AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene51777

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51777.t1 MTR_0121s0080 87.288 236 30 0 1 236 1 236 4.21e-152 422
MS.gene51777.t1 MTR_7g062350 84.685 222 33 1 16 236 27 248 5.22e-138 387
MS.gene51777.t1 MTR_8g043650 72.574 237 64 1 1 236 1 237 1.44e-122 348
MS.gene51777.t1 MTR_1g105920 74.886 219 55 0 1 219 1 219 1.18e-117 335
MS.gene51777.t1 MTR_1g105910 72.889 225 61 0 1 225 1 225 6.87e-117 333
MS.gene51777.t1 MTR_2g030740 73.973 219 57 0 1 219 1 219 5.38e-116 331
MS.gene51777.t1 MTR_1g012570 72.146 219 61 0 1 219 1 219 1.99e-113 325
MS.gene51777.t1 MTR_1g108510 69.787 235 53 3 1 225 1 227 3.10e-113 324
MS.gene51777.t1 MTR_3g030770 69.787 235 53 3 1 225 1 227 7.92e-112 320
MS.gene51777.t1 MTR_2g093190 70.213 235 52 3 1 225 1 227 1.60e-111 319
MS.gene51777.t1 MTR_3g052920 70.320 219 65 0 1 219 1 219 3.58e-110 316
MS.gene51777.t1 MTR_1g108580 69.068 236 53 3 1 225 1 227 4.02e-109 313
MS.gene51777.t1 MTR_2g085280 63.136 236 86 1 1 235 1 236 2.47e-104 301
MS.gene51777.t1 MTR_2g085250 63.136 236 86 1 1 235 1 236 7.61e-104 300
MS.gene51777.t1 MTR_1g075600 64.000 225 81 0 1 225 1 225 7.33e-103 298
MS.gene51777.t1 MTR_1g105905 65.909 220 74 1 18 236 1 220 1.02e-101 294
MS.gene51777.t1 MTR_5g055100 60.759 237 92 1 1 236 1 237 6.15e-101 293
MS.gene51777.t1 MTR_1g077360 62.222 225 85 0 1 225 1 225 4.13e-100 291
MS.gene51777.t1 MTR_5g053390 63.556 225 82 0 1 225 1 225 1.39e-97 285
MS.gene51777.t1 MTR_5g045560 61.778 225 86 0 1 225 1 225 2.81e-96 281
MS.gene51777.t1 MTR_3g052870 64.840 219 58 1 1 219 1 200 8.62e-95 276
MS.gene51777.t1 MTR_1g106070 73.481 181 48 0 1 181 1 181 5.86e-94 273
MS.gene51777.t1 MTR_3g030780 84.091 132 21 0 1 132 1 132 1.36e-75 225
MS.gene51777.t1 MTR_0121s0100 75.000 132 33 0 1 132 1 132 1.02e-64 197
MS.gene51777.t1 MTR_3g080940 53.947 152 70 0 9 160 9 160 1.25e-54 174
MS.gene51777.t1 MTR_1g075570 55.618 178 65 1 18 195 1 164 2.19e-54 172
MS.gene51777.t1 MTR_3g067910 63.725 102 36 1 21 121 2 103 8.82e-40 133
MS.gene51777.t1 MTR_1g108500 72.165 97 6 1 22 118 110 185 1.06e-36 132
MS.gene51777.t1 MTR_8g086290 38.462 182 96 3 5 183 8 176 2.16e-34 121
MS.gene51777.t1 MTR_2g105290 38.037 163 97 1 5 167 8 166 6.00e-33 117
MS.gene51777.t1 MTR_7g028448 44.203 138 65 3 22 159 25 150 9.97e-28 104
MS.gene51777.t1 MTR_4g036915 44.203 138 65 3 22 159 25 150 9.97e-28 104
MS.gene51777.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 6.70e-26 96.3
MS.gene51777.t1 MTR_3g067915 65.672 67 23 0 60 126 30 96 1.99e-23 90.9
MS.gene51777.t1 MTR_4g127140 32.927 164 96 3 22 175 25 184 2.72e-23 93.2
MS.gene51777.t1 MTR_1g054265 55.128 78 35 0 9 86 2 79 1.33e-22 90.9
MS.gene51777.t1 MTR_1g047550 50.000 90 36 1 9 89 2 91 2.49e-22 90.5
MS.gene51777.t1 MTR_4g131030 39.200 125 61 2 9 118 2 126 4.53e-22 90.9
MS.gene51777.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 6.60e-22 89.4
MS.gene51777.t1 MTR_1g063160 44.554 101 54 1 9 109 2 100 1.24e-21 88.6
MS.gene51777.t1 MTR_8g051580 55.072 69 31 0 9 77 2 70 2.50e-20 85.1
MS.gene51777.t1 MTR_3g067870 63.492 63 23 0 16 78 83 145 2.90e-20 84.3
MS.gene51777.t1 MTR_8g046350 53.623 69 32 0 9 77 2 70 2.11e-19 82.4
MS.gene51777.t1 MTR_4g094632 39.091 110 65 1 9 118 2 109 4.15e-18 79.0
MS.gene51777.t1 MTR_3g005530 50.000 70 33 1 7 76 2 69 3.99e-17 77.8
MS.gene51777.t1 MTR_4g093970 32.353 204 102 6 11 186 30 225 6.91e-17 77.4
MS.gene51777.t1 MTR_4g094638 38.679 106 64 1 9 113 2 107 1.33e-16 75.1
MS.gene51777.t1 MTR_4g102530 50.769 65 32 0 12 76 5 69 2.03e-16 75.5
MS.gene51777.t1 MTR_3g452380 42.857 84 48 0 3 86 11 94 2.08e-16 76.3
MS.gene51777.t1 MTR_3g102570 43.137 102 55 3 9 109 2 101 3.78e-16 76.3
MS.gene51777.t1 MTR_8g033270 48.571 70 34 1 7 76 2 69 1.03e-15 74.3
MS.gene51777.t1 MTR_5g066180 48.485 66 34 0 11 76 4 69 1.47e-15 73.6
MS.gene51777.t1 MTR_8g087860 40.000 100 51 3 7 100 18 114 1.54e-15 73.6
MS.gene51777.t1 MTR_1g053070 39.806 103 59 2 7 108 2 102 2.31e-15 73.2
MS.gene51777.t1 MTR_0003s0590 41.667 84 47 1 7 90 2 83 3.78e-15 72.8
MS.gene51777.t1 MTR_8g033220 43.902 82 45 1 12 92 5 86 4.14e-15 72.0
MS.gene51777.t1 MTR_8g033220 43.902 82 45 1 12 92 5 86 4.50e-15 72.4
MS.gene51777.t1 MTR_2g017865 48.571 70 34 1 7 76 17 84 4.96e-15 72.4
MS.gene51777.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 5.06e-15 73.6
MS.gene51777.t1 MTR_2g009890 45.714 70 36 1 7 76 2 69 8.22e-15 72.4
MS.gene51777.t1 MTR_4g109830 45.070 71 36 2 7 76 2 70 8.66e-15 71.6
MS.gene51777.t1 MTR_1g101970 47.143 70 35 1 7 76 2 69 1.02e-14 70.5
MS.gene51777.t1 MTR_5g032520 45.455 66 36 0 11 76 4 69 1.09e-14 71.2
MS.gene51777.t1 MTR_8g022970 31.868 182 104 6 2 177 13 180 1.20e-14 70.1
MS.gene51777.t1 MTR_7g016630 35.593 118 63 5 7 114 2 116 1.30e-14 71.2
MS.gene51777.t1 MTR_6g464720 46.479 71 35 2 7 76 2 70 1.33e-14 71.2
MS.gene51777.t1 MTR_7g075870 47.692 65 34 0 12 76 5 69 1.33e-14 70.5
MS.gene51777.t1 MTR_5g032150 45.455 66 36 0 11 76 4 69 1.51e-14 70.9
MS.gene51777.t1 MTR_5g031000 45.714 70 36 1 7 76 2 69 4.61e-14 69.3
MS.gene51777.t1 MTR_5g031000 45.714 70 36 1 7 76 2 69 4.87e-14 69.7
MS.gene51777.t1 MTR_6g015975 46.479 71 35 2 7 76 2 70 6.01e-14 69.3
MS.gene51777.t1 MTR_7g016600 46.479 71 35 2 7 76 2 70 6.24e-14 69.3
MS.gene51777.t1 MTR_8g066260 43.662 71 37 2 7 76 2 70 8.47e-14 68.9
MS.gene51777.t1 MTR_1g038300 45.833 72 35 2 7 76 2 71 8.93e-14 68.6
MS.gene51777.t1 MTR_2g461710 51.724 58 26 1 7 64 2 57 9.75e-14 64.3
MS.gene51777.t1 MTR_8g097090 38.235 102 57 3 7 104 2 101 1.45e-13 68.2
MS.gene51777.t1 MTR_7g075870 46.970 66 34 1 12 76 5 70 1.78e-13 67.4
MS.gene51777.t1 MTR_3g084980 36.364 110 64 3 7 112 2 109 2.32e-13 67.8
MS.gene51777.t1 MTR_5g021270 47.222 72 34 2 7 76 2 71 2.45e-13 67.4
MS.gene51777.t1 MTR_5g021270 47.222 72 34 2 7 76 2 71 2.53e-13 67.4
MS.gene51777.t1 MTR_5g046870 45.070 71 36 2 7 76 2 70 3.49e-13 64.3
MS.gene51777.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 4.63e-13 65.9
MS.gene51777.t1 MTR_4g109810 28.395 243 127 13 7 225 2 221 5.77e-13 66.6
MS.gene51777.t1 MTR_5g046790 35.652 115 55 5 9 111 2 109 6.59e-13 65.9
MS.gene51777.t1 MTR_5g066960 45.763 59 30 1 7 65 2 58 7.66e-13 62.0
MS.gene51777.t1 MTR_3g088615 43.056 72 37 2 7 76 2 71 8.88e-13 65.1
MS.gene51777.t1 MTR_3g113030 46.667 60 32 0 12 71 5 64 1.00e-12 65.9
MS.gene51777.t1 MTR_3g109930 32.847 137 82 2 27 159 20 150 1.06e-12 64.7
MS.gene51777.t1 MTR_1g029670 30.769 130 67 4 7 133 2 111 1.43e-12 64.3
MS.gene51777.t1 MTR_7g075850 43.056 72 37 2 7 76 2 71 2.22e-12 65.1
MS.gene51777.t1 MTR_4g108720 30.000 130 84 5 9 134 2 128 6.52e-11 61.6
MS.gene51777.t1 MTR_4g051538 25.854 205 129 6 5 204 5 191 8.31e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene51777.t1 AT5G60440 53.892 167 74 2 5 168 3 169 4.09e-53 173
MS.gene51777.t1 AT2G24840 44.720 161 78 4 9 163 63 218 1.04e-36 130
MS.gene51777.t1 AT1G01530 43.293 164 90 2 4 166 2 163 1.83e-35 126
MS.gene51777.t1 AT1G65360 35.111 225 122 7 5 211 3 221 2.78e-34 122
MS.gene51777.t1 AT4G36590 38.462 182 104 3 5 179 3 183 9.70e-32 117
MS.gene51777.t1 AT3G04100 32.934 167 98 4 2 159 7 168 4.60e-24 95.9
MS.gene51777.t1 AT2G34440 39.823 113 67 1 9 121 2 113 3.60e-21 87.4
MS.gene51777.t1 AT3G66656 38.655 119 69 1 9 123 2 120 1.82e-20 85.5
MS.gene51777.t1 AT1G28460 32.222 180 108 4 5 177 4 176 7.55e-20 84.0
MS.gene51777.t1 AT1G72350 52.055 73 33 1 9 81 43 113 8.63e-19 82.4
MS.gene51777.t1 AT4G09960 40.000 125 63 4 7 126 2 119 2.00e-18 81.3
MS.gene51777.t1 AT4G09960 40.157 127 64 4 5 126 26 145 2.02e-18 82.0
MS.gene51777.t1 AT4G09960 39.216 102 50 2 7 108 2 91 3.01e-18 80.9
MS.gene51777.t1 AT4G09960 40.000 125 63 4 7 126 3 120 3.13e-18 80.9
MS.gene51777.t1 AT4G09960 40.000 125 63 4 7 126 12 129 4.17e-18 80.9
MS.gene51777.t1 AT4G09960 40.157 127 64 4 5 126 95 214 4.71e-18 82.0
MS.gene51777.t1 AT2G45660 33.835 133 63 2 12 119 5 137 1.10e-17 77.8
MS.gene51777.t1 AT4G18960 39.423 104 51 2 5 108 16 107 2.83e-17 78.6
MS.gene51777.t1 AT2G45660 33.835 133 63 2 12 119 5 137 3.15e-17 77.8
MS.gene51777.t1 AT4G22950 47.297 74 39 0 12 85 5 78 4.58e-17 76.3
MS.gene51777.t1 AT2G45650 50.000 70 33 1 7 76 2 69 7.80e-17 77.4
MS.gene51777.t1 AT1G29962 30.435 184 109 6 5 177 4 179 1.29e-16 75.5
MS.gene51777.t1 AT4G22950 46.667 75 40 0 12 86 5 79 2.46e-16 75.5
MS.gene51777.t1 AT4G22950 46.667 75 40 0 12 86 5 79 2.46e-16 75.5
MS.gene51777.t1 AT5G51870 52.308 65 31 0 12 76 5 69 3.12e-16 74.3
MS.gene51777.t1 AT5G51870 52.308 65 31 0 12 76 5 69 3.72e-16 74.7
MS.gene51777.t1 AT5G51870 52.308 65 31 0 12 76 5 69 6.36e-16 74.3
MS.gene51777.t1 AT2G42830 48.000 75 37 1 2 76 12 84 7.11e-16 74.7
MS.gene51777.t1 AT2G42830 48.000 75 37 1 2 76 12 84 7.19e-16 74.7
MS.gene51777.t1 AT5G51870 52.308 65 31 0 12 76 15 79 7.40e-16 74.3
MS.gene51777.t1 AT5G51870 52.308 65 31 0 12 76 28 92 8.24e-16 73.6
MS.gene51777.t1 AT3G58780 48.000 75 37 1 2 76 12 84 1.02e-15 74.3
MS.gene51777.t1 AT3G58780 48.000 75 37 1 2 76 18 90 1.03e-15 74.3
MS.gene51777.t1 AT1G22130 38.710 93 56 1 9 100 2 94 1.26e-15 75.1
MS.gene51777.t1 AT3G57230 44.286 70 37 1 7 76 2 69 1.26e-15 72.0
MS.gene51777.t1 AT1G28450 30.726 179 104 6 5 168 4 177 1.61e-15 72.4
MS.gene51777.t1 AT2G22540 48.485 66 34 0 11 76 4 69 1.66e-15 73.6
MS.gene51777.t1 AT2G22540 48.485 66 34 0 11 76 4 69 1.66e-15 73.6
MS.gene51777.t1 AT1G77980 47.887 71 36 1 9 78 2 72 1.79e-15 74.7
MS.gene51777.t1 AT3G58780 48.000 75 37 1 2 76 12 84 1.88e-15 73.9
MS.gene51777.t1 AT5G13790 50.000 70 33 1 7 76 2 69 2.25e-15 73.9
MS.gene51777.t1 AT5G13790 50.000 70 33 1 7 76 2 69 2.26e-15 73.6
MS.gene51777.t1 AT4G24540 48.485 66 34 0 11 76 4 69 2.50e-15 72.8
MS.gene51777.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.62e-15 73.2
MS.gene51777.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.62e-15 73.2
MS.gene51777.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.62e-15 73.2
MS.gene51777.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.62e-15 73.2
MS.gene51777.t1 AT4G37940 45.714 70 36 1 7 76 2 69 4.26e-15 72.0
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 4.34e-15 69.3
MS.gene51777.t1 AT4G37940 45.714 70 36 1 7 76 2 69 4.34e-15 72.4
MS.gene51777.t1 AT3G54340 35.714 126 65 5 7 125 2 118 4.39e-15 72.4
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 5.08e-15 70.5
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 5.08e-15 70.5
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 5.08e-15 70.5
MS.gene51777.t1 AT4G37940 45.714 70 36 1 7 76 2 69 5.47e-15 70.9
MS.gene51777.t1 AT3G57230 44.286 70 37 1 7 76 2 69 6.33e-15 72.0
MS.gene51777.t1 AT3G57230 44.286 70 37 1 7 76 2 69 6.33e-15 72.0
MS.gene51777.t1 AT3G57390 47.143 70 35 1 7 76 2 69 6.61e-15 71.6
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 6.62e-15 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 6.62e-15 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 6.62e-15 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 6.62e-15 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 6.62e-15 70.1
MS.gene51777.t1 AT5G10140 47.826 69 35 1 9 76 2 70 9.47e-15 70.1
MS.gene51777.t1 AT5G51860 49.231 65 33 0 12 76 5 69 1.03e-14 70.9
MS.gene51777.t1 AT5G51860 49.231 65 33 0 12 76 5 69 1.19e-14 70.9
MS.gene51777.t1 AT3G57390 47.143 70 35 1 7 76 2 69 1.41e-14 71.2
MS.gene51777.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.43e-14 70.1
MS.gene51777.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.67e-14 69.7
MS.gene51777.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.82e-14 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 2.34e-14 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 2.34e-14 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 2.34e-14 70.1
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 2.53e-14 69.7
MS.gene51777.t1 AT5G62165 46.154 65 35 0 12 76 5 69 2.53e-14 69.7
MS.gene51777.t1 AT3G61120 47.143 70 35 1 7 76 2 69 3.91e-14 70.1
MS.gene51777.t1 AT2G22630 44.286 70 37 1 7 76 2 69 4.02e-14 69.7
MS.gene51777.t1 AT2G22630 44.286 70 37 1 7 76 2 69 4.02e-14 69.7
MS.gene51777.t1 AT1G69120 45.070 71 36 2 7 76 2 70 4.10e-14 69.7
MS.gene51777.t1 AT3G30260 43.662 71 37 2 7 76 2 70 5.40e-14 69.7
MS.gene51777.t1 AT1G47760 37.624 101 49 2 9 109 2 88 5.47e-14 68.6
MS.gene51777.t1 AT1G17310 33.929 168 70 4 8 170 47 178 5.80e-14 68.9
MS.gene51777.t1 AT1G26310 45.070 71 36 2 7 76 2 70 6.05e-14 69.7
MS.gene51777.t1 AT5G60910 45.070 71 36 2 7 76 2 70 6.68e-14 69.3
MS.gene51777.t1 AT1G17310 33.929 168 70 4 8 170 58 189 7.10e-14 68.9
MS.gene51777.t1 AT1G69120 45.070 71 36 2 7 76 2 70 9.38e-14 68.9
MS.gene51777.t1 AT4G11880 45.714 70 37 1 12 80 5 74 9.68e-14 67.8
MS.gene51777.t1 AT4G11880 45.714 70 37 1 12 80 5 74 9.68e-14 67.8
MS.gene51777.t1 AT4G11880 45.714 70 37 1 12 80 5 74 1.65e-13 67.8
MS.gene51777.t1 AT4G11880 45.714 70 37 1 12 80 5 74 1.65e-13 67.8
MS.gene51777.t1 AT5G15800 46.479 71 35 2 7 76 2 70 1.72e-13 68.2
MS.gene51777.t1 AT2G14210 43.662 71 37 2 7 76 2 70 1.92e-13 67.8
MS.gene51777.t1 AT5G23260 49.315 73 33 2 7 77 2 72 2.17e-13 67.8
MS.gene51777.t1 AT5G23260 49.315 73 33 2 7 77 2 72 2.17e-13 67.8
MS.gene51777.t1 AT5G23260 49.315 73 33 2 7 77 18 88 2.22e-13 68.2
MS.gene51777.t1 AT5G23260 49.315 73 33 2 7 77 18 88 2.47e-13 67.8
MS.gene51777.t1 AT2G14210 43.662 71 37 2 7 76 2 70 2.57e-13 67.4
MS.gene51777.t1 AT5G15800 46.479 71 35 2 7 76 2 70 2.68e-13 67.8
MS.gene51777.t1 AT2G22540 46.970 66 30 1 11 76 4 64 3.23e-13 67.4
MS.gene51777.t1 AT5G20240 45.455 77 36 3 7 79 2 76 3.50e-13 65.5
MS.gene51777.t1 AT3G58780 49.231 65 31 1 2 66 12 74 4.52e-13 67.0
MS.gene51777.t1 AT5G20240 45.455 77 36 3 7 79 2 76 4.83e-13 66.2
MS.gene51777.t1 AT5G65050 44.928 69 37 1 9 76 2 70 6.18e-13 65.5
MS.gene51777.t1 AT3G58780 49.231 65 31 1 2 66 12 74 6.56e-13 67.0
MS.gene51777.t1 AT5G65050 44.928 69 37 1 9 76 2 70 8.23e-13 65.1
MS.gene51777.t1 AT5G65050 44.928 69 37 1 9 76 2 70 9.90e-13 65.1
MS.gene51777.t1 AT5G65050 44.928 69 37 1 9 76 2 70 1.06e-12 64.7
MS.gene51777.t1 AT3G02310 45.070 71 36 2 7 76 2 70 1.14e-12 65.1
MS.gene51777.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.42e-12 64.7
MS.gene51777.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.67e-12 64.3
MS.gene51777.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.81e-12 64.3
MS.gene51777.t1 AT2G03710 44.444 72 36 3 7 76 2 71 2.39e-12 63.9
MS.gene51777.t1 AT3G02310 45.070 71 36 2 7 76 2 70 2.57e-12 65.1
MS.gene51777.t1 AT1G24260 37.500 96 54 3 7 98 2 95 3.19e-12 64.3
MS.gene51777.t1 AT1G24260 37.500 96 54 3 7 98 2 95 3.84e-12 64.3
MS.gene51777.t1 AT1G24260 43.662 71 37 2 7 76 2 70 4.59e-12 64.3
MS.gene51777.t1 AT2G03710 44.444 72 36 3 7 76 2 71 5.02e-12 64.3
MS.gene51777.t1 AT2G03710 44.444 72 36 3 7 76 2 71 5.12e-12 64.3
MS.gene51777.t1 AT1G71692 41.791 67 38 1 12 77 5 71 7.10e-12 63.2
MS.gene51777.t1 AT5G49420 35.106 94 54 2 5 91 3 96 7.41e-12 64.3
MS.gene51777.t1 AT1G18750 26.289 194 125 8 9 187 2 192 1.37e-11 63.9
MS.gene51777.t1 AT5G65070 39.130 69 41 1 9 76 2 70 1.38e-11 60.8
MS.gene51777.t1 AT1G18750 26.289 194 125 8 9 187 2 192 1.51e-11 63.5
MS.gene51777.t1 AT5G65070 29.677 155 86 8 9 152 2 144 2.09e-11 61.6
MS.gene51777.t1 AT1G18750 34.091 88 55 2 9 93 2 89 2.72e-11 63.2
MS.gene51777.t1 AT5G65080 28.804 184 117 7 9 183 9 187 3.36e-11 60.8
MS.gene51777.t1 AT5G65070 39.130 69 41 1 9 76 2 70 4.91e-11 60.8
MS.gene51777.t1 AT5G65070 39.130 69 41 1 9 76 2 70 5.21e-11 60.8

Find 54 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTATTCAAGAAGATTT+TGG 0.235888 7.3:-31819975 MS.gene51777:CDS
ATCTCAGTTTGTTGAGGATT+TGG 0.255732 7.3:+31819830 None:intergenic
ATGTTGCAACCTCATTTAAT+TGG 0.256996 7.3:-31819779 MS.gene51777:CDS
TGTTGATAGGAGTGCAATTC+AGG 0.259070 7.3:-31819924 MS.gene51777:CDS
TTTAATTGGCTTCAACAATA+TGG 0.267629 7.3:-31819765 MS.gene51777:CDS
AAATCATTACCAAGAGAAAA+TGG 0.314064 7.3:+31819881 None:intergenic
AATATGGAAGGAGGAGGATA+TGG 0.330377 7.3:-31819749 MS.gene51777:CDS
AGGCGTTCAAGGCTCAATTT+TGG 0.334747 7.3:-31820036 MS.gene51777:CDS
GCCCTATTCATTCTATCAAT+TGG 0.337270 7.3:+31820004 None:intergenic
GTCATAGATCGCTATCTCTC+TGG 0.357204 7.3:-31820205 MS.gene51777:CDS
CCTTGAACGCCTTGCACAAA+AGG 0.373825 7.3:+31820047 None:intergenic
GTTGAGGATTTGGCTGATAA+TGG 0.382243 7.3:+31819840 None:intergenic
TCCAATTGATAGAATGAATA+GGG 0.395255 7.3:-31820005 MS.gene51777:CDS
AATGAGCTTTGCACCCTTTG+TGG 0.404337 7.3:-31820301 MS.gene51777:CDS
TTGTTGCTCAACATGTTGAT+AGG 0.407276 7.3:-31819937 MS.gene51777:CDS
CTAGAAACTTCAATAGAATC+CGG 0.407513 7.3:+31819721 None:intergenic
ATTAAATGAGGTTGCAACAT+AGG 0.428043 7.3:+31819782 None:intergenic
GTCCAATTGATAGAATGAAT+AGG 0.444780 7.3:-31820006 MS.gene51777:CDS
TCTATGACCGTATCAACATT+TGG 0.448129 7.3:+31820220 None:intergenic
ATAATGGAGAGGGATGTTAG+AGG 0.448969 7.3:+31819856 None:intergenic
TTAAATGAGGTTGCAACATA+GGG 0.493554 7.3:+31819783 None:intergenic
AGCATTGAGCTCACGCACTT+TGG 0.503646 7.3:+31820129 None:intergenic
AGCAACATCTACACCACAAA+GGG 0.507315 7.3:+31820288 None:intergenic
CGGTCATCCAAATGTTGATA+CGG 0.514501 7.3:-31820227 MS.gene51777:CDS
TGTATTCTCACCAAGTGAAA+AGG 0.516561 7.3:-31820260 MS.gene51777:CDS
TAGAAACTTCAATAGAATCC+GGG 0.517746 7.3:+31819722 None:intergenic
TCATAGATCGCTATCTCTCT+GGG 0.520984 7.3:-31820204 MS.gene51777:CDS
ACCTTTCCTTCCGCTCGACA+TGG 0.533133 7.3:+31820420 None:intergenic
GTTGATAGGAGTGCAATTCA+GGG 0.537321 7.3:-31819923 MS.gene51777:CDS
ATTGGCTTCAACAATATGGA+AGG 0.538957 7.3:-31819761 MS.gene51777:CDS
ACCATGTCGAGCGGAAGGAA+AGG 0.542544 7.3:-31820421 MS.gene51777:CDS
GCTTTGAGAAAGTCACTTGG+AGG 0.544594 7.3:+31820350 None:intergenic
GCTCACGCACTTTGGCGCTA+CGG 0.549758 7.3:+31820137 None:intergenic
TTGTTGAAGCCAATTAAATG+AGG 0.551491 7.3:+31819770 None:intergenic
GAAAACATCTCAGTTTGTTG+AGG 0.554882 7.3:+31819824 None:intergenic
CTTCAACCATGTCGAGCGGA+AGG 0.578339 7.3:-31820426 None:intergenic
CTTTCTCAAAGCGTCGTAGT+GGG 0.584950 7.3:-31820339 MS.gene51777:CDS
AATCAACAACACACTGGACG+AGG 0.587728 7.3:-31820095 MS.gene51777:CDS
TTCAACAATATGGAAGGAGG+AGG 0.598809 7.3:-31819755 MS.gene51777:CDS
ACTTTCTCAAAGCGTCGTAG+TGG 0.602122 7.3:-31820340 MS.gene51777:CDS
GTGAGCCTCAATGAATTCCA+TGG 0.607397 7.3:+31820159 None:intergenic
GACGCTTTGAGAAAGTCACT+TGG 0.608413 7.3:+31820347 None:intergenic
AGAAACTTCAATAGAATCCG+GGG 0.619380 7.3:+31819723 None:intergenic
GGATTTGGCTGATAATGGAG+AGG 0.633381 7.3:+31819845 None:intergenic
TCGAGCGGAAGGAAAGGTCG+TGG 0.637409 7.3:-31820415 MS.gene51777:CDS
GGCTTCAACAATATGGAAGG+AGG 0.642874 7.3:-31819758 MS.gene51777:CDS
GTTTCAAATCAACAACACAC+TGG 0.650841 7.3:-31820101 MS.gene51777:CDS
TAGCACCATGGAATTCATTG+AGG 0.666363 7.3:-31820164 MS.gene51777:CDS
GAGCAACATCTACACCACAA+AGG 0.666690 7.3:+31820287 None:intergenic
GAAACTTCAATAGAATCCGG+GGG 0.679421 7.3:+31819724 None:intergenic
GATTTGGCTGATAATGGAGA+GGG 0.685158 7.3:+31819846 None:intergenic
TGTACTTCAACCATGTCGAG+CGG 0.700229 7.3:-31820430 None:intergenic
ACCGCAAAACAATAGCACCA+TGG 0.712731 7.3:-31820176 MS.gene51777:CDS
AAACTTCAATAGAATCCGGG+GGG 0.771286 7.3:+31819725 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTATTCAAGAAGATTT+TGG - chr7.3:31820173-31820192 MS.gene51777:CDS 20.0%
! AAATCATTACCAAGAGAAAA+TGG + chr7.3:31820270-31820289 None:intergenic 25.0%
! ATAGGGTTATGAAAAATTTG+TGG + chr7.3:31820351-31820370 None:intergenic 25.0%
! TCCAATTGATAGAATGAATA+GGG - chr7.3:31820143-31820162 MS.gene51777:CDS 25.0%
!! AAAGAAAATACCTTTTCACT+TGG + chr7.3:31819901-31819920 None:intergenic 25.0%
!! ATTATTCAAGAAGATTTTGG+TGG - chr7.3:31820176-31820195 MS.gene51777:CDS 25.0%
!! TTTAATTGGCTTCAACAATA+TGG - chr7.3:31820383-31820402 MS.gene51777:CDS 25.0%
!!! AGTGAAAAGGTATTTTCTTT+CGG - chr7.3:31819901-31819920 MS.gene51777:CDS 25.0%
ATGTTGCAACCTCATTTAAT+TGG - chr7.3:31820369-31820388 MS.gene51777:CDS 30.0%
ATTAAATGAGGTTGCAACAT+AGG + chr7.3:31820369-31820388 None:intergenic 30.0%
GTCCAATTGATAGAATGAAT+AGG - chr7.3:31820142-31820161 MS.gene51777:CDS 30.0%
TTAAATGAGGTTGCAACATA+GGG + chr7.3:31820368-31820387 None:intergenic 30.0%
TTGTTGAAGCCAATTAAATG+AGG + chr7.3:31820381-31820400 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr7.3:31819762-31819781 None:intergenic 30.0%
GCCCTATTCATTCTATCAAT+TGG + chr7.3:31820147-31820166 None:intergenic 35.0%
GTTTCAAATCAACAACACAC+TGG - chr7.3:31820047-31820066 MS.gene51777:CDS 35.0%
TCTATGACCGTATCAACATT+TGG + chr7.3:31819931-31819950 None:intergenic 35.0%
TGTATTCTCACCAAGTGAAA+AGG - chr7.3:31819888-31819907 MS.gene51777:CDS 35.0%
TTGTTGCTCAACATGTTGAT+AGG - chr7.3:31820211-31820230 MS.gene51777:CDS 35.0%
! ATTGGCTTCAACAATATGGA+AGG - chr7.3:31820387-31820406 MS.gene51777:CDS 35.0%
! CACACTTTTCCATTTTCTCT+TGG - chr7.3:31820258-31820277 MS.gene51777:CDS 35.0%
!! ATCTCAGTTTGTTGAGGATT+TGG + chr7.3:31820321-31820340 None:intergenic 35.0%
!! GAAAACATCTCAGTTTGTTG+AGG + chr7.3:31820327-31820346 None:intergenic 35.0%
AATATGGAAGGAGGAGGATA+TGG - chr7.3:31820399-31820418 MS.gene51777:CDS 40.0%
AGCAACATCTACACCACAAA+GGG + chr7.3:31819863-31819882 None:intergenic 40.0%
CGGTCATCCAAATGTTGATA+CGG - chr7.3:31819921-31819940 MS.gene51777:CDS 40.0%
GTTGAGGATTTGGCTGATAA+TGG + chr7.3:31820311-31820330 None:intergenic 40.0%
TAGCACCATGGAATTCATTG+AGG - chr7.3:31819984-31820003 MS.gene51777:CDS 40.0%
TCATAGATCGCTATCTCTCT+GGG - chr7.3:31819944-31819963 MS.gene51777:CDS 40.0%
TTCAACAATATGGAAGGAGG+AGG - chr7.3:31820393-31820412 MS.gene51777:CDS 40.0%
! ATAATGGAGAGGGATGTTAG+AGG + chr7.3:31820295-31820314 None:intergenic 40.0%
! GTTGATAGGAGTGCAATTCA+GGG - chr7.3:31820225-31820244 MS.gene51777:CDS 40.0%
! TGTTGATAGGAGTGCAATTC+AGG - chr7.3:31820224-31820243 MS.gene51777:CDS 40.0%
!! GATTTGGCTGATAATGGAGA+GGG + chr7.3:31820305-31820324 None:intergenic 40.0%
!! GTTCAAGGCTCAATTTTGGT+GGG - chr7.3:31820116-31820135 MS.gene51777:CDS 40.0%
!!! TCCATGGTGCTATTGTTTTG+CGG + chr7.3:31819976-31819995 None:intergenic 40.0%
AATCAACAACACACTGGACG+AGG - chr7.3:31820053-31820072 MS.gene51777:CDS 45.0%
AATGAGCTTTGCACCCTTTG+TGG - chr7.3:31819847-31819866 MS.gene51777:CDS 45.0%
ACCGCAAAACAATAGCACCA+TGG - chr7.3:31819972-31819991 MS.gene51777:CDS 45.0%
GAGCAACATCTACACCACAA+AGG + chr7.3:31819864-31819883 None:intergenic 45.0%
GGCTTCAACAATATGGAAGG+AGG - chr7.3:31820390-31820409 MS.gene51777:CDS 45.0%
GTCATAGATCGCTATCTCTC+TGG - chr7.3:31819943-31819962 MS.gene51777:CDS 45.0%
GTGAGCCTCAATGAATTCCA+TGG + chr7.3:31819992-31820011 None:intergenic 45.0%
! AGGCGTTCAAGGCTCAATTT+TGG - chr7.3:31820112-31820131 MS.gene51777:CDS 45.0%
! CGTTCAAGGCTCAATTTTGG+TGG - chr7.3:31820115-31820134 MS.gene51777:CDS 45.0%
!! ACTTTCTCAAAGCGTCGTAG+TGG - chr7.3:31819808-31819827 MS.gene51777:CDS 45.0%
!! CTTTCTCAAAGCGTCGTAGT+GGG - chr7.3:31819809-31819828 MS.gene51777:CDS 45.0%
!! GACGCTTTGAGAAAGTCACT+TGG + chr7.3:31819804-31819823 None:intergenic 45.0%
!! GCTTTGAGAAAGTCACTTGG+AGG + chr7.3:31819801-31819820 None:intergenic 45.0%
!! GGATTTGGCTGATAATGGAG+AGG + chr7.3:31820306-31820325 None:intergenic 45.0%
!! TGAGTTGAGCCTTTTGTGCA+AGG - chr7.3:31820092-31820111 MS.gene51777:CDS 45.0%
!!! ATGGTGCTATTGTTTTGCGG+TGG + chr7.3:31819973-31819992 None:intergenic 45.0%
!!! TGGTGCTATTGTTTTGCGGT+GGG + chr7.3:31819972-31819991 None:intergenic 45.0%
CCTTGAACGCCTTGCACAAA+AGG + chr7.3:31820104-31820123 None:intergenic 50.0%
CTGGACGAGGAGAAAAAGTG+TGG - chr7.3:31820066-31820085 MS.gene51777:CDS 50.0%
! AGCATTGAGCTCACGCACTT+TGG + chr7.3:31820022-31820041 None:intergenic 50.0%
!! CCTTTTGTGCAAGGCGTTCA+AGG - chr7.3:31820101-31820120 MS.gene51777:CDS 50.0%
GCTCACGCACTTTGGCGCTA+CGG + chr7.3:31820014-31820033 None:intergenic 60.0%
TCGAGCGGAAGGAAAGGTCG+TGG - chr7.3:31819733-31819752 MS.gene51777:CDS 60.0%
GGAGGAGGATATGGACCCCC+CGG - chr7.3:31820408-31820427 MS.gene51777:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 31819730 31820440 31819730 ID=MS.gene51777
chr7.3 mRNA 31819730 31820440 31819730 ID=MS.gene51777.t1;Parent=MS.gene51777
chr7.3 exon 31819730 31820440 31819730 ID=MS.gene51777.t1.exon1;Parent=MS.gene51777.t1
chr7.3 CDS 31819730 31820440 31819730 ID=cds.MS.gene51777.t1;Parent=MS.gene51777.t1
Gene Sequence

>MS.gene51777

ATGTCGAGCGGAAGGAAAGGTCGTGGTAGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTCCAAGTGACTTTCTCAAAGCGTCGTAGTGGGCTCTTCAAGAAAGTCAATGAGCTTTGCACCCTTTGTGGTGTAGATGTTGCTCTCGTTGTATTCTCACCAAGTGAAAAGGTATTTTCTTTCGGTCATCCAAATGTTGATACGGTCATAGATCGCTATCTCTCTGGGATCCCACCGCAAAACAATAGCACCATGGAATTCATTGAGGCTCACCGTAGCGCCAAAGTGCGTGAGCTCAATGCTGAGTTGTTTCAAATCAACAACACACTGGACGAGGAGAAAAAGTGTGGTGATGAGTTGAGCCTTTTGTGCAAGGCGTTCAAGGCTCAATTTTGGTGGGCTTGTCCAATTGATAGAATGAATAGGGCTCAGCTTGAATTATTCAAGAAGATTTTGGTGGAGCTTAAGAAACTTGTTGCTCAACATGTTGATAGGAGTGCAATTCAGGGTGCTTCTGCTCACACTTTTCCATTTTCTCTTGGTAATGATTTATCCTCTAACATCCCTCTCCATTATCAGCCAAATCCTCAACAAACTGAGATGTTTTCGCCACAAATTTTTCATAACCCTATGTTGCAACCTCATTTAATTGGCTTCAACAATATGGAAGGAGGAGGATATGGACCCCCCGGATTCTATTGA
Protein sequence

>MS.gene51777.t1

MSSGRKGRGSQKIEMKKMSNESNLQVTFSKRRSGLFKKVNELCTLCGVDVALVVFSPSEKVFSFGHPNVDTVIDRYLSGIPPQNNSTMEFIEAHRSAKVRELNAELFQINNTLDEEKKCGDELSLLCKAFKAQFWWACPIDRMNRAQLELFKKILVELKKLVAQHVDRSAIQGASAHTFPFSLGNDLSSNIPLHYQPNPQQTEMFSPQIFHNPMLQPHLIGFNNMEGGGYGPPGFY