Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51177.t1 | XP_003624144.1 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 8.40E-195 | 689.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51177.t1 | Q9FFD0 | 66.4 | 363 | 110 | 1 | 1 | 363 | 1 | 351 | 2.4e-129 | 463.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51177.t1 | Q673E6 | 98.9 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 6.1e-195 | 689.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051509 | MS.gene51177 | 0.819778 | 9.72E-53 | -1.69E-46 |
| MS.gene052066 | MS.gene51177 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene059517 | MS.gene51177 | 0.823384 | 1.43E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51177.t1 | MTR_7g079720 | 98.898 | 363 | 4 | 0 | 1 | 363 | 1 | 363 | 0.0 | 726 |
| MS.gene51177.t1 | MTR_7g009370 | 39.889 | 361 | 209 | 2 | 1 | 359 | 1 | 355 | 1.28e-94 | 286 |
| MS.gene51177.t1 | MTR_6g011400 | 39.452 | 365 | 211 | 3 | 1 | 360 | 1 | 360 | 4.18e-89 | 272 |
| MS.gene51177.t1 | MTR_8g107360 | 47.368 | 190 | 94 | 2 | 175 | 359 | 334 | 522 | 8.12e-56 | 191 |
| MS.gene51177.t1 | MTR_8g107360 | 50.000 | 156 | 77 | 1 | 1 | 155 | 1 | 156 | 3.29e-45 | 162 |
| MS.gene51177.t1 | MTR_7g089360 | 48.876 | 178 | 86 | 1 | 187 | 359 | 412 | 589 | 6.51e-54 | 187 |
| MS.gene51177.t1 | MTR_7g089360 | 46.193 | 197 | 94 | 2 | 1 | 188 | 1 | 194 | 1.43e-49 | 175 |
| MS.gene51177.t1 | MTR_4g127100 | 45.408 | 196 | 95 | 2 | 169 | 359 | 435 | 623 | 2.34e-52 | 183 |
| MS.gene51177.t1 | MTR_4g127100 | 49.359 | 156 | 78 | 1 | 1 | 155 | 1 | 156 | 1.05e-47 | 171 |
| MS.gene51177.t1 | MTR_4g084870 | 49.412 | 170 | 81 | 1 | 195 | 359 | 488 | 657 | 5.78e-52 | 183 |
| MS.gene51177.t1 | MTR_4g084870 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 2.89e-48 | 173 |
| MS.gene51177.t1 | MTR_1g030890 | 52.632 | 152 | 72 | 0 | 208 | 359 | 468 | 619 | 2.15e-51 | 181 |
| MS.gene51177.t1 | MTR_1g030890 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 2.30e-47 | 170 |
| MS.gene51177.t1 | MTR_6g069510 | 42.381 | 210 | 112 | 2 | 159 | 359 | 393 | 602 | 5.79e-51 | 179 |
| MS.gene51177.t1 | MTR_6g069510 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.56e-49 | 175 |
| MS.gene51177.t1 | MTR_2g038470 | 43.842 | 203 | 109 | 1 | 164 | 361 | 307 | 509 | 1.11e-50 | 177 |
| MS.gene51177.t1 | MTR_2g038470 | 45.806 | 155 | 84 | 0 | 1 | 155 | 1 | 155 | 1.34e-42 | 155 |
| MS.gene51177.t1 | MTR_7g089360 | 46.193 | 197 | 94 | 2 | 1 | 188 | 1 | 194 | 1.41e-49 | 175 |
| MS.gene51177.t1 | MTR_7g089360 | 47.531 | 162 | 80 | 1 | 187 | 343 | 412 | 573 | 1.60e-45 | 164 |
| MS.gene51177.t1 | MTR_4g127100 | 49.359 | 156 | 78 | 1 | 1 | 155 | 1 | 156 | 3.36e-48 | 171 |
| MS.gene51177.t1 | MTR_4g127100 | 40.196 | 102 | 49 | 2 | 169 | 265 | 435 | 529 | 2.30e-14 | 74.7 |
| MS.gene51177.t1 | MTR_4g127090 | 48.718 | 156 | 79 | 1 | 1 | 155 | 1 | 156 | 6.26e-48 | 171 |
| MS.gene51177.t1 | MTR_4g127090 | 45.596 | 193 | 99 | 2 | 169 | 359 | 377 | 565 | 1.38e-47 | 169 |
| MS.gene51177.t1 | MTR_1g030890 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 9.89e-48 | 169 |
| MS.gene51177.t1 | MTR_1g030890 | 49.091 | 55 | 28 | 0 | 208 | 262 | 468 | 522 | 1.46e-11 | 65.9 |
| MS.gene51177.t1 | MTR_1g029190 | 48.235 | 170 | 83 | 1 | 195 | 359 | 356 | 525 | 2.31e-44 | 160 |
| MS.gene51177.t1 | MTR_1g029190 | 47.742 | 155 | 81 | 0 | 1 | 155 | 1 | 155 | 7.76e-42 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51177.t1 | AT5G16530 | 69.146 | 363 | 100 | 2 | 1 | 363 | 1 | 351 | 0.0 | 510 |
| MS.gene51177.t1 | AT5G16530 | 68.235 | 340 | 96 | 2 | 1 | 340 | 1 | 328 | 2.07e-167 | 470 |
| MS.gene51177.t1 | AT5G15100 | 36.729 | 373 | 218 | 4 | 1 | 361 | 1 | 367 | 2.54e-84 | 260 |
| MS.gene51177.t1 | AT5G57090 | 47.027 | 185 | 92 | 2 | 180 | 359 | 362 | 545 | 5.61e-55 | 189 |
| MS.gene51177.t1 | AT5G57090 | 57.407 | 54 | 23 | 0 | 102 | 155 | 2 | 55 | 3.74e-11 | 64.7 |
| MS.gene51177.t1 | AT5G57090 | 47.027 | 185 | 92 | 2 | 180 | 359 | 462 | 645 | 3.85e-54 | 189 |
| MS.gene51177.t1 | AT5G57090 | 51.613 | 155 | 75 | 0 | 1 | 155 | 1 | 155 | 7.10e-49 | 174 |
| MS.gene51177.t1 | AT2G01420 | 50.000 | 168 | 79 | 1 | 197 | 359 | 447 | 614 | 8.74e-53 | 184 |
| MS.gene51177.t1 | AT2G01420 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 9.35e-51 | 179 |
| MS.gene51177.t1 | AT2G01420 | 50.000 | 168 | 79 | 1 | 197 | 359 | 443 | 610 | 9.43e-53 | 184 |
| MS.gene51177.t1 | AT2G01420 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 1.06e-50 | 179 |
| MS.gene51177.t1 | AT2G01420 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 3.24e-51 | 178 |
| MS.gene51177.t1 | AT2G01420 | 42.254 | 71 | 36 | 1 | 197 | 262 | 447 | 517 | 2.43e-11 | 65.5 |
| MS.gene51177.t1 | AT1G73590 | 45.024 | 211 | 97 | 4 | 168 | 359 | 410 | 620 | 1.93e-50 | 178 |
| MS.gene51177.t1 | AT1G73590 | 52.258 | 155 | 74 | 0 | 1 | 155 | 1 | 155 | 1.51e-48 | 173 |
| MS.gene51177.t1 | AT1G70940 | 53.548 | 155 | 72 | 0 | 1 | 155 | 1 | 155 | 5.89e-50 | 177 |
| MS.gene51177.t1 | AT1G70940 | 50.299 | 167 | 78 | 1 | 198 | 359 | 472 | 638 | 6.28e-49 | 174 |
| MS.gene51177.t1 | AT1G23080 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 1.06e-49 | 174 |
| MS.gene51177.t1 | AT1G23080 | 37.634 | 93 | 51 | 2 | 175 | 262 | 426 | 516 | 2.19e-11 | 65.5 |
| MS.gene51177.t1 | AT1G23080 | 46.842 | 190 | 94 | 2 | 175 | 359 | 426 | 613 | 1.34e-49 | 176 |
| MS.gene51177.t1 | AT1G23080 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.22e-49 | 175 |
| MS.gene51177.t1 | AT1G23080 | 46.842 | 190 | 94 | 2 | 175 | 359 | 426 | 613 | 1.34e-49 | 176 |
| MS.gene51177.t1 | AT1G23080 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.22e-49 | 175 |
| MS.gene51177.t1 | AT1G23080 | 46.842 | 190 | 94 | 2 | 175 | 359 | 430 | 617 | 1.34e-49 | 176 |
| MS.gene51177.t1 | AT1G23080 | 52.903 | 155 | 73 | 0 | 1 | 155 | 1 | 155 | 3.26e-49 | 175 |
| MS.gene51177.t1 | AT1G77110 | 46.237 | 186 | 93 | 2 | 179 | 359 | 385 | 568 | 7.10e-48 | 171 |
| MS.gene51177.t1 | AT1G77110 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 4.14e-40 | 149 |
| MS.gene51177.t1 | AT1G77110 | 47.097 | 155 | 82 | 0 | 1 | 155 | 1 | 155 | 3.79e-40 | 149 |
| MS.gene51177.t1 | AT1G77110 | 43.976 | 166 | 86 | 2 | 179 | 339 | 385 | 548 | 1.23e-38 | 145 |
Find 81 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACACAACCATAGGAATT+TGG | 0.178760 | 7.3:+27546350 | None:intergenic |
| ATATACATGCAGGTGGAATT+TGG | 0.222555 | 7.3:-27546172 | MS.gene51177:intron |
| AATAAGAAGTTCATCTTAAA+AGG | 0.233267 | 7.3:+27546806 | None:intergenic |
| AAGATGAACTTCTTATTTAT+AGG | 0.235002 | 7.3:-27546800 | MS.gene51177:CDS |
| CATGGGCTTTCATATCTAAT+AGG | 0.262952 | 7.3:-27546319 | MS.gene51177:intron |
| TTTACGAATTGCCATAATTC+AGG | 0.275399 | 7.3:-27545804 | MS.gene51177:intron |
| TGTCGCGGTGATTGCCCTTT+GGG | 0.292221 | 7.3:-27546750 | MS.gene51177:CDS |
| ACAATAAATAACCTGAATTA+TGG | 0.292859 | 7.3:+27545793 | None:intergenic |
| GGGCACTGCCATGTTTAGTA+TGG | 0.309953 | 7.3:-27546097 | MS.gene51177:CDS |
| CGGTTGTTCAAGCTATTATA+TGG | 0.310821 | 7.3:-27546586 | MS.gene51177:CDS |
| CTAACAAATTCTCTTGTTGT+TGG | 0.319301 | 7.3:-27546668 | MS.gene51177:CDS |
| AATTCCTATGGTTGTGTCAT+TGG | 0.321480 | 7.3:-27546347 | MS.gene51177:CDS |
| GTAGCAAAGTAAGTTATTCT+TGG | 0.331589 | 7.3:-27546718 | MS.gene51177:CDS |
| CACTTTGCTTCTATTTGTGT+TGG | 0.343196 | 7.3:-27546561 | MS.gene51177:CDS |
| TGACACAACCATAGGAATTT+GGG | 0.351513 | 7.3:+27546351 | None:intergenic |
| GTTGTGTCATTGGCATTTCA+TGG | 0.356642 | 7.3:-27546337 | MS.gene51177:CDS |
| GGACCAAGTCTGACTGTATT+TGG | 0.359187 | 7.3:-27545902 | MS.gene51177:CDS |
| GGTCTCGACAGGGTGATCTT+TGG | 0.371878 | 7.3:-27545120 | MS.gene51177:intron |
| TTGTCGCGGTGATTGCCCTT+TGG | 0.372998 | 7.3:-27546751 | MS.gene51177:CDS |
| GCCACACACGCTTCATCAAT+TGG | 0.381628 | 7.3:+27546390 | None:intergenic |
| GAATTTGGAATTGCCAAGTA+TGG | 0.381720 | 7.3:-27546157 | MS.gene51177:CDS |
| AGTAGCCTACTACGCAATAT+TGG | 0.386249 | 7.3:-27545073 | MS.gene51177:CDS |
| GCTATTAGTGCCTTCATTGT+TGG | 0.394401 | 7.3:-27545842 | MS.gene51177:CDS |
| GTGTTGGAGTTTAGAAGAAC+GGG | 0.402783 | 7.3:-27546545 | MS.gene51177:CDS |
| AAGTCTGACTGTATTTGGTT+TGG | 0.414306 | 7.3:-27545897 | MS.gene51177:CDS |
| AAACTCCAATATTGCGTAGT+AGG | 0.415626 | 7.3:+27545068 | None:intergenic |
| GGATCTTGTGGTTCAAGCTT+CGG | 0.440986 | 7.3:-27546606 | MS.gene51177:CDS |
| CGCTTCATCAATTGGAAGAA+AGG | 0.444864 | 7.3:+27546398 | None:intergenic |
| ATCATGTCAAAGGCTGGAAC+GGG | 0.450270 | 7.3:-27546117 | MS.gene51177:CDS |
| TTACTAATGCTACTAGCCTT+CGG | 0.463777 | 7.3:+27546494 | None:intergenic |
| GAAACCTATGTATGGACCTA+TGG | 0.475019 | 7.3:-27546633 | MS.gene51177:CDS |
| CCAATGGTGAAACCTATGTA+TGG | 0.489658 | 7.3:-27546641 | MS.gene51177:CDS |
| GTTTAGAAGAACGGGAATAG+AGG | 0.490862 | 7.3:-27546537 | MS.gene51177:CDS |
| ATAGCAAACCCAAATTCCTA+TGG | 0.491172 | 7.3:-27546359 | MS.gene51177:CDS |
| ATGAAGGATGTGATGGATTG+TGG | 0.492604 | 7.3:+27545315 | None:intergenic |
| TTTGCACTAATATTAGGCTA+TGG | 0.493851 | 7.3:-27546941 | MS.gene51177:CDS |
| TGTGTTGGAGTTTAGAAGAA+CGG | 0.506228 | 7.3:-27546546 | MS.gene51177:CDS |
| GGAATTGCCAAGTATGGTAG+AGG | 0.516261 | 7.3:-27546151 | MS.gene51177:CDS |
| TTGTGTCATTGGCATTTCAT+GGG | 0.516530 | 7.3:-27546336 | MS.gene51177:CDS |
| ATAGACCCCTCTACCATACT+TGG | 0.519190 | 7.3:+27546144 | None:intergenic |
| GCTACTACACTTAGCCCAAA+GGG | 0.523271 | 7.3:+27546736 | None:intergenic |
| ATATTGATCATGTCAAAGGC+TGG | 0.526511 | 7.3:-27546123 | MS.gene51177:CDS |
| ACCTATGGGTGTGGATCTTG+TGG | 0.536177 | 7.3:-27546618 | MS.gene51177:CDS |
| GATCATGTCAAAGGCTGGAA+CGG | 0.541123 | 7.3:-27546118 | MS.gene51177:CDS |
| GCACTAATAGCCATTGCTGC+TGG | 0.549589 | 7.3:+27545854 | None:intergenic |
| CCATACATAGGTTTCACCAT+TGG | 0.550223 | 7.3:+27546641 | None:intergenic |
| CATTGCTGGACCAGCAGCAA+TGG | 0.551223 | 7.3:-27545864 | MS.gene51177:CDS |
| GCCTTCATTGTTGGATTGCG+TGG | 0.554074 | 7.3:-27545833 | MS.gene51177:CDS |
| TATTAGGCTATGGTTCTGTA+AGG | 0.555934 | 7.3:-27546931 | MS.gene51177:CDS |
| ACCACGCAATCCAACAATGA+AGG | 0.564698 | 7.3:+27545832 | None:intergenic |
| GTCTATATTGATCATGTCAA+AGG | 0.570735 | 7.3:-27546127 | MS.gene51177:CDS |
| GCGTAGTAGGCTACTAAGAT+CGG | 0.570919 | 7.3:+27545081 | None:intergenic |
| TTTAGAAGAACGGGAATAGA+GGG | 0.575235 | 7.3:-27546536 | MS.gene51177:CDS |
| TGCTACTACACTTAGCCCAA+AGG | 0.578291 | 7.3:+27546735 | None:intergenic |
| GCTATGGTTCTGTAAGGTGG+TGG | 0.583525 | 7.3:-27546925 | MS.gene51177:CDS |
| AGGTGAAGAAAGTAAAGATG+TGG | 0.584615 | 7.3:-27546459 | MS.gene51177:CDS |
| GAATTGCCAAGTATGGTAGA+GGG | 0.589216 | 7.3:-27546150 | MS.gene51177:CDS |
| GGCACTGCCATGTTTAGTAT+GGG | 0.590296 | 7.3:-27546096 | MS.gene51177:intron |
| GTGAACTCGAAGGCGAAGAG+TGG | 0.590300 | 7.3:+27546842 | None:intergenic |
| TCCAATTGATGAAGCGTGTG+TGG | 0.597137 | 7.3:-27546391 | MS.gene51177:CDS |
| CAAGAGAAAGTGATTTCGTG+TGG | 0.600700 | 7.3:-27545923 | MS.gene51177:CDS |
| AATATTAGTGCAAAATAGAG+TGG | 0.603576 | 7.3:+27546950 | None:intergenic |
| TCTTGTTGTTGGAATACCAA+TGG | 0.606269 | 7.3:-27546657 | MS.gene51177:CDS |
| AAACCTATGTATGGACCTAT+GGG | 0.609473 | 7.3:-27546632 | MS.gene51177:CDS |
| ATTAGTAATGTGACATGTGA+AGG | 0.611957 | 7.3:-27546479 | MS.gene51177:CDS |
| TAGGCTATGGTTCTGTAAGG+TGG | 0.613388 | 7.3:-27546928 | MS.gene51177:CDS |
| GTACAAAGTTATTGTAGCAG+TGG | 0.621495 | 7.3:-27546975 | MS.gene51177:CDS |
| AAACCAAATACAGTCAGACT+TGG | 0.623723 | 7.3:+27545899 | None:intergenic |
| TATGTATGGACCTATGGGTG+TGG | 0.625106 | 7.3:-27546627 | MS.gene51177:CDS |
| ATCAAAGTTAATCATTGTCG+CGG | 0.626681 | 7.3:-27546765 | MS.gene51177:CDS |
| TATAAGCACTTTGAAACCGA+AGG | 0.636999 | 7.3:-27546510 | MS.gene51177:CDS |
| ACCACAAGATCCACACCCAT+AGG | 0.638060 | 7.3:+27546617 | None:intergenic |
| AAGCTTACCCATACTAAACA+TGG | 0.644081 | 7.3:+27546089 | None:intergenic |
| GAACTTCTTATTTATAGGCG+CGG | 0.645236 | 7.3:-27546795 | MS.gene51177:CDS |
| AATGCCAATGACACAACCAT+AGG | 0.648775 | 7.3:+27546343 | None:intergenic |
| TTACGCAGTGCTAAGAACCT+CGG | 0.657922 | 7.3:+27545266 | None:intergenic |
| ACACCCATAGGTCCATACAT+AGG | 0.661152 | 7.3:+27546629 | None:intergenic |
| AGAATACGAACTGCATGCCG+AGG | 0.669759 | 7.3:-27545283 | MS.gene51177:CDS |
| AATTGCCAAGTATGGTAGAG+GGG | 0.692420 | 7.3:-27546149 | MS.gene51177:CDS |
| GATGTGCGCGGTGAACTCGA+AGG | 0.703238 | 7.3:+27546832 | None:intergenic |
| CTTAAAAGGATCGATGTGCG+CGG | 0.711568 | 7.3:+27546820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTAATTTTCAAATGTT+TGG | - | chr7.3:27546913-27546932 | MS.gene51177:CDS | 10.0% |
| !!! | TATTTTTTTGTGTTTTTAAA+AGG | - | chr7.3:27546652-27546671 | MS.gene51177:CDS | 10.0% |
| !! | ATTATTATTAAACATGGTTA+GGG | - | chr7.3:27546031-27546050 | MS.gene51177:intron | 15.0% |
| !! | CATAAAAATATAATTAGATG+AGG | + | chr7.3:27546696-27546715 | None:intergenic | 15.0% |
| !! | TATTATTATTAAACATGGTT+AGG | - | chr7.3:27546030-27546049 | MS.gene51177:intron | 15.0% |
| !! | AATAAGAAGTTCATCTTAAA+AGG | + | chr7.3:27545251-27545270 | None:intergenic | 20.0% |
| !! | ACAATAAATAACCTGAATTA+TGG | + | chr7.3:27546264-27546283 | None:intergenic | 20.0% |
| !!! | AAGATGAACTTCTTATTTAT+AGG | - | chr7.3:27545254-27545273 | MS.gene51177:intron | 20.0% |
| ! | AATATTAGTGCAAAATAGAG+TGG | + | chr7.3:27545107-27545126 | None:intergenic | 25.0% |
| ! | CTAAAATATTAGCTAACGAA+CGG | + | chr7.3:27546572-27546591 | None:intergenic | 25.0% |
| ! | GTATTCTTTAGCAAAAATGA+AGG | + | chr7.3:27546758-27546777 | None:intergenic | 25.0% |
| ! | TAAAATATTAGCTAACGAAC+GGG | + | chr7.3:27546571-27546590 | None:intergenic | 25.0% |
| ! | TTGTCTTTACTAGAAAAAAG+AGG | + | chr7.3:27546369-27546388 | None:intergenic | 25.0% |
| !! | CTCTATTTTGCACTAATATT+AGG | - | chr7.3:27545107-27545126 | MS.gene51177:CDS | 25.0% |
| !! | GATTTTGTCTATGCTATAAA+TGG | + | chr7.3:27546347-27546366 | None:intergenic | 25.0% |
| !! | TTTGAAAGTTATCTCTGAAA+CGG | + | chr7.3:27546629-27546648 | None:intergenic | 25.0% |
| !!! | ATAATTTTTGGCAATGGAAA+TGG | + | chr7.3:27546419-27546438 | None:intergenic | 25.0% |
| !!! | ATTTTTTTACTCCCACAAAT+GGG | - | chr7.3:27546599-27546618 | MS.gene51177:CDS | 25.0% |
| !!! | TATTTTTTTACTCCCACAAA+TGG | - | chr7.3:27546598-27546617 | MS.gene51177:CDS | 25.0% |
| !!! | TCACAAATAATTTTTGGCAA+TGG | + | chr7.3:27546425-27546444 | None:intergenic | 25.0% |
| !!! | TTTGTGTTTTTAAAAGGCTT+CGG | - | chr7.3:27546658-27546677 | MS.gene51177:CDS | 25.0% |
| ATATGTGATTAAGTGTGATG+TGG | - | chr7.3:27545849-27545868 | MS.gene51177:CDS | 30.0% | |
| ATCAAAGTTAATCATTGTCG+CGG | - | chr7.3:27545289-27545308 | MS.gene51177:CDS | 30.0% | |
| ATTAGTAATGTGACATGTGA+AGG | - | chr7.3:27545575-27545594 | MS.gene51177:intron | 30.0% | |
| GTAGCAAAGTAAGTTATTCT+TGG | - | chr7.3:27545336-27545355 | MS.gene51177:intron | 30.0% | |
| GTCTATATTGATCATGTCAA+AGG | - | chr7.3:27545927-27545946 | MS.gene51177:CDS | 30.0% | |
| GTTGAATCATATGAGTGATT+TGG | + | chr7.3:27546488-27546507 | None:intergenic | 30.0% | |
| TCTCACATATATATACATGC+AGG | - | chr7.3:27545872-27545891 | MS.gene51177:CDS | 30.0% | |
| TTTACGAATTGCCATAATTC+AGG | - | chr7.3:27546250-27546269 | MS.gene51177:intron | 30.0% | |
| TTTGCACTAATATTAGGCTA+TGG | - | chr7.3:27545113-27545132 | MS.gene51177:intron | 30.0% | |
| ! | AATCATATGAGTGATTTGGA+TGG | + | chr7.3:27546484-27546503 | None:intergenic | 30.0% |
| ! | CGAGCTTCACAAATAATTTT+TGG | + | chr7.3:27546431-27546450 | None:intergenic | 30.0% |
| ! | CGTTCGTTAGCTAATATTTT+AGG | - | chr7.3:27546570-27546589 | MS.gene51177:CDS | 30.0% |
| ! | CTAACAAATTCTCTTGTTGT+TGG | - | chr7.3:27545386-27545405 | MS.gene51177:intron | 30.0% |
| ! | TATATGTGATGTGTTGATAC+AGG | - | chr7.3:27546092-27546111 | MS.gene51177:intron | 30.0% |
| ! | TGTTGATACAGGTATTTTCA+TGG | - | chr7.3:27546103-27546122 | MS.gene51177:CDS | 30.0% |
| ! | TTTTGGCAAAAACAAAAGAG+AGG | + | chr7.3:27546395-27546414 | None:intergenic | 30.0% |
| !! | CGTTAGCTAATATTTTAGGA+TGG | - | chr7.3:27546574-27546593 | MS.gene51177:CDS | 30.0% |
| !!! | TTGGTTTTAAAGTTCATTGC+TGG | - | chr7.3:27546176-27546195 | MS.gene51177:intron | 30.0% |
| !!! | TTTTTATGTTTATTCGGTGC+AGG | - | chr7.3:27546708-27546727 | MS.gene51177:CDS | 30.0% |
| AAACCAAATACAGTCAGACT+TGG | + | chr7.3:27546158-27546177 | None:intergenic | 35.0% | |
| AAACCTATGTATGGACCTAT+GGG | - | chr7.3:27545422-27545441 | MS.gene51177:intron | 35.0% | |
| AAACTCCAATATTGCGTAGT+AGG | + | chr7.3:27546989-27547008 | None:intergenic | 35.0% | |
| AAACTCCTAGCATCACTAAA+TGG | - | chr7.3:27546544-27546563 | MS.gene51177:CDS | 35.0% | |
| AAGCTTACCCATACTAAACA+TGG | + | chr7.3:27545968-27545987 | None:intergenic | 35.0% | |
| AAGTCTGACTGTATTTGGTT+TGG | - | chr7.3:27546157-27546176 | MS.gene51177:CDS | 35.0% | |
| AATTCCTATGGTTGTGTCAT+TGG | - | chr7.3:27545707-27545726 | MS.gene51177:intron | 35.0% | |
| AGCAAAAATGAAGGATGTGA+TGG | + | chr7.3:27546749-27546768 | None:intergenic | 35.0% | |
| AGGTGAAGAAAGTAAAGATG+TGG | - | chr7.3:27545595-27545614 | MS.gene51177:intron | 35.0% | |
| ATAGCAAACCCAAATTCCTA+TGG | - | chr7.3:27545695-27545714 | MS.gene51177:intron | 35.0% | |
| ATATACATGCAGGTGGAATT+TGG | - | chr7.3:27545882-27545901 | MS.gene51177:CDS | 35.0% | |
| ATATTGATCATGTCAAAGGC+TGG | - | chr7.3:27545931-27545950 | MS.gene51177:CDS | 35.0% | |
| ATGACACAACCATAGGAATT+TGG | + | chr7.3:27545707-27545726 | None:intergenic | 35.0% | |
| CACATATATATACATGCAGG+TGG | - | chr7.3:27545875-27545894 | MS.gene51177:CDS | 35.0% | |
| CACTTTGCTTCTATTTGTGT+TGG | - | chr7.3:27545493-27545512 | MS.gene51177:intron | 35.0% | |
| CATGGGCTTTCATATCTAAT+AGG | - | chr7.3:27545735-27545754 | MS.gene51177:intron | 35.0% | |
| CGGTTGTTCAAGCTATTATA+TGG | - | chr7.3:27545468-27545487 | MS.gene51177:intron | 35.0% | |
| GTACAAAGTTATTGTAGCAG+TGG | - | chr7.3:27545079-27545098 | MS.gene51177:CDS | 35.0% | |
| TGACACAACCATAGGAATTT+GGG | + | chr7.3:27545706-27545725 | None:intergenic | 35.0% | |
| TGTGTTGGAGTTTAGAAGAA+CGG | - | chr7.3:27545508-27545527 | MS.gene51177:intron | 35.0% | |
| TTTAGAAGAACGGGAATAGA+GGG | - | chr7.3:27545518-27545537 | MS.gene51177:intron | 35.0% | |
| ! | GAACTTCTTATTTATAGGCG+CGG | - | chr7.3:27545259-27545278 | MS.gene51177:intron | 35.0% |
| ! | GAATTTGGAATTGCCAAGTA+TGG | - | chr7.3:27545897-27545916 | MS.gene51177:CDS | 35.0% |
| ! | TATGAGTGATTTGGATGGTA+CGG | + | chr7.3:27546479-27546498 | None:intergenic | 35.0% |
| ! | TATTAGGCTATGGTTCTGTA+AGG | - | chr7.3:27545123-27545142 | MS.gene51177:intron | 35.0% |
| ! | TTGGCAATGGAAATGGTTTT+TGG | + | chr7.3:27546412-27546431 | None:intergenic | 35.0% |
| ! | TTGTGTCATTGGCATTTCAT+GGG | - | chr7.3:27545718-27545737 | MS.gene51177:intron | 35.0% |
| !! | TATAAGCACTTTGAAACCGA+AGG | - | chr7.3:27545544-27545563 | MS.gene51177:intron | 35.0% |
| !! | TCTTGTTGTTGGAATACCAA+TGG | - | chr7.3:27545397-27545416 | MS.gene51177:intron | 35.0% |
| !! | TTACTAATGCTACTAGCCTT+CGG | + | chr7.3:27545563-27545582 | None:intergenic | 35.0% |
| AATGCCAATGACACAACCAT+AGG | + | chr7.3:27545714-27545733 | None:intergenic | 40.0% | |
| AATTGCCAAGTATGGTAGAG+GGG | - | chr7.3:27545905-27545924 | MS.gene51177:CDS | 40.0% | |
| AGTAGCCTACTACGCAATAT+TGG | - | chr7.3:27546981-27547000 | MS.gene51177:CDS | 40.0% | |
| CAAGAGAAAGTGATTTCGTG+TGG | - | chr7.3:27546131-27546150 | MS.gene51177:CDS | 40.0% | |
| CCAATGGTGAAACCTATGTA+TGG | - | chr7.3:27545413-27545432 | MS.gene51177:intron | 40.0% | |
| CCATACATAGGTTTCACCAT+TGG | + | chr7.3:27545416-27545435 | None:intergenic | 40.0% | |
| CGCTTCATCAATTGGAAGAA+AGG | + | chr7.3:27545659-27545678 | None:intergenic | 40.0% | |
| GAAACCTATGTATGGACCTA+TGG | - | chr7.3:27545421-27545440 | MS.gene51177:intron | 40.0% | |
| GAATTGCCAAGTATGGTAGA+GGG | - | chr7.3:27545904-27545923 | MS.gene51177:CDS | 40.0% | |
| GCTATTAGTGCCTTCATTGT+TGG | - | chr7.3:27546212-27546231 | MS.gene51177:intron | 40.0% | |
| GTGTTGGAGTTTAGAAGAAC+GGG | - | chr7.3:27545509-27545528 | MS.gene51177:intron | 40.0% | |
| GTTTAGAAGAACGGGAATAG+AGG | - | chr7.3:27545517-27545536 | MS.gene51177:intron | 40.0% | |
| TCAAATGTTTGGTCTCGACA+GGG | - | chr7.3:27546924-27546943 | MS.gene51177:CDS | 40.0% | |
| TTCAAATGTTTGGTCTCGAC+AGG | - | chr7.3:27546923-27546942 | MS.gene51177:CDS | 40.0% | |
| ! | GTTGTGTCATTGGCATTTCA+TGG | - | chr7.3:27545717-27545736 | MS.gene51177:intron | 40.0% |
| !! | ATGAAGGATGTGATGGATTG+TGG | + | chr7.3:27546742-27546761 | None:intergenic | 40.0% |
| ACACCCATAGGTCCATACAT+AGG | + | chr7.3:27545428-27545447 | None:intergenic | 45.0% | |
| ACCACGCAATCCAACAATGA+AGG | + | chr7.3:27546225-27546244 | None:intergenic | 45.0% | |
| ATAGACCCCTCTACCATACT+TGG | + | chr7.3:27545913-27545932 | None:intergenic | 45.0% | |
| ATCATGTCAAAGGCTGGAAC+GGG | - | chr7.3:27545937-27545956 | MS.gene51177:CDS | 45.0% | |
| CTTAAAAGGATCGATGTGCG+CGG | + | chr7.3:27545237-27545256 | None:intergenic | 45.0% | |
| GAAACGGTTTGCCCATTTGT+GGG | + | chr7.3:27546613-27546632 | None:intergenic | 45.0% | |
| GATCATGTCAAAGGCTGGAA+CGG | - | chr7.3:27545936-27545955 | MS.gene51177:CDS | 45.0% | |
| GCGTAGTAGGCTACTAAGAT+CGG | + | chr7.3:27546976-27546995 | None:intergenic | 45.0% | |
| GCTACTACACTTAGCCCAAA+GGG | + | chr7.3:27545321-27545340 | None:intergenic | 45.0% | |
| GGAATTGCCAAGTATGGTAG+AGG | - | chr7.3:27545903-27545922 | MS.gene51177:CDS | 45.0% | |
| GGACCAAGTCTGACTGTATT+TGG | - | chr7.3:27546152-27546171 | MS.gene51177:CDS | 45.0% | |
| GGATCTTGTGGTTCAAGCTT+CGG | - | chr7.3:27545448-27545467 | MS.gene51177:intron | 45.0% | |
| GGCACTGCCATGTTTAGTAT+GGG | - | chr7.3:27545958-27545977 | MS.gene51177:intron | 45.0% | |
| TATGTATGGACCTATGGGTG+TGG | - | chr7.3:27545427-27545446 | MS.gene51177:intron | 45.0% | |
| TCCAATTGATGAAGCGTGTG+TGG | - | chr7.3:27545663-27545682 | MS.gene51177:intron | 45.0% | |
| TGAAACGGTTTGCCCATTTG+TGG | + | chr7.3:27546614-27546633 | None:intergenic | 45.0% | |
| TGCTACTACACTTAGCCCAA+AGG | + | chr7.3:27545322-27545341 | None:intergenic | 45.0% | |
| TTACGCAGTGCTAAGAACCT+CGG | + | chr7.3:27546791-27546810 | None:intergenic | 45.0% | |
| ! | TAGGCTATGGTTCTGTAAGG+TGG | - | chr7.3:27545126-27545145 | MS.gene51177:intron | 45.0% |
| !! | AAAAAAAAAAAATATCTAAT+AGG | - | chr7.3:27545769-27545788 | MS.gene51177:intron | 5.0% |
| !! | ATTATTATTATTATTAAACA+TGG | - | chr7.3:27546025-27546044 | MS.gene51177:intron | 5.0% |
| !!! | ATTATATTTTTATGTTTATT+CGG | - | chr7.3:27546702-27546721 | MS.gene51177:CDS | 5.0% |
| ACCACAAGATCCACACCCAT+AGG | + | chr7.3:27545440-27545459 | None:intergenic | 50.0% | |
| ACCTATGGGTGTGGATCTTG+TGG | - | chr7.3:27545436-27545455 | MS.gene51177:intron | 50.0% | |
| AGAATACGAACTGCATGCCG+AGG | - | chr7.3:27546771-27546790 | MS.gene51177:CDS | 50.0% | |
| CGGGTCCATTTAGTGATGCT+AGG | + | chr7.3:27546552-27546571 | None:intergenic | 50.0% | |
| GCACTAATAGCCATTGCTGC+TGG | + | chr7.3:27546203-27546222 | None:intergenic | 50.0% | |
| GCCACACACGCTTCATCAAT+TGG | + | chr7.3:27545667-27545686 | None:intergenic | 50.0% | |
| GCCTTCATTGTTGGATTGCG+TGG | - | chr7.3:27546221-27546240 | MS.gene51177:intron | 50.0% | |
| ! | GCTATGGTTCTGTAAGGTGG+TGG | - | chr7.3:27545129-27545148 | MS.gene51177:intron | 50.0% |
| ! | GGGCACTGCCATGTTTAGTA+TGG | - | chr7.3:27545957-27545976 | MS.gene51177:intron | 50.0% |
| CATTGCTGGACCAGCAGCAA+TGG | - | chr7.3:27546190-27546209 | MS.gene51177:intron | 55.0% | |
| GGTCTCGACAGGGTGATCTT+TGG | - | chr7.3:27546934-27546953 | MS.gene51177:CDS | 55.0% | |
| GTGAACTCGAAGGCGAAGAG+TGG | + | chr7.3:27545215-27545234 | None:intergenic | 55.0% | |
| TGTCGCGGTGATTGCCCTTT+GGG | - | chr7.3:27545304-27545323 | MS.gene51177:CDS | 55.0% | |
| TTGTCGCGGTGATTGCCCTT+TGG | - | chr7.3:27545303-27545322 | MS.gene51177:CDS | 55.0% | |
| GATGTGCGCGGTGAACTCGA+AGG | + | chr7.3:27545225-27545244 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 27545059 | 27547017 | 27545059 | ID=MS.gene51177 |
| chr7.3 | mRNA | 27545059 | 27547017 | 27545059 | ID=MS.gene51177.t1;Parent=MS.gene51177 |
| chr7.3 | exon | 27546320 | 27547017 | 27546320 | ID=MS.gene51177.t1.exon1;Parent=MS.gene51177.t1 |
| chr7.3 | CDS | 27546320 | 27547017 | 27546320 | ID=cds.MS.gene51177.t1;Parent=MS.gene51177.t1 |
| chr7.3 | exon | 27546097 | 27546182 | 27546097 | ID=MS.gene51177.t1.exon2;Parent=MS.gene51177.t1 |
| chr7.3 | CDS | 27546097 | 27546182 | 27546097 | ID=cds.MS.gene51177.t1;Parent=MS.gene51177.t1 |
| chr7.3 | exon | 27545805 | 27545962 | 27545805 | ID=MS.gene51177.t1.exon3;Parent=MS.gene51177.t1 |
| chr7.3 | CDS | 27545805 | 27545962 | 27545805 | ID=cds.MS.gene51177.t1;Parent=MS.gene51177.t1 |
| chr7.3 | exon | 27545270 | 27545346 | 27545270 | ID=MS.gene51177.t1.exon4;Parent=MS.gene51177.t1 |
| chr7.3 | CDS | 27545270 | 27545346 | 27545270 | ID=cds.MS.gene51177.t1;Parent=MS.gene51177.t1 |
| chr7.3 | exon | 27545059 | 27545131 | 27545059 | ID=MS.gene51177.t1.exon5;Parent=MS.gene51177.t1 |
| chr7.3 | CDS | 27545059 | 27545131 | 27545059 | ID=cds.MS.gene51177.t1;Parent=MS.gene51177.t1 |
| Gene Sequence |
| Protein sequence |
