Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51633.t1 | XP_013458835.1 | 96.5 | 804 | 28 | 0 | 1 | 804 | 1 | 804 | 0.00E+00 | 1584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51633.t1 | Q9SJ20 | 81.0 | 816 | 143 | 2 | 1 | 804 | 1 | 816 | 0.0e+00 | 1383.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51633.t1 | A0A072UTF3 | 96.5 | 804 | 28 | 0 | 1 | 804 | 1 | 804 | 0.0e+00 | 1584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51633 | MS.gene77617 | PPI |
| MS.gene51633 | MS.gene020558 | PPI |
| MS.gene51633 | MS.gene073967 | PPI |
| MS.gene51633 | MS.gene92155 | PPI |
| MS.gene039012 | MS.gene51633 | PPI |
| MS.gene51633 | MS.gene007306 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51633.t1 | MTR_3g009480 | 96.517 | 804 | 28 | 0 | 1 | 804 | 1 | 804 | 0.0 | 1642 |
| MS.gene51633.t1 | MTR_8g092510 | 94.110 | 815 | 34 | 2 | 1 | 804 | 1 | 812 | 0.0 | 1612 |
| MS.gene51633.t1 | MTR_8g092500 | 82.759 | 58 | 10 | 0 | 42 | 99 | 12 | 69 | 7.80e-26 | 103 |
| MS.gene51633.t1 | MTR_8g092500 | 76.786 | 56 | 13 | 0 | 203 | 258 | 69 | 124 | 2.42e-20 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51633.t1 | AT2G21790 | 81.005 | 816 | 143 | 2 | 1 | 804 | 1 | 816 | 0.0 | 1431 |
Find 192 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGATATATTTGACTTCT+TGG | 0.169061 | 3.4:-4492304 | MS.gene51633:CDS |
| TTGGGTGCCTGATCTCTTTA+TGG | 0.175397 | 3.4:-4492223 | MS.gene51633:CDS |
| TTAACAGATAAGACCTTTCT+AGG | 0.217798 | 3.4:+4492769 | None:intergenic |
| TCAGTTGAGTAGTTGCTTCT+TGG | 0.230831 | 3.4:-4492580 | MS.gene51633:CDS |
| GCAAAAGATATTGGTTAATA+TGG | 0.246409 | 3.4:-4491101 | MS.gene51633:CDS |
| GAAAATTACGGATGCATAAT+CGG | 0.257386 | 3.4:+4493221 | None:intergenic |
| GTGGGATTGGGGTGCACTTC+GGG | 0.263837 | 3.4:-4491428 | MS.gene51633:CDS |
| TGAAGAATTCCCTTGCTTAC+AGG | 0.276160 | 3.4:+4491484 | None:intergenic |
| ACCTGGTTTGGCAGATTGTT+GGG | 0.280285 | 3.4:-4492151 | MS.gene51633:CDS |
| ACCCATTGGTATTGGAGTTC+AGG | 0.293692 | 3.4:-4491665 | MS.gene51633:CDS |
| TCCCTCCAATTTGTGGGATT+GGG | 0.296736 | 3.4:-4491440 | MS.gene51633:CDS |
| CTCCCTCCAATTTGTGGGAT+TGG | 0.303419 | 3.4:-4491441 | MS.gene51633:CDS |
| TCTTCACGATTTGACTGAAA+TGG | 0.304516 | 3.4:-4491239 | MS.gene51633:CDS |
| GGAGATCAAGCAAAAGATAT+TGG | 0.315716 | 3.4:-4491110 | MS.gene51633:CDS |
| TTTCTGTTGGACTTGTATAC+TGG | 0.326666 | 3.4:+4491920 | None:intergenic |
| GAAAAGCAACCAGCAGAATC+TGG | 0.327390 | 3.4:-4491980 | MS.gene51633:CDS |
| TCATCTGCCTCCTTCAACTT+AGG | 0.334668 | 3.4:+4490881 | None:intergenic |
| GACCTTTCTGCAGTTTCGAC+TGG | 0.335612 | 3.4:+4491703 | None:intergenic |
| GTGCTTCATTGGGGCAGAAC+AGG | 0.346214 | 3.4:+4492172 | None:intergenic |
| CGGCACAGACCCATTGGTAT+TGG | 0.349426 | 3.4:-4491673 | MS.gene51633:CDS |
| TGCACCCCAATCCCACAAAT+TGG | 0.350482 | 3.4:+4491435 | None:intergenic |
| CACCTGGTTTGGCAGATTGT+TGG | 0.366008 | 3.4:-4492152 | MS.gene51633:CDS |
| GCCAAACCAGGTGCTTCATT+GGG | 0.366941 | 3.4:+4492162 | None:intergenic |
| TTGAAGTCACAGATAGAAAC+TGG | 0.367181 | 3.4:-4492039 | MS.gene51633:CDS |
| CTTCACGATTTGACTGAAAT+GGG | 0.371085 | 3.4:-4491238 | MS.gene51633:CDS |
| TTGTTTAACTGTTGAGCCTC+TGG | 0.375695 | 3.4:+4491598 | None:intergenic |
| ACTACCGCTATAAGTTTCAT+AGG | 0.377693 | 3.4:+4491507 | None:intergenic |
| TGCCAAACCAGGTGCTTCAT+TGG | 0.378584 | 3.4:+4492161 | None:intergenic |
| CCGCGTTATGTAAGAGATAA+GGG | 0.378983 | 3.4:-4491865 | MS.gene51633:CDS |
| GCATCTACCAGTCAAATTCT+TGG | 0.379695 | 3.4:-4491349 | MS.gene51633:CDS |
| TTGTAGATATTAGAAGTATA+TGG | 0.388878 | 3.4:+4491307 | None:intergenic |
| CCCCAATGAAGCACCTGGTT+TGG | 0.394351 | 3.4:-4492163 | MS.gene51633:CDS |
| AAGTCATATACAAAACTGTT+TGG | 0.399108 | 3.4:-4491132 | MS.gene51633:CDS |
| CAACTTAGGTTGATCTTCAA+TGG | 0.403093 | 3.4:+4490895 | None:intergenic |
| TGGTCAAAGGGTTTGAAGAC+TGG | 0.404567 | 3.4:-4490980 | MS.gene51633:CDS |
| CATGAAGAATGCGGCTCGAT+TGG | 0.412162 | 3.4:-4492847 | MS.gene51633:CDS |
| TACTGCACGTTATGTTGATC+AGG | 0.416179 | 3.4:-4492376 | MS.gene51633:CDS |
| CCCATTGGTATTGGAGTTCA+GGG | 0.416868 | 3.4:-4491664 | MS.gene51633:CDS |
| CAACTGAGGTCTAGGTGTTC+CGG | 0.419416 | 3.4:+4492596 | None:intergenic |
| AAAATTACGGATGCATAATC+GGG | 0.422737 | 3.4:+4493222 | None:intergenic |
| AGTCATATACAAAACTGTTT+GGG | 0.426393 | 3.4:-4491131 | MS.gene51633:CDS |
| CTTCTTAACAGTTTCAGAAA+AGG | 0.427555 | 3.4:+4492908 | None:intergenic |
| ATAGTGAGATAGTCTATGAT+AGG | 0.427891 | 3.4:-4492824 | MS.gene51633:CDS |
| TGTGACTCCCTCCAATTTGT+GGG | 0.428684 | 3.4:-4491446 | MS.gene51633:CDS |
| ACTTTCTGAGCGACTAAAAC+AGG | 0.433930 | 3.4:+4493330 | None:intergenic |
| TCTTATCTGTTAAAAGTTGA+AGG | 0.442873 | 3.4:-4492759 | MS.gene51633:CDS |
| TCTCATCAATCTAAGCTTGT+TGG | 0.444163 | 3.4:-4491829 | MS.gene51633:CDS |
| CCCTCCAATTTGTGGGATTG+GGG | 0.452935 | 3.4:-4491439 | MS.gene51633:CDS |
| CTTCTTGGTTTGCATGAAAG+AGG | 0.454593 | 3.4:-4492565 | MS.gene51633:CDS |
| AGTAAATCTGCTGGAGGGAT+TGG | 0.455606 | 3.4:-4492495 | MS.gene51633:CDS |
| GGAACAAACGGAACATCTAA+TGG | 0.457199 | 3.4:-4492429 | MS.gene51633:CDS |
| CTCATCAATCTAAGCTTGTT+GGG | 0.458711 | 3.4:-4491828 | MS.gene51633:CDS |
| TTGGAATTGAAAATAAATCA+TGG | 0.459190 | 3.4:-4492285 | MS.gene51633:CDS |
| TGGTAGATGCAGTTGGCATA+GGG | 0.460342 | 3.4:+4491362 | None:intergenic |
| TGCCCGTGGTAGTTACATTC+GGG | 0.461603 | 3.4:-4492451 | MS.gene51633:CDS |
| ACTGTGGAATCCTGCACTTA+AGG | 0.461877 | 3.4:-4491215 | MS.gene51633:CDS |
| GTGTGACTCCCTCCAATTTG+TGG | 0.463050 | 3.4:-4491447 | MS.gene51633:CDS |
| GGGGATTTATGATACATTGA+AGG | 0.466284 | 3.4:-4492532 | MS.gene51633:CDS |
| CATGAAAGAGGATAGTATTG+AGG | 0.467618 | 3.4:-4492553 | MS.gene51633:CDS |
| CATCACTTGCAGCTCGTGTT+CGG | 0.469357 | 3.4:+4490945 | None:intergenic |
| TTGGATTCAAAACCCTAGAA+AGG | 0.474503 | 3.4:-4492782 | MS.gene51633:CDS |
| TGTGGGATTGGGGTGCACTT+CGG | 0.478406 | 3.4:-4491429 | MS.gene51633:CDS |
| GGAGCAGAGGCTCTAGTAAT+CGG | 0.485766 | 3.4:-4491807 | MS.gene51633:CDS |
| CTGGTAGATGCAGTTGGCAT+AGG | 0.486502 | 3.4:+4491361 | None:intergenic |
| TGTGAATTAGCTGCAAAAGA+AGG | 0.487389 | 3.4:-4491532 | MS.gene51633:CDS |
| GTGCCCGTGGTAGTTACATT+CGG | 0.488383 | 3.4:-4492452 | MS.gene51633:CDS |
| ACCGCGTTATGTAAGAGATA+AGG | 0.490094 | 3.4:-4491866 | MS.gene51633:CDS |
| GACCTCAACATATGATAATG+AGG | 0.490912 | 3.4:-4492722 | MS.gene51633:CDS |
| GGTATCAACAGTGAACTTGA+TGG | 0.492813 | 3.4:+4490922 | None:intergenic |
| GCACACCATCTGTGCCATCT+TGG | 0.493955 | 3.4:+4490835 | None:intergenic |
| GAGCTCGGAGCGATGGGGAA+TGG | 0.495090 | 3.4:-4492197 | MS.gene51633:CDS |
| GGTCAAAGGGTTTGAAGACT+GGG | 0.500162 | 3.4:-4490979 | MS.gene51633:CDS |
| TTGCTGTGTACTTGGAGCCA+TGG | 0.501413 | 3.4:-4492329 | MS.gene51633:CDS |
| CAACTACTCAACTGAGGTCT+AGG | 0.502455 | 3.4:+4492588 | None:intergenic |
| TGGAAAGAGCTCGGAGCGAT+GGG | 0.504046 | 3.4:-4492203 | MS.gene51633:CDS |
| TGTTGATTCAGTTGGCTGGT+AGG | 0.505376 | 3.4:-4492968 | MS.gene51633:intron |
| CTACCGCTATAAGTTTCATA+GGG | 0.506721 | 3.4:+4491508 | None:intergenic |
| CCCTGAACTCCAATACCAAT+GGG | 0.507374 | 3.4:+4491664 | None:intergenic |
| TAATTGTGCCCAGATTCTGC+TGG | 0.508224 | 3.4:+4491971 | None:intergenic |
| GGTTCGTTTCGACAAGATAA+CGG | 0.508783 | 3.4:-4493400 | MS.gene51633:CDS |
| ATGGAAAGAGCTCGGAGCGA+TGG | 0.509824 | 3.4:-4492204 | MS.gene51633:CDS |
| GGAGTCACACCCCACATGTC+AGG | 0.510046 | 3.4:+4491460 | None:intergenic |
| ACCTTTCTGCAGTTTCGACT+GGG | 0.510773 | 3.4:+4491704 | None:intergenic |
| TGCATAATCGGGGTGGTTAG+CGG | 0.511312 | 3.4:+4493233 | None:intergenic |
| TTCTGCCCCAATGAAGCACC+TGG | 0.511533 | 3.4:-4492168 | MS.gene51633:CDS |
| ATGATAATGAGGGTTTCTGT+TGG | 0.513641 | 3.4:-4492711 | MS.gene51633:CDS |
| TTACACACAGCAGTTTCTGT+TGG | 0.517348 | 3.4:+4491907 | None:intergenic |
| ATGAAAGAGGATAGTATTGA+GGG | 0.520773 | 3.4:-4492552 | MS.gene51633:CDS |
| GCTCTTTCCATAAAGAGATC+AGG | 0.521910 | 3.4:+4492216 | None:intergenic |
| AGTTACATTCGGGGAACAAA+CGG | 0.524482 | 3.4:-4492441 | MS.gene51633:CDS |
| GTTATTGCCAAGAATTTGAC+TGG | 0.525519 | 3.4:+4491342 | None:intergenic |
| ATAATCTTATCCTTAAGTGC+AGG | 0.526709 | 3.4:+4491205 | None:intergenic |
| TGAAGATCAACCTAAGTTGA+AGG | 0.527736 | 3.4:-4490891 | MS.gene51633:CDS |
| CATGCCGGCGGCGGTTTCAG+CGG | 0.529513 | 3.4:+4493257 | None:intergenic |
| GGCAGATGATGCTGAGAATG+AGG | 0.529942 | 3.4:-4490867 | MS.gene51633:CDS |
| CCTGGTTTGGCAGATTGTTG+GGG | 0.532035 | 3.4:-4492150 | MS.gene51633:CDS |
| GTTAGCGGTCATGCCGGCGG+CGG | 0.536157 | 3.4:+4493248 | None:intergenic |
| AAAAGCAACCAGCAGAATCT+GGG | 0.538023 | 3.4:-4491979 | MS.gene51633:CDS |
| TGCCATTCCTAGTAGTATGA+AGG | 0.541047 | 3.4:+4491630 | None:intergenic |
| TCATTGAACACACGAAGCAT+TGG | 0.544001 | 3.4:+4492399 | None:intergenic |
| GCTGATACCTTCATACTACT+AGG | 0.545879 | 3.4:-4491637 | MS.gene51633:CDS |
| TCCCCGAATGTAACTACCAC+GGG | 0.547310 | 3.4:+4492449 | None:intergenic |
| AACTTGCGGCACAGACCCAT+TGG | 0.547601 | 3.4:-4491679 | MS.gene51633:CDS |
| AGGTTGATCTTCAATGGCAG+AGG | 0.549832 | 3.4:+4490901 | None:intergenic |
| AGGTTGAAGAAACTCAGTTA+CGG | 0.550367 | 3.4:-4493375 | MS.gene51633:CDS |
| TAACAGATAAGACCTTTCTA+GGG | 0.551860 | 3.4:+4492770 | None:intergenic |
| TCTAAGCTTGTTGGGAGCAG+AGG | 0.552144 | 3.4:-4491820 | MS.gene51633:CDS |
| GCTGTCATTAGTAAATCTGC+TGG | 0.558625 | 3.4:-4492504 | MS.gene51633:CDS |
| TTCTGAAACTGTTAAGAAGG+CGG | 0.559005 | 3.4:-4492904 | MS.gene51633:CDS |
| CCCCAACAATCTGCCAAACC+AGG | 0.559209 | 3.4:+4492150 | None:intergenic |
| TCTGTTAAAAGTTGAAGGAG+TGG | 0.561302 | 3.4:-4492754 | MS.gene51633:CDS |
| ATCATTACATGTCTCAGAGA+TGG | 0.562165 | 3.4:-4492650 | MS.gene51633:CDS |
| ATTTGACTGGTAGATGCAGT+TGG | 0.562931 | 3.4:+4491355 | None:intergenic |
| AAAGAGATCAGGCACCCAAA+GGG | 0.564159 | 3.4:+4492227 | None:intergenic |
| TGCTTCATTGGGGCAGAACA+GGG | 0.566323 | 3.4:+4492173 | None:intergenic |
| GATAAGATTATCTATGACAA+TGG | 0.569436 | 3.4:-4491193 | MS.gene51633:CDS |
| TAGTGAGATAGTCTATGATA+GGG | 0.569771 | 3.4:-4492823 | MS.gene51633:CDS |
| TAGCGGTAGTCCTGTAAGCA+AGG | 0.570043 | 3.4:-4491494 | MS.gene51633:CDS |
| GGTGTGGTTTCAACTTCCAC+AGG | 0.570169 | 3.4:+4490784 | None:intergenic |
| GGGGTGGTTAGCGGTCATGC+CGG | 0.571238 | 3.4:+4493242 | None:intergenic |
| TGATATCAAAGACGGGTGTA+CGG | 0.571641 | 3.4:-4491402 | MS.gene51633:CDS |
| TTGTTCAAGCACAGAGTCTG+TGG | 0.573288 | 3.4:-4492071 | MS.gene51633:CDS |
| AATTCTTCAGCCTGACATGT+GGG | 0.573350 | 3.4:-4491470 | MS.gene51633:CDS |
| ATTGAAAATAAATCATGGAA+AGG | 0.576131 | 3.4:-4492280 | MS.gene51633:CDS |
| ATCTCTTTATGGAAAGAGCT+CGG | 0.576641 | 3.4:-4492212 | MS.gene51633:CDS |
| GTTTGTGCCGGCGTTTACAA+AGG | 0.577884 | 3.4:-4493309 | MS.gene51633:CDS |
| GTCGCTCAGAAAGTTTGTGC+CGG | 0.580015 | 3.4:-4493321 | MS.gene51633:CDS |
| ACCCCAATCCCACAAATTGG+AGG | 0.580755 | 3.4:+4491438 | None:intergenic |
| ACCCTGAACTCCAATACCAA+TGG | 0.583702 | 3.4:+4491663 | None:intergenic |
| CACTTGCAGCTCGTGTTCGG+AGG | 0.584028 | 3.4:+4490948 | None:intergenic |
| ACTGCACGTTATGTTGATCA+GGG | 0.592882 | 3.4:-4492375 | MS.gene51633:CDS |
| TCGGGAGATGATATCAAAGA+CGG | 0.597011 | 3.4:-4491410 | MS.gene51633:CDS |
| TGATACCAAGATGGCACAGA+TGG | 0.597252 | 3.4:-4490840 | MS.gene51633:CDS |
| AAAAGTTGAAGGAGTGGTTG+TGG | 0.599235 | 3.4:-4492748 | MS.gene51633:CDS |
| CCCTTATCTCTTACATAACG+CGG | 0.600722 | 3.4:+4491865 | None:intergenic |
| GTGGTTAGCGGTCATGCCGG+CGG | 0.600952 | 3.4:+4493245 | None:intergenic |
| CCCCAATCCCACAAATTGGA+GGG | 0.603150 | 3.4:+4491439 | None:intergenic |
| AGAGATGAGTGTACGTCCTG+TGG | 0.603838 | 3.4:-4490800 | MS.gene51633:CDS |
| ACCCTCATTATCATATGTTG+AGG | 0.604412 | 3.4:+4492720 | None:intergenic |
| CGGGAGATGATATCAAAGAC+GGG | 0.605097 | 3.4:-4491409 | MS.gene51633:CDS |
| TACCTTCATACTACTAGGAA+TGG | 0.607015 | 3.4:-4491632 | MS.gene51633:CDS |
| TGAAATTATCATGAAGAATG+CGG | 0.608901 | 3.4:-4492856 | MS.gene51633:CDS |
| TGACCAAGCATGAAAATGCA+AGG | 0.609918 | 3.4:+4490997 | None:intergenic |
| TAAAGAGATCAGGCACCCAA+AGG | 0.610062 | 3.4:+4492226 | None:intergenic |
| TGCACGTTATGTTGATCAGG+GGG | 0.610861 | 3.4:-4492373 | MS.gene51633:CDS |
| GAAGAGAGACGGTCGTCAAG+AGG | 0.611484 | 3.4:-4493424 | MS.gene51633:CDS |
| TTAGCCGCTGAAACCGCCGC+CGG | 0.616264 | 3.4:-4493261 | MS.gene51633:CDS |
| ACCCAGTCGAAACTGCAGAA+AGG | 0.616552 | 3.4:-4491705 | MS.gene51633:CDS |
| TTAGATTGATGAGACTCCAC+AGG | 0.616817 | 3.4:+4491838 | None:intergenic |
| GTCATTAGTAAATCTGCTGG+AGG | 0.617415 | 3.4:-4492501 | MS.gene51633:CDS |
| GGTTTCTGTTGGAATTCACA+AGG | 0.619618 | 3.4:-4492700 | MS.gene51633:CDS |
| ACTAGGAGAGGTTACTTCTG+TGG | 0.620174 | 3.4:-4491767 | MS.gene51633:CDS |
| AAGAGATAAGGGTTTGCCTG+TGG | 0.620674 | 3.4:-4491854 | MS.gene51633:CDS |
| GAATTCTTCAGCCTGACATG+TGG | 0.621173 | 3.4:-4491471 | MS.gene51633:CDS |
| ATTCTTCAGCCTGACATGTG+GGG | 0.624402 | 3.4:-4491469 | MS.gene51633:CDS |
| AGCGGTAGTCCTGTAAGCAA+GGG | 0.628820 | 3.4:-4491493 | MS.gene51633:CDS |
| TACAATCGCAGAGTGCTAAG+TGG | 0.632548 | 3.4:-4491289 | MS.gene51633:CDS |
| ACCTCAACATATGATAATGA+GGG | 0.634892 | 3.4:-4492721 | MS.gene51633:CDS |
| GCCCGTGGTAGTTACATTCG+GGG | 0.635773 | 3.4:-4492450 | MS.gene51633:CDS |
| CCAAACCAGGTGCTTCATTG+GGG | 0.636999 | 3.4:+4492163 | None:intergenic |
| CTGCAGAAAGGTCAAACTTG+CGG | 0.641053 | 3.4:-4491693 | MS.gene51633:CDS |
| ATGTACGTTGTGAAGAGAGA+CGG | 0.641716 | 3.4:-4493435 | MS.gene51633:CDS |
| GTTAATATGGCTGTTGATCG+AGG | 0.643154 | 3.4:-4491088 | MS.gene51633:CDS |
| TTCCCCGAATGTAACTACCA+CGG | 0.643519 | 3.4:+4492448 | None:intergenic |
| TGAGGACGATGATACCAAGA+TGG | 0.643523 | 3.4:-4490849 | MS.gene51633:CDS |
| GGCTAATTCATCAAGTTGAG+TGG | 0.644215 | 3.4:+4493278 | None:intergenic |
| GGTAGATGCAGTTGGCATAG+GGG | 0.644273 | 3.4:+4491363 | None:intergenic |
| TACACATCATCAGCAATCAA+CGG | 0.647516 | 3.4:+4492879 | None:intergenic |
| AAATCTGCACAAGAACACAC+TGG | 0.648777 | 3.4:-4492934 | MS.gene51633:CDS |
| GAGAGACGGTCGTCAAGAGG+CGG | 0.654678 | 3.4:-4493421 | MS.gene51633:CDS |
| TCAAATATATCAGCATGCCA+TGG | 0.655929 | 3.4:+4492312 | None:intergenic |
| GTTCACAACATACGTGCCCG+TGG | 0.656567 | 3.4:-4492465 | MS.gene51633:CDS |
| GCGGTAGTGCAATTGATGCA+AGG | 0.658257 | 3.4:+4491884 | None:intergenic |
| TAATTCATCAAGTTGAGTGG+TGG | 0.658888 | 3.4:+4493281 | None:intergenic |
| GTTCCGGCGTTGAAAAGTGT+AGG | 0.659447 | 3.4:+4492612 | None:intergenic |
| AATGGCATTTGATTCACCAG+AGG | 0.671867 | 3.4:-4491614 | MS.gene51633:CDS |
| CTGCACGTTATGTTGATCAG+GGG | 0.673705 | 3.4:-4492374 | MS.gene51633:CDS |
| TCATTAGTAAATCTGCTGGA+GGG | 0.679752 | 3.4:-4492500 | MS.gene51633:CDS |
| TCAAAGCTTAAATATACACA+TGG | 0.684728 | 3.4:-4491047 | MS.gene51633:CDS |
| GGAAAGAGCTCGGAGCGATG+GGG | 0.686822 | 3.4:-4492202 | MS.gene51633:CDS |
| AGATCAACCTAAGTTGAAGG+AGG | 0.690518 | 3.4:-4490888 | MS.gene51633:CDS |
| GGTAACGCCTTTGTAAACGC+CGG | 0.692435 | 3.4:+4493302 | None:intergenic |
| TGAAAGAGGATAGTATTGAG+GGG | 0.695012 | 3.4:-4492551 | MS.gene51633:CDS |
| GGCCCCTATGAAACTTATAG+CGG | 0.706024 | 3.4:-4491511 | MS.gene51633:CDS |
| ATTTGACTGAAATGGGACTG+TGG | 0.706027 | 3.4:-4491231 | MS.gene51633:CDS |
| AGAGGCTCAACAGTTAAACA+AGG | 0.706619 | 3.4:-4491596 | MS.gene51633:CDS |
| TTACGGATGCATAATCGGGG+TGG | 0.709619 | 3.4:+4493226 | None:intergenic |
| AAGAAGCAACTACTCAACTG+AGG | 0.713107 | 3.4:+4492582 | None:intergenic |
| TACCGCTATAAGTTTCATAG+GGG | 0.734200 | 3.4:+4491509 | None:intergenic |
| AAATTACGGATGCATAATCG+GGG | 0.740153 | 3.4:+4493223 | None:intergenic |
| GCACGTTATGTTGATCAGGG+GGG | 0.745631 | 3.4:-4492372 | MS.gene51633:CDS |
| GTTTCGACAAGATAACGGCG+AGG | 0.762520 | 3.4:-4493395 | MS.gene51633:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAATTATTTTATTAAGGT+TGG | + | chr3.4:4492493-4492512 | None:intergenic | 15.0% |
| !!! | TGACATCAATTATTTTATTA+AGG | + | chr3.4:4492497-4492516 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTGAATTCTTT+TGG | - | chr3.4:4491086-4491105 | MS.gene51633:CDS | 15.0% |
| !! | AACAACAAAAAATTCATCAT+CGG | + | chr3.4:4491068-4491087 | None:intergenic | 20.0% |
| !! | ATTGAAAATAAATCATGGAA+AGG | - | chr3.4:4491948-4491967 | MS.gene51633:CDS | 20.0% |
| !! | TTGGAATTGAAAATAAATCA+TGG | - | chr3.4:4491943-4491962 | MS.gene51633:CDS | 20.0% |
| !!! | GTTTTGTTTTTGAATTGTTT+TGG | - | chr3.4:4491233-4491252 | MS.gene51633:CDS | 20.0% |
| !!! | TATTTTGACTTTGAAAAACT+AGG | - | chr3.4:4492444-4492463 | MS.gene51633:CDS | 20.0% |
| !!! | TTGTAGATATTAGAAGTATA+TGG | + | chr3.4:4492924-4492943 | None:intergenic | 20.0% |
| ! | AAGTCATATACAAAACTGTT+TGG | - | chr3.4:4493096-4493115 | MS.gene51633:intron | 25.0% |
| ! | AGTCATATACAAAACTGTTT+GGG | - | chr3.4:4493097-4493116 | MS.gene51633:intron | 25.0% |
| ! | GATAAGATTATCTATGACAA+TGG | - | chr3.4:4493035-4493054 | MS.gene51633:intron | 25.0% |
| ! | TCAAAGCTTAAATATACACA+TGG | - | chr3.4:4493181-4493200 | MS.gene51633:intron | 25.0% |
| ! | TCTTATCTGTTAAAAGTTGA+AGG | - | chr3.4:4491469-4491488 | MS.gene51633:CDS | 25.0% |
| ! | TGAAATTATCATGAAGAATG+CGG | - | chr3.4:4491372-4491391 | MS.gene51633:CDS | 25.0% |
| !! | GCAAAAGATATTGGTTAATA+TGG | - | chr3.4:4493127-4493146 | MS.gene51633:intron | 25.0% |
| !!! | AAATCCTTACATGCTTTTTA+AGG | - | chr3.4:4492212-4492231 | MS.gene51633:CDS | 25.0% |
| !!! | TTTTTAAGGATACTTGCAAT+AGG | - | chr3.4:4492226-4492245 | MS.gene51633:CDS | 25.0% |
| AAAATTACGGATGCATAATC+GGG | + | chr3.4:4491009-4491028 | None:intergenic | 30.0% | |
| ACGTTAAAGAACCCTAAAAA+AGG | + | chr3.4:4491036-4491055 | None:intergenic | 30.0% | |
| ATAATCTTATCCTTAAGTGC+AGG | + | chr3.4:4493026-4493045 | None:intergenic | 30.0% | |
| ATAGTGAGATAGTCTATGAT+AGG | - | chr3.4:4491404-4491423 | MS.gene51633:CDS | 30.0% | |
| CTTCTTAACAGTTTCAGAAA+AGG | + | chr3.4:4491323-4491342 | None:intergenic | 30.0% | |
| GAAAATTACGGATGCATAAT+CGG | + | chr3.4:4491010-4491029 | None:intergenic | 30.0% | |
| TAAAAAAGGCGGGAAAATTA+CGG | + | chr3.4:4491022-4491041 | None:intergenic | 30.0% | |
| TAACAGATAAGACCTTTCTA+GGG | + | chr3.4:4491461-4491480 | None:intergenic | 30.0% | |
| TAGTGAGATAGTCTATGATA+GGG | - | chr3.4:4491405-4491424 | MS.gene51633:CDS | 30.0% | |
| TTAAAGAACCCTAAAAAAGG+CGG | + | chr3.4:4491033-4491052 | None:intergenic | 30.0% | |
| TTAACAGATAAGACCTTTCT+AGG | + | chr3.4:4491462-4491481 | None:intergenic | 30.0% | |
| ! | ACCTCAACATATGATAATGA+GGG | - | chr3.4:4491507-4491526 | MS.gene51633:CDS | 30.0% |
| ! | ATGAAAGAGGATAGTATTGA+GGG | - | chr3.4:4491676-4491695 | MS.gene51633:CDS | 30.0% |
| ! | GTATCCTTAAAAAGCATGTA+AGG | + | chr3.4:4492219-4492238 | None:intergenic | 30.0% |
| ! | TGCTGATATATTTGACTTCT+TGG | - | chr3.4:4491924-4491943 | MS.gene51633:CDS | 30.0% |
| !! | TAATTTTCCCGCCTTTTTTA+GGG | - | chr3.4:4491022-4491041 | MS.gene51633:CDS | 30.0% |
| !!! | AGATTTATTTTACGCCCTTT+GGG | - | chr3.4:4491987-4492006 | MS.gene51633:CDS | 30.0% |
| !!! | CTTTTCTGAAACTGTTAAGA+AGG | - | chr3.4:4491321-4491340 | MS.gene51633:CDS | 30.0% |
| !!! | GATTTTGACTACGATTACTT+TGG | - | chr3.4:4491427-4491446 | MS.gene51633:CDS | 30.0% |
| !!! | TATATGACTTTTAGTTCAGC+AGG | + | chr3.4:4493086-4493105 | None:intergenic | 30.0% |
| !!! | TTGGATTTTGTTGATTCAGT+TGG | - | chr3.4:4491252-4491271 | MS.gene51633:CDS | 30.0% |
| AAATTACGGATGCATAATCG+GGG | + | chr3.4:4491008-4491027 | None:intergenic | 35.0% | |
| ACCCTCATTATCATATGTTG+AGG | + | chr3.4:4491511-4491530 | None:intergenic | 35.0% | |
| ACTACCGCTATAAGTTTCAT+AGG | + | chr3.4:4492724-4492743 | None:intergenic | 35.0% | |
| AGGTTGAAGAAACTCAGTTA+CGG | - | chr3.4:4490853-4490872 | MS.gene51633:CDS | 35.0% | |
| ATCATTACATGTCTCAGAGA+TGG | - | chr3.4:4491578-4491597 | MS.gene51633:CDS | 35.0% | |
| ATCTCTTTATGGAAAGAGCT+CGG | - | chr3.4:4492016-4492035 | MS.gene51633:CDS | 35.0% | |
| CATGAAAGAGGATAGTATTG+AGG | - | chr3.4:4491675-4491694 | MS.gene51633:CDS | 35.0% | |
| CTACCGCTATAAGTTTCATA+GGG | + | chr3.4:4492723-4492742 | None:intergenic | 35.0% | |
| CTTCACGATTTGACTGAAAT+GGG | - | chr3.4:4492990-4493009 | MS.gene51633:intron | 35.0% | |
| GGAGATCAAGCAAAAGATAT+TGG | - | chr3.4:4493118-4493137 | MS.gene51633:intron | 35.0% | |
| GGGGATTTATGATACATTGA+AGG | - | chr3.4:4491696-4491715 | MS.gene51633:CDS | 35.0% | |
| GTTATTGCCAAGAATTTGAC+TGG | + | chr3.4:4492889-4492908 | None:intergenic | 35.0% | |
| TAAAGAACCCTAAAAAAGGC+GGG | + | chr3.4:4491032-4491051 | None:intergenic | 35.0% | |
| TACACATCATCAGCAATCAA+CGG | + | chr3.4:4491352-4491371 | None:intergenic | 35.0% | |
| TACACTCAGTATGAAAAAGC+AGG | - | chr3.4:4492120-4492139 | MS.gene51633:CDS | 35.0% | |
| TACCGCTATAAGTTTCATAG+GGG | + | chr3.4:4492722-4492741 | None:intergenic | 35.0% | |
| TACCTTCATACTACTAGGAA+TGG | - | chr3.4:4492596-4492615 | MS.gene51633:CDS | 35.0% | |
| TCAAAGAACCCTAAAAAAGG+CGG | + | chr3.4:4491181-4491200 | None:intergenic | 35.0% | |
| TCAAATATATCAGCATGCCA+TGG | + | chr3.4:4491919-4491938 | None:intergenic | 35.0% | |
| TCATTAGTAAATCTGCTGGA+GGG | - | chr3.4:4491728-4491747 | MS.gene51633:CDS | 35.0% | |
| TCTCATCAATCTAAGCTTGT+TGG | - | chr3.4:4492399-4492418 | MS.gene51633:CDS | 35.0% | |
| TCTGTTAAAAGTTGAAGGAG+TGG | - | chr3.4:4491474-4491493 | MS.gene51633:CDS | 35.0% | |
| TCTTCACGATTTGACTGAAA+TGG | - | chr3.4:4492989-4493008 | MS.gene51633:intron | 35.0% | |
| TGTGAATTAGCTGCAAAAGA+AGG | - | chr3.4:4492696-4492715 | MS.gene51633:CDS | 35.0% | |
| TTGAAGTCACAGATAGAAAC+TGG | - | chr3.4:4492189-4492208 | MS.gene51633:CDS | 35.0% | |
| TTGGATTCAAAACCCTAGAA+AGG | - | chr3.4:4491446-4491465 | MS.gene51633:CDS | 35.0% | |
| TTGTCTGCTAGGATTGTTTA+GGG | - | chr3.4:4491124-4491143 | MS.gene51633:CDS | 35.0% | |
| TTTCTGTTGGACTTGTATAC+TGG | + | chr3.4:4492311-4492330 | None:intergenic | 35.0% | |
| ! | ATGATAATGAGGGTTTCTGT+TGG | - | chr3.4:4491517-4491536 | MS.gene51633:CDS | 35.0% |
| ! | ATTGTTTAGGGTTTAGGGTT+AGG | - | chr3.4:4491136-4491155 | MS.gene51633:CDS | 35.0% |
| ! | CAAGGAAGTAAGCTTTTGAT+AGG | + | chr3.4:4493216-4493235 | None:intergenic | 35.0% |
| ! | CATTTTCATGCTTGGTCAAA+GGG | - | chr3.4:4493236-4493255 | MS.gene51633:CDS | 35.0% |
| ! | CTAGGATTGTTTAGGGTTTA+GGG | - | chr3.4:4491131-4491150 | MS.gene51633:CDS | 35.0% |
| ! | CTCATCAATCTAAGCTTGTT+GGG | - | chr3.4:4492400-4492419 | MS.gene51633:CDS | 35.0% |
| ! | GACCTCAACATATGATAATG+AGG | - | chr3.4:4491506-4491525 | MS.gene51633:CDS | 35.0% |
| ! | GTAATTTTCCCGCCTTTTTT+AGG | - | chr3.4:4491021-4491040 | MS.gene51633:CDS | 35.0% |
| ! | TGAAAGAGGATAGTATTGAG+GGG | - | chr3.4:4491677-4491696 | MS.gene51633:CDS | 35.0% |
| ! | TGAAGATCAACCTAAGTTGA+AGG | - | chr3.4:4493337-4493356 | MS.gene51633:CDS | 35.0% |
| ! | TGACTTTGAAAAACTAGGAG+AGG | - | chr3.4:4492449-4492468 | MS.gene51633:CDS | 35.0% |
| ! | TTGTTTAGGGTTTAGGGTTA+GGG | - | chr3.4:4491137-4491156 | MS.gene51633:CDS | 35.0% |
| !! | CAACTTAGGTTGATCTTCAA+TGG | + | chr3.4:4493336-4493355 | None:intergenic | 35.0% |
| !! | TAATTCATCAAGTTGAGTGG+TGG | + | chr3.4:4490950-4490969 | None:intergenic | 35.0% |
| !! | TATTGATTCAGTTGTCTGCT+AGG | - | chr3.4:4491113-4491132 | MS.gene51633:CDS | 35.0% |
| !! | TTCTGAAACTGTTAAGAAGG+CGG | - | chr3.4:4491324-4491343 | MS.gene51633:CDS | 35.0% |
| !!! | ATTTTGTTGATTCAGTTGGC+TGG | - | chr3.4:4491256-4491275 | MS.gene51633:CDS | 35.0% |
| !!! | CACAAGAAGTTTTAAGAGCA+TGG | + | chr3.4:4492680-4492699 | None:intergenic | 35.0% |
| !!! | CCTTTTTTAGGGTTCTTTGA+CGG | - | chr3.4:4491181-4491200 | MS.gene51633:CDS | 35.0% |
| !!! | GAGATTTATTTTACGCCCTT+TGG | - | chr3.4:4491986-4492005 | MS.gene51633:CDS | 35.0% |
| AAAAGCAACCAGCAGAATCT+GGG | - | chr3.4:4492249-4492268 | MS.gene51633:CDS | 40.0% | |
| AAAAGTTGAAGGAGTGGTTG+TGG | - | chr3.4:4491480-4491499 | MS.gene51633:CDS | 40.0% | |
| AAATCTGCACAAGAACACAC+TGG | - | chr3.4:4491294-4491313 | MS.gene51633:CDS | 40.0% | |
| AAGAAGCAACTACTCAACTG+AGG | + | chr3.4:4491649-4491668 | None:intergenic | 40.0% | |
| AATGGCATTTGATTCACCAG+AGG | - | chr3.4:4492614-4492633 | MS.gene51633:CDS | 40.0% | |
| AATTCTTCAGCCTGACATGT+GGG | - | chr3.4:4492758-4492777 | MS.gene51633:CDS | 40.0% | |
| ACCGCGTTATGTAAGAGATA+AGG | - | chr3.4:4492362-4492381 | MS.gene51633:CDS | 40.0% | |
| ACTGCACGTTATGTTGATCA+GGG | - | chr3.4:4491853-4491872 | MS.gene51633:CDS | 40.0% | |
| ACTTTCTGAGCGACTAAAAC+AGG | + | chr3.4:4490901-4490920 | None:intergenic | 40.0% | |
| AGAGGCTCAACAGTTAAACA+AGG | - | chr3.4:4492632-4492651 | MS.gene51633:CDS | 40.0% | |
| AGTTACATTCGGGGAACAAA+CGG | - | chr3.4:4491787-4491806 | MS.gene51633:CDS | 40.0% | |
| ATGTACGTTGTGAAGAGAGA+CGG | - | chr3.4:4490793-4490812 | MS.gene51633:CDS | 40.0% | |
| ATTTGACTGAAATGGGACTG+TGG | - | chr3.4:4492997-4493016 | MS.gene51633:intron | 40.0% | |
| ATTTGACTGGTAGATGCAGT+TGG | + | chr3.4:4492876-4492895 | None:intergenic | 40.0% | |
| CAAAGAACCCTAAAAAAGGC+GGG | + | chr3.4:4491180-4491199 | None:intergenic | 40.0% | |
| CCCTTATCTCTTACATAACG+CGG | + | chr3.4:4492366-4492385 | None:intergenic | 40.0% | |
| CCGCGTTATGTAAGAGATAA+GGG | - | chr3.4:4492363-4492382 | MS.gene51633:CDS | 40.0% | |
| CCGTCAAAGAACCCTAAAAA+AGG | + | chr3.4:4491184-4491203 | None:intergenic | 40.0% | |
| GCATCTACCAGTCAAATTCT+TGG | - | chr3.4:4492879-4492898 | MS.gene51633:CDS | 40.0% | |
| GCTCTTTCCATAAAGAGATC+AGG | + | chr3.4:4492015-4492034 | None:intergenic | 40.0% | |
| GCTGATACCTTCATACTACT+AGG | - | chr3.4:4492591-4492610 | MS.gene51633:CDS | 40.0% | |
| GCTGTCATTAGTAAATCTGC+TGG | - | chr3.4:4491724-4491743 | MS.gene51633:CDS | 40.0% | |
| GGAACAAACGGAACATCTAA+TGG | - | chr3.4:4491799-4491818 | MS.gene51633:CDS | 40.0% | |
| GGTATCAACAGTGAACTTGA+TGG | + | chr3.4:4493309-4493328 | None:intergenic | 40.0% | |
| GGTTCGTTTCGACAAGATAA+CGG | - | chr3.4:4490828-4490847 | MS.gene51633:CDS | 40.0% | |
| GGTTTCTGTTGGAATTCACA+AGG | - | chr3.4:4491528-4491547 | MS.gene51633:CDS | 40.0% | |
| GTCATTAGTAAATCTGCTGG+AGG | - | chr3.4:4491727-4491746 | MS.gene51633:CDS | 40.0% | |
| GTTAATATGGCTGTTGATCG+AGG | - | chr3.4:4493140-4493159 | MS.gene51633:intron | 40.0% | |
| GTTGTCTGCTAGGATTGTTT+AGG | - | chr3.4:4491123-4491142 | MS.gene51633:CDS | 40.0% | |
| TACTGCACGTTATGTTGATC+AGG | - | chr3.4:4491852-4491871 | MS.gene51633:CDS | 40.0% | |
| TCAGTTGAGTAGTTGCTTCT+TGG | - | chr3.4:4491648-4491667 | MS.gene51633:CDS | 40.0% | |
| TCATTGAACACACGAAGCAT+TGG | + | chr3.4:4491832-4491851 | None:intergenic | 40.0% | |
| TCGGGAGATGATATCAAAGA+CGG | - | chr3.4:4492818-4492837 | MS.gene51633:CDS | 40.0% | |
| TGAAGAATTCCCTTGCTTAC+AGG | + | chr3.4:4492747-4492766 | None:intergenic | 40.0% | |
| TGACCAAGCATGAAAATGCA+AGG | + | chr3.4:4493234-4493253 | None:intergenic | 40.0% | |
| TGATATCAAAGACGGGTGTA+CGG | - | chr3.4:4492826-4492845 | MS.gene51633:CDS | 40.0% | |
| TGCCATTCCTAGTAGTATGA+AGG | + | chr3.4:4492601-4492620 | None:intergenic | 40.0% | |
| TTACACACAGCAGTTTCTGT+TGG | + | chr3.4:4492324-4492343 | None:intergenic | 40.0% | |
| TTAGATTGATGAGACTCCAC+AGG | + | chr3.4:4492393-4492412 | None:intergenic | 40.0% | |
| TTGTTTAACTGTTGAGCCTC+TGG | + | chr3.4:4492633-4492652 | None:intergenic | 40.0% | |
| ! | AGAGTTTTCCCGCCTTTTTT+AGG | - | chr3.4:4491169-4491188 | MS.gene51633:CDS | 40.0% |
| ! | AGATCAACCTAAGTTGAAGG+AGG | - | chr3.4:4493340-4493359 | MS.gene51633:CDS | 40.0% |
| ! | CTTCCTTGCATTTTCATGCT+TGG | - | chr3.4:4493228-4493247 | MS.gene51633:intron | 40.0% |
| ! | GAAGTAAGCTTTTGATAGGC+GGG | + | chr3.4:4493212-4493231 | None:intergenic | 40.0% |
| ! | GCATTTTCATGCTTGGTCAA+AGG | - | chr3.4:4493235-4493254 | MS.gene51633:CDS | 40.0% |
| ! | GCTAGGATTGTTTAGGGTTT+AGG | - | chr3.4:4491130-4491149 | MS.gene51633:CDS | 40.0% |
| ! | GGAAGTAAGCTTTTGATAGG+CGG | + | chr3.4:4493213-4493232 | None:intergenic | 40.0% |
| !! | CTTCTTGGTTTGCATGAAAG+AGG | - | chr3.4:4491663-4491682 | MS.gene51633:CDS | 40.0% |
| !! | GAGTTTTCCCGCCTTTTTTA+GGG | - | chr3.4:4491170-4491189 | MS.gene51633:CDS | 40.0% |
| !! | GGCTAATTCATCAAGTTGAG+TGG | + | chr3.4:4490953-4490972 | None:intergenic | 40.0% |
| AAAGAGATCAGGCACCCAAA+GGG | + | chr3.4:4492004-4492023 | None:intergenic | 45.0% | |
| AAGAGATAAGGGTTTGCCTG+TGG | - | chr3.4:4492374-4492393 | MS.gene51633:CDS | 45.0% | |
| ACCCTGAACTCCAATACCAA+TGG | + | chr3.4:4492568-4492587 | None:intergenic | 45.0% | |
| ACCTTTCTGCAGTTTCGACT+GGG | + | chr3.4:4492527-4492546 | None:intergenic | 45.0% | |
| ACTAGGAGAGGTTACTTCTG+TGG | - | chr3.4:4492461-4492480 | MS.gene51633:CDS | 45.0% | |
| ACTGTGGAATCCTGCACTTA+AGG | - | chr3.4:4493013-4493032 | MS.gene51633:intron | 45.0% | |
| AGTAAATCTGCTGGAGGGAT+TGG | - | chr3.4:4491733-4491752 | MS.gene51633:CDS | 45.0% | |
| ATTCTTCAGCCTGACATGTG+GGG | - | chr3.4:4492759-4492778 | MS.gene51633:CDS | 45.0% | |
| CAACTACTCAACTGAGGTCT+AGG | + | chr3.4:4491643-4491662 | None:intergenic | 45.0% | |
| CCCTGAACTCCAATACCAAT+GGG | + | chr3.4:4492567-4492586 | None:intergenic | 45.0% | |
| CGGGAGATGATATCAAAGAC+GGG | - | chr3.4:4492819-4492838 | MS.gene51633:CDS | 45.0% | |
| CTGCACGTTATGTTGATCAG+GGG | - | chr3.4:4491854-4491873 | MS.gene51633:CDS | 45.0% | |
| CTGCAGAAAGGTCAAACTTG+CGG | - | chr3.4:4492535-4492554 | MS.gene51633:CDS | 45.0% | |
| GAAAAGCAACCAGCAGAATC+TGG | - | chr3.4:4492248-4492267 | MS.gene51633:CDS | 45.0% | |
| GAATTCTTCAGCCTGACATG+TGG | - | chr3.4:4492757-4492776 | MS.gene51633:CDS | 45.0% | |
| GGCCCCTATGAAACTTATAG+CGG | - | chr3.4:4492717-4492736 | MS.gene51633:CDS | 45.0% | |
| GGTCAAAGGGTTTGAAGACT+GGG | - | chr3.4:4493249-4493268 | MS.gene51633:CDS | 45.0% | |
| TAAAGAGATCAGGCACCCAA+AGG | + | chr3.4:4492005-4492024 | None:intergenic | 45.0% | |
| TAATTGTGCCCAGATTCTGC+TGG | + | chr3.4:4492260-4492279 | None:intergenic | 45.0% | |
| TCATCTGCCTCCTTCAACTT+AGG | + | chr3.4:4493350-4493369 | None:intergenic | 45.0% | |
| TCCCTCCAATTTGTGGGATT+GGG | - | chr3.4:4492788-4492807 | MS.gene51633:CDS | 45.0% | |
| TGAGGACGATGATACCAAGA+TGG | - | chr3.4:4493379-4493398 | MS.gene51633:CDS | 45.0% | |
| TGATACCAAGATGGCACAGA+TGG | - | chr3.4:4493388-4493407 | MS.gene51633:CDS | 45.0% | |
| TGCACGTTATGTTGATCAGG+GGG | - | chr3.4:4491855-4491874 | MS.gene51633:CDS | 45.0% | |
| TGGTAGATGCAGTTGGCATA+GGG | + | chr3.4:4492869-4492888 | None:intergenic | 45.0% | |
| TGGTCAAAGGGTTTGAAGAC+TGG | - | chr3.4:4493248-4493267 | MS.gene51633:CDS | 45.0% | |
| TGTGACTCCCTCCAATTTGT+GGG | - | chr3.4:4492782-4492801 | MS.gene51633:CDS | 45.0% | |
| TTCCCCGAATGTAACTACCA+CGG | + | chr3.4:4491783-4491802 | None:intergenic | 45.0% | |
| TTGGGTGCCTGATCTCTTTA+TGG | - | chr3.4:4492005-4492024 | MS.gene51633:CDS | 45.0% | |
| TTGTTCAAGCACAGAGTCTG+TGG | - | chr3.4:4492157-4492176 | MS.gene51633:CDS | 45.0% | |
| ! | ACCCATTGGTATTGGAGTTC+AGG | - | chr3.4:4492563-4492582 | MS.gene51633:CDS | 45.0% |
| ! | ACTCCTACACTTTTCAACGC+CGG | - | chr3.4:4491613-4491632 | MS.gene51633:CDS | 45.0% |
| ! | AGGGTTTAGGGTTAGGGTTA+GGG | - | chr3.4:4491143-4491162 | MS.gene51633:CDS | 45.0% |
| ! | AGGTTGATCTTCAATGGCAG+AGG | + | chr3.4:4493330-4493349 | None:intergenic | 45.0% |
| ! | CCCATTGGTATTGGAGTTCA+GGG | - | chr3.4:4492564-4492583 | MS.gene51633:CDS | 45.0% |
| ! | TACAATCGCAGAGTGCTAAG+TGG | - | chr3.4:4492939-4492958 | MS.gene51633:CDS | 45.0% |
| ! | TAGGGTTTAGGGTTAGGGTT+AGG | - | chr3.4:4491142-4491161 | MS.gene51633:CDS | 45.0% |
| !! | ACCTGGTTTGGCAGATTGTT+GGG | - | chr3.4:4492077-4492096 | MS.gene51633:CDS | 45.0% |
| !! | AGGTGCTTTTGCTGTGTACT+TGG | - | chr3.4:4491891-4491910 | MS.gene51633:CDS | 45.0% |
| !! | TGTTGATTCAGTTGGCTGGT+AGG | - | chr3.4:4491260-4491279 | MS.gene51633:CDS | 45.0% |
| ACCCAGTCGAAACTGCAGAA+AGG | - | chr3.4:4492523-4492542 | MS.gene51633:CDS | 50.0% | |
| ACCCCAATCCCACAAATTGG+AGG | + | chr3.4:4492793-4492812 | None:intergenic | 50.0% | |
| AGAGATGAGTGTACGTCCTG+TGG | - | chr3.4:4493428-4493447 | MS.gene51633:CDS | 50.0% | |
| AGCGGTAGTCCTGTAAGCAA+GGG | - | chr3.4:4492735-4492754 | MS.gene51633:CDS | 50.0% | |
| CAACTGAGGTCTAGGTGTTC+CGG | + | chr3.4:4491635-4491654 | None:intergenic | 50.0% | |
| CATCACTTGCAGCTCGTGTT+CGG | + | chr3.4:4493286-4493305 | None:intergenic | 50.0% | |
| CATGAAGAATGCGGCTCGAT+TGG | - | chr3.4:4491381-4491400 | MS.gene51633:CDS | 50.0% | |
| CCAAACCAGGTGCTTCATTG+GGG | + | chr3.4:4492068-4492087 | None:intergenic | 50.0% | |
| CCCCAATCCCACAAATTGGA+GGG | + | chr3.4:4492792-4492811 | None:intergenic | 50.0% | |
| CCCTCCAATTTGTGGGATTG+GGG | - | chr3.4:4492789-4492808 | MS.gene51633:CDS | 50.0% | |
| CTCCCTCCAATTTGTGGGAT+TGG | - | chr3.4:4492787-4492806 | MS.gene51633:CDS | 50.0% | |
| CTGGTAGATGCAGTTGGCAT+AGG | + | chr3.4:4492870-4492889 | None:intergenic | 50.0% | |
| GACCTTTCTGCAGTTTCGAC+TGG | + | chr3.4:4492528-4492547 | None:intergenic | 50.0% | |
| GCACGTTATGTTGATCAGGG+GGG | - | chr3.4:4491856-4491875 | MS.gene51633:CDS | 50.0% | |
| GCCAAACCAGGTGCTTCATT+GGG | + | chr3.4:4492069-4492088 | None:intergenic | 50.0% | |
| GCGGTAGTGCAATTGATGCA+AGG | + | chr3.4:4492347-4492366 | None:intergenic | 50.0% | |
| GGCAGATGATGCTGAGAATG+AGG | - | chr3.4:4493361-4493380 | MS.gene51633:CDS | 50.0% | |
| GGTAACGCCTTTGTAAACGC+CGG | + | chr3.4:4490929-4490948 | None:intergenic | 50.0% | |
| GGTAGATGCAGTTGGCATAG+GGG | + | chr3.4:4492868-4492887 | None:intergenic | 50.0% | |
| GTCGCTCAGAAAGTTTGTGC+CGG | - | chr3.4:4490907-4490926 | MS.gene51633:CDS | 50.0% | |
| GTGCCCGTGGTAGTTACATT+CGG | - | chr3.4:4491776-4491795 | MS.gene51633:CDS | 50.0% | |
| GTGTGACTCCCTCCAATTTG+TGG | - | chr3.4:4492781-4492800 | MS.gene51633:CDS | 50.0% | |
| TAGCGGTAGTCCTGTAAGCA+AGG | - | chr3.4:4492734-4492753 | MS.gene51633:CDS | 50.0% | |
| TCCCCGAATGTAACTACCAC+GGG | + | chr3.4:4491782-4491801 | None:intergenic | 50.0% | |
| TGCACCCCAATCCCACAAAT+TGG | + | chr3.4:4492796-4492815 | None:intergenic | 50.0% | |
| TGCATAATCGGGGTGGTTAG+CGG | + | chr3.4:4490998-4491017 | None:intergenic | 50.0% | |
| TGCCAAACCAGGTGCTTCAT+TGG | + | chr3.4:4492070-4492089 | None:intergenic | 50.0% | |
| TGCCCGTGGTAGTTACATTC+GGG | - | chr3.4:4491777-4491796 | MS.gene51633:CDS | 50.0% | |
| TGCTTCATTGGGGCAGAACA+GGG | + | chr3.4:4492058-4492077 | None:intergenic | 50.0% | |
| TTACGGATGCATAATCGGGG+TGG | + | chr3.4:4491005-4491024 | None:intergenic | 50.0% | |
| TTGCTGTGTACTTGGAGCCA+TGG | - | chr3.4:4491899-4491918 | MS.gene51633:CDS | 50.0% | |
| ! | GGAGCAGAGGCTCTAGTAAT+CGG | - | chr3.4:4492421-4492440 | MS.gene51633:CDS | 50.0% |
| ! | GTTCCGGCGTTGAAAAGTGT+AGG | + | chr3.4:4491619-4491638 | None:intergenic | 50.0% |
| ! | GTTTCGACAAGATAACGGCG+AGG | - | chr3.4:4490833-4490852 | MS.gene51633:CDS | 50.0% |
| ! | GTTTGTGCCGGCGTTTACAA+AGG | - | chr3.4:4490919-4490938 | MS.gene51633:CDS | 50.0% |
| !! | CACCTGGTTTGGCAGATTGT+TGG | - | chr3.4:4492076-4492095 | MS.gene51633:CDS | 50.0% |
| !! | CCTGGTTTGGCAGATTGTTG+GGG | - | chr3.4:4492078-4492097 | MS.gene51633:CDS | 50.0% |
| !! | TCTAAGCTTGTTGGGAGCAG+AGG | - | chr3.4:4492408-4492427 | MS.gene51633:CDS | 50.0% |
| AACTTGCGGCACAGACCCAT+TGG | - | chr3.4:4492549-4492568 | MS.gene51633:CDS | 55.0% | |
| ATGGAAAGAGCTCGGAGCGA+TGG | - | chr3.4:4492024-4492043 | MS.gene51633:CDS | 55.0% | |
| CCCCAACAATCTGCCAAACC+AGG | + | chr3.4:4492081-4492100 | None:intergenic | 55.0% | |
| CGGCACAGACCCATTGGTAT+TGG | - | chr3.4:4492555-4492574 | MS.gene51633:CDS | 55.0% | |
| CGTTATGTTGATCAGGGGGG+AGG | - | chr3.4:4491859-4491878 | MS.gene51633:CDS | 55.0% | |
| GAAGAGAGACGGTCGTCAAG+AGG | - | chr3.4:4490804-4490823 | MS.gene51633:CDS | 55.0% | |
| GCACACCATCTGTGCCATCT+TGG | + | chr3.4:4493396-4493415 | None:intergenic | 55.0% | |
| GCCCGTGGTAGTTACATTCG+GGG | - | chr3.4:4491778-4491797 | MS.gene51633:CDS | 55.0% | |
| GTGCTTCATTGGGGCAGAAC+AGG | + | chr3.4:4492059-4492078 | None:intergenic | 55.0% | |
| GTTCACAACATACGTGCCCG+TGG | - | chr3.4:4491763-4491782 | MS.gene51633:CDS | 55.0% | |
| TGGAAAGAGCTCGGAGCGAT+GGG | - | chr3.4:4492025-4492044 | MS.gene51633:CDS | 55.0% | |
| TGTGGGATTGGGGTGCACTT+CGG | - | chr3.4:4492799-4492818 | MS.gene51633:CDS | 55.0% | |
| ! | CCCCAATGAAGCACCTGGTT+TGG | - | chr3.4:4492065-4492084 | MS.gene51633:CDS | 55.0% |
| ! | TTCTGCCCCAATGAAGCACC+TGG | - | chr3.4:4492060-4492079 | MS.gene51633:CDS | 55.0% |
| CACTTGCAGCTCGTGTTCGG+AGG | + | chr3.4:4493283-4493302 | None:intergenic | 60.0% | |
| GAGAGACGGTCGTCAAGAGG+CGG | - | chr3.4:4490807-4490826 | MS.gene51633:CDS | 60.0% | |
| GGAAAGAGCTCGGAGCGATG+GGG | - | chr3.4:4492026-4492045 | MS.gene51633:CDS | 60.0% | |
| GGAGTCACACCCCACATGTC+AGG | + | chr3.4:4492771-4492790 | None:intergenic | 60.0% | |
| GTGGGATTGGGGTGCACTTC+GGG | - | chr3.4:4492800-4492819 | MS.gene51633:CDS | 60.0% | |
| TTGATCAGGGGGGAGGCAAG+AGG | - | chr3.4:4491866-4491885 | MS.gene51633:CDS | 60.0% | |
| CAGGGGGGAGGCAAGAGGAA+AGG | - | chr3.4:4491871-4491890 | MS.gene51633:CDS | 65.0% | |
| GAGCTCGGAGCGATGGGGAA+TGG | - | chr3.4:4492031-4492050 | MS.gene51633:CDS | 65.0% | |
| GGGGTGGTTAGCGGTCATGC+CGG | + | chr3.4:4490989-4491008 | None:intergenic | 65.0% | |
| GTGGTTAGCGGTCATGCCGG+CGG | + | chr3.4:4490986-4491005 | None:intergenic | 65.0% | |
| TTAGCCGCTGAAACCGCCGC+CGG | - | chr3.4:4490967-4490986 | MS.gene51633:CDS | 65.0% | |
| CATGCCGGCGGCGGTTTCAG+CGG | + | chr3.4:4490974-4490993 | None:intergenic | 70.0% | |
| GTTAGCGGTCATGCCGGCGG+CGG | + | chr3.4:4490983-4491002 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 4490793 | 4493457 | 4490793 | ID=MS.gene51633 |
| chr3.4 | mRNA | 4490793 | 4493457 | 4490793 | ID=MS.gene51633.t1;Parent=MS.gene51633 |
| chr3.4 | exon | 4493230 | 4493457 | 4493230 | ID=MS.gene51633.t1.exon1;Parent=MS.gene51633.t1 |
| chr3.4 | CDS | 4493230 | 4493457 | 4493230 | ID=cds.MS.gene51633.t1;Parent=MS.gene51633.t1 |
| chr3.4 | exon | 4490793 | 4492979 | 4490793 | ID=MS.gene51633.t1.exon2;Parent=MS.gene51633.t1 |
| chr3.4 | CDS | 4490793 | 4492979 | 4490793 | ID=cds.MS.gene51633.t1;Parent=MS.gene51633.t1 |
| Gene Sequence |
| Protein sequence |
