+41142949	None:intergenic
TCGACGTCTTCGGTCGTCGC+CGG	0.507773	1.2:+41142462	None:intergenic
GGTACCGTCGTCGACGTCTT+CGG	0.509499	1.2:+41142452	None:intergenic
AGAAACAAGAGAGAAAATGA+AGG	0.510237	1.2:-41142348	MS.gene055616:CDS
GGTTTGTCAAGAAAAGAGAT+AGG	0.515910	1.2:+41143072	None:intergenic
AATGAAGGTGAAGCTGAAAG+AGG	0.521199	1.2:-41142333	MS.gene055616:CDS
GAAGTGATGATGATGAAAAT+GGG	0.525282	1.2:-41142311	MS.gene055616:CDS
AAATGGTGACACAGAACTGC+TGG	0.531470	1.2:+41142416	None:intergenic
TGTTGGGTTGAGAAGAAACT+TGG	0.533644	1.2:+41143033	None:intergenic
ATGATGAAAATGGGTCAACT+AGG	0.551419	1.2:-41142302	MS.gene055616:CDS
GAACAGGAGAGAAAGGAAGA+AGG	0.553836	1.2:+41142956	None:intergenic
GTTGAGAAGAAACTTGGTAG+TGG	0.575951	1.2:+41143039	None:intergenic
GAAATTTACAGGATTAAGAG+TGG	0.579010	1.2:+41142218	None:intergenic
AGAAGGTCTAGTTGAATAGG+TGG	0.598462	1.2:+41142973	None:intergenic
GGTTTCAAAATAGAAGAGCA+AGG	0.607323	1.2:-41142051	None:intergenic
AATGGTGACACAGAACTGCT+GGG	0.607777	1.2:+41142417	None:intergenic
AGTTTCTTCTCAACCCAACA+AGG	0.609680	1.2:-41143030	MS.gene055616:CDS
AATAACAATGCTGAATATGG+AGG	0.617867	1.2:-41142372	MS.gene055616:CDS
AACCAAACTTCAACTTGACG+AGG	0.618703	1.2:+41142070	None:intergenic
ATGGTGACACAGAACTGCTG+GGG	0.640069	1.2:+41142418	None:intergenic
ACGACCGAAGACGTCGACGA+CGG	0.675975	1.2:-41142456	MS.gene055616:CDS
TGGTGACACAGAACTGCTGG+GGG	0.743324	1.2:+41142419	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAAATAAGAAATTTAC+AGG	+	chr1.2:41142959-41142978	None:intergenic	10.0%
!!	AAATATATAAAACCATTTAG+AGG	+	chr1.2:41142320-41142339	None:intergenic	15.0%
!!!	TGAAATGTCAATTTTTTTAA+CGG	-	chr1.2:41142517-41142536	MS.gene055616:intron	15.0%
!!!	TTGTTTCTTCTTTTTAATTA+AGG	-	chr1.2:41142991-41143010	MS.gene055616:CDS	15.0%
!!	ATAGTAGATAGAAAATTACA+TGG	+	chr1.2:41142283-41142302	None:intergenic	20.0%
!!!	TTTTTGTTTTTGTTATCATC+AGG	-	chr1.2:41142644-41142663	MS.gene055616:intron	20.0%
!	AGATAGAAAATTACATGGTT+GGG	+	chr1.2:41142278-41142297	None:intergenic	25.0%
!	TAGATAGAAAATTACATGGT+TGG	+	chr1.2:41142279-41142298	None:intergenic	25.0%
!!	AGAAAAGAGATAGGTAATTT+TGG	+	chr1.2:41142085-41142104	None:intergenic	25.0%
!!	ATCATTTTCTTTCCTCTAAA+TGG	-	chr1.2:41142305-41142324	MS.gene055616:CDS	25.0%
!!	TTAAAGTGCTTGAAAATTGT+GGG	-	chr1.2:41142420-41142439	MS.gene055616:CDS	25.0%
!!	TTTAAAGTGCTTGAAAATTG+TGG	-	chr1.2:41142419-41142438	MS.gene055616:CDS	25.0%
!!!	TCAATTTTTTTAACGGATCT+AGG	-	chr1.2:41142524-41142543	MS.gene055616:intron	25.0%
	AAAACCTTGAACCAAATCTT+GGG	+	chr1.2:41142458-41142477	None:intergenic	30.0%
	AAAGCTTCAGAAGAAAAAAG+AGG	-	chr1.2:41142157-41142176	MS.gene055616:intron	30.0%
	AATAACAATGCTGAATATGG+AGG	-	chr1.2:41142791-41142810	MS.gene055616:intron	30.0%
	AGAAACAAGAGAGAAAATGA+AGG	-	chr1.2:41142815-41142834	MS.gene055616:intron	30.0%
	AGGAATAACAATGCTGAATA+TGG	-	chr1.2:41142788-41142807	MS.gene055616:intron	30.0%
	ATACTGAAATCCATTGCAAA+TGG	+	chr1.2:41142767-41142786	None:intergenic	30.0%
	GAAATTTACAGGATTAAGAG+TGG	+	chr1.2:41142948-41142967	None:intergenic	30.0%
!	GAAGTGATGATGATGAAAAT+GGG	-	chr1.2:41142852-41142871	MS.gene055616:intron	30.0%
!!!	TTGTTTTTGTTATCATCAGG+TGG	-	chr1.2:41142647-41142666	MS.gene055616:intron	30.0%
	ATGATGAAAATGGGTCAACT+AGG	-	chr1.2:41142861-41142880	MS.gene055616:intron	35.0%
	CAAAACCTTGAACCAAATCT+TGG	+	chr1.2:41142459-41142478	None:intergenic	35.0%
	GGTTTGTCAAGAAAAGAGAT+AGG	+	chr1.2:41142094-41142113	None:intergenic	35.0%
	TTGAATTTGCACCCAAGATT+TGG	-	chr1.2:41142444-41142463	MS.gene055616:CDS	35.0%
!	GGAAGTGATGATGATGAAAA+TGG	-	chr1.2:41142851-41142870	MS.gene055616:intron	35.0%
!	TTGCAATGGATTTCAGTATG+AGG	-	chr1.2:41142768-41142787	MS.gene055616:intron	35.0%
!!!	TTCTGAAGCTTTTCCTTGTT+GGG	+	chr1.2:41142149-41142168	None:intergenic	35.0%
	AACCAAACTTCAACTTGACG+AGG	+	chr1.2:41143096-41143115	None:intergenic	40.0%
	AATGAAGGTGAAGCTGAAAG+AGG	-	chr1.2:41142830-41142849	MS.gene055616:intron	40.0%
	AGAAGGTCTAGTTGAATAGG+TGG	+	chr1.2:41142193-41142212	None:intergenic	40.0%
	AGTTTCTTCTCAACCCAACA+AGG	-	chr1.2:41142133-41142152	MS.gene055616:intron	40.0%
	GATCTAAGAACAGGAGAGAA+AGG	+	chr1.2:41142217-41142236	None:intergenic	40.0%
	GGAAGAAGGTCTAGTTGAAT+AGG	+	chr1.2:41142196-41142215	None:intergenic	40.0%
	GTAGAAGCAAAAACTTGCAC+TGG	-	chr1.2:41143050-41143069	MS.gene055616:CDS	40.0%
	GTTGAGAAGAAACTTGGTAG+TGG	+	chr1.2:41142127-41142146	None:intergenic	40.0%
	TTCTGTGTCACCATTTGCAA+TGG	-	chr1.2:41142754-41142773	MS.gene055616:intron	40.0%
!	ATGGAACTTGCTTTGAGCTT+AGG	-	chr1.2:41142052-41142071	MS.gene055616:CDS	40.0%
!	TTTGTTATCATCAGGTGGAC+CGG	-	chr1.2:41142652-41142671	MS.gene055616:intron	40.0%
!!	ACTTGGTAGTGGATCTTTGT+TGG	+	chr1.2:41142116-41142135	None:intergenic	40.0%
!!	CTTGGTAGTGGATCTTTGTT+GGG	+	chr1.2:41142115-41142134	None:intergenic	40.0%
!!	TGTTGGGTTGAGAAGAAACT+TGG	+	chr1.2:41142133-41142152	None:intergenic	40.0%
!!!	CTTCTGAAGCTTTTCCTTGT+TGG	+	chr1.2:41142150-41142169	None:intergenic	40.0%
	AAATGGTGACACAGAACTGC+TGG	+	chr1.2:41142750-41142769	None:intergenic	45.0%
	AATGGTGACACAGAACTGCT+GGG	+	chr1.2:41142749-41142768	None:intergenic	45.0%
	GAACAGGAGAGAAAGGAAGA+AGG	+	chr1.2:41142210-41142229	None:intergenic	45.0%
!	TGCACCCAAGATTTGGTTCA+AGG	-	chr1.2:41142451-41142470	MS.gene055616:CDS	45.0%
!!	GTCCTCGTCAAGTTGAAGTT+TGG	-	chr1.2:41143091-41143110	MS.gene055616:CDS	45.0%
	ATGGTGACACAGAACTGCTG+GGG	+	chr1.2:41142748-41142767	None:intergenic	50.0%
	GAATGGGGAGGTGAGAAGAA+GGG	+	chr1.2:41142246-41142265	None:intergenic	50.0%
	GGGTGAGGAGATCTAAGAAC+AGG	+	chr1.2:41142226-41142245	None:intergenic	50.0%
	TTACATGGTTGGGTGAGCCA+AGG	+	chr1.2:41142268-41142287	None:intergenic	50.0%
!	GCTAGACGTGAACCGTTTTC+CGG	-	chr1.2:41142682-41142701	MS.gene055616:intron	50.0%
	ACTGCTGGGGGATGACAATG+AGG	+	chr1.2:41142735-41142754	None:intergenic	55.0%
	ATCATCAGGTGGACCGGTGA+GGG	-	chr1.2:41142658-41142677	MS.gene055616:intron	55.0%
	CTTCTCACCTCCCCATTCCT+TGG	-	chr1.2:41142248-41142267	MS.gene055616:CDS	55.0%
	GGAATGGGGAGGTGAGAAGA+AGG	+	chr1.2:41142247-41142266	None:intergenic	55.0%
	GGTTGGGTGAGCCAAGGAAT+GGG	+	chr1.2:41142262-41142281	None:intergenic	55.0%
	GTTGGGTGAGCCAAGGAATG+GGG	+	chr1.2:41142261-41142280	None:intergenic	55.0%
	TATCATCAGGTGGACCGGTG+AGG	-	chr1.2:41142657-41142676	MS.gene055616:intron	55.0%
	TGGTGACACAGAACTGCTGG+GGG	+	chr1.2:41142747-41142766	None:intergenic	55.0%
	TGGTTGGGTGAGCCAAGGAA+TGG	+	chr1.2:41142263-41142282	None:intergenic	55.0%
!	TTCACGTCTAGCTCCCTCAC+CGG	+	chr1.2:41142674-41142693	None:intergenic	55.0%
	ACGACCGAAGACGTCGACGA+CGG	-	chr1.2:41142707-41142726	MS.gene055616:intron	60.0%
	CTTCGGTCGTCGCCGGAAAA+CGG	+	chr1.2:41142697-41142716	None:intergenic	60.0%
	GGGAGGTGAGAAGAAGGGTG+AGG	+	chr1.2:41142241-41142260	None:intergenic	60.0%
	GGTACCGTCGTCGACGTCTT+CGG	+	chr1.2:41142714-41142733	None:intergenic	60.0%
	GGGTGAGCCAAGGAATGGGG+AGG	+	chr1.2:41142258-41142277	None:intergenic	65.0%
	TCGACGTCTTCGGTCGTCGC+CGG	+	chr1.2:41142704-41142723	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	41142052	41143133	41142052	ID=MS.gene055616
chr1.2	mRNA	41142052	41143133	41142052	ID=MS.gene055616.t1;Parent=MS.gene055616
chr1.2	exon	41142960	41143133	41142960	ID=MS.gene055616.t1.exon1;Parent=MS.gene055616.t1
chr1.2	CDS	41142960	41143133	41142960	ID=cds.MS.gene055616.t1;Parent=MS.gene055616.t1
chr1.2	exon	41142227	41142502	41142227	ID=MS.gene055616.t1.exon2;Parent=MS.gene055616.t1
chr1.2	CDS	41142227	41142502	41142227	ID=cds.MS.gene055616.t1;Parent=MS.gene055616.t1
chr1.2	exon	41142052	41142131	41142052	ID=MS.gene055616.t1.exon3;Parent=MS.gene055616.t1
chr1.2	CDS	41142052	41142131	41142052	ID=cds.MS.gene055616.t1;Parent=MS.gene055616.t1

Gene Sequence

>MS.gene055616

ATGGAACTTGCTTTGAGCTTAGGTGACACACCAAAATTACCTATCTCTTTTCTTGACAAACCCAACAAAGATCCACTACCAAGTTTCTTCTCAACCCAACAAGGAAAAGCTTCAGAAGAAAAAAGAGGTTCTTCAGATCCACCTATTCAACTAGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCCTCACCCTTCTTCTCACCTCCCCATTCCTTGGCTCACCCAACCATGTAATTTTCTATCTACTATAAATCATTTTCTTTCCTCTAAATGGTTTTATATATTTGTTTAATATCTAGATAAATTTGTTTAATTTTATTTTGTTTTTATAGATTTAATTTTATCTTTTTTGTTTTTTTTTTTGTTTTAAAGTGCTTGAAAATTGTGGGTTTGAATTTGCACCCAAGATTTGGTTCAAGGTTTTGCATATTCTTGACTAATGCTTATTGAAAAATATTTGTTATGAAATGTCAATTTTTTTAACGGATCTAGGTTACTTCGAGATATTAGTCTTTGCAGTTACGCGCATGAATTCATATTGTTATAAAAAAAAATTGAAAATATATTTAAAGTTGTATATACTCAATCATTTTTTGTTTTTGTTATCATCAGGTGGACCGGTGAGGGAGCTAGACGTGAACCGTTTTCCGGCGACGACCGAAGACGTCGACGACGGTACCTCATTGTCATCCCCCAGCAGTTCTGTGTCACCATTTGCAATGGATTTCAGTATGAGGAATAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGGAAGTGATGATGATGAAAATGGGTCAACTAGGAAGAAACTAAGACTCTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGTTTCAAAGAACACACCACTCTTAATCCTGTAAATTTCTTATTTAATTTTTGTTTATTTACTTGTTTCTTCTTTTTAATTAAGGTTTATTTGTTAATTAATCATGTTTATTTATTTGCTTGTAGAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTTAGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAATAGAAGAGCAAG

Protein sequence

>MS.gene055616.t1

MELALSLGDTPKLPISFLDKPNKDPLPSFFSTQQGKASEEKRGSSDPPIQLDLLPFSPLDVNRFPATTEDVDDGTSLSSPSSSVSPFAMDFSMRNNNAEYGGRNKRENEGEAERGSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRA