Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51367.t1 | O22585.1 | 99 | 479 | 5 | 0 | 1 | 479 | 18 | 496 | 2.20E-288 | 1000.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51367.t1 | O22585 | 99.0 | 479 | 5 | 0 | 1 | 479 | 18 | 496 | 5.4e-291 | 1000.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51367.t1 | A0A072UUL3 | 97.9 | 479 | 10 | 0 | 1 | 479 | 18 | 496 | 9.8e-286 | 991.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51367 | MS.gene49858 | PPI |
| MS.gene35779 | MS.gene51367 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51367.t1 | MTR_4g045667 | 97.912 | 479 | 10 | 0 | 1 | 479 | 18 | 496 | 0.0 | 981 |
| MS.gene51367.t1 | MTR_2g089030 | 73.166 | 477 | 128 | 0 | 1 | 477 | 91 | 567 | 0.0 | 764 |
| MS.gene51367.t1 | MTR_5g013620 | 50.000 | 428 | 197 | 4 | 1 | 425 | 94 | 507 | 5.68e-153 | 446 |
| MS.gene51367.t1 | MTR_5g013640 | 50.000 | 428 | 197 | 4 | 1 | 425 | 92 | 505 | 7.70e-153 | 446 |
| MS.gene51367.t1 | MTR_4g099110 | 50.701 | 428 | 200 | 5 | 1 | 425 | 83 | 502 | 5.69e-150 | 439 |
| MS.gene51367.t1 | MTR_7g077410 | 48.380 | 432 | 213 | 4 | 1 | 428 | 270 | 695 | 8.78e-144 | 428 |
| MS.gene51367.t1 | MTR_5g026210 | 44.560 | 386 | 210 | 3 | 2 | 385 | 224 | 607 | 4.45e-124 | 376 |
| MS.gene51367.t1 | MTR_6g477780 | 51.744 | 344 | 157 | 6 | 87 | 425 | 9 | 348 | 5.62e-119 | 354 |
| MS.gene51367.t1 | MTR_8g099775 | 36.952 | 433 | 260 | 8 | 2 | 427 | 85 | 511 | 8.71e-98 | 305 |
| MS.gene51367.t1 | MTR_5g026210 | 45.645 | 287 | 150 | 2 | 2 | 287 | 224 | 505 | 1.23e-92 | 291 |
| MS.gene51367.t1 | MTR_2g020240 | 38.005 | 371 | 216 | 6 | 2 | 366 | 89 | 451 | 6.49e-88 | 279 |
| MS.gene51367.t1 | MTR_5g026210 | 46.835 | 237 | 125 | 1 | 2 | 237 | 224 | 460 | 2.00e-79 | 255 |
| MS.gene51367.t1 | MTR_2g020240 | 39.130 | 322 | 183 | 5 | 50 | 366 | 3 | 316 | 3.11e-79 | 252 |
| MS.gene51367.t1 | MTR_6g477770 | 47.727 | 88 | 46 | 0 | 1 | 88 | 111 | 198 | 1.03e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51367.t1 | AT4G15210 | 69.167 | 480 | 147 | 1 | 1 | 479 | 19 | 498 | 0.0 | 721 |
| MS.gene51367.t1 | AT2G32290 | 66.946 | 478 | 155 | 2 | 1 | 477 | 83 | 558 | 0.0 | 680 |
| MS.gene51367.t1 | AT4G15210 | 69.438 | 445 | 136 | 0 | 35 | 479 | 1 | 445 | 0.0 | 677 |
| MS.gene51367.t1 | AT4G15210 | 69.438 | 445 | 136 | 0 | 35 | 479 | 1 | 445 | 0.0 | 677 |
| MS.gene51367.t1 | AT4G15210 | 71.429 | 392 | 111 | 1 | 1 | 391 | 19 | 410 | 0.0 | 610 |
| MS.gene51367.t1 | AT4G00490 | 51.157 | 432 | 201 | 4 | 1 | 428 | 100 | 525 | 2.81e-159 | 462 |
| MS.gene51367.t1 | AT4G17090 | 50.000 | 428 | 203 | 4 | 1 | 425 | 91 | 510 | 4.41e-157 | 457 |
| MS.gene51367.t1 | AT3G23920 | 50.345 | 435 | 209 | 6 | 1 | 430 | 111 | 543 | 1.24e-154 | 452 |
| MS.gene51367.t1 | AT2G45880 | 45.958 | 433 | 222 | 5 | 1 | 428 | 253 | 678 | 1.69e-134 | 404 |
| MS.gene51367.t1 | AT5G45300 | 40.465 | 430 | 248 | 4 | 1 | 428 | 260 | 683 | 2.45e-115 | 355 |
| MS.gene51367.t1 | AT5G45300 | 40.465 | 430 | 248 | 4 | 1 | 428 | 258 | 681 | 3.42e-115 | 354 |
| MS.gene51367.t1 | AT5G45300 | 40.465 | 430 | 248 | 4 | 1 | 428 | 274 | 697 | 4.38e-115 | 354 |
| MS.gene51367.t1 | AT5G55700 | 40.995 | 422 | 231 | 8 | 18 | 429 | 118 | 531 | 3.74e-108 | 331 |
| MS.gene51367.t1 | AT5G55700 | 41.399 | 343 | 183 | 8 | 96 | 428 | 33 | 367 | 1.74e-84 | 265 |
| MS.gene51367.t1 | AT5G18670 | 33.333 | 423 | 263 | 6 | 2 | 422 | 93 | 498 | 8.77e-72 | 237 |
Find 110 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGAATTGGAGAGTTTC+AGG | 0.170209 | 4.1:-51549156 | MS.gene51367:intron |
| ACACCAATCGCTCCGGTATT+AGG | 0.174836 | 4.1:-51549704 | MS.gene51367:CDS |
| AGAACATCAGCAGGAATCTT+TGG | 0.307180 | 4.1:+51548024 | None:intergenic |
| GGATGGCAATTTCCTGGAAT+TGG | 0.314241 | 4.1:-51549167 | MS.gene51367:CDS |
| ACTCCATACATCCGAAGTTT+TGG | 0.319950 | 4.1:+51548275 | None:intergenic |
| CTACATTTCCTCCACATTGA+TGG | 0.320030 | 4.1:+51549796 | None:intergenic |
| CACCAATCGCTCCGGTATTA+GGG | 0.331129 | 4.1:-51549703 | MS.gene51367:CDS |
| TGAAGCTAATAAAGCTTTCC+TGG | 0.337953 | 4.1:-51548824 | MS.gene51367:CDS |
| TTGAAGAATTCGGTAGATTC+TGG | 0.345794 | 4.1:+51548937 | None:intergenic |
| AGTTGTTCTTTAAGTCCATC+TGG | 0.346354 | 4.1:+51549978 | None:intergenic |
| GATAACAAACCCATCTTTCA+TGG | 0.347915 | 4.1:-51549654 | MS.gene51367:CDS |
| ATTGGTTAGAATACCAAGTT+AGG | 0.349643 | 4.1:+51548875 | None:intergenic |
| GATCACCATGATTCAGCAAT+TGG | 0.366811 | 4.1:+51548857 | None:intergenic |
| GAAACAGACATGAAAGTTGA+TGG | 0.371042 | 4.1:-51547958 | MS.gene51367:CDS |
| AGCCAATACCGCCGTTCCCC+TGG | 0.375627 | 4.1:-51547987 | MS.gene51367:CDS |
| ACCTGAAACTCTCCAATTCC+AGG | 0.378431 | 4.1:+51549155 | None:intergenic |
| AATCAAGGATGGCAATTTCC+TGG | 0.389845 | 4.1:-51549173 | MS.gene51367:CDS |
| CATGTCTGTTTCTGAATCCC+AGG | 0.393293 | 4.1:+51547969 | None:intergenic |
| TCCCAGGGGAACGGCGGTAT+TGG | 0.394469 | 4.1:+51547985 | None:intergenic |
| CAAGCACCCACTTTGGTAAT+GGG | 0.400087 | 4.1:+51549757 | None:intergenic |
| AAGCTTTATTAGCTTCATCT+AGG | 0.401337 | 4.1:+51548830 | None:intergenic |
| TTGTACGTGCCAGCGTCATC+TGG | 0.406376 | 4.1:+51548967 | None:intergenic |
| GCGATTGGTGTAGAAGATAT+CGG | 0.407928 | 4.1:+51549716 | None:intergenic |
| GTCTTGCATTCAGTATGATT+TGG | 0.408923 | 4.1:+51548324 | None:intergenic |
| AAAGCAGCTGCAGCGAGTGC+TGG | 0.411824 | 4.1:-51549009 | MS.gene51367:CDS |
| TTTGGTCCTGATCGCTTTAA+CGG | 0.417754 | 4.1:+51548042 | None:intergenic |
| GGCTGTTCTTCCATGAAAGA+TGG | 0.423150 | 4.1:+51549644 | None:intergenic |
| CTGGAGAAAATGCACTTTCA+AGG | 0.424053 | 4.1:-51548367 | MS.gene51367:CDS |
| CTAATTTGACTTTGCATCCC+AGG | 0.427549 | 4.1:+51548806 | None:intergenic |
| TCAAGCACCCACTTTGGTAA+TGG | 0.435426 | 4.1:+51549756 | None:intergenic |
| GTGAGTTCTGCAGCGTGATT+CGG | 0.440264 | 4.1:+51548663 | None:intergenic |
| CTATGTATAATAAAGGTCTC+TGG | 0.447912 | 4.1:-51548708 | MS.gene51367:intron |
| CCTCCAAAACTTCGGATGTA+TGG | 0.448466 | 4.1:-51548278 | MS.gene51367:CDS |
| AAGGAAAATTCTTCCTAACT+TGG | 0.449934 | 4.1:-51548888 | MS.gene51367:CDS |
| CACCAATGCTCAGATATTCC+TGG | 0.453909 | 4.1:+51549679 | None:intergenic |
| AGGGACCTAAGGAGTATGAT+TGG | 0.463127 | 4.1:-51549887 | MS.gene51367:CDS |
| CGAGTGCTGGCCATTCTGAA+TGG | 0.465242 | 4.1:-51548996 | MS.gene51367:CDS |
| CATCAATGTGGAGGAAATGT+AGG | 0.469434 | 4.1:-51549795 | MS.gene51367:CDS |
| CAAAGTTCAACTCACCTCAA+TGG | 0.475916 | 4.1:+51549623 | None:intergenic |
| GCACTCCAATCATACTCCTT+AGG | 0.478043 | 4.1:+51549882 | None:intergenic |
| GGTAAAGATGCATGCAGATC+AGG | 0.484424 | 4.1:-51548186 | MS.gene51367:intron |
| GTGTTATGACAAATATTTGA+AGG | 0.488663 | 4.1:-51549040 | MS.gene51367:CDS |
| ATAGACATTGAAGTCGGTCT+TGG | 0.489311 | 4.1:-51549233 | MS.gene51367:CDS |
| ACCGAATTCTTCAAAACAAA+CGG | 0.489789 | 4.1:-51548928 | MS.gene51367:CDS |
| CCGTCTTATCCGCAGAATCA+AGG | 0.494530 | 4.1:-51549188 | MS.gene51367:CDS |
| CGATTGGTGTAGAAGATATC+GGG | 0.495976 | 4.1:+51549717 | None:intergenic |
| GGTCCTGATCGCTTTAACGG+TGG | 0.496755 | 4.1:+51548045 | None:intergenic |
| CCGTCTTTGTTGACACCTTG+TGG | 0.501716 | 4.1:+51548302 | None:intergenic |
| ACCACAGAAACTTGTTCAGC+AGG | 0.503110 | 4.1:-51548505 | MS.gene51367:intron |
| GGCACATACCTTACTGAGAA+AGG | 0.503515 | 4.1:-51548907 | MS.gene51367:CDS |
| GTCCCTAATACCGGAGCGAT+TGG | 0.504370 | 4.1:+51549701 | None:intergenic |
| ATATTCCTGGTCCCTAATAC+CGG | 0.506817 | 4.1:+51549692 | None:intergenic |
| CCTTGATTCTGCGGATAAGA+CGG | 0.507484 | 4.1:+51549188 | None:intergenic |
| TCTAACCAATTGCTGAATCA+TGG | 0.509733 | 4.1:-51548862 | MS.gene51367:CDS |
| CACGCTGCAGAACTCACTGC+TGG | 0.509974 | 4.1:-51548657 | MS.gene51367:CDS |
| CAAATTGCAGGATTACTGTT+CGG | 0.510588 | 4.1:-51548094 | MS.gene51367:intron |
| GAGTGCTGGCCATTCTGAAT+GGG | 0.513626 | 4.1:-51548995 | MS.gene51367:CDS |
| GCTGTTCTTCCATGAAAGAT+GGG | 0.513947 | 4.1:+51549645 | None:intergenic |
| CTCGTGCAACTACGAGCAGC+AGG | 0.514137 | 4.1:-51549957 | MS.gene51367:CDS |
| TTCAATGTCTATTATAACCT+CGG | 0.515003 | 4.1:+51549244 | None:intergenic |
| TGTTATGATCGATGTCTGGT+GGG | 0.519735 | 4.1:-51549925 | MS.gene51367:CDS |
| CCGATGTCAAGCACCCACTT+TGG | 0.522352 | 4.1:+51549750 | None:intergenic |
| ATCAATGTGGAGGAAATGTA+GGG | 0.527842 | 4.1:-51549794 | MS.gene51367:CDS |
| CATTGAACAAAAGGGACCTA+AGG | 0.530418 | 4.1:-51549898 | MS.gene51367:CDS |
| CTTGATTCTGCGGATAAGAC+GGG | 0.531810 | 4.1:+51549189 | None:intergenic |
| GACCCTGAAAAGTACAATCA+TGG | 0.532554 | 4.1:-51548072 | MS.gene51367:CDS |
| GTTGTTCTTTAAGTCCATCT+GGG | 0.534198 | 4.1:+51549979 | None:intergenic |
| GCTTCATTAAGAACATCAGC+AGG | 0.535123 | 4.1:+51548015 | None:intergenic |
| GCCAATACCGCCGTTCCCCT+GGG | 0.540968 | 4.1:-51547986 | MS.gene51367:CDS |
| ATCTTCTACACCAATCGCTC+CGG | 0.545526 | 4.1:-51549711 | MS.gene51367:CDS |
| ATACCACCGTTAAAGCGATC+AGG | 0.546653 | 4.1:-51548048 | MS.gene51367:CDS |
| ATGTCTGTTTCTGAATCCCA+GGG | 0.546684 | 4.1:+51547970 | None:intergenic |
| TAAAGGTCTCTGGAATTCAC+TGG | 0.547752 | 4.1:-51548698 | MS.gene51367:intron |
| GACCAGGAATATCTGAGCAT+TGG | 0.551269 | 4.1:-51549681 | MS.gene51367:CDS |
| CTACGAGCAGCAGGCGTCGA+CGG | 0.551976 | 4.1:-51549948 | MS.gene51367:CDS |
| GTGTTATGATCGATGTCTGG+TGG | 0.555121 | 4.1:-51549926 | MS.gene51367:CDS |
| TCATGGAAGAACAGCCATTG+AGG | 0.556827 | 4.1:-51549637 | MS.gene51367:intron |
| GTTTCTGAATCCCAGGGGAA+CGG | 0.561610 | 4.1:+51547976 | None:intergenic |
| ACGGTGTTATGATCGATGTC+TGG | 0.564978 | 4.1:-51549929 | MS.gene51367:CDS |
| GTTATGATCGATGTCTGGTG+GGG | 0.566303 | 4.1:-51549924 | MS.gene51367:CDS |
| AACAGGTACTGAGTGGAGGT+TGG | 0.567639 | 4.1:-51548409 | MS.gene51367:intron |
| GAAGTCGGTCTTGGTCCAGC+AGG | 0.569062 | 4.1:-51549224 | MS.gene51367:CDS |
| TCGCTCCGGTATTAGGGACC+AGG | 0.577196 | 4.1:-51549697 | MS.gene51367:CDS |
| AATTGCCATCCTTGATTCTG+CGG | 0.582906 | 4.1:+51549179 | None:intergenic |
| GGTATCCATCTCTATCATCA+AGG | 0.584578 | 4.1:+51548625 | None:intergenic |
| CTGGTAGTTCCCATTCAGAA+TGG | 0.585248 | 4.1:+51548986 | None:intergenic |
| AAGACGGCCCTCCAAAACTT+CGG | 0.585352 | 4.1:-51548286 | MS.gene51367:CDS |
| GGGTATCTGAGTTCTCCTGC+TGG | 0.587322 | 4.1:+51549209 | None:intergenic |
| GAAGCTAATAAAGCTTTCCT+GGG | 0.588794 | 4.1:-51548823 | MS.gene51367:CDS |
| TACAACCTTGATGATAGAGA+TGG | 0.592832 | 4.1:-51548630 | MS.gene51367:CDS |
| GTTATAATAGACATTGAAGT+CGG | 0.595729 | 4.1:-51549239 | MS.gene51367:CDS |
| ACCTGCTGAACAAGTTTCTG+TGG | 0.599130 | 4.1:+51548504 | None:intergenic |
| TAAACATCCCATTACCAAAG+TGG | 0.599300 | 4.1:-51549764 | MS.gene51367:CDS |
| TTATGATCGATGTCTGGTGG+GGG | 0.599720 | 4.1:-51549923 | MS.gene51367:CDS |
| CCAAAGTGGGTGCTTGACAT+CGG | 0.611618 | 4.1:-51549750 | MS.gene51367:CDS |
| AAACATCCCATTACCAAAGT+GGG | 0.623128 | 4.1:-51549763 | MS.gene51367:CDS |
| ATGTCATTCCATCAATGTGG+AGG | 0.631344 | 4.1:-51549804 | MS.gene51367:CDS |
| AATGTCTTCGAAGACCCAGA+TGG | 0.637363 | 4.1:-51549993 | MS.gene51367:CDS |
| CTTATCCGCAGAATCAAGGA+TGG | 0.644913 | 4.1:-51549184 | MS.gene51367:CDS |
| CCACAAGGTGTCAACAAAGA+CGG | 0.645003 | 4.1:-51548302 | MS.gene51367:CDS |
| TCTGAATCCCAGGGGAACGG+CGG | 0.648038 | 4.1:+51547979 | None:intergenic |
| ATACTGAATGCAAGACCACA+AGG | 0.668768 | 4.1:-51548317 | MS.gene51367:CDS |
| AGGTCTCTGGAATTCACTGG+TGG | 0.672373 | 4.1:-51548695 | MS.gene51367:CDS |
| ATCATGTCATTCCATCAATG+TGG | 0.675140 | 4.1:-51549807 | MS.gene51367:CDS |
| TTAGATCATCTGATAGACGA+AGG | 0.691757 | 4.1:+51548246 | None:intergenic |
| TGGGAACTACCAGATGACGC+TGG | 0.712299 | 4.1:-51548976 | MS.gene51367:CDS |
| TCAATGTGGAGGAAATGTAG+GGG | 0.715859 | 4.1:-51549793 | MS.gene51367:CDS |
| TATGAACAGGTACTGAGTGG+AGG | 0.727187 | 4.1:-51548413 | MS.gene51367:intron |
| TGTCTGTTTCTGAATCCCAG+GGG | 0.737797 | 4.1:+51547971 | None:intergenic |
| ATGTATGAACAGGTACTGAG+TGG | 0.748627 | 4.1:-51548416 | MS.gene51367:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGTGTGAAATTATCT+GGG | - | chr4.1:51548718-51548737 | MS.gene51367:intron | 20.0% |
| !! | TAAAAATGTGTGAAATTATC+TGG | - | chr4.1:51548717-51548736 | MS.gene51367:intron | 20.0% |
| !! | TGATATATTCAAAAAGTTTG+TGG | - | chr4.1:51549904-51549923 | MS.gene51367:CDS | 20.0% |
| !!! | AAAAGTACTATAGTAACTAA+TGG | + | chr4.1:51548768-51548787 | None:intergenic | 20.0% |
| ! | ACTATTTGGAAGAAAAATGA+AGG | + | chr4.1:51549373-51549392 | None:intergenic | 25.0% |
| ! | ATAGTTAGAGGTTAACTATT+TGG | + | chr4.1:51549387-51549406 | None:intergenic | 25.0% |
| ! | CCTCTAACTATGTATAATAA+AGG | - | chr4.1:51549396-51549415 | MS.gene51367:intron | 25.0% |
| ! | CCTTTATTATACATAGTTAG+AGG | + | chr4.1:51549399-51549418 | None:intergenic | 25.0% |
| ! | GTGTTATGACAAATATTTGA+AGG | - | chr4.1:51549071-51549090 | MS.gene51367:intron | 25.0% |
| ! | GTTATAATAGACATTGAAGT+CGG | - | chr4.1:51548872-51548891 | MS.gene51367:CDS | 25.0% |
| ! | TTCAATGTCTATTATAACCT+CGG | + | chr4.1:51548870-51548889 | None:intergenic | 25.0% |
| !! | TTTCAACTTGTTCAAAAATG+TGG | - | chr4.1:51548265-51548284 | MS.gene51367:CDS | 25.0% |
| AAGGAAAATTCTTCCTAACT+TGG | - | chr4.1:51549223-51549242 | MS.gene51367:CDS | 30.0% | |
| AAGGTGATATTCGTTAATTG+CGG | + | chr4.1:51549354-51549373 | None:intergenic | 30.0% | |
| AATTTAACATGTAGAGCAAG+TGG | + | chr4.1:51549664-51549683 | None:intergenic | 30.0% | |
| ACCGAATTCTTCAAAACAAA+CGG | - | chr4.1:51549183-51549202 | MS.gene51367:CDS | 30.0% | |
| AGAGAAAAAATTGAAGTTGC+TGG | - | chr4.1:51549725-51549744 | MS.gene51367:CDS | 30.0% | |
| ATTGGTTAGAATACCAAGTT+AGG | + | chr4.1:51549239-51549258 | None:intergenic | 30.0% | |
| CCATGTAAGAGAATTAACTA+GGG | - | chr4.1:51548542-51548561 | MS.gene51367:CDS | 30.0% | |
| CTATGTATAATAAAGGTCTC+TGG | - | chr4.1:51549403-51549422 | MS.gene51367:intron | 30.0% | |
| TCCATGTAAGAGAATTAACT+AGG | - | chr4.1:51548541-51548560 | MS.gene51367:CDS | 30.0% | |
| TCTTGACCAATGATATAGAT+CGG | + | chr4.1:51548631-51548650 | None:intergenic | 30.0% | |
| TTTGGTTACTGGAATAAGAT+TGG | - | chr4.1:51548566-51548585 | MS.gene51367:CDS | 30.0% | |
| ! | AAGAGAATTAACTAGGGTTT+TGG | - | chr4.1:51548548-51548567 | MS.gene51367:CDS | 30.0% |
| ! | AGAATTTTCCTTTCTCAGTA+AGG | + | chr4.1:51549215-51549234 | None:intergenic | 30.0% |
| ! | ATTTTACATGTCTTGAGATG+AGG | - | chr4.1:51549551-51549570 | MS.gene51367:intron | 30.0% |
| ! | TTTTACATGTCTTGAGATGA+GGG | - | chr4.1:51549552-51549571 | MS.gene51367:intron | 30.0% |
| !! | AAGCTTTATTAGCTTCATCT+AGG | + | chr4.1:51549284-51549303 | None:intergenic | 30.0% |
| !! | CTTAGTCATTGATTTGAGAT+CGG | + | chr4.1:51548694-51548713 | None:intergenic | 30.0% |
| !!! | ACAGTTTTGATTTAAAGCTG+TGG | + | chr4.1:51548990-51549009 | None:intergenic | 30.0% |
| AAAATGTGACGTGCATTACA+TGG | + | chr4.1:51549961-51549980 | None:intergenic | 35.0% | |
| AAACATCCCATTACCAAAGT+GGG | - | chr4.1:51548348-51548367 | MS.gene51367:CDS | 35.0% | |
| AACAGTAATCCTGCAATTTG+AGG | + | chr4.1:51550017-51550036 | None:intergenic | 35.0% | |
| ACAGTAATCCTGCAATTTGA+GGG | + | chr4.1:51550016-51550035 | None:intergenic | 35.0% | |
| ACTGTATATCTGTGCAAAGT+AGG | + | chr4.1:51548801-51548820 | None:intergenic | 35.0% | |
| AGTTGTTCTTTAAGTCCATC+TGG | + | chr4.1:51548136-51548155 | None:intergenic | 35.0% | |
| ATCAATGTGGAGGAAATGTA+GGG | - | chr4.1:51548317-51548336 | MS.gene51367:CDS | 35.0% | |
| ATCATGTCATTCCATCAATG+TGG | - | chr4.1:51548304-51548323 | MS.gene51367:CDS | 35.0% | |
| ATCCTTCCGATCTATATCAT+TGG | - | chr4.1:51548622-51548641 | MS.gene51367:CDS | 35.0% | |
| CAAATTGCAGGATTACTGTT+CGG | - | chr4.1:51550017-51550036 | MS.gene51367:CDS | 35.0% | |
| CACAGTAGTTTATGTGTATG+AGG | + | chr4.1:51547972-51547991 | None:intergenic | 35.0% | |
| CCCTAGTTAATTCTCTTACA+TGG | + | chr4.1:51548545-51548564 | None:intergenic | 35.0% | |
| CGAAACATGAATGTATGAAC+AGG | - | chr4.1:51549685-51549704 | MS.gene51367:CDS | 35.0% | |
| GAAACAGACATGAAAGTTGA+TGG | - | chr4.1:51550153-51550172 | MS.gene51367:intron | 35.0% | |
| GAAGCTAATAAAGCTTTCCT+GGG | - | chr4.1:51549288-51549307 | MS.gene51367:CDS | 35.0% | |
| GATAACAAACCCATCTTTCA+TGG | - | chr4.1:51548457-51548476 | MS.gene51367:intron | 35.0% | |
| GTCTTGCATTCAGTATGATT+TGG | + | chr4.1:51549790-51549809 | None:intergenic | 35.0% | |
| GTTGTTCTTTAAGTCCATCT+GGG | + | chr4.1:51548135-51548154 | None:intergenic | 35.0% | |
| TAAACATCCCATTACCAAAG+TGG | - | chr4.1:51548347-51548366 | MS.gene51367:CDS | 35.0% | |
| TATGTGTATGAGGACTTACT+GGG | + | chr4.1:51547962-51547981 | None:intergenic | 35.0% | |
| TCTAACCAATTGCTGAATCA+TGG | - | chr4.1:51549249-51549268 | MS.gene51367:CDS | 35.0% | |
| TGAAGCTAATAAAGCTTTCC+TGG | - | chr4.1:51549287-51549306 | MS.gene51367:CDS | 35.0% | |
| TTAGATCATCTGATAGACGA+AGG | + | chr4.1:51549868-51549887 | None:intergenic | 35.0% | |
| TTATGTGTATGAGGACTTAC+TGG | + | chr4.1:51547963-51547982 | None:intergenic | 35.0% | |
| TTGAAGAATTCGGTAGATTC+TGG | + | chr4.1:51549177-51549196 | None:intergenic | 35.0% | |
| ! | ACTATAGTAACTAATGGACC+CGG | + | chr4.1:51548762-51548781 | None:intergenic | 35.0% |
| ! | ATGCCATGATTGTACTTTTC+AGG | + | chr4.1:51550045-51550064 | None:intergenic | 35.0% |
| ! | TACAACCTTGATGATAGAGA+TGG | - | chr4.1:51549481-51549500 | MS.gene51367:intron | 35.0% |
| ! | TGCCATGATTGTACTTTTCA+GGG | + | chr4.1:51550044-51550063 | None:intergenic | 35.0% |
| !! | CATTGTTTTTCTTCGTAGCT+CGG | - | chr4.1:51548041-51548060 | MS.gene51367:CDS | 35.0% |
| !!! | ACACTATTTTTGCAATGGGA+CGG | + | chr4.1:51549510-51549529 | None:intergenic | 35.0% |
| !!! | ACGAGACACTATTTTTGCAA+TGG | + | chr4.1:51549515-51549534 | None:intergenic | 35.0% |
| !!! | CGAGACACTATTTTTGCAAT+GGG | + | chr4.1:51549514-51549533 | None:intergenic | 35.0% |
| !!! | GCCGTTTGTTTTGAAGAATT+CGG | + | chr4.1:51549187-51549206 | None:intergenic | 35.0% |
| !!! | GTCAGATCTTTTAAAATCCG+AGG | - | chr4.1:51548850-51548869 | MS.gene51367:CDS | 35.0% |
| !!! | TTAACTAGGGTTTTGGTTAC+TGG | - | chr4.1:51548555-51548574 | MS.gene51367:CDS | 35.0% |
| AATCAAGGATGGCAATTTCC+TGG | - | chr4.1:51548938-51548957 | MS.gene51367:CDS | 40.0% | |
| AATTGCCATCCTTGATTCTG+CGG | + | chr4.1:51548935-51548954 | None:intergenic | 40.0% | |
| AATTTGAGGGAAGAGGGTTA+AGG | + | chr4.1:51550003-51550022 | None:intergenic | 40.0% | |
| AGAACATCAGCAGGAATCTT+TGG | + | chr4.1:51550090-51550109 | None:intergenic | 40.0% | |
| ATACTGAATGCAAGACCACA+AGG | - | chr4.1:51549794-51549813 | MS.gene51367:CDS | 40.0% | |
| ATAGACATTGAAGTCGGTCT+TGG | - | chr4.1:51548878-51548897 | MS.gene51367:CDS | 40.0% | |
| ATATTCCTGGTCCCTAATAC+CGG | + | chr4.1:51548422-51548441 | None:intergenic | 40.0% | |
| ATGTCATTCCATCAATGTGG+AGG | - | chr4.1:51548307-51548326 | MS.gene51367:CDS | 40.0% | |
| ATTTGAGGGAAGAGGGTTAA+GGG | + | chr4.1:51550002-51550021 | None:intergenic | 40.0% | |
| CAAAGTTCAACTCACCTCAA+TGG | + | chr4.1:51548491-51548510 | None:intergenic | 40.0% | |
| CATCAATGTGGAGGAAATGT+AGG | - | chr4.1:51548316-51548335 | MS.gene51367:CDS | 40.0% | |
| CATTGAACAAAAGGGACCTA+AGG | - | chr4.1:51548213-51548232 | MS.gene51367:CDS | 40.0% | |
| CGATTGGTGTAGAAGATATC+GGG | + | chr4.1:51548397-51548416 | None:intergenic | 40.0% | |
| CTACATTTCCTCCACATTGA+TGG | + | chr4.1:51548318-51548337 | None:intergenic | 40.0% | |
| CTGGAGAAAATGCACTTTCA+AGG | - | chr4.1:51549744-51549763 | MS.gene51367:CDS | 40.0% | |
| GACCAATGATATAGATCGGA+AGG | + | chr4.1:51548627-51548646 | None:intergenic | 40.0% | |
| GATCACCATGATTCAGCAAT+TGG | + | chr4.1:51549257-51549276 | None:intergenic | 40.0% | |
| GCGATTGGTGTAGAAGATAT+CGG | + | chr4.1:51548398-51548417 | None:intergenic | 40.0% | |
| GCTGTTCTTCCATGAAAGAT+GGG | + | chr4.1:51548469-51548488 | None:intergenic | 40.0% | |
| GCTTCATTAAGAACATCAGC+AGG | + | chr4.1:51550099-51550118 | None:intergenic | 40.0% | |
| GGTATCCATCTCTATCATCA+AGG | + | chr4.1:51549489-51549508 | None:intergenic | 40.0% | |
| TCAATGTGGAGGAAATGTAG+GGG | - | chr4.1:51548318-51548337 | MS.gene51367:CDS | 40.0% | |
| TGGGGGATCATTGAACAAAA+GGG | - | chr4.1:51548205-51548224 | MS.gene51367:CDS | 40.0% | |
| TGTTATGATCGATGTCTGGT+GGG | - | chr4.1:51548186-51548205 | MS.gene51367:intron | 40.0% | |
| TTTGGTCCTGATCGCTTTAA+CGG | + | chr4.1:51550072-51550091 | None:intergenic | 40.0% | |
| ! | ACTCCATACATCCGAAGTTT+TGG | + | chr4.1:51549839-51549858 | None:intergenic | 40.0% |
| ! | CTAATTTGACTTTGCATCCC+AGG | + | chr4.1:51549308-51549327 | None:intergenic | 40.0% |
| ! | GACCCTGAAAAGTACAATCA+TGG | - | chr4.1:51550039-51550058 | MS.gene51367:intron | 40.0% |
| !! | ATGTATGAACAGGTACTGAG+TGG | - | chr4.1:51549695-51549714 | MS.gene51367:CDS | 40.0% |
| !! | ATGTCTGTTTCTGAATCCCA+GGG | + | chr4.1:51550144-51550163 | None:intergenic | 40.0% |
| !! | TAAAGGTCTCTGGAATTCAC+TGG | - | chr4.1:51549413-51549432 | MS.gene51367:intron | 40.0% |
| !!! | CATACATCCGAAGTTTTGGA+GGG | + | chr4.1:51549835-51549854 | None:intergenic | 40.0% |
| AAAATTACTGCACCCGATCC+GGG | - | chr4.1:51548741-51548760 | MS.gene51367:intron | 45.0% | |
| AATGTCTTCGAAGACCCAGA+TGG | - | chr4.1:51548118-51548137 | MS.gene51367:intron | 45.0% | |
| ACCTGAAACTCTCCAATTCC+AGG | + | chr4.1:51548959-51548978 | None:intergenic | 45.0% | |
| ACCTGCTGAACAAGTTTCTG+TGG | + | chr4.1:51549610-51549629 | None:intergenic | 45.0% | |
| ATACCACCGTTAAAGCGATC+AGG | - | chr4.1:51550063-51550082 | MS.gene51367:intron | 45.0% | |
| ATCCTGCAATTTGAGGGAAG+AGG | + | chr4.1:51550010-51550029 | None:intergenic | 45.0% | |
| ATCTTCTACACCAATCGCTC+CGG | - | chr4.1:51548400-51548419 | MS.gene51367:CDS | 45.0% | |
| CACCAATGCTCAGATATTCC+TGG | + | chr4.1:51548435-51548454 | None:intergenic | 45.0% | |
| CCTCCAAAACTTCGGATGTA+TGG | - | chr4.1:51549833-51549852 | MS.gene51367:CDS | 45.0% | |
| CCTTGATTCTGCGGATAAGA+CGG | + | chr4.1:51548926-51548945 | None:intergenic | 45.0% | |
| CTGGTAGTTCCCATTCAGAA+TGG | + | chr4.1:51549128-51549147 | None:intergenic | 45.0% | |
| CTTATCCGCAGAATCAAGGA+TGG | - | chr4.1:51548927-51548946 | MS.gene51367:CDS | 45.0% | |
| CTTGATTCTGCGGATAAGAC+GGG | + | chr4.1:51548925-51548944 | None:intergenic | 45.0% | |
| GAAAATTACTGCACCCGATC+CGG | - | chr4.1:51548740-51548759 | MS.gene51367:intron | 45.0% | |
| GACCAGGAATATCTGAGCAT+TGG | - | chr4.1:51548430-51548449 | MS.gene51367:intron | 45.0% | |
| GCACTCCAATCATACTCCTT+AGG | + | chr4.1:51548232-51548251 | None:intergenic | 45.0% | |
| GGATGGCAATTTCCTGGAAT+TGG | - | chr4.1:51548944-51548963 | MS.gene51367:CDS | 45.0% | |
| GGCACATACCTTACTGAGAA+AGG | - | chr4.1:51549204-51549223 | MS.gene51367:CDS | 45.0% | |
| GGCTGTTCTTCCATGAAAGA+TGG | + | chr4.1:51548470-51548489 | None:intergenic | 45.0% | |
| GGTAAAGATGCATGCAGATC+AGG | - | chr4.1:51549925-51549944 | MS.gene51367:CDS | 45.0% | |
| GTGGGGGATCATTGAACAAA+AGG | - | chr4.1:51548204-51548223 | MS.gene51367:CDS | 45.0% | |
| GTGTTATGATCGATGTCTGG+TGG | - | chr4.1:51548185-51548204 | MS.gene51367:intron | 45.0% | |
| GTTATGATCGATGTCTGGTG+GGG | - | chr4.1:51548187-51548206 | MS.gene51367:CDS | 45.0% | |
| TCAAGCACCCACTTTGGTAA+TGG | + | chr4.1:51548358-51548377 | None:intergenic | 45.0% | |
| TCATGGAAGAACAGCCATTG+AGG | - | chr4.1:51548474-51548493 | MS.gene51367:intron | 45.0% | |
| TCCTGCAATTTGAGGGAAGA+GGG | + | chr4.1:51550009-51550028 | None:intergenic | 45.0% | |
| TCCTGGAATTGGAGAGTTTC+AGG | - | chr4.1:51548955-51548974 | MS.gene51367:CDS | 45.0% | |
| TTATGATCGATGTCTGGTGG+GGG | - | chr4.1:51548188-51548207 | MS.gene51367:CDS | 45.0% | |
| TTTGAGGGAAGAGGGTTAAG+GGG | + | chr4.1:51550001-51550020 | None:intergenic | 45.0% | |
| ! | ACCACAGAAACTTGTTCAGC+AGG | - | chr4.1:51549606-51549625 | MS.gene51367:intron | 45.0% |
| ! | AGGGACCTAAGGAGTATGAT+TGG | - | chr4.1:51548224-51548243 | MS.gene51367:CDS | 45.0% |
| ! | AGTAACTAATGGACCCGGAT+CGG | + | chr4.1:51548757-51548776 | None:intergenic | 45.0% |
| ! | CAAGCACCCACTTTGGTAAT+GGG | + | chr4.1:51548357-51548376 | None:intergenic | 45.0% |
| ! | CCACAAGGTGTCAACAAAGA+CGG | - | chr4.1:51549809-51549828 | MS.gene51367:CDS | 45.0% |
| !! | ACGGTGTTATGATCGATGTC+TGG | - | chr4.1:51548182-51548201 | MS.gene51367:intron | 45.0% |
| !! | CATGTCTGTTTCTGAATCCC+AGG | + | chr4.1:51550145-51550164 | None:intergenic | 45.0% |
| !! | CCATACATCCGAAGTTTTGG+AGG | + | chr4.1:51549836-51549855 | None:intergenic | 45.0% |
| !! | TATGAACAGGTACTGAGTGG+AGG | - | chr4.1:51549698-51549717 | MS.gene51367:CDS | 45.0% |
| !! | TGTCTGTTTCTGAATCCCAG+GGG | + | chr4.1:51550143-51550162 | None:intergenic | 45.0% |
| AAGACGGCCCTCCAAAACTT+CGG | - | chr4.1:51549825-51549844 | MS.gene51367:CDS | 50.0% | |
| ACACCAATCGCTCCGGTATT+AGG | - | chr4.1:51548407-51548426 | MS.gene51367:CDS | 50.0% | |
| ACCCTCTTCCCTCAAATTGC+AGG | - | chr4.1:51550005-51550024 | MS.gene51367:CDS | 50.0% | |
| CACCAATCGCTCCGGTATTA+GGG | - | chr4.1:51548408-51548427 | MS.gene51367:intron | 50.0% | |
| CCAAAGTGGGTGCTTGACAT+CGG | - | chr4.1:51548361-51548380 | MS.gene51367:CDS | 50.0% | |
| CCGTCTTATCCGCAGAATCA+AGG | - | chr4.1:51548923-51548942 | MS.gene51367:CDS | 50.0% | |
| CCGTCTTTGTTGACACCTTG+TGG | + | chr4.1:51549812-51549831 | None:intergenic | 50.0% | |
| GTGAGTTCTGCAGCGTGATT+CGG | + | chr4.1:51549451-51549470 | None:intergenic | 50.0% | |
| GTTGTGTGACGCAGTAACTG+CGG | + | chr4.1:51548592-51548611 | None:intergenic | 50.0% | |
| GTTTCTGAATCCCAGGGGAA+CGG | + | chr4.1:51550138-51550157 | None:intergenic | 50.0% | |
| ! | GTAACTAATGGACCCGGATC+GGG | + | chr4.1:51548756-51548775 | None:intergenic | 50.0% |
| !! | AACAGGTACTGAGTGGAGGT+TGG | - | chr4.1:51549702-51549721 | MS.gene51367:CDS | 50.0% |
| !! | AGGTCTCTGGAATTCACTGG+TGG | - | chr4.1:51549416-51549435 | MS.gene51367:intron | 50.0% |
| !! | GAGTGCTGGCCATTCTGAAT+GGG | - | chr4.1:51549116-51549135 | MS.gene51367:intron | 50.0% |
| CCGATGTCAAGCACCCACTT+TGG | + | chr4.1:51548364-51548383 | None:intergenic | 55.0% | |
| GGGTATCTGAGTTCTCCTGC+TGG | + | chr4.1:51548905-51548924 | None:intergenic | 55.0% | |
| GGTCCTGATCGCTTTAACGG+TGG | + | chr4.1:51550069-51550088 | None:intergenic | 55.0% | |
| GTCCCTAATACCGGAGCGAT+TGG | + | chr4.1:51548413-51548432 | None:intergenic | 55.0% | |
| TGGGAACTACCAGATGACGC+TGG | - | chr4.1:51549135-51549154 | MS.gene51367:intron | 55.0% | |
| TTGTACGTGCCAGCGTCATC+TGG | + | chr4.1:51549147-51549166 | None:intergenic | 55.0% | |
| !! | CGAGTGCTGGCCATTCTGAA+TGG | - | chr4.1:51549115-51549134 | MS.gene51367:intron | 55.0% |
| AAAGCAGCTGCAGCGAGTGC+TGG | - | chr4.1:51549102-51549121 | MS.gene51367:intron | 60.0% | |
| CACGCTGCAGAACTCACTGC+TGG | - | chr4.1:51549454-51549473 | MS.gene51367:intron | 60.0% | |
| CTCGTGCAACTACGAGCAGC+AGG | - | chr4.1:51548154-51548173 | MS.gene51367:intron | 60.0% | |
| GAAGTCGGTCTTGGTCCAGC+AGG | - | chr4.1:51548887-51548906 | MS.gene51367:CDS | 60.0% | |
| TCGCTCCGGTATTAGGGACC+AGG | - | chr4.1:51548414-51548433 | MS.gene51367:intron | 60.0% | |
| TCTGAATCCCAGGGGAACGG+CGG | + | chr4.1:51550135-51550154 | None:intergenic | 60.0% | |
| AGCCAATACCGCCGTTCCCC+TGG | - | chr4.1:51550124-51550143 | MS.gene51367:intron | 65.0% | |
| GCCAATACCGCCGTTCCCCT+GGG | - | chr4.1:51550125-51550144 | MS.gene51367:intron | 65.0% | |
| TCCCAGGGGAACGGCGGTAT+TGG | + | chr4.1:51550129-51550148 | None:intergenic | 65.0% | |
| !! | CTACGAGCAGCAGGCGTCGA+CGG | - | chr4.1:51548163-51548182 | MS.gene51367:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 51547954 | 51550179 | 51547954 | ID=MS.gene51367 |
| chr4.1 | mRNA | 51547954 | 51550179 | 51547954 | ID=MS.gene51367.t1;Parent=MS.gene51367 |
| chr4.1 | exon | 51550171 | 51550179 | 51550171 | ID=MS.gene51367.t1.exon1;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51550171 | 51550179 | 51550171 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51549638 | 51550036 | 51549638 | ID=MS.gene51367.t1.exon2;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51549638 | 51550036 | 51549638 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51549157 | 51549321 | 51549157 | ID=MS.gene51367.t1.exon3;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51549157 | 51549321 | 51549157 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51548798 | 51549061 | 51548798 | ID=MS.gene51367.t1.exon4;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51548798 | 51549061 | 51548798 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51548506 | 51548715 | 51548506 | ID=MS.gene51367.t1.exon5;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51548506 | 51548715 | 51548506 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51548187 | 51548426 | 51548187 | ID=MS.gene51367.t1.exon6;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51548187 | 51548426 | 51548187 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| chr4.1 | exon | 51547954 | 51548106 | 51547954 | ID=MS.gene51367.t1.exon7;Parent=MS.gene51367.t1 |
| chr4.1 | CDS | 51547954 | 51548106 | 51547954 | ID=cds.MS.gene51367.t1;Parent=MS.gene51367.t1 |
| Gene Sequence |
| Protein sequence |
