AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051509


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051509.t1 MTR_1g013450 95.268 317 14 1 1 317 1 316 0.0 629
MS.gene051509.t1 MTR_3g105710 54.769 325 104 8 1 317 1 290 7.30e-102 301
MS.gene051509.t1 MTR_4g128930 46.089 358 145 7 4 316 20 374 6.21e-94 283
MS.gene051509.t1 MTR_7g018170 62.500 88 33 0 4 91 24 111 7.14e-35 130
MS.gene051509.t1 MTR_7g018170 69.014 71 14 1 254 316 325 395 4.36e-23 98.6
MS.gene051509.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 1.42e-22 95.1
MS.gene051509.t1 MTR_1g023260 46.392 97 42 1 6 92 5 101 2.93e-22 92.4
MS.gene051509.t1 MTR_5g069480 37.692 130 76 2 5 131 4 131 6.83e-21 92.8
MS.gene051509.t1 MTR_5g069480 32.749 171 105 3 5 172 4 167 6.90e-21 91.3
MS.gene051509.t1 MTR_5g021580 44.565 92 41 2 5 88 4 93 4.28e-19 83.6
MS.gene051509.t1 MTR_5g021580 44.211 95 43 2 5 91 4 96 4.59e-19 84.0
MS.gene051509.t1 MTR_4g071200 43.299 97 45 1 6 92 5 101 6.65e-19 84.3
MS.gene051509.t1 MTR_2g073370 41.667 96 47 1 6 92 5 100 3.97e-18 83.2
MS.gene051509.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 5.81e-18 82.0
MS.gene051509.t1 MTR_4g067320 42.391 92 44 1 6 88 5 96 6.28e-18 81.6
MS.gene051509.t1 MTR_3g082630 37.500 104 64 1 5 108 4 106 6.45e-18 84.0
MS.gene051509.t1 MTR_3g117320 41.237 97 47 1 6 92 5 101 2.01e-17 80.1
MS.gene051509.t1 MTR_7g108150 39.326 89 53 1 6 94 20 107 8.06e-17 80.5
MS.gene051509.t1 MTR_3g113070 37.864 103 53 1 6 97 5 107 2.59e-16 77.0
MS.gene051509.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 8.66e-16 75.9
MS.gene051509.t1 MTR_2g099010 40.217 92 46 1 6 88 5 96 8.70e-16 75.9
MS.gene051509.t1 MTR_7g083540 38.710 93 52 1 6 98 5 92 2.00e-14 73.6
MS.gene051509.t1 MTR_3g034680 60.000 45 18 0 50 94 11 55 7.48e-14 67.0
MS.gene051509.t1 MTR_2g088900 39.560 91 52 1 5 95 100 187 3.90e-13 70.1
MS.gene051509.t1 MTR_1g109350 36.486 74 47 0 4 77 3 76 1.78e-12 67.4
MS.gene051509.t1 MTR_1g110870 47.561 82 36 2 222 301 351 427 2.04e-12 67.8
MS.gene051509.t1 MTR_8g104190 70.455 44 13 0 256 299 358 401 2.96e-12 67.4
MS.gene051509.t1 MTR_5g072780 47.826 69 33 1 233 298 148 216 7.20e-12 64.3
MS.gene051509.t1 MTR_2g096080 42.188 64 37 0 245 308 144 207 5.95e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051509.t1 AT5G24930 54.000 350 104 14 1 302 1 341 4.63e-97 291
MS.gene051509.t1 AT2G24790 53.074 309 104 11 2 304 4 277 3.73e-94 281
MS.gene051509.t1 AT3G02380 42.899 338 163 7 4 316 14 346 6.94e-82 252
MS.gene051509.t1 AT5G57660 43.103 348 154 10 2 316 18 354 5.69e-73 229
MS.gene051509.t1 AT5G15850 40.230 348 166 9 6 316 12 354 2.35e-69 220
MS.gene051509.t1 AT5G15840 38.843 363 160 13 6 316 20 372 7.19e-69 219
MS.gene051509.t1 AT2G24790 50.237 211 75 7 2 208 4 188 8.69e-58 186
MS.gene051509.t1 AT5G15840 44.681 141 54 3 6 126 20 156 1.73e-34 127
MS.gene051509.t1 AT2G21320 44.211 95 43 2 5 91 4 96 4.87e-19 83.2
MS.gene051509.t1 AT4G38960 43.158 95 44 2 5 91 4 96 8.74e-19 82.8
MS.gene051509.t1 AT4G38960 43.158 95 44 2 5 91 4 96 8.74e-19 82.8
MS.gene051509.t1 AT1G78600 42.708 96 46 1 6 92 5 100 1.61e-18 84.7
MS.gene051509.t1 AT1G78600 42.708 96 46 1 6 92 5 100 2.24e-18 84.3
MS.gene051509.t1 AT1G75540 40.404 99 47 1 6 92 5 103 1.15e-17 82.8
MS.gene051509.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.61e-17 81.6
MS.gene051509.t1 AT2G47890 40.659 91 52 1 4 94 11 99 1.78e-17 82.0
MS.gene051509.t1 AT2G47890 56.000 50 22 0 251 300 282 331 2.19e-11 64.3
MS.gene051509.t1 AT2G47890 40.659 91 52 1 4 94 11 99 2.68e-17 80.1
MS.gene051509.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.74e-17 81.6
MS.gene051509.t1 AT2G33500 40.449 89 53 0 6 94 12 100 4.99e-17 81.6
MS.gene051509.t1 AT1G06040 43.478 92 43 1 6 88 5 96 1.19e-16 78.6
MS.gene051509.t1 AT1G06040 43.478 92 43 1 6 88 5 96 1.78e-16 76.3
MS.gene051509.t1 AT5G48250 42.667 75 43 0 5 79 4 78 1.91e-16 79.7
MS.gene051509.t1 AT1G28050 40.449 89 53 0 6 94 9 97 1.98e-16 79.7
MS.gene051509.t1 AT2G31380 30.481 187 97 4 6 164 5 186 1.77e-15 75.1
MS.gene051509.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.20e-15 76.3
MS.gene051509.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.20e-15 76.3
MS.gene051509.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.20e-15 76.3
MS.gene051509.t1 AT3G07650 42.466 73 42 0 5 77 4 76 2.20e-15 76.3
MS.gene051509.t1 AT4G15250 40.476 84 50 0 6 89 5 88 3.12e-15 75.5
MS.gene051509.t1 AT4G39070 38.776 98 50 1 5 92 4 101 2.14e-14 72.0
MS.gene051509.t1 AT1G68190 36.264 91 56 1 4 94 12 100 6.17e-14 72.0
MS.gene051509.t1 AT1G68190 36.264 91 56 1 4 94 12 100 6.17e-14 72.0
MS.gene051509.t1 AT1G68190 38.961 77 47 0 4 80 41 117 7.16e-14 72.0
MS.gene051509.t1 AT1G49130 53.968 63 29 0 237 299 259 321 1.84e-13 70.5
MS.gene051509.t1 AT4G10240 36.275 102 46 2 6 92 5 102 2.00e-13 67.4
MS.gene051509.t1 AT1G49130 53.968 63 29 0 237 299 252 314 2.03e-13 70.1
MS.gene051509.t1 AT1G68520 66.667 48 16 0 256 303 357 404 6.93e-13 69.3
MS.gene051509.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.06e-13 68.9
MS.gene051509.t1 AT3G21880 36.364 88 46 1 6 83 9 96 7.06e-13 68.9
MS.gene051509.t1 AT3G21880 36.364 88 46 1 6 83 5 92 7.34e-13 68.9
MS.gene051509.t1 AT1G73870 68.085 47 15 0 255 301 344 390 1.79e-12 67.8
MS.gene051509.t1 AT1G25440 72.093 43 12 0 256 298 361 403 4.21e-12 67.0
MS.gene051509.t1 AT5G41380 52.000 50 24 0 252 301 211 260 9.31e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1.3:-7673459 None:intergenic
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1.3:-7673244 None:intergenic
GCGAACCTTCCTTTAATTCT+AGG 0.234127 1.3:-7674036 None:intergenic
GAAACTAGACCTAGAATTAA+AGG 0.239849 1.3:+7674027 MS.gene051509:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1.3:-7673443 None:intergenic
AATTGAGATCAGGGAATTTA+GGG 0.282604 1.3:-7673458 None:intergenic
GTGACGAAATCGTCAATTTC+GGG 0.319268 1.3:-7673498 None:intergenic
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1.3:-7673088 None:intergenic
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1.3:+7673415 MS.gene051509:CDS
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1.3:-7673450 None:intergenic
AGTGACGAAATCGTCAATTT+CGG 0.368521 1.3:-7673499 None:intergenic
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1.3:-7673559 None:intergenic
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1.3:+7673566 MS.gene051509:CDS
GGAAGCAGCTTCTGCTTCTT+CGG 0.381583 1.3:-7673412 None:intergenic
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1.3:-7673172 None:intergenic
GTTGTTGTTGTGGTGGTGGA+AGG 0.394821 1.3:-7673343 None:intergenic
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1.3:-7673187 None:intergenic
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1.3:-7673468 None:intergenic
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1.3:-7673100 None:intergenic
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1.3:-7673368 None:intergenic
AGCTTCTGCTTCTTCGGTGG+TGG 0.425885 1.3:-7673406 None:intergenic
GGCTGTTGTTGTTGTGGTGG+TGG 0.426525 1.3:-7673347 None:intergenic
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1.3:-7673558 None:intergenic
CCGTCTCCGTCGCCGTCGTT+TGG 0.429025 1.3:-7673876 None:intergenic
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1.3:-7673188 None:intergenic
AACTTCATACATAGTTCAAC+AGG 0.431616 1.3:-7674118 None:intergenic
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1.3:-7673467 None:intergenic
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1.3:-7673835 None:intergenic
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1.3:-7673306 None:intergenic
ATCGGAACCGCCACCGTCAT+CGG 0.447848 1.3:-7673901 None:intergenic
CCGGAGCTTGTTCACAGACT+TGG 0.464846 1.3:-7673212 None:intergenic
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1.3:+7673798 MS.gene051509:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1.3:-7673333 None:intergenic
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1.3:-7673919 None:intergenic
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1.3:-7673231 None:intergenic
GGCGGTTCCGATGACGGCGG+TGG 0.476197 1.3:+7673912 MS.gene051509:CDS
GACGGTGGCGGTTCCGATGA+CGG 0.482863 1.3:+7673906 MS.gene051509:CDS
TTAATTGCAGAGGATGAATA+CGG 0.494889 1.3:+7674084 MS.gene051509:CDS
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1.3:-7673433 None:intergenic
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1.3:-7673191 None:intergenic
GTAGTGTTCGTGTTCGTGTT+CGG 0.509358 1.3:-7673613 None:intergenic
GTTGTTGTGGTGGTGGAAGG+TGG 0.511007 1.3:-7673340 None:intergenic
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1.3:-7673320 None:intergenic
GTTGGCTGTTGTTGTTGTGG+TGG 0.517079 1.3:-7673350 None:intergenic
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1.3:+7673801 MS.gene051509:intron
CCAAGTCTGTGAACAAGCTC+CGG 0.534270 1.3:+7673212 MS.gene051509:CDS
AAATATGAATTTAATTGCAG+AGG 0.534945 1.3:+7674074 MS.gene051509:CDS
TTCGTGTTCGTGTTCGGTGG+TGG 0.536195 1.3:-7673607 None:intergenic
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1.3:+7673555 MS.gene051509:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1.3:+7673926 MS.gene051509:CDS
AAAGAGAAGCTAGGGTTTCG+AGG 0.545550 1.3:+7673935 MS.gene051509:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1.3:-7673305 None:intergenic
GTTGTTGGCTGTTGTTGTTG+TGG 0.546859 1.3:-7673353 None:intergenic
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1.3:-7673332 None:intergenic
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1.3:-7673164 None:intergenic
AGAGTGGATGTCATGATCAC+AGG 0.550527 1.3:-7673277 None:intergenic
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1.3:+7673805 MS.gene051509:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1.3:+7673540 MS.gene051509:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1.3:-7673565 None:intergenic
GACGGAGACGGCGCCGATGA+CGG 0.554357 1.3:+7673888 MS.gene051509:CDS
AGCAGCTTCTGCTTCTTCGG+TGG 0.557435 1.3:-7673409 None:intergenic
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1.3:+7673927 MS.gene051509:CDS
GACGGCGCCGATGACGGTGG+CGG 0.560155 1.3:+7673894 MS.gene051509:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1.3:+7673834 MS.gene051509:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1.3:-7673669 None:intergenic
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1.3:-7673184 None:intergenic
CCAAACGACGGCGACGGAGA+CGG 0.583977 1.3:+7673876 MS.gene051509:CDS
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1.3:-7673157 None:intergenic
CACCGGAACGACGCCATCTG+CGG 0.589463 1.3:-7673568 None:intergenic
TGGAATCACATGTGAGACAA+AGG 0.606070 1.3:-7673137 None:intergenic
CGGTTACCAAACGACGGCGA+CGG 0.608475 1.3:+7673870 MS.gene051509:CDS
GATACATAGAGCAGCTGCGT+CGG 0.618915 1.3:-7673253 None:intergenic
CTAGACCTAGAATTAAAGGA+AGG 0.629185 1.3:+7674031 MS.gene051509:CDS
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1.3:-7673119 None:intergenic
ACAACTCCAACCTCCATCGA+CGG 0.637687 1.3:-7673811 None:intergenic
GTGTTCGTGTTCGTGTTCGG+TGG 0.637730 1.3:-7673610 None:intergenic
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1.3:-7673293 None:intergenic
GGAGACGGCGCCGATGACGG+TGG 0.675670 1.3:+7673891 MS.gene051509:CDS
TCATACATAGTTCAACAGGA+AGG 0.676360 1.3:-7674114 None:intergenic
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1.3:+7673820 MS.gene051509:CDS
CAACGCTAAAACAGACACGC+CGG 0.702951 1.3:+7673524 MS.gene051509:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1.3:-7673317 None:intergenic
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1.3:-7673194 None:intergenic
AGACTTGGCAGAGTGTGACG+CGG 0.706454 1.3:-7673197 None:intergenic
TGACGAAATCGTCAATTTCG+GGG 0.717237 1.3:-7673497 None:intergenic
GTACTGCGGTTACCAAACGA+CGG 0.762753 1.3:+7673864 MS.gene051509:CDS
GGTGGCGGTTCCGATGACGG+CGG 0.772550 1.3:+7673909 MS.gene051509:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1.3:+7673850 MS.gene051509:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTAATTTTTTTTTGAATTT+TGG - chr1.3:7673714-7673733 None:intergenic 15.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1.3:7674074-7674093 MS.gene051509:CDS 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1.3:7673780-7673799 MS.gene051509:intron 20.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1.3:7673672-7673691 None:intergenic 25.0%
AATTGAGATCAGGGAATTTA+GGG - chr1.3:7673461-7673480 None:intergenic 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1.3:7673754-7673773 None:intergenic 30.0%
GAAACTAGACCTAGAATTAA+AGG + chr1.3:7674027-7674046 MS.gene051509:CDS 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1.3:7673462-7673481 None:intergenic 30.0%
TTAATTGCAGAGGATGAATA+CGG + chr1.3:7674084-7674103 MS.gene051509:CDS 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1.3:7673697-7673716 None:intergenic 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1.3:7673122-7673141 None:intergenic 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1.3:7673502-7673521 None:intergenic 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1.3:7673470-7673489 None:intergenic 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1.3:7673371-7673390 None:intergenic 35.0%
CTAGACCTAGAATTAAAGGA+AGG + chr1.3:7674031-7674050 MS.gene051509:CDS 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1.3:7673471-7673490 None:intergenic 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1.3:7673446-7673465 None:intergenic 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1.3:7673661-7673680 None:intergenic 35.0%
GCGAACCTTCCTTTAATTCT+AGG - chr1.3:7674039-7674058 None:intergenic 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1.3:7673501-7673520 None:intergenic 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1.3:7673500-7673519 None:intergenic 40.0%
TGGAATCACATGTGAGACAA+AGG - chr1.3:7673140-7673159 None:intergenic 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1.3:7673453-7673472 None:intergenic 40.0%
AAAGAGAAGCTAGGGTTTCG+AGG + chr1.3:7673935-7673954 MS.gene051509:CDS 45.0%
AGAGTGGATGTCATGATCAC+AGG - chr1.3:7673280-7673299 None:intergenic 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - chr1.3:7673616-7673635 None:intergenic 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1.3:7673160-7673179 None:intergenic 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1.3:7673850-7673869 MS.gene051509:CDS 45.0%
! GTTGTTGGCTGTTGTTGTTG+TGG - chr1.3:7673356-7673375 None:intergenic 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1.3:7673103-7673122 None:intergenic 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1.3:7673091-7673110 None:intergenic 45.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1.3:7673415-7673434 MS.gene051509:CDS 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1.3:7673814-7673833 None:intergenic 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1.3:7673834-7673853 MS.gene051509:CDS 50.0%
CAACGCTAAAACAGACACGC+CGG + chr1.3:7673524-7673543 MS.gene051509:CDS 50.0%
CCAAGTCTGTGAACAAGCTC+CGG + chr1.3:7673212-7673231 MS.gene051509:CDS 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1.3:7673820-7673839 MS.gene051509:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1.3:7673256-7673275 None:intergenic 50.0%
GGAAGCAGCTTCTGCTTCTT+CGG - chr1.3:7673415-7673434 None:intergenic 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1.3:7673864-7673883 MS.gene051509:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1.3:7673436-7673455 None:intergenic 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1.3:7673798-7673817 MS.gene051509:intron 50.0%
! GTTGGCTGTTGTTGTTGTGG+TGG - chr1.3:7673353-7673372 None:intergenic 50.0%
!! GTTGTTGTTGTGGTGGTGGA+AGG - chr1.3:7673346-7673365 None:intergenic 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1.3:7673588-7673607 None:intergenic 50.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1.3:7673200-7673219 None:intergenic 55.0%
AGCAGCTTCTGCTTCTTCGG+TGG - chr1.3:7673412-7673431 None:intergenic 55.0%
AGCTTCTGCTTCTTCGGTGG+TGG - chr1.3:7673409-7673428 None:intergenic 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1.3:7673927-7673946 MS.gene051509:CDS 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1.3:7673613-7673632 None:intergenic 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1.3:7673838-7673857 None:intergenic 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1.3:7673922-7673941 None:intergenic 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - chr1.3:7673215-7673234 None:intergenic 55.0%
! GGCTGTTGTTGTTGTGGTGG+TGG - chr1.3:7673350-7673369 None:intergenic 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1.3:7673610-7673629 None:intergenic 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1.3:7673167-7673186 None:intergenic 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1.3:7673296-7673315 None:intergenic 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1.3:7673343-7673362 None:intergenic 55.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1.3:7673540-7673559 MS.gene051509:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1.3:7673904-7673923 None:intergenic 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1.3:7673926-7673945 MS.gene051509:CDS 60.0%
CGGTTACCAAACGACGGCGA+CGG + chr1.3:7673870-7673889 MS.gene051509:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1.3:7673234-7673253 None:intergenic 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1.3:7673801-7673820 MS.gene051509:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1.3:7673805-7673824 MS.gene051509:CDS 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1.3:7673320-7673339 None:intergenic 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1.3:7673323-7673342 None:intergenic 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1.3:7673546-7673565 None:intergenic 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1.3:7673335-7673354 None:intergenic 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1.3:7673336-7673355 None:intergenic 60.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1.3:7673566-7673585 MS.gene051509:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1.3:7673571-7673590 None:intergenic 65.0%
CCAAACGACGGCGACGGAGA+CGG + chr1.3:7673876-7673895 MS.gene051509:CDS 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1.3:7673197-7673216 None:intergenic 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1.3:7673308-7673327 None:intergenic 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1.3:7673191-7673210 None:intergenic 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1.3:7673906-7673925 MS.gene051509:CDS 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1.3:7673175-7673194 None:intergenic 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1.3:7673247-7673266 None:intergenic 65.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1.3:7673561-7673580 None:intergenic 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1.3:7673555-7673574 MS.gene051509:CDS 70.0%
CCGTCTCCGTCGCCGTCGTT+TGG - chr1.3:7673879-7673898 None:intergenic 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1.3:7673568-7673587 None:intergenic 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1.3:7673309-7673328 None:intergenic 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1.3:7673562-7673581 None:intergenic 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1.3:7673194-7673213 None:intergenic 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1.3:7673190-7673209 None:intergenic 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1.3:7673909-7673928 MS.gene051509:CDS 70.0%
!! GACGGAGACGGCGCCGATGA+CGG + chr1.3:7673888-7673907 MS.gene051509:CDS 70.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1.3:7673912-7673931 MS.gene051509:CDS 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1.3:7673894-7673913 MS.gene051509:CDS 75.0%
!! GGAGACGGCGCCGATGACGG+TGG + chr1.3:7673891-7673910 MS.gene051509:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1.3:7673187-7673206 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 7673066 7674125 7673066 ID=MS.gene051509
chr1.3 mRNA 7673066 7674125 7673066 ID=MS.gene051509.t1;Parent=MS.gene051509
chr1.3 exon 7673066 7673695 7673066 ID=MS.gene051509.t1.exon1;Parent=MS.gene051509.t1
chr1.3 CDS 7673066 7673695 7673066 ID=cds.MS.gene051509.t1;Parent=MS.gene051509.t1
chr1.3 exon 7673802 7674125 7673802 ID=MS.gene051509.t1.exon2;Parent=MS.gene051509.t1
chr1.3 CDS 7673802 7674125 7673802 ID=cds.MS.gene051509.t1;Parent=MS.gene051509.t1
Gene Sequence

>MS.gene051509

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCACCGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGCTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTAAGAACGAGAAATCCAAAATTCAAAAAAAAATTACGATGAATCGTGAAATTTACCTCTTCAATTTGAACTCTGAATGTTCTTATTTCTTTTTTGTGTTGTTTAGGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACGGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTCGAGGTACAGAGAGAAGAGAAAGAATAGAAAGTTCGAGAAGACAATTCGTTACGCTTCTAGAAAAGCGTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA

Protein sequence

>MS.gene051509.t1

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNNSQQQSFFSENDHDATTEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNAKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVSRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC