AlfalfaGEDB | MS.gene92155

M. sativa cultivar XinJiangDaYe / MS.gene92155

KEGG: K14778
GO: GO:0000166 GO:0003674 GO:0003676 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00270.32 PF00271.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92155.t1	XP_003596088.1	98.9	436	5	0	1	436	1	436	2.10E-240	841.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92155.t1	Q9SA27	63.9	429	143	4	1	420	1	426	2.8e-148	526.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92155.t1	G7IQY0	98.9	436	5	0	1	436	1	436	1.5e-240	841.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003309	MS.gene92155	PPI
MS.gene009476	MS.gene92155	PPI
MS.gene011242	MS.gene92155	PPI
MS.gene014682	MS.gene92155	PPI
MS.gene017078	MS.gene92155	PPI
MS.gene017080	MS.gene92155	PPI
MS.gene019193	MS.gene92155	PPI
MS.gene02106	MS.gene92155	PPI
MS.gene023799	MS.gene92155	PPI
MS.gene025141	MS.gene92155	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92155.t1	MTR_2g066050	98.853	436	5	0	1	436	1	436	0.0	891
MS.gene92155.t1	MTR_6g082080	46.419	377	193	4	53	427	10	379	1.23e-107	325
MS.gene92155.t1	MTR_7g056830	46.684	377	192	4	53	427	10	379	1.63e-107	325
MS.gene92155.t1	MTR_4g077370	75.635	197	48	0	53	249	250	446	7.05e-102	311
MS.gene92155.t1	MTR_4g077370	68.018	222	47	4	53	269	2	204	7.80e-95	293
MS.gene92155.t1	MTR_5g069330	38.032	376	209	7	53	423	3	359	1.12e-72	234
MS.gene92155.t1	MTR_5g069330	38.032	376	209	7	53	423	7	363	1.20e-72	234
MS.gene92155.t1	MTR_3g467550	37.296	429	236	11	9	415	71	488	8.43e-70	231
MS.gene92155.t1	MTR_3g467550	40.113	354	195	7	75	415	108	457	1.18e-68	227
MS.gene92155.t1	MTR_3g049990	39.118	363	214	4	53	411	152	511	2.89e-68	231

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92155.t1	AT1G16280	68.031	391	122	2	31	420	38	426	0.0	555
MS.gene92155.t1	AT5G60990	44.697	396	202	3	53	436	10	400	1.12e-109	331
MS.gene92155.t1	AT4G16630	37.433	374	223	4	53	420	168	536	5.55e-66	226
MS.gene92155.t1	AT1G55150	34.324	370	232	5	53	416	100	464	2.27e-65	218
MS.gene92155.t1	AT1G55150	34.324	370	232	5	53	416	125	489	5.46e-65	218
MS.gene92155.t1	AT2G47330	38.692	367	211	7	53	411	229	589	5.61e-65	223
MS.gene92155.t1	AT5G63120	34.574	376	233	5	54	422	167	536	9.04e-64	216
MS.gene92155.t1	AT2G33730	32.990	388	229	4	53	415	314	695	3.92e-61	211
MS.gene92155.t1	AT3G18600	34.177	395	246	6	50	435	87	476	7.41e-61	207
MS.gene92155.t1	AT3G58510	34.375	384	225	9	53	416	152	528	1.24e-60	208

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Find 103 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTCATAAGCTTCGA+AGG	0.541221	2.4:+27821012	None:intergenic
AAAGGTGAGATATATTAAAG+TGG	0.543356	2.4:-27816819	MS.gene92155:intron
AAATAGAGACCCTTATTGAA+AGG	0.594933	2.4:-27817420	MS.gene92155:CDS
AAATGGAAGATATGGGTATT+AGG	0.391277	2.4:-27820907	MS.gene92155:CDS
AACTCGGAATGAAAACTCCA+CGG	0.661336	2.4:-27822413	MS.gene92155:CDS
AATGGGAAGTGAAGGGTTTA+TGG	0.245410	2.4:+27822554	None:intergenic
ACACGATGGATATAATCTCT+TGG	0.493233	2.4:+27819532	None:intergenic
ACATCAGTTGCTAGTAATAC+AGG	0.466128	2.4:+27819703	None:intergenic
ACCGCCACATTCTCCGATCT+CGG	0.539623	2.4:-27822468	MS.gene92155:CDS
ACCTTAGTCCTAGCGAAAAC+CGG	0.466218	2.4:+27822042	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACAAAAATAGCAGGC+AGG	+	chr2.4:27818749-27818768	None:intergenic	30.0%
AAAAACAAAAATAGCAGGCA+GGG	+	chr2.4:27818748-27818767	None:intergenic	30.0%
AAAATCAAGGATATCAGACA+AGG	-	chr2.4:27822564-27822583	MS.gene92155:CDS	30.0%
AAACTGTGTTTATTGTCCTT+CGG	+	chr2.4:27818979-27818998	None:intergenic	30.0%
AAATAGAGACCCTTATTGAA+AGG	-	chr2.4:27822012-27822031	MS.gene92155:intron	30.0%
AAATGGAAGATATGGGTATT+AGG	-	chr2.4:27818525-27818544	MS.gene92155:intron	30.0%
AGAAAGTAAAGAAGTCGTTA+GGG	+	chr2.4:27822219-27822238	None:intergenic	30.0%
AGAATGATGTTGATCTCATT+CGG	-	chr2.4:27821988-27822007	MS.gene92155:intron	30.0%
AGCAATGTTCAACATACAAA+TGG	+	chr2.4:27820205-27820224	None:intergenic	30.0%
AGCACTTCATGACTTTAAAT+CGG	-	chr2.4:27819698-27819717	MS.gene92155:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	27816814	27822640	27816814	ID=MS.gene92155
chr2.4	mRNA	27816814	27822640	27816814	ID=MS.gene92155.t1;Parent=MS.gene92155
chr2.4	exon	27822044	27822640	27822044	ID=MS.gene92155.t1.exon1;Parent=MS.gene92155.t1
chr2.4	CDS	27822044	27822640	27822044	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1
chr2.4	exon	27820878	27821200	27820878	ID=MS.gene92155.t1.exon2;Parent=MS.gene92155.t1
chr2.4	CDS	27820878	27821200	27820878	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1
chr2.4	exon	27819643	27819846	27819643	ID=MS.gene92155.t1.exon3;Parent=MS.gene92155.t1
chr2.4	CDS	27819643	27819846	27819643	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1
chr2.4	exon	27819477	27819558	27819477	ID=MS.gene92155.t1.exon4;Parent=MS.gene92155.t1
chr2.4	CDS	27819477	27819558	27819477	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1
chr2.4	exon	27817366	27817464	27817366	ID=MS.gene92155.t1.exon5;Parent=MS.gene92155.t1
chr2.4	CDS	27817366	27817464	27817366	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1
chr2.4	exon	27816814	27816837	27816814	ID=MS.gene92155.t1.exon6;Parent=MS.gene92155.t1
chr2.4	CDS	27816814	27816837	27816814	ID=cds.MS.gene92155.t1;Parent=MS.gene92155.t1

Gene Sequence

>MS.gene92155

ATGGAGCAACCACAACACCTTGTAGACCAAAATTTTCCACTCTTCAAACCATCTCGTAAACCCTCCATAAACCCTTCACTTCCCATTTCCAATAAACCTCAAAACGACGTCGTTACACACGAAACCCTTAATTCCAACCCCGAAAACACCACCGCCACATTCTCCGATCTCGGCCTCTCCGAATGGGCGGTAAAAACCTGCAAAGAACTCGGAATGAAAACTCCACGGCGCGTGCAACAACACTGCATCCCTCAAATTCTATCTGGCCGTCACGTGATTGGAATCGACGAGACTGGAAGCGGTAAAACGGCTGCATTTGCGCTTCCGATTCTGCAGCGGCTTGCTGAACATACGTTTGGTGTGTTTGCGCTTGTGGTGACGCCCACGCGCGAGCTTGCGTTTCAGTTGGCGGAGCAGTTTAGGGCGCTTGGTTCGTCGCTTCGGCTTCGGATTGCCGTTGTTGTTGGTGGTATGGATATGCTTAGACAGACTAAAGAGTTGGTTGCTAGGCCGCATCTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTTAAGGATAATCCTGAAATTGCTCCGGTTTTCGCTAGGACTAAGGTAATTCGAATTCGTTGATTTGATCATTATGAATTTGGTGATGATTTTGTTTTTGTGTTTAATTTGATTGTGTTGTTGATTTTGAGACGTGTTTGGATAAATAACTTAATTAAGCGCTTAAAGCATTAACACTTACATGTCAGGCCTTATTTGGATAAACAACTTAACTTGCAAGTTATATCATGATTGCTTGTTATGATAAGCAATGATTATGTATAAGCTACTTTAACAAAAGATAAAATATAGTTAAAGTGTTTCGTATAAACAATAAGCTGTTTTCTAAAGCTATCTTGGAGAGCTTATGATAATAAGCTGAAAACAGTTTATGAATATGTTATTAGCTGTTTTCGTAAGTGTTTATGATGGTAAATATGATCAAATAATCCAGTCGAAACAGGCCCTGAGTTATTTTAATAACAAAAGATAACAAGTTGGGTTATTTCTATAACAAAAGATGAAATAAAAAGTCATACTATTCCCACATAAGCTAAAAGCTATTTTCATAAGTTATCATGAAGAGTTTATGGAAATGAGCTGAAAAGAGCTTATGGACATGTATATACATTTTTTGTTTCTATAAGCTCACTCAAGTAGTTAGTTAGTCACACAAGTGCTAAACTCAAATAAGCTAATCCAAGCGGCTCCTTACCCGGGTGAGTACAAATCTATCCATGATTGGAATATAGAATCTCTTTTGCATGTGTATGTGTTAGTAATCAAAATTGGATAATGTACTTGAATGGTTAAATAATAGAGATAATTTTGCATTGCATTGTTTTAAAACTTAATTAATAGATTAAGCATTATTATGATTATGCTGATATTTATGCATTGCTTTTGCAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGATGAATTGAAATTTATATTTCAGTGCTTACCAGAAAACCGGCAAAACCTACTTTTTTCTGCAACAACAACTAGTAATTTACAAAAATTGCGTGAGCGTTATCAAGATAAGTTGTATGCCTTCGAAGCTTATGAAGGGTTTAAGACGGTTGAAAATCTTAAGCAACAGGTTGTATTCATCCCTAAAAATGTGAAGGATGTATATTTGTTGCACATCTTGTCTAAAATGGAAGATATGGGTATTAGGTCTGCCATCGTCTTTGTCTCCACATGCAGGTATCTTTCTAGATGATGTGTTTGAATTTTTCATAACCATTTTTTGTTACATGTATTTTGGCATGATATTCATTTTTATTCTCAAGTTCACAACTCTTTTTTTTTGGGGTTGCTATAGTAATAGAACCATGTTGCCACTTTCACTTTTTAGAACATTTGATTAAACAACCCTGCCTGCTATTTTTGTTTTTTTGTAGCTTATATTGTACTTCTGTCTTTCATTATTTTATTTTTATTTGATCATTAGGCTGTTATGTGTTTGTCTTAACTTCCCTCTTCCTCAGTGTCATTGTAATACCAACATGATAAAATTTGATTGTGTTAGTTTTGCATTTTCCCCTCGTTTGTTGTGGACAGTTTATTGGCAATAACTAGATATTATTAGCATTCTTTATGATTCCGAAGGACAATAAACACAGTTTCAAGCTTTTGGTTGTTGCCTCTCCAGAGTCCAGTCTAATAATTAAATGTCTGTTTGTGGATGAGATCGTCTCTCATTAAATAAAAGCTTTCATGATGTGCCAATTTTTTTGATTTGAAGTCCGGCATTGTAATCTTGGTAGTAGGCACTTGGCTTTTTGATGTTCCCTGCTTGCTAGTAGACATAGGGTGCAAGTAGGATTTCTTTCCTAAAATATGGGATACCCGTCTTTCAGCAGATAATGTGGACTATGGTTTACTCATTAATAGTTGGAAAGAATTCTGTGTTACTTTTAGTTAATGATTCAAATATAAAGATGAGTTTTATTTATTTGTATTCTATAGCAATTTTTTCCTCTGTTGCTTTTTCTATCTGTAGCATATTATAGCGGAGGAATTGGTAGAGTTAATCTTTGGTTCTGTTTTTACTGTTTATTCTTGGACATCAGAACTACTGTTCTGAGTCATGCTTGCTTACACTTGGTGTTGAAGTGGAGGTCTAATGGTGGAATCTTTTATGACGGTTATAACTAACAGATTATCCTAGGCAATTACATGTCCTTCTCTTTGTCTAAATATTTGTAGATACTCTAACAGTTCCCAAATTGCAGAGATTGTCATCGTTTAAATTTAATGCTGGAAGTGCTCGATCAAGAAGCTGCAGCTTTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCGGGAAAGGTTCCTGTATTACTAGCAACTGATGTTGCTGGCCGTGGTCTGGATATACCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTACTTTTCTTTTCCAAATTTGTTTTATTATTCGTTTACATTTGAAGCATTTGATGAAACGGATTTCGGCTATTCACATGTAGGTTTCCAAGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTCGCTTTGAGCCTTGTTACCCAGGTAAGAGCAAACTTTGTTGTTTTTTATTTTCTGTTTCACTTCTGATCATAAAACTTTCACATGGTTTTCAATCTATTTCCTATCCCGCCCCCCGTTACATTTTCTGAAAGCAAATGGACACACCCTTACAAATTTCCTTCTTTTGTTTGAAGTCGAGTCTTCATTCATTGAATGCATTGGTTTTTTTCTTGTAATTCTCATGTTGACTGGTTGCTACGTCGGCACCATTTGTATGTTGAACATTGCTTCTCTGTCCACCTTATATAAATAGATAATGGAACTCAAAGCCATGAAAATTAGATGTCATGGTGAAAAATTTCATAAACATGATGAAAATTTCAAATTTTTGGCTTGGAAAATCAATAGCCCTGCCATCTTTATGCATTCTTTATATCAAAGCCCAGCTTTGGCTCCCTCATAAACATTACTGTGAAATAAATGCATTTGATTTTATGTACCAACACATACATCATGTTTAGGATCTCAATTATTCTAGTTGGATTCAAATGGTTATTTTTCCGAACTCATATCCTTAAGGTTGTTAATTGATGAAAGCGGGACTGTACCAGCAAATTGTTTAACTATCTACCCTTTGGCTTGGCATGGTCCTTTCTTTGTCATACAATTTAGTTGTTAAAATTGAACCTTATTTTATTGCCTATGTACAAAATGGGGCATGTCATGCAGATGACCAGTGATTGCCTTCTTTGTCTCATTTATATATTCCTTATCCTTATTTTTACACATGCACTTGCACATCTGTTCAGACATTTACTTTTTTGGGTTAAAGTGGTGGATCCTTCTGGAAGTTATCCAAAGCATTCACCACTCATCCCTTCCTAGTTACGTGCTATCTTCTAAACTACAAGCTTATTTATATCTTGAAATTTTGAACATCTACATAAAATGAGCAAGTCGAGTCATTGCAGCTGTTTATTTTTTTAATACTGATATTTGGATATTATACTATGCACTGAACTATTCTAGTTTTTGAAGTGTAGTTATGTAATGGTGTTGTAGGGAGATCGATCTTAAAGATATTTTGTCAAAAAAGAAAGGATGATTGTGTTGTGCTGTTTTTTTCCCCTTTTCGAACATTTTCTACTTGACAGAAACACAAGAGTTATTGATTTGAGATGTTTAACCAGAGTTAATTACCACTAAATTCTAAACTTTGCTTGTTGAAAAAACCTAGAGGGTATGTTTGGATCCCCTATGCTGCTGGTGGATTCTCAACAACTGAATTCAATATTGAGACCATGGCTTTGGTGATGTCAAATGTCCTTTCCTTAGCTTTAAAGAGGTTTACAAGACTTTTCTTAAACTGTACATGTGTCTTGGTGGAGACCCTTGAGTATGCTGTAACTTGCATCAAGATGTTCTATCAACATTTGATTAGTACTTCATTCATTTTCAAACCAAATTGTGTTCAATTCTGCAAATGCATCACAACAGAAACCACAATGTGTCATAAATCATACATATGTTCCTCTTTACTAATTTAAATTCAATACATTACAGATGAATTTCGGCCAAGAGAAAATTATAGTTAATAGGCATATAGGTTGTTCAGATACATGTCTGGATTTGGGTTTTCTGAAATATTTAAGATATTAGTGTTTTATTGAGGGAAAGTTTTAGGAAGTGGTTTATTGGGAAGATATTAGGAAAGTTATGAAGTTGTTTATTGGGAGGGAAAGACCAAGTTCTCTAATTTTTTGAAGGGAGAGACCAAGACTCTCGAATTTTTTGGAGGAAACTGCTGTTTGCTGTATCTATCCTTGATTTTTTTTGGGAGGAAACCATATCTAACTTTGTAATTAAATTCTGGCCACTGAACCAGAATTATTCAATAAAAGCCAGTATTCAATTCAGTTTCCTAGTTATGATTATGTTAGAAACTGGTACCAATTTACAACAGAAATAGAATTACACTCACTTTATAGAATGCACACAATTTAGGATTCTGCCTTTTGTTGTGCATTGATTTCCTCTTTTGCCACCATTTGCAGAATGATGTTGATCTCATTCGGGAAATAGAGACCCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTCCTTTCTCTCATGAAAAAGGTATGTTTTTACAGGTGTAGCTTGTCCGTCTAAGCATTGAATTGCATATTAGATATTATTTGATTCTAGCTTTTTATTAAAATGATAATTATGTGCTATGTAAGACTTTTGTTAAAAAAAAAAGAATCCCTAACGACTTCTTTACTTTCTGATGCATTGCAGGTTTTCAGTGCTAAGAATGTTGCAAAAATGAAGATGATGGATGATGGGTTTGAAGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAACGCTAGAAGAGAAAGGATTATTGAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTTCCAAAGGGAAATAAACAGGAAAAAGTGAAATTGGATACATCAGCAGATGTAACATCAATAAAGAAAAGGAGTAAAAAGAGAGAATAAATTGTTATATCTAGGATCTAGTAACTAAAATGATTGTTTCTCTAAACACGAAAAGAATTTGAAGATTGTTGCTCCAAAAATCAAGGATATCAGACAAGGTGAGATGTATTATTTTTTTGGTGGTGAAAGGTGAGATATATTAAAGTGGACTGA

Protein sequence

>MS.gene92155.t1

MEQPQHLVDQNFPLFKPSRKPSINPSLPISNKPQNDVVTHETLNSNPENTTATFSDLGLSEWAVKTCKELGMKTPRRVQQHCIPQILSGRHVIGIDETGSGKTAAFALPILQRLAEHTFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVVVGGMDMLRQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQDELKFIFQCLPENRQNLLFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVENLKQQVVFIPKNVKDVYLLHILSKMEDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPVLLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIETLIERQLEMIEYKENEVLSLMKKVRYIKVD