Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51349.t1 | XP_013455606.1 | 98.7 | 381 | 5 | 0 | 1 | 381 | 96 | 476 | 9.70E-226 | 792.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51349.t1 | A0A072UIX2 | 98.7 | 381 | 5 | 0 | 1 | 381 | 96 | 476 | 7.0e-226 | 792.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene51349 | 0.801118 | 1.05E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene51349 | 0.846599 | 1.96E-59 | -1.69E-46 |
| MS.gene051744 | MS.gene51349 | 0.801266 | 9.76E-49 | -1.69E-46 |
| MS.gene053296 | MS.gene51349 | 0.815128 | 1.08E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene51349 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene51349 | 0.805455 | 1.32E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene51349 | 0.815289 | 9.98E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51349.t1 | MTR_4g046677 | 98.688 | 381 | 5 | 0 | 1 | 381 | 96 | 476 | 0.0 | 796 |
| MS.gene51349.t1 | MTR_2g088940 | 71.318 | 387 | 104 | 3 | 1 | 381 | 88 | 473 | 0.0 | 545 |
| MS.gene51349.t1 | MTR_2g088940 | 70.801 | 387 | 104 | 4 | 1 | 381 | 88 | 471 | 0.0 | 536 |
| MS.gene51349.t1 | MTR_4g046680 | 58.021 | 374 | 149 | 4 | 5 | 378 | 110 | 475 | 1.28e-155 | 447 |
| MS.gene51349.t1 | MTR_8g098835 | 45.128 | 390 | 189 | 7 | 1 | 377 | 137 | 514 | 1.51e-115 | 346 |
| MS.gene51349.t1 | MTR_5g010070 | 46.859 | 382 | 193 | 6 | 1 | 377 | 114 | 490 | 1.22e-113 | 340 |
| MS.gene51349.t1 | MTR_8g028765 | 45.550 | 382 | 201 | 6 | 1 | 378 | 109 | 487 | 7.50e-113 | 338 |
| MS.gene51349.t1 | MTR_4g061590 | 45.692 | 383 | 197 | 7 | 2 | 377 | 140 | 518 | 1.21e-111 | 337 |
| MS.gene51349.t1 | MTR_2g095970 | 45.000 | 380 | 201 | 6 | 2 | 377 | 165 | 540 | 1.14e-110 | 334 |
| MS.gene51349.t1 | MTR_7g063090 | 44.473 | 389 | 198 | 8 | 2 | 378 | 125 | 507 | 3.91e-110 | 332 |
| MS.gene51349.t1 | MTR_7g078320 | 44.357 | 381 | 205 | 5 | 2 | 378 | 110 | 487 | 9.54e-109 | 328 |
| MS.gene51349.t1 | MTR_3g068125 | 41.953 | 379 | 212 | 4 | 2 | 378 | 115 | 487 | 9.75e-109 | 328 |
| MS.gene51349.t1 | MTR_5g008060 | 37.500 | 384 | 227 | 5 | 1 | 376 | 157 | 535 | 9.94e-83 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51349.t1 | AT1G05280 | 58.568 | 391 | 152 | 6 | 1 | 381 | 100 | 490 | 5.92e-172 | 489 |
| MS.gene51349.t1 | AT1G05280 | 58.475 | 354 | 139 | 5 | 1 | 346 | 100 | 453 | 1.49e-153 | 441 |
| MS.gene51349.t1 | AT4G15240 | 51.852 | 378 | 177 | 4 | 2 | 378 | 111 | 484 | 1.08e-139 | 407 |
| MS.gene51349.t1 | AT4G23490 | 47.179 | 390 | 185 | 8 | 1 | 377 | 141 | 522 | 1.75e-116 | 348 |
| MS.gene51349.t1 | AT5G41460 | 46.615 | 384 | 195 | 7 | 1 | 378 | 142 | 521 | 2.53e-114 | 343 |
| MS.gene51349.t1 | AT1G01570 | 45.501 | 389 | 198 | 7 | 1 | 377 | 86 | 472 | 3.24e-113 | 339 |
| MS.gene51349.t1 | AT1G01570 | 45.501 | 389 | 198 | 7 | 1 | 377 | 117 | 503 | 8.15e-113 | 339 |
| MS.gene51349.t1 | AT4G11350 | 45.802 | 393 | 189 | 9 | 1 | 377 | 119 | 503 | 4.08e-111 | 334 |
| MS.gene51349.t1 | AT2G37730 | 44.149 | 376 | 200 | 4 | 2 | 370 | 129 | 501 | 2.67e-109 | 330 |
| MS.gene51349.t1 | AT1G07850 | 44.909 | 383 | 198 | 7 | 2 | 377 | 156 | 532 | 5.57e-100 | 307 |
| MS.gene51349.t1 | AT3G11420 | 40.103 | 389 | 215 | 8 | 2 | 378 | 123 | 505 | 5.93e-99 | 303 |
| MS.gene51349.t1 | AT4G00295 | 48.525 | 305 | 147 | 5 | 1 | 297 | 111 | 413 | 3.36e-93 | 287 |
| MS.gene51349.t1 | AT1G33250 | 39.257 | 377 | 223 | 3 | 1 | 372 | 161 | 536 | 7.80e-93 | 288 |
| MS.gene51349.t1 | AT5G12460 | 36.082 | 388 | 221 | 7 | 2 | 378 | 69 | 440 | 9.23e-81 | 254 |
| MS.gene51349.t1 | AT4G11350 | 51.913 | 183 | 81 | 2 | 1 | 176 | 119 | 301 | 2.55e-56 | 187 |
Find 79 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAATCGGTTGTTTGGTTT+TGG | 0.208966 | 4.1:+51007963 | MS.gene51349:CDS |
| AACATTCAAGCAGTGGAAAA+AGG | 0.233460 | 4.1:+51009018 | MS.gene51349:CDS |
| TCAAAATTGCTCAAAGGATT+TGG | 0.247836 | 4.1:+51009180 | MS.gene51349:CDS |
| TTGATGACTTCTAGTTTCTT+TGG | 0.255302 | 4.1:-51009208 | None:intergenic |
| ATGAAACAGGTTGATTTAAC+TGG | 0.275394 | 4.1:+51008725 | MS.gene51349:intron |
| TTCATCTCTTGCAAAGGTTT+TGG | 0.281442 | 4.1:+51008019 | MS.gene51349:CDS |
| ACATCACAACAATGCCTTCT+TGG | 0.314415 | 4.1:-51009824 | None:intergenic |
| GTATTATAAACAGTTATTAT+AGG | 0.330226 | 4.1:+51009149 | MS.gene51349:CDS |
| CCCCAACCATATGTTCTTGC+CGG | 0.331568 | 4.1:+51008976 | MS.gene51349:CDS |
| GAAAGGTATCCTCATCTATA+TGG | 0.333313 | 4.1:+51008065 | MS.gene51349:CDS |
| CATGAGCTTTGGTATTATAT+AGG | 0.361732 | 4.1:+51007918 | MS.gene51349:CDS |
| GTTGTCATGTTTGGAAAGAT+TGG | 0.361872 | 4.1:-51008821 | None:intergenic |
| TTACTGGATGCGCAGCTAAT+AGG | 0.364886 | 4.1:-51008760 | None:intergenic |
| TATTTCGATAGTGTCTCTTC+TGG | 0.373674 | 4.1:+51009118 | MS.gene51349:CDS |
| AATGAAGGGTTGTGTGTTCT+TGG | 0.376173 | 4.1:+51007659 | None:intergenic |
| AGAGACAGTAAGGGAGTTAC+TGG | 0.382398 | 4.1:-51008776 | None:intergenic |
| CAAAATATGATCATGAGCTT+TGG | 0.385050 | 4.1:+51007907 | MS.gene51349:CDS |
| CTTTGCAAGTGTATCGAAAC+CGG | 0.388738 | 4.1:-51007749 | None:intergenic |
| TATGAGCAGAATCGGTTGTT+TGG | 0.395496 | 4.1:+51007957 | MS.gene51349:CDS |
| GCTTGTGTAGTTGTCATGTT+TGG | 0.397468 | 4.1:-51008830 | None:intergenic |
| TCGAAACCGGGAAGTGTCTT+CGG | 0.416371 | 4.1:-51007736 | None:intergenic |
| CTCAAGTGCTAGTGACCAAC+TGG | 0.419998 | 4.1:+51009853 | MS.gene51349:CDS |
| CATGGACAATTTCAGTGTCA+TGG | 0.422607 | 4.1:+51008933 | MS.gene51349:CDS |
| GTGTCTCCGAAGACACTTCC+CGG | 0.425037 | 4.1:+51007730 | MS.gene51349:CDS |
| CAACATCCGGCAAGAACATA+TGG | 0.428812 | 4.1:-51008982 | None:intergenic |
| GATTTAACTGGAAATACCTT+CGG | 0.431263 | 4.1:+51008737 | MS.gene51349:CDS |
| TCCGGCAAGAACATATGGTT+GGG | 0.432372 | 4.1:-51008977 | None:intergenic |
| GAGGGCTTAGATCAGCTATC+CGG | 0.439343 | 4.1:+51007772 | MS.gene51349:CDS |
| AAGATTGGATCTGTGTAATC+TGG | 0.442009 | 4.1:-51008806 | None:intergenic |
| CTGAGATTTATGAGCAGAAT+CGG | 0.442403 | 4.1:+51007949 | MS.gene51349:CDS |
| CTTCACATCTGAATGATTCA+AGG | 0.452979 | 4.1:-51007823 | None:intergenic |
| TATTCATGTTTAGCTGAACT+TGG | 0.453154 | 4.1:+51008104 | MS.gene51349:CDS |
| TTGTTACCTGTTTGATGTCA+AGG | 0.455749 | 4.1:-51009252 | None:intergenic |
| ATGGACAATTTCAGTGTCAT+GGG | 0.456001 | 4.1:+51008934 | MS.gene51349:CDS |
| GATGTGAAGTGGTATGTGTT+TGG | 0.460214 | 4.1:+51007837 | MS.gene51349:CDS |
| CATAGAGGAGGAAGAGAAGA+AGG | 0.462515 | 4.1:-51007708 | None:intergenic |
| TGTTTAGCTGAACTTGGTGT+TGG | 0.467552 | 4.1:+51008110 | MS.gene51349:CDS |
| AGAGTCTTCACCAAATTCTC+CGG | 0.470157 | 4.1:-51007882 | None:intergenic |
| TGGATGATGCAGAGACAGTA+AGG | 0.476779 | 4.1:-51008786 | None:intergenic |
| GCTAGACCTTGACATCAAAC+AGG | 0.493228 | 4.1:+51009246 | MS.gene51349:CDS |
| TTTGTTACCTGATGGAAACC+TGG | 0.503363 | 4.1:-51008146 | None:intergenic |
| CAGTTGGTCACTAGCACTTG+AGG | 0.504072 | 4.1:-51009852 | None:intergenic |
| CGGTTTCGATACACTTGCAA+AGG | 0.513737 | 4.1:+51007750 | MS.gene51349:CDS |
| TCTCGCGCATTCACAACATC+CGG | 0.514725 | 4.1:-51008995 | None:intergenic |
| CCGCGACAACACGCGCCACC+CGG | 0.523774 | 4.1:-51007791 | None:intergenic |
| CCGGGTGGCGCGTGTTGTCG+CGG | 0.525441 | 4.1:+51007791 | MS.gene51349:CDS |
| AAACAATTTGCTATGACAGA+TGG | 0.528616 | 4.1:+51008906 | MS.gene51349:CDS |
| AGGGCTTAGATCAGCTATCC+GGG | 0.532992 | 4.1:+51007773 | MS.gene51349:CDS |
| ATCCGGCAAGAACATATGGT+TGG | 0.542164 | 4.1:-51008978 | None:intergenic |
| AGTTGGTCACTAGCACTTGA+GGG | 0.543154 | 4.1:-51009851 | None:intergenic |
| TTCGATACACTTGCAAAGGA+GGG | 0.547344 | 4.1:+51007754 | MS.gene51349:CDS |
| TTTCGATACACTTGCAAAGG+AGG | 0.552842 | 4.1:+51007753 | MS.gene51349:CDS |
| GAGTCTTCACCAAATTCTCC+GGG | 0.555356 | 4.1:-51007881 | None:intergenic |
| CGCGAGAAACATTCAAGCAG+TGG | 0.559585 | 4.1:+51009011 | MS.gene51349:CDS |
| TTCAGTTGCAGGCTCCAAGA+AGG | 0.560994 | 4.1:+51009810 | MS.gene51349:intron |
| CCTCATCTATATGGAAGTGA+TGG | 0.561800 | 4.1:+51008074 | MS.gene51349:CDS |
| TCTATATGGAAGTGATGGTA+GGG | 0.563146 | 4.1:+51008079 | MS.gene51349:CDS |
| ACATGAACCAGGTTTCCATC+AGG | 0.563922 | 4.1:+51008139 | MS.gene51349:CDS |
| CAGTAAATGTTGATTCTCAA+AGG | 0.567820 | 4.1:+51008873 | MS.gene51349:CDS |
| TTACAAGGATCAGGGTGAAG+AGG | 0.573104 | 4.1:-51009079 | None:intergenic |
| TATTAGTTCATCTCTTGCAA+AGG | 0.576283 | 4.1:+51008013 | MS.gene51349:CDS |
| CTCTAACAGAAATTTCCAGT+TGG | 0.577531 | 4.1:-51009868 | None:intergenic |
| ATCTATATGGAAGTGATGGT+AGG | 0.582221 | 4.1:+51008078 | MS.gene51349:CDS |
| TGAATCATTCAGATGTGAAG+TGG | 0.589711 | 4.1:+51007826 | MS.gene51349:CDS |
| AGTGTCTCTTCTGGTAAAGA+CGG | 0.597639 | 4.1:+51009127 | MS.gene51349:CDS |
| CCGGCAAGAACATATGGTTG+GGG | 0.603707 | 4.1:-51008976 | None:intergenic |
| GAAACTAGAAGTCATCAAAG+TGG | 0.613370 | 4.1:+51009213 | MS.gene51349:CDS |
| GTGTCTTCGGAGACACATAG+AGG | 0.621246 | 4.1:-51007723 | None:intergenic |
| GTTGGATTGACACATGAACC+AGG | 0.627174 | 4.1:+51008128 | MS.gene51349:CDS |
| TTTGCAAGTGTATCGAAACC+GGG | 0.633456 | 4.1:-51007748 | None:intergenic |
| TGGACAATTTCAGTGTCATG+GGG | 0.639158 | 4.1:+51008935 | MS.gene51349:CDS |
| CCATCACTTCCATATAGATG+AGG | 0.641487 | 4.1:-51008074 | None:intergenic |
| AAAACCAACAATGCAATGAA+GGG | 0.642497 | 4.1:+51007645 | None:intergenic |
| ATAGAGGAGGAAGAGAAGAA+GGG | 0.654986 | 4.1:-51007707 | None:intergenic |
| GGATGATGCAGAGACAGTAA+GGG | 0.659335 | 4.1:-51008785 | None:intergenic |
| TGTGTTTGGAGACGACGACA+CGG | 0.663318 | 4.1:+51007851 | MS.gene51349:CDS |
| ATGCGCAGCTAATAGGCCGA+AGG | 0.685610 | 4.1:-51008753 | None:intergenic |
| TCTTCGGAGACACATAGAGG+AGG | 0.694314 | 4.1:-51007720 | None:intergenic |
| GCTTAGATCAGCTATCCGGG+TGG | 0.738017 | 4.1:+51007776 | MS.gene51349:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAGTTTATATAAGATTA+TGG | - | chr4.1:51009784-51009803 | None:intergenic | 10.0% |
| !!! | AATTTTGAGTAATTTATTTT+TGG | + | chr4.1:51008206-51008225 | MS.gene51349:intron | 10.0% |
| !! | AAATTAACACCATAATTAAA+CGG | - | chr4.1:51009287-51009306 | None:intergenic | 15.0% |
| !! | GTATTATAAACAGTTATTAT+AGG | + | chr4.1:51009149-51009168 | MS.gene51349:CDS | 15.0% |
| !! | AAAAATAATCAATCTTGAGT+GGG | + | chr4.1:51009430-51009449 | MS.gene51349:intron | 20.0% |
| !! | ACAAAAACTATGCATTAATT+AGG | - | chr4.1:51008696-51008715 | None:intergenic | 20.0% |
| !!! | ACAGATCATTTTAGATTTTA+TGG | + | chr4.1:51008616-51008635 | MS.gene51349:intron | 20.0% |
| !!! | ACTCAAGATTGATTATTTTT+CGG | - | chr4.1:51009430-51009449 | None:intergenic | 20.0% |
| !!! | TAATTAATGCATAGTTTTTG+TGG | + | chr4.1:51008695-51008714 | MS.gene51349:intron | 20.0% |
| !!! | TTTCGAAATGCATTTTTTTT+GGG | + | chr4.1:51009350-51009369 | MS.gene51349:intron | 20.0% |
| !!! | TTTGAGTAATTTATTTTTGG+TGG | + | chr4.1:51008209-51008228 | MS.gene51349:intron | 20.0% |
| !!! | TTTTCGAAATGCATTTTTTT+TGG | + | chr4.1:51009349-51009368 | MS.gene51349:intron | 20.0% |
| !!! | TTTTGAAAAATTCCTAAACA+AGG | - | chr4.1:51009602-51009621 | None:intergenic | 20.0% |
| ! | AAAAACCCTGAAAAATATTG+TGG | - | chr4.1:51009740-51009759 | None:intergenic | 25.0% |
| ! | AAAATAATCAATCTTGAGTG+GGG | + | chr4.1:51009431-51009450 | MS.gene51349:intron | 25.0% |
| ! | ATTTCTCTTTCGTTAATTTC+AGG | - | chr4.1:51008286-51008305 | None:intergenic | 25.0% |
| ! | CATTAATTAGGCTCATTATA+GGG | - | chr4.1:51008684-51008703 | None:intergenic | 25.0% |
| ! | GAAAAATAATCAATCTTGAG+TGG | + | chr4.1:51009429-51009448 | MS.gene51349:intron | 25.0% |
| ! | TCTTATGTTATCAGCAAAAA+TGG | - | chr4.1:51009313-51009332 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCGTTAATTTCA+GGG | - | chr4.1:51008285-51008304 | None:intergenic | 25.0% |
| ! | TTTGCTGATAACATAAGATA+AGG | + | chr4.1:51009315-51009334 | MS.gene51349:intron | 25.0% |
| !! | ATCTTTTCAAAATTGCTCAA+AGG | + | chr4.1:51009174-51009193 | MS.gene51349:CDS | 25.0% |
| !! | ATTAACTATTTGTTACCTGA+TGG | - | chr4.1:51008157-51008176 | None:intergenic | 25.0% |
| !! | ATTTTATGGACCAAATAACT+CGG | + | chr4.1:51008630-51008649 | MS.gene51349:intron | 25.0% |
| !! | TAACATAAGATAAGGTATTC+CGG | + | chr4.1:51009323-51009342 | MS.gene51349:intron | 25.0% |
| !! | TGATTGGTTAAAATTCATGT+GGG | + | chr4.1:51008351-51008370 | MS.gene51349:intron | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr4.1:51008418-51008437 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCATG+TGG | + | chr4.1:51008350-51008369 | MS.gene51349:intron | 25.0% |
| !!! | CAATATTTTTCAGGGTTTTT+AGG | + | chr4.1:51009740-51009759 | MS.gene51349:intron | 25.0% |
| !!! | GTAATTTATTTTTGGTGGAA+TGG | + | chr4.1:51008214-51008233 | MS.gene51349:intron | 25.0% |
| !!! | TAAGGTTTTTGATTCTTGTT+TGG | + | chr4.1:51008043-51008062 | MS.gene51349:CDS | 25.0% |
| !!! | TTCAATTTTAACTTCGTGTT+TGG | - | chr4.1:51009693-51009712 | None:intergenic | 25.0% |
| !!! | TTTTATTTGATTTCAGTTGC+AGG | + | chr4.1:51009799-51009818 | MS.gene51349:intron | 25.0% |
| !!! | TTTTTGATTCTTGTTTGGAA+AGG | + | chr4.1:51008048-51008067 | MS.gene51349:CDS | 25.0% |
| AAATGCATTTCGAAAACTTC+CGG | - | chr4.1:51009345-51009364 | None:intergenic | 30.0% | |
| AACAAAAATAACCATCCAGA+AGG | - | chr4.1:51008545-51008564 | None:intergenic | 30.0% | |
| ATATGAGAATTTCGTTAACG+AGG | - | chr4.1:51008488-51008507 | None:intergenic | 30.0% | |
| CAAAATATGATCATGAGCTT+TGG | + | chr4.1:51007907-51007926 | MS.gene51349:CDS | 30.0% | |
| GATTTAACTGGAAATACCTT+CGG | + | chr4.1:51008737-51008756 | MS.gene51349:CDS | 30.0% | |
| GCATTAATTAGGCTCATTAT+AGG | - | chr4.1:51008685-51008704 | None:intergenic | 30.0% | |
| TATTAGTTCATCTCTTGCAA+AGG | + | chr4.1:51008013-51008032 | MS.gene51349:CDS | 30.0% | |
| TATTCATGTTTAGCTGAACT+TGG | + | chr4.1:51008104-51008123 | MS.gene51349:CDS | 30.0% | |
| TCAAAATTGCTCAAAGGATT+TGG | + | chr4.1:51009180-51009199 | MS.gene51349:CDS | 30.0% | |
| TTCAAAATGCATTTCAAGAC+CGG | - | chr4.1:51009530-51009549 | None:intergenic | 30.0% | |
| TTGTGGTTATGAAATGAAAC+AGG | + | chr4.1:51008712-51008731 | MS.gene51349:intron | 30.0% | |
| TTTGTGAGTCCGTTTAATTA+TGG | + | chr4.1:51009275-51009294 | MS.gene51349:intron | 30.0% | |
| ! | AAGATCGTAGATCTTTTACA+AGG | - | chr4.1:51009097-51009116 | None:intergenic | 30.0% |
| ! | ACGAATCCACAATATTTTTC+AGG | + | chr4.1:51009731-51009750 | MS.gene51349:intron | 30.0% |
| ! | CATGAGCTTTGGTATTATAT+AGG | + | chr4.1:51007918-51007937 | MS.gene51349:CDS | 30.0% |
| ! | CGAATCCACAATATTTTTCA+GGG | + | chr4.1:51009732-51009751 | MS.gene51349:intron | 30.0% |
| ! | TACATTTCTGATAGTGAAAC+TGG | - | chr4.1:51009504-51009523 | None:intergenic | 30.0% |
| ! | TAGATCTTTTACAAGGATCA+GGG | - | chr4.1:51009090-51009109 | None:intergenic | 30.0% |
| ! | TCTAACACACTCTTTTTGAT+TGG | - | chr4.1:51008433-51008452 | None:intergenic | 30.0% |
| !! | AAACAATTTGCTATGACAGA+TGG | + | chr4.1:51008906-51008925 | MS.gene51349:CDS | 30.0% |
| !! | AAACGTTGTTTTCCTTGTTT+AGG | + | chr4.1:51009587-51009606 | MS.gene51349:intron | 30.0% |
| !! | ATGAAACAGGTTGATTTAAC+TGG | + | chr4.1:51008725-51008744 | MS.gene51349:intron | 30.0% |
| !! | ATTCTAGAATCCGAGTTATT+TGG | - | chr4.1:51008643-51008662 | None:intergenic | 30.0% |
| !! | CAGTAAATGTTGATTCTCAA+AGG | + | chr4.1:51008873-51008892 | MS.gene51349:CDS | 30.0% |
| !! | TTGATGACTTCTAGTTTCTT+TGG | - | chr4.1:51009211-51009230 | None:intergenic | 30.0% |
| !!! | TATTTTTCAGGGTTTTTAGG+AGG | + | chr4.1:51009743-51009762 | MS.gene51349:intron | 30.0% |
| !!! | TTTTTGGGTAAACCTGTTAT+TGG | + | chr4.1:51009365-51009384 | MS.gene51349:intron | 30.0% |
| AACATTCAAGCAGTGGAAAA+AGG | + | chr4.1:51009018-51009037 | MS.gene51349:CDS | 35.0% | |
| AAGATTGGATCTGTGTAATC+TGG | - | chr4.1:51008809-51008828 | None:intergenic | 35.0% | |
| ACATTCAAGCAGTGGAAAAA+GGG | + | chr4.1:51009019-51009038 | MS.gene51349:CDS | 35.0% | |
| ATCTATATGGAAGTGATGGT+AGG | + | chr4.1:51008078-51008097 | MS.gene51349:CDS | 35.0% | |
| ATGGACAATTTCAGTGTCAT+GGG | + | chr4.1:51008934-51008953 | MS.gene51349:CDS | 35.0% | |
| ATGTGGGTCCCATATAAATT+TGG | - | chr4.1:51008382-51008401 | None:intergenic | 35.0% | |
| CTCTAACAGAAATTTCCAGT+TGG | - | chr4.1:51009871-51009890 | None:intergenic | 35.0% | |
| CTGAGATTTATGAGCAGAAT+CGG | + | chr4.1:51007949-51007968 | MS.gene51349:CDS | 35.0% | |
| CTTCACATCTGAATGATTCA+AGG | - | chr4.1:51007826-51007845 | None:intergenic | 35.0% | |
| GAAACTAGAAGTCATCAAAG+TGG | + | chr4.1:51009213-51009232 | MS.gene51349:CDS | 35.0% | |
| GTTGTCATGTTTGGAAAGAT+TGG | - | chr4.1:51008824-51008843 | None:intergenic | 35.0% | |
| TAATTAGGCTCATTATAGGG+AGG | - | chr4.1:51008681-51008700 | None:intergenic | 35.0% | |
| TATTTCGATAGTGTCTCTTC+TGG | + | chr4.1:51009118-51009137 | MS.gene51349:CDS | 35.0% | |
| TCTATATGGAAGTGATGGTA+GGG | + | chr4.1:51008079-51008098 | MS.gene51349:CDS | 35.0% | |
| TCTGTTTACATTAGTCCTTC+TGG | + | chr4.1:51008527-51008546 | MS.gene51349:intron | 35.0% | |
| TGAATCATTCAGATGTGAAG+TGG | + | chr4.1:51007826-51007845 | MS.gene51349:CDS | 35.0% | |
| TTCAACACACTCTCTTTGAT+TGG | + | chr4.1:51008335-51008354 | MS.gene51349:intron | 35.0% | |
| TTGTTACCTGTTTGATGTCA+AGG | - | chr4.1:51009255-51009274 | None:intergenic | 35.0% | |
| TTTACATTAGTCCTTCTGGA+TGG | + | chr4.1:51008531-51008550 | MS.gene51349:intron | 35.0% | |
| ! | GAAGTATCCATGAACTTTGT+CGG | + | chr4.1:51009391-51009410 | MS.gene51349:intron | 35.0% |
| ! | GTAGATCTTTTACAAGGATC+AGG | - | chr4.1:51009091-51009110 | None:intergenic | 35.0% |
| ! | TTCATCTCTTGCAAAGGTTT+TGG | + | chr4.1:51008019-51008038 | MS.gene51349:CDS | 35.0% |
| !! | GAAAGGTATCCTCATCTATA+TGG | + | chr4.1:51008065-51008084 | MS.gene51349:CDS | 35.0% |
| !! | TGGCTTGTTGGAATGATATT+TGG | - | chr4.1:51009673-51009692 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTGGAATGGCTTT+TGG | + | chr4.1:51007975-51007994 | MS.gene51349:CDS | 35.0% |
| ACATCACAACAATGCCTTCT+TGG | - | chr4.1:51009827-51009846 | None:intergenic | 40.0% | |
| AGAGTCTTCACCAAATTCTC+CGG | - | chr4.1:51007885-51007904 | None:intergenic | 40.0% | |
| AGTGTCTCTTCTGGTAAAGA+CGG | + | chr4.1:51009127-51009146 | MS.gene51349:CDS | 40.0% | |
| ATAGAGGAGGAAGAGAAGAA+GGG | - | chr4.1:51007710-51007729 | None:intergenic | 40.0% | |
| CACTATCAGAAATGTAACGC+CGG | + | chr4.1:51009508-51009527 | MS.gene51349:intron | 40.0% | |
| CATGGACAATTTCAGTGTCA+TGG | + | chr4.1:51008933-51008952 | MS.gene51349:CDS | 40.0% | |
| CCATCACTTCCATATAGATG+AGG | - | chr4.1:51008077-51008096 | None:intergenic | 40.0% | |
| CCTCATCTATATGGAAGTGA+TGG | + | chr4.1:51008074-51008093 | MS.gene51349:CDS | 40.0% | |
| CTTTGCAAGTGTATCGAAAC+CGG | - | chr4.1:51007752-51007771 | None:intergenic | 40.0% | |
| GATGTGAAGTGGTATGTGTT+TGG | + | chr4.1:51007837-51007856 | MS.gene51349:CDS | 40.0% | |
| GCTTGTGTAGTTGTCATGTT+TGG | - | chr4.1:51008833-51008852 | None:intergenic | 40.0% | |
| GGATACTTCACACCAATAAC+AGG | - | chr4.1:51009380-51009399 | None:intergenic | 40.0% | |
| GGGACCCACCAAATTTATAT+GGG | + | chr4.1:51008371-51008390 | MS.gene51349:intron | 40.0% | |
| GGGTCCCATATAAATTTGGT+GGG | - | chr4.1:51008378-51008397 | None:intergenic | 40.0% | |
| TATATGGGACCCACATGATT+TGG | + | chr4.1:51008386-51008405 | MS.gene51349:intron | 40.0% | |
| TATGAGCAGAATCGGTTGTT+TGG | + | chr4.1:51007957-51007976 | MS.gene51349:CDS | 40.0% | |
| TGGACAATTTCAGTGTCATG+GGG | + | chr4.1:51008935-51008954 | MS.gene51349:CDS | 40.0% | |
| TGGGACCCACCAAATTTATA+TGG | + | chr4.1:51008370-51008389 | MS.gene51349:intron | 40.0% | |
| TGGGTCCCATATAAATTTGG+TGG | - | chr4.1:51008379-51008398 | None:intergenic | 40.0% | |
| TTAGTCACCGACAAAGTTCA+TGG | - | chr4.1:51009401-51009420 | None:intergenic | 40.0% | |
| TTCGATACACTTGCAAAGGA+GGG | + | chr4.1:51007754-51007773 | MS.gene51349:CDS | 40.0% | |
| TTTCGATACACTTGCAAAGG+AGG | + | chr4.1:51007753-51007772 | MS.gene51349:CDS | 40.0% | |
| TTTGCAAGTGTATCGAAACC+GGG | - | chr4.1:51007751-51007770 | None:intergenic | 40.0% | |
| TTTGTTACCTGATGGAAACC+TGG | - | chr4.1:51008149-51008168 | None:intergenic | 40.0% | |
| ! | GCTATGACAGATGGTTTTCA+TGG | + | chr4.1:51008915-51008934 | MS.gene51349:CDS | 40.0% |
| ! | TCTGATAGTGAAACTGGACT+CGG | - | chr4.1:51009498-51009517 | None:intergenic | 40.0% |
| !! | CAGAATCGGTTGTTTGGTTT+TGG | + | chr4.1:51007963-51007982 | MS.gene51349:CDS | 40.0% |
| !! | TAACTTCGTGTTTGGCTTGT+TGG | - | chr4.1:51009685-51009704 | None:intergenic | 40.0% |
| !! | TGTTTAGCTGAACTTGGTGT+TGG | + | chr4.1:51008110-51008129 | MS.gene51349:CDS | 40.0% |
| !! | TTTCAGGGTTTTTAGGAGGA+TGG | + | chr4.1:51009747-51009766 | MS.gene51349:intron | 40.0% |
| !!! | GGTTTTTTTCCCGGAGAATT+TGG | + | chr4.1:51007872-51007891 | MS.gene51349:CDS | 40.0% |
| !!! | TCGGTTGTTTGGTTTTGGAA+TGG | + | chr4.1:51007968-51007987 | MS.gene51349:CDS | 40.0% |
| !!! | TCTTGCAAAGGTTTTGGCTA+AGG | + | chr4.1:51008025-51008044 | MS.gene51349:CDS | 40.0% |
| ACATGAACCAGGTTTCCATC+AGG | + | chr4.1:51008139-51008158 | MS.gene51349:CDS | 45.0% | |
| AGAGACAGTAAGGGAGTTAC+TGG | - | chr4.1:51008779-51008798 | None:intergenic | 45.0% | |
| AGTTGGTCACTAGCACTTGA+GGG | - | chr4.1:51009854-51009873 | None:intergenic | 45.0% | |
| ATCCGGCAAGAACATATGGT+TGG | - | chr4.1:51008981-51009000 | None:intergenic | 45.0% | |
| ATGGATCCCACCAAATCATG+TGG | - | chr4.1:51008399-51008418 | None:intergenic | 45.0% | |
| CAACATCCGGCAAGAACATA+TGG | - | chr4.1:51008985-51009004 | None:intergenic | 45.0% | |
| CATAGAGGAGGAAGAGAAGA+AGG | - | chr4.1:51007711-51007730 | None:intergenic | 45.0% | |
| CGAACCTGAGATCTTGCTTA+AGG | + | chr4.1:51009469-51009488 | MS.gene51349:intron | 45.0% | |
| CGGTTTCGATACACTTGCAA+AGG | + | chr4.1:51007750-51007769 | MS.gene51349:CDS | 45.0% | |
| GAGTCTTCACCAAATTCTCC+GGG | - | chr4.1:51007884-51007903 | None:intergenic | 45.0% | |
| GATGCCTTAAGCAAGATCTC+AGG | - | chr4.1:51009476-51009495 | None:intergenic | 45.0% | |
| GCTAGACCTTGACATCAAAC+AGG | + | chr4.1:51009246-51009265 | MS.gene51349:CDS | 45.0% | |
| GGATGATGCAGAGACAGTAA+GGG | - | chr4.1:51008788-51008807 | None:intergenic | 45.0% | |
| GTTGGATTGACACATGAACC+AGG | + | chr4.1:51008128-51008147 | MS.gene51349:CDS | 45.0% | |
| TCCGGCAAGAACATATGGTT+GGG | - | chr4.1:51008980-51008999 | None:intergenic | 45.0% | |
| TGGATCCCACCAAATCATGT+GGG | - | chr4.1:51008398-51008417 | None:intergenic | 45.0% | |
| TGGATGATGCAGAGACAGTA+AGG | - | chr4.1:51008789-51008808 | None:intergenic | 45.0% | |
| TTACAAGGATCAGGGTGAAG+AGG | - | chr4.1:51009082-51009101 | None:intergenic | 45.0% | |
| TTACTGGATGCGCAGCTAAT+AGG | - | chr4.1:51008763-51008782 | None:intergenic | 45.0% | |
| ! | CAAGATCTCAGGTTCGAGTT+GGG | - | chr4.1:51009465-51009484 | None:intergenic | 45.0% |
| ! | GAAGGGTCGTCTTCATTTTG+AGG | - | chr4.1:51007693-51007712 | None:intergenic | 45.0% |
| !!! | GGTTTTGGAATGGCTTTTGG+TGG | + | chr4.1:51007978-51007997 | MS.gene51349:CDS | 45.0% |
| AGGGCTTAGATCAGCTATCC+GGG | + | chr4.1:51007773-51007792 | MS.gene51349:CDS | 50.0% | |
| CAGTTGGTCACTAGCACTTG+AGG | - | chr4.1:51009855-51009874 | None:intergenic | 50.0% | |
| CCCCAACCATATGTTCTTGC+CGG | + | chr4.1:51008976-51008995 | MS.gene51349:CDS | 50.0% | |
| CCGGCAAGAACATATGGTTG+GGG | - | chr4.1:51008979-51008998 | None:intergenic | 50.0% | |
| CGCGAGAAACATTCAAGCAG+TGG | + | chr4.1:51009011-51009030 | MS.gene51349:CDS | 50.0% | |
| CTCAAGTGCTAGTGACCAAC+TGG | + | chr4.1:51009853-51009872 | MS.gene51349:CDS | 50.0% | |
| GAGGGCTTAGATCAGCTATC+CGG | + | chr4.1:51007772-51007791 | MS.gene51349:CDS | 50.0% | |
| GCAAGATCTCAGGTTCGAGT+TGG | - | chr4.1:51009466-51009485 | None:intergenic | 50.0% | |
| GTGTCTTCGGAGACACATAG+AGG | - | chr4.1:51007726-51007745 | None:intergenic | 50.0% | |
| TCTCGCGCATTCACAACATC+CGG | - | chr4.1:51008998-51009017 | None:intergenic | 50.0% | |
| TCTTCGGAGACACATAGAGG+AGG | - | chr4.1:51007723-51007742 | None:intergenic | 50.0% | |
| TGTGTTTGGAGACGACGACA+CGG | + | chr4.1:51007851-51007870 | MS.gene51349:CDS | 50.0% | |
| TTCAGTTGCAGGCTCCAAGA+AGG | + | chr4.1:51009810-51009829 | MS.gene51349:intron | 50.0% | |
| ! | ATGGGACCCACATGATTTGG+TGG | + | chr4.1:51008389-51008408 | MS.gene51349:intron | 50.0% |
| !! | TCGAAACCGGGAAGTGTCTT+CGG | - | chr4.1:51007739-51007758 | None:intergenic | 50.0% |
| !! | TGGGACCCACATGATTTGGT+GGG | + | chr4.1:51008390-51008409 | MS.gene51349:intron | 50.0% |
| !!! | CGACGACACGGTTTTTTTCC+CGG | + | chr4.1:51007863-51007882 | MS.gene51349:CDS | 50.0% |
| ATGCGCAGCTAATAGGCCGA+AGG | - | chr4.1:51008756-51008775 | None:intergenic | 55.0% | |
| GCTTAGATCAGCTATCCGGG+TGG | + | chr4.1:51007776-51007795 | MS.gene51349:CDS | 55.0% | |
| GTGTCTCCGAAGACACTTCC+CGG | + | chr4.1:51007730-51007749 | MS.gene51349:CDS | 55.0% | |
| !! | TCTCAGGTTCGAGTTGGGAG+AGG | - | chr4.1:51009460-51009479 | None:intergenic | 55.0% |
| !!! | GGAATGGCTTTTGGTGGTGC+TGG | + | chr4.1:51007984-51008003 | MS.gene51349:CDS | 55.0% |
| CCGCGACAACACGCGCCACC+CGG | - | chr4.1:51007794-51007813 | None:intergenic | 75.0% | |
| CCGGGTGGCGCGTGTTGTCG+CGG | + | chr4.1:51007791-51007810 | MS.gene51349:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 51007660 | 51009925 | 51007660 | ID=MS.gene51349 |
| chr4.1 | mRNA | 51007660 | 51009925 | 51007660 | ID=MS.gene51349.t1;Parent=MS.gene51349 |
| chr4.1 | exon | 51007660 | 51008160 | 51007660 | ID=MS.gene51349.t1.exon1;Parent=MS.gene51349.t1 |
| chr4.1 | CDS | 51007660 | 51008160 | 51007660 | ID=cds.MS.gene51349.t1;Parent=MS.gene51349.t1 |
| chr4.1 | exon | 51008734 | 51009267 | 51008734 | ID=MS.gene51349.t1.exon2;Parent=MS.gene51349.t1 |
| chr4.1 | CDS | 51008734 | 51009267 | 51008734 | ID=cds.MS.gene51349.t1;Parent=MS.gene51349.t1 |
| chr4.1 | exon | 51009815 | 51009925 | 51009815 | ID=MS.gene51349.t1.exon3;Parent=MS.gene51349.t1 |
| chr4.1 | CDS | 51009815 | 51009925 | 51009815 | ID=cds.MS.gene51349.t1;Parent=MS.gene51349.t1 |
| Gene Sequence |
| Protein sequence |
