Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51105.t1 | XP_003616736.1 | 89.7 | 341 | 19 | 3 | 10 | 349 | 1 | 326 | 3.10E-170 | 607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51105.t1 | F4IH31 | 62.6 | 345 | 108 | 3 | 10 | 348 | 1 | 330 | 1.2e-119 | 431.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51105.t1 | G7K7B4 | 89.7 | 341 | 19 | 3 | 10 | 349 | 1 | 326 | 2.2e-170 | 607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene51105 | 0.809979 | 1.45E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene51105 | 0.800113 | 1.68E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene51105 | 0.808339 | 3.25E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene51105 | 0.817655 | 2.95E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene51105 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene51105 | 0.806467 | 8.11E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene51105 | 0.816877 | 4.41E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene51105 | 0.816524 | 5.29E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51105.t1 | MTR_5g083730 | 91.471 | 340 | 15 | 2 | 10 | 349 | 1 | 326 | 0.0 | 636 |
| MS.gene51105.t1 | MTR_5g083720 | 87.647 | 340 | 28 | 1 | 10 | 349 | 1 | 326 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51105.t1 | AT2G40410 | 66.077 | 339 | 106 | 3 | 10 | 348 | 1 | 330 | 1.60e-163 | 460 |
| MS.gene51105.t1 | AT3G56170 | 62.242 | 339 | 109 | 5 | 10 | 348 | 1 | 320 | 6.22e-151 | 428 |
| MS.gene51105.t1 | AT2G40410 | 62.288 | 236 | 76 | 4 | 10 | 243 | 1 | 225 | 3.14e-98 | 290 |
Find 81 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGAGAGTCCTTATTTA+TGG | 0.141511 | 5.1:+65942752 | MS.gene51105:CDS |
| GGGCGAAGCGAGTTGGATTA+TGG | 0.256348 | 5.1:+65943124 | MS.gene51105:CDS |
| TAGGGATTGTTGACTTTCTA+TGG | 0.278264 | 5.1:+65941597 | MS.gene51105:intron |
| GCACTTACGGTTTCTAGTTC+TGG | 0.284790 | 5.1:-65942975 | None:intergenic |
| ACATGTTGTGTCTTCTAAAA+AGG | 0.296671 | 5.1:+65941080 | MS.gene51105:CDS |
| TCAATTATTCGTTCAACAAT+TGG | 0.299674 | 5.1:+65940736 | MS.gene51105:CDS |
| ACTGATCTTCTCCATAAATA+AGG | 0.312433 | 5.1:-65942763 | None:intergenic |
| CTTGTTATTCTGACATTAGA+TGG | 0.318151 | 5.1:+65941429 | MS.gene51105:CDS |
| TCTCCAATCCCATGGCTTCT+CGG | 0.327793 | 5.1:-65943160 | None:intergenic |
| GCTGCAATGTGCACGTTACT+AGG | 0.332410 | 5.1:-65942330 | None:intergenic |
| CTCCAATCCCATGGCTTCTC+GGG | 0.340831 | 5.1:-65943159 | None:intergenic |
| GGATGATTCTATTTGAAAAC+GGG | 0.359742 | 5.1:+65942524 | MS.gene51105:intron |
| AGATTTCCCTTGAACAATCT+TGG | 0.366156 | 5.1:-65942732 | None:intergenic |
| ACAAGTCTAGCTGCTTCTTC+AGG | 0.380928 | 5.1:-65941411 | None:intergenic |
| TTCATAGTTCCTTCTAGAAC+GGG | 0.384606 | 5.1:-65942370 | None:intergenic |
| GGCGAAGCGAGTTGGATTAT+GGG | 0.387072 | 5.1:+65943125 | MS.gene51105:CDS |
| ACATGTCTGCTTAGTCCTTC+AGG | 0.390784 | 5.1:-65941063 | None:intergenic |
| GGTTGAACAGCTACTTCAAC+TGG | 0.393087 | 5.1:-65941639 | None:intergenic |
| AGGATGATTCTATTTGAAAA+CGG | 0.422857 | 5.1:+65942523 | MS.gene51105:intron |
| GCTGCTTCTTCAGGTGTCCT+AGG | 0.424973 | 5.1:-65941402 | None:intergenic |
| CTGTCCTTTCTCCAATCCCA+TGG | 0.425752 | 5.1:-65943168 | None:intergenic |
| AGGTATAGAAAGTTAATAGA+TGG | 0.432563 | 5.1:+65941357 | MS.gene51105:intron |
| GAGCAGAAGCCCGTTCTAGA+AGG | 0.433716 | 5.1:+65942361 | MS.gene51105:CDS |
| GATCAGTATCAACGTTTAGT+AGG | 0.434441 | 5.1:+65942779 | MS.gene51105:CDS |
| ATATGAAATACACACCTTGC+CGG | 0.439979 | 5.1:+65941692 | MS.gene51105:CDS |
| AGATTATTGACGCAGGATAC+AGG | 0.468754 | 5.1:+65942415 | MS.gene51105:CDS |
| ATCCCGAGAAGCCATGGGAT+TGG | 0.470020 | 5.1:+65943157 | MS.gene51105:CDS |
| TAAGGAATTGATGCTAAAGA+AGG | 0.478599 | 5.1:+65942917 | MS.gene51105:intron |
| AAAAGTATCGGATCCGACTA+AGG | 0.479370 | 5.1:+65942560 | MS.gene51105:CDS |
| TGTTGTTGGTTGGAAGCAAT+TGG | 0.485423 | 5.1:-65940782 | None:intergenic |
| GAACTGACCAAGATTGTTCA+AGG | 0.488734 | 5.1:+65942725 | MS.gene51105:CDS |
| CTTCATAGTTCCTTCTAGAA+CGG | 0.497762 | 5.1:-65942371 | None:intergenic |
| TCTTCAGGTGTCCTAGGTGG+TGG | 0.500714 | 5.1:-65941396 | None:intergenic |
| TAGTTCTGGTCGTTTGTCGT+AGG | 0.512281 | 5.1:-65942961 | None:intergenic |
| GGGACCTGTGATGATTCTCT+AGG | 0.524016 | 5.1:-65942309 | None:intergenic |
| GGATGATCATCAGATGTTGT+TGG | 0.524132 | 5.1:-65940796 | None:intergenic |
| GTTAATAGATGGTTGGAAAG+AGG | 0.525689 | 5.1:+65941368 | MS.gene51105:CDS |
| GAAGCCATGGGATTGGAGAA+AGG | 0.535032 | 5.1:+65943164 | MS.gene51105:CDS |
| GATCATCAGATGTTGTTGGT+TGG | 0.536125 | 5.1:-65940792 | None:intergenic |
| GAAGCCAGGGCGAAGCGAGT+TGG | 0.541941 | 5.1:+65943117 | MS.gene51105:CDS |
| CTGCAATGTGCACGTTACTA+GGG | 0.542697 | 5.1:-65942329 | None:intergenic |
| TAATCCAACTCGCTTCGCCC+TGG | 0.546457 | 5.1:-65943121 | None:intergenic |
| GGACCTGTGATGATTCTCTA+GGG | 0.547117 | 5.1:-65942308 | None:intergenic |
| AAGGAATTGATGCTAAAGAA+GGG | 0.547387 | 5.1:+65942918 | MS.gene51105:intron |
| ATAGAAAGTTAATAGATGGT+TGG | 0.548270 | 5.1:+65941361 | MS.gene51105:CDS |
| CCTCCTACATCTTTACCTCA+TGG | 0.550484 | 5.1:+65941663 | MS.gene51105:CDS |
| TAATTTGATTCTTACCGGCA+AGG | 0.551993 | 5.1:-65941706 | None:intergenic |
| TAACTTTCAAAACACCTCCC+AGG | 0.556186 | 5.1:+65940903 | MS.gene51105:CDS |
| TGTTTGATGAGTACCTTAGT+CGG | 0.557577 | 5.1:-65942573 | None:intergenic |
| GTTGGAAGCAATTGGCATAG+AGG | 0.559396 | 5.1:-65940774 | None:intergenic |
| CCAGAAAACGCAATGCCGTA+CGG | 0.562580 | 5.1:+65942686 | MS.gene51105:CDS |
| ACTCCATGAGGTAAAGATGT+AGG | 0.574348 | 5.1:-65941666 | None:intergenic |
| ACGAATAATTGAAGAAACCA+TGG | 0.578705 | 5.1:-65940725 | None:intergenic |
| ACTAGTGGGAGAAAGAAGCC+AGG | 0.584912 | 5.1:+65943103 | MS.gene51105:intron |
| GAAACACCAACGGTGGATTG+TGG | 0.598681 | 5.1:-65940817 | None:intergenic |
| GAAACACCAACGGTGGATTG+TGG | 0.598681 | 5.1:-65940859 | None:intergenic |
| TGAGGTAAAGATGTAGGAGG+AGG | 0.604055 | 5.1:-65941660 | None:intergenic |
| CACAAACAGATTATTGACGC+AGG | 0.615174 | 5.1:+65942408 | MS.gene51105:CDS |
| TGCTAAAGAAGGGTTTAGCA+TGG | 0.615254 | 5.1:+65942928 | MS.gene51105:CDS |
| AAGAGGCAAGGCCACCACCT+AGG | 0.618732 | 5.1:+65941385 | MS.gene51105:CDS |
| TAGATGGTTGGAAAGAGGCA+AGG | 0.625445 | 5.1:+65941373 | MS.gene51105:CDS |
| GCTTCTTCAGGTGTCCTAGG+TGG | 0.638052 | 5.1:-65941399 | None:intergenic |
| GATGCAAAAGCAGTGGCAGA+TGG | 0.640006 | 5.1:+65942252 | MS.gene51105:CDS |
| GATCATCCACAATCCACCGT+TGG | 0.640077 | 5.1:+65940811 | MS.gene51105:CDS |
| GATCATCCACAATCCACCGT+TGG | 0.640077 | 5.1:+65940853 | MS.gene51105:CDS |
| CCATGAGGTAAAGATGTAGG+AGG | 0.640081 | 5.1:-65941663 | None:intergenic |
| AAAGCAGTGGCAGATGGTGA+TGG | 0.640689 | 5.1:+65942258 | MS.gene51105:CDS |
| AGACCCTAGAGAATCATCAC+AGG | 0.641836 | 5.1:+65942305 | MS.gene51105:CDS |
| ACGGGCTTCTGCTCTATGCA+CGG | 0.644387 | 5.1:-65942352 | None:intergenic |
| AACTGACCAAGATTGTTCAA+GGG | 0.653454 | 5.1:+65942726 | MS.gene51105:CDS |
| ATTTCATATTGTACTCCATG+AGG | 0.657234 | 5.1:-65941678 | None:intergenic |
| CTAGGTTGATGCAAAAGCAG+TGG | 0.660141 | 5.1:+65942245 | MS.gene51105:intron |
| CTAGTGGGAGAAAGAAGCCA+GGG | 0.666120 | 5.1:+65943104 | MS.gene51105:intron |
| AGCAAGAGCTGAAACACCAA+CGG | 0.667239 | 5.1:-65940869 | None:intergenic |
| AGCAAGAGCTGAAACACCAA+CGG | 0.669678 | 5.1:-65940827 | None:intergenic |
| GATGATTCTATTTGAAAACG+GGG | 0.671612 | 5.1:+65942525 | MS.gene51105:CDS |
| TTCTAGAAGGAACTATGAAG+AGG | 0.673353 | 5.1:+65942374 | MS.gene51105:CDS |
| TCAACTGGAGTATGTGACAG+TGG | 0.679694 | 5.1:-65941624 | None:intergenic |
| AACAAAATAGGTTACCTGGG+AGG | 0.716149 | 5.1:-65940917 | None:intergenic |
| AAGAGCTGAAACACCAACGG+TGG | 0.734495 | 5.1:-65940824 | None:intergenic |
| AAGAGCTGAAACACCAACGG+TGG | 0.734495 | 5.1:-65940866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTATTTTGAATTTGA+AGG | + | chr5.1:65941337-65941356 | MS.gene51105:intron | 10.0% |
| !! | TACAAATAGTTATCAAATAA+CGG | + | chr5.1:65941818-65941837 | MS.gene51105:intron | 15.0% |
| !! | TTAAATTTCAGATACTAAAA+CGG | + | chr5.1:65942132-65942151 | MS.gene51105:intron | 15.0% |
| !! | AATTAAGTAGAATTGAAGTT+TGG | - | chr5.1:65941491-65941510 | None:intergenic | 20.0% |
| !! | ATAATATAAGCAAGCATTAA+AGG | - | chr5.1:65941326-65941345 | None:intergenic | 20.0% |
| !! | ATGCTTATAATTTAACAAGA+GGG | - | chr5.1:65942163-65942182 | None:intergenic | 20.0% |
| !! | TAATATAAGCAAGCATTAAA+GGG | - | chr5.1:65941325-65941344 | None:intergenic | 20.0% |
| !! | TATGCTTATAATTTAACAAG+AGG | - | chr5.1:65942164-65942183 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGAGTAACAAAAT+AGG | - | chr5.1:65940932-65940951 | None:intergenic | 20.0% |
| !!! | GTTGATTTCTTTTTATGATA+AGG | + | chr5.1:65942899-65942918 | MS.gene51105:intron | 20.0% |
| !!! | GTTTTAGTATCTGAAATTTA+AGG | - | chr5.1:65942133-65942152 | None:intergenic | 20.0% |
| !!! | GTTTTGTTGTTTGATTTATA+GGG | + | chr5.1:65941579-65941598 | MS.gene51105:intron | 20.0% |
| !!! | TCTGAAATTTAAGGATAATT+TGG | - | chr5.1:65942124-65942143 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTGTTTGATTTAT+AGG | + | chr5.1:65941578-65941597 | MS.gene51105:intron | 20.0% |
| ! | AATAGTTGTCTGTTCAAATT+CGG | - | chr5.1:65941780-65941799 | None:intergenic | 25.0% |
| ! | AATTTGAACAGACAACTATT+CGG | + | chr5.1:65941780-65941799 | MS.gene51105:intron | 25.0% |
| ! | ACATAAAAAAGAAGATGTTG+AGG | + | chr5.1:65941452-65941471 | MS.gene51105:CDS | 25.0% |
| ! | AGGATGATTCTATTTGAAAA+CGG | + | chr5.1:65942523-65942542 | MS.gene51105:intron | 25.0% |
| ! | AGGTATAGAAAGTTAATAGA+TGG | + | chr5.1:65941357-65941376 | MS.gene51105:intron | 25.0% |
| ! | ATAGAAAGTTAATAGATGGT+TGG | + | chr5.1:65941361-65941380 | MS.gene51105:CDS | 25.0% |
| ! | GATAGTAATTTGATTCTTAC+CGG | - | chr5.1:65941714-65941733 | None:intergenic | 25.0% |
| ! | GCAAACTGTAATTAATAACT+CGG | + | chr5.1:65941887-65941906 | MS.gene51105:intron | 25.0% |
| ! | GTAAAAGAAAATTACACTGA+CGG | + | chr5.1:65941271-65941290 | MS.gene51105:intron | 25.0% |
| ! | GTGAAATTTGTACAAACAAA+TGG | + | chr5.1:65941859-65941878 | MS.gene51105:intron | 25.0% |
| ! | TATATGCACATGTTACAAAA+TGG | - | chr5.1:65941013-65941032 | None:intergenic | 25.0% |
| ! | TCAATTATTCGTTCAACAAT+TGG | + | chr5.1:65940736-65940755 | MS.gene51105:CDS | 25.0% |
| ! | TGTAAGAACATAAGAAAGTT+AGG | - | chr5.1:65943084-65943103 | None:intergenic | 25.0% |
| !! | AAATCCTAGCTAAAAAGTAT+CGG | + | chr5.1:65942548-65942567 | MS.gene51105:CDS | 25.0% |
| !! | AATTGTGTATTTGGTTTAAC+GGG | + | chr5.1:65943041-65943060 | MS.gene51105:intron | 25.0% |
| !! | GAATTGTGTATTTGGTTTAA+CGG | + | chr5.1:65943040-65943059 | MS.gene51105:intron | 25.0% |
| !! | GCATTAAAGGGTATAATAAT+TGG | - | chr5.1:65941313-65941332 | None:intergenic | 25.0% |
| !! | TGGTAAAAAGAGTAGAATTT+TGG | - | chr5.1:65940984-65941003 | None:intergenic | 25.0% |
| !! | TTGTAATAACGTTTTTGTAC+AGG | + | chr5.1:65942811-65942830 | MS.gene51105:CDS | 25.0% |
| AAACGCATGAATTGTGTATT+TGG | + | chr5.1:65943032-65943051 | MS.gene51105:intron | 30.0% | |
| AAGGAATTGATGCTAAAGAA+GGG | + | chr5.1:65942918-65942937 | MS.gene51105:intron | 30.0% | |
| ACAGTGCATAGAAATTAATC+TGG | - | chr5.1:65941187-65941206 | None:intergenic | 30.0% | |
| ACTGATCTTCTCCATAAATA+AGG | - | chr5.1:65942766-65942785 | None:intergenic | 30.0% | |
| ACTGCATAAATTGAGCAATT+TGG | + | chr5.1:65941940-65941959 | MS.gene51105:intron | 30.0% | |
| AGTAACAAAATAGGTTACCT+GGG | - | chr5.1:65940923-65940942 | None:intergenic | 30.0% | |
| ATAAACGAGTTTGTGATCAA+TGG | + | chr5.1:65942064-65942083 | MS.gene51105:intron | 30.0% | |
| ATTTCATATTGTACTCCATG+AGG | - | chr5.1:65941681-65941700 | None:intergenic | 30.0% | |
| CCTAATCAAGAAAACAACAT+TGG | - | chr5.1:65942506-65942525 | None:intergenic | 30.0% | |
| GATGATTCTATTTGAAAACG+GGG | + | chr5.1:65942525-65942544 | MS.gene51105:CDS | 30.0% | |
| GGATGATTCTATTTGAAAAC+GGG | + | chr5.1:65942524-65942543 | MS.gene51105:intron | 30.0% | |
| GTGTGTATGAAAATGCATTT+GGG | + | chr5.1:65943003-65943022 | MS.gene51105:intron | 30.0% | |
| TAAGGAATTGATGCTAAAGA+AGG | + | chr5.1:65942917-65942936 | MS.gene51105:intron | 30.0% | |
| TATGCAGTATGAGACTAAAT+AGG | - | chr5.1:65941928-65941947 | None:intergenic | 30.0% | |
| TCTTATGTTCTTACACTAGT+GGG | + | chr5.1:65943089-65943108 | MS.gene51105:intron | 30.0% | |
| TGTGTATGAAAATGCATTTG+GGG | + | chr5.1:65943004-65943023 | MS.gene51105:intron | 30.0% | |
| TTCTTATGTTCTTACACTAG+TGG | + | chr5.1:65943088-65943107 | MS.gene51105:intron | 30.0% | |
| ! | ACATGTTGTGTCTTCTAAAA+AGG | + | chr5.1:65941080-65941099 | MS.gene51105:CDS | 30.0% |
| ! | ATTGTGTATTTGGTTTAACG+GGG | + | chr5.1:65943042-65943061 | MS.gene51105:intron | 30.0% |
| ! | TCTTTGAGAGTCCTTATTTA+TGG | + | chr5.1:65942752-65942771 | MS.gene51105:CDS | 30.0% |
| !! | ATGAACTCTAGAACAAAAAC+AGG | + | chr5.1:65942651-65942670 | MS.gene51105:intron | 30.0% |
| !! | ATGATTTGATGATGAACATG+TGG | + | chr5.1:65942189-65942208 | MS.gene51105:intron | 30.0% |
| !! | CTTGTTATTCTGACATTAGA+TGG | + | chr5.1:65941429-65941448 | MS.gene51105:CDS | 30.0% |
| !! | GTAGAATTTTGGTAAGTTTG+AGG | - | chr5.1:65940973-65940992 | None:intergenic | 30.0% |
| !! | TGAACTCTAGAACAAAAACA+GGG | + | chr5.1:65942652-65942671 | MS.gene51105:intron | 30.0% |
| !!! | AATCTTTTTTAGGTTCCTGA+AGG | + | chr5.1:65941048-65941067 | MS.gene51105:intron | 30.0% |
| !!! | CCAATGTTGTTTTCTTGATT+AGG | + | chr5.1:65942503-65942522 | MS.gene51105:intron | 30.0% |
| !!! | GTTTTAGCTTTTTTTCCGTA+CGG | - | chr5.1:65942704-65942723 | None:intergenic | 30.0% |
| !!! | TGATTCATCGATTTTGCAAT+TGG | + | chr5.1:65942221-65942240 | MS.gene51105:intron | 30.0% |
| AACTGACCAAGATTGTTCAA+GGG | + | chr5.1:65942726-65942745 | MS.gene51105:CDS | 35.0% | |
| AGATTTCCCTTGAACAATCT+TGG | - | chr5.1:65942735-65942754 | None:intergenic | 35.0% | |
| ATACACACCATTAGCACTTA+CGG | - | chr5.1:65942991-65943010 | None:intergenic | 35.0% | |
| ATATGAAATACACACCTTGC+CGG | + | chr5.1:65941692-65941711 | MS.gene51105:CDS | 35.0% | |
| ATGCACATGTTACAAAATGG+TGG | - | chr5.1:65941010-65941029 | None:intergenic | 35.0% | |
| GAGTAACAAAATAGGTTACC+TGG | - | chr5.1:65940924-65940943 | None:intergenic | 35.0% | |
| GATCAGTATCAACGTTTAGT+AGG | + | chr5.1:65942779-65942798 | MS.gene51105:CDS | 35.0% | |
| GGTGTGTATGAAAATGCATT+TGG | + | chr5.1:65943002-65943021 | MS.gene51105:intron | 35.0% | |
| GTTAATAGATGGTTGGAAAG+AGG | + | chr5.1:65941368-65941387 | MS.gene51105:CDS | 35.0% | |
| TAATTTGATTCTTACCGGCA+AGG | - | chr5.1:65941709-65941728 | None:intergenic | 35.0% | |
| TGCACATGTTACAAAATGGT+GGG | - | chr5.1:65941009-65941028 | None:intergenic | 35.0% | |
| TGTTTGATGAGTACCTTAGT+CGG | - | chr5.1:65942576-65942595 | None:intergenic | 35.0% | |
| ! | CTTCATAGTTCCTTCTAGAA+CGG | - | chr5.1:65942374-65942393 | None:intergenic | 35.0% |
| ! | TGTCTAGCATTGCTGTTAAA+TGG | + | chr5.1:65941739-65941758 | MS.gene51105:intron | 35.0% |
| ! | TTCTAGAAGGAACTATGAAG+AGG | + | chr5.1:65942374-65942393 | MS.gene51105:CDS | 35.0% |
| ! | TTGTGTATTTGGTTTAACGG+GGG | + | chr5.1:65943043-65943062 | MS.gene51105:intron | 35.0% |
| !! | ATCGATTTTGCAATTGGACT+AGG | + | chr5.1:65942227-65942246 | MS.gene51105:intron | 35.0% |
| !! | GAACTCTAGAACAAAAACAG+GGG | + | chr5.1:65942653-65942672 | MS.gene51105:intron | 35.0% |
| !! | TAGGGATTGTTGACTTTCTA+TGG | + | chr5.1:65941597-65941616 | MS.gene51105:intron | 35.0% |
| !! | TTCATAGTTCCTTCTAGAAC+GGG | - | chr5.1:65942373-65942392 | None:intergenic | 35.0% |
| AAAAAATCCCGAGAAGCCAT+GGG | + | chr5.1:65943152-65943171 | MS.gene51105:CDS | 40.0% | |
| AACAAAATAGGTTACCTGGG+AGG | - | chr5.1:65940920-65940939 | None:intergenic | 40.0% | |
| ACTCCATGAGGTAAAGATGT+AGG | - | chr5.1:65941669-65941688 | None:intergenic | 40.0% | |
| AGATTATTGACGCAGGATAC+AGG | + | chr5.1:65942415-65942434 | MS.gene51105:CDS | 40.0% | |
| CACAAACAGATTATTGACGC+AGG | + | chr5.1:65942408-65942427 | MS.gene51105:CDS | 40.0% | |
| CTAAAAAGGCTCAAGCTATG+TGG | + | chr5.1:65941094-65941113 | MS.gene51105:CDS | 40.0% | |
| CTAGAAACCGTAAGTGCTAA+TGG | + | chr5.1:65942981-65943000 | MS.gene51105:intron | 40.0% | |
| GAACTGACCAAGATTGTTCA+AGG | + | chr5.1:65942725-65942744 | MS.gene51105:CDS | 40.0% | |
| GATCATCAGATGTTGTTGGT+TGG | - | chr5.1:65940795-65940814 | None:intergenic | 40.0% | |
| GCACATGTTACAAAATGGTG+GGG | - | chr5.1:65941008-65941027 | None:intergenic | 40.0% | |
| GGATGATCATCAGATGTTGT+TGG | - | chr5.1:65940799-65940818 | None:intergenic | 40.0% | |
| TAACTTTCAAAACACCTCCC+AGG | + | chr5.1:65940903-65940922 | MS.gene51105:CDS | 40.0% | |
| TGCTAAAGAAGGGTTTAGCA+TGG | + | chr5.1:65942928-65942947 | MS.gene51105:CDS | 40.0% | |
| TTAACGGGGGAAAACATGAT+AGG | + | chr5.1:65943056-65943075 | MS.gene51105:intron | 40.0% | |
| ! | ATGTTACAAAATGGTGGGGT+TGG | - | chr5.1:65941004-65941023 | None:intergenic | 40.0% |
| ! | CTAGCATTGCTGTTAAATGG+CGG | + | chr5.1:65941742-65941761 | MS.gene51105:intron | 40.0% |
| ! | TGTTGTTGGTTGGAAGCAAT+TGG | - | chr5.1:65940785-65940804 | None:intergenic | 40.0% |
| !! | AAAAGTATCGGATCCGACTA+AGG | + | chr5.1:65942560-65942579 | MS.gene51105:CDS | 40.0% |
| !!! | GGATCCGATACTTTTTAGCT+AGG | - | chr5.1:65942555-65942574 | None:intergenic | 40.0% |
| ACAAGTCTAGCTGCTTCTTC+AGG | - | chr5.1:65941414-65941433 | None:intergenic | 45.0% | |
| ACATGTCTGCTTAGTCCTTC+AGG | - | chr5.1:65941066-65941085 | None:intergenic | 45.0% | |
| AGACCCTAGAGAATCATCAC+AGG | + | chr5.1:65942305-65942324 | MS.gene51105:CDS | 45.0% | |
| AGCAAGAGCTGAAACACCAA+CGG | - | chr5.1:65940830-65940849 | None:intergenic | 45.0% | |
| CAAAAAATCCCGAGAAGCCA+TGG | + | chr5.1:65943151-65943170 | MS.gene51105:CDS | 45.0% | |
| CCATGAGGTAAAGATGTAGG+AGG | - | chr5.1:65941666-65941685 | None:intergenic | 45.0% | |
| CCTCCTACATCTTTACCTCA+TGG | + | chr5.1:65941663-65941682 | MS.gene51105:CDS | 45.0% | |
| CTGCAATGTGCACGTTACTA+GGG | - | chr5.1:65942332-65942351 | None:intergenic | 45.0% | |
| GGACCTGTGATGATTCTCTA+GGG | - | chr5.1:65942311-65942330 | None:intergenic | 45.0% | |
| GGTTGAACAGCTACTTCAAC+TGG | - | chr5.1:65941642-65941661 | None:intergenic | 45.0% | |
| GTTGGAAGCAATTGGCATAG+AGG | - | chr5.1:65940777-65940796 | None:intergenic | 45.0% | |
| TAGATGGTTGGAAAGAGGCA+AGG | + | chr5.1:65941373-65941392 | MS.gene51105:CDS | 45.0% | |
| TATTGACGCAGGATACAGGT+TGG | + | chr5.1:65942419-65942438 | MS.gene51105:intron | 45.0% | |
| TCAACTGGAGTATGTGACAG+TGG | - | chr5.1:65941627-65941646 | None:intergenic | 45.0% | |
| TGAGGTAAAGATGTAGGAGG+AGG | - | chr5.1:65941663-65941682 | None:intergenic | 45.0% | |
| !! | CTAGGTTGATGCAAAAGCAG+TGG | + | chr5.1:65942245-65942264 | MS.gene51105:intron | 45.0% |
| !! | GCACTTACGGTTTCTAGTTC+TGG | - | chr5.1:65942978-65942997 | None:intergenic | 45.0% |
| !! | TAGTTCTGGTCGTTTGTCGT+AGG | - | chr5.1:65942964-65942983 | None:intergenic | 45.0% |
| !!! | TTTATTTTTTAATCTTTTTT+AGG | + | chr5.1:65941038-65941057 | MS.gene51105:intron | 5.0% |
| AAAGCAGTGGCAGATGGTGA+TGG | + | chr5.1:65942258-65942277 | MS.gene51105:CDS | 50.0% | |
| AAGAGCTGAAACACCAACGG+TGG | - | chr5.1:65940827-65940846 | None:intergenic | 50.0% | |
| ACTAGTGGGAGAAAGAAGCC+AGG | + | chr5.1:65943103-65943122 | MS.gene51105:intron | 50.0% | |
| CCAGAAAACGCAATGCCGTA+CGG | + | chr5.1:65942686-65942705 | MS.gene51105:CDS | 50.0% | |
| CTAGTGGGAGAAAGAAGCCA+GGG | + | chr5.1:65943104-65943123 | MS.gene51105:intron | 50.0% | |
| CTGTCCTTTCTCCAATCCCA+TGG | - | chr5.1:65943171-65943190 | None:intergenic | 50.0% | |
| GAAGCCATGGGATTGGAGAA+AGG | + | chr5.1:65943164-65943183 | MS.gene51105:CDS | 50.0% | |
| GATCATCCACAATCCACCGT+TGG | + | chr5.1:65940811-65940830 | MS.gene51105:CDS | 50.0% | |
| GATGCAAAAGCAGTGGCAGA+TGG | + | chr5.1:65942252-65942271 | MS.gene51105:CDS | 50.0% | |
| GCTGCAATGTGCACGTTACT+AGG | - | chr5.1:65942333-65942352 | None:intergenic | 50.0% | |
| GGGACCTGTGATGATTCTCT+AGG | - | chr5.1:65942312-65942331 | None:intergenic | 50.0% | |
| TCTCCAATCCCATGGCTTCT+CGG | - | chr5.1:65943163-65943182 | None:intergenic | 50.0% | |
| ! | GGCGAAGCGAGTTGGATTAT+GGG | + | chr5.1:65943125-65943144 | MS.gene51105:CDS | 50.0% |
| !! | GAAACACCAACGGTGGATTG+TGG | - | chr5.1:65940820-65940839 | None:intergenic | 50.0% |
| ACGGGCTTCTGCTCTATGCA+CGG | - | chr5.1:65942355-65942374 | None:intergenic | 55.0% | |
| ATCCCGAGAAGCCATGGGAT+TGG | + | chr5.1:65943157-65943176 | MS.gene51105:CDS | 55.0% | |
| CTCCAATCCCATGGCTTCTC+GGG | - | chr5.1:65943162-65943181 | None:intergenic | 55.0% | |
| GCTGCTTCTTCAGGTGTCCT+AGG | - | chr5.1:65941405-65941424 | None:intergenic | 55.0% | |
| GCTTCTTCAGGTGTCCTAGG+TGG | - | chr5.1:65941402-65941421 | None:intergenic | 55.0% | |
| TAATCCAACTCGCTTCGCCC+TGG | - | chr5.1:65943124-65943143 | None:intergenic | 55.0% | |
| TCTTCAGGTGTCCTAGGTGG+TGG | - | chr5.1:65941399-65941418 | None:intergenic | 55.0% | |
| ! | CCGTACGGCATTGCGTTTTC+TGG | - | chr5.1:65942689-65942708 | None:intergenic | 55.0% |
| ! | GAGCAGAAGCCCGTTCTAGA+AGG | + | chr5.1:65942361-65942380 | MS.gene51105:CDS | 55.0% |
| ! | GGGCGAAGCGAGTTGGATTA+TGG | + | chr5.1:65943124-65943143 | MS.gene51105:CDS | 55.0% |
| AAGAGGCAAGGCCACCACCT+AGG | + | chr5.1:65941385-65941404 | MS.gene51105:CDS | 60.0% | |
| GAAGCCAGGGCGAAGCGAGT+TGG | + | chr5.1:65943117-65943136 | MS.gene51105:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 65940727 | 65943200 | 65940727 | ID=MS.gene51105 |
| chr5.1 | mRNA | 65940727 | 65943200 | 65940727 | ID=MS.gene51105.t1;Parent=MS.gene51105 |
| chr5.1 | exon | 65940727 | 65940924 | 65940727 | ID=MS.gene51105.t1.exon1;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65940727 | 65940924 | 65940727 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65941060 | 65941115 | 65941060 | ID=MS.gene51105.t1.exon2;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65941060 | 65941115 | 65941060 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65941359 | 65941473 | 65941359 | ID=MS.gene51105.t1.exon3;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65941359 | 65941473 | 65941359 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65941600 | 65941713 | 65941600 | ID=MS.gene51105.t1.exon4;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65941600 | 65941713 | 65941600 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65942249 | 65942436 | 65942249 | ID=MS.gene51105.t1.exon5;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65942249 | 65942436 | 65942249 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65942525 | 65942581 | 65942525 | ID=MS.gene51105.t1.exon6;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65942525 | 65942581 | 65942525 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65942673 | 65942832 | 65942673 | ID=MS.gene51105.t1.exon7;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65942673 | 65942832 | 65942673 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65942921 | 65942989 | 65942921 | ID=MS.gene51105.t1.exon8;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65942921 | 65942989 | 65942921 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| chr5.1 | exon | 65943108 | 65943200 | 65943108 | ID=MS.gene51105.t1.exon9;Parent=MS.gene51105.t1 |
| chr5.1 | CDS | 65943108 | 65943200 | 65943108 | ID=cds.MS.gene51105.t1;Parent=MS.gene51105.t1 |
| Gene Sequence |
| Protein sequence |
