Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51842.t1 | XP_003623977.1 | 93.7 | 317 | 20 | 0 | 1 | 317 | 1 | 317 | 3.10E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51842.t1 | O82775 | 42.4 | 311 | 117 | 9 | 9 | 317 | 6 | 256 | 1.2e-47 | 191.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51842.t1 | G7L4P7 | 93.7 | 317 | 20 | 0 | 1 | 317 | 1 | 317 | 2.2e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059436 | MS.gene51842 | 0.80053 | 1.38E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51842.t1 | MTR_7g077860 | 93.691 | 317 | 20 | 0 | 1 | 317 | 1 | 317 | 0.0 | 608 |
| MS.gene51842.t1 | MTR_7g077860 | 92.933 | 283 | 20 | 0 | 1 | 283 | 1 | 283 | 0.0 | 538 |
| MS.gene51842.t1 | MTR_2g027720 | 83.333 | 252 | 22 | 1 | 1 | 252 | 1 | 232 | 1.73e-147 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51842.t1 | AT2G45980 | 42.006 | 319 | 120 | 10 | 1 | 317 | 1 | 256 | 3.13e-63 | 201 |
| MS.gene51842.t1 | AT4G00355 | 41.987 | 312 | 125 | 10 | 6 | 313 | 3 | 262 | 2.17e-60 | 194 |
| MS.gene51842.t1 | AT4G00355 | 41.987 | 312 | 125 | 10 | 6 | 313 | 3 | 262 | 2.17e-60 | 194 |
| MS.gene51842.t1 | AT4G00355 | 41.987 | 312 | 125 | 10 | 6 | 313 | 3 | 262 | 2.17e-60 | 194 |
| MS.gene51842.t1 | AT4G00355 | 41.404 | 285 | 111 | 10 | 6 | 286 | 3 | 235 | 1.33e-48 | 164 |
Find 71 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGAGATTCAGAATGAATT+TGG | 0.214211 | 7.4:+28409979 | MS.gene51842:CDS |
| GGCACAACTCTACCAGATTT+TGG | 0.228578 | 7.4:+28410174 | MS.gene51842:CDS |
| GAAGAAAACTTGACATTAGA+AGG | 0.322875 | 7.4:+28410063 | MS.gene51842:CDS |
| CTCCTTTGCATGAGCATAGA+TGG | 0.333088 | 7.4:-28410445 | None:intergenic |
| CAGATCTTCCTTGCGGAGCT+TGG | 0.354733 | 7.4:+28410403 | MS.gene51842:CDS |
| ATCAACAGATTATCTATTCA+TGG | 0.363088 | 7.4:+28410135 | MS.gene51842:CDS |
| TGTCTCCTGCTCTGCTGATT+CGG | 0.382713 | 7.4:-28410316 | None:intergenic |
| AGTCTTCTCGCGGTAATGAC+TGG | 0.388623 | 7.4:+28409767 | MS.gene51842:CDS |
| AGCAGCAATGTCTGTTTCAC+TGG | 0.393072 | 7.4:-28410253 | None:intergenic |
| CAAAGGAGGCAAATACATTA+TGG | 0.393151 | 7.4:+28410460 | MS.gene51842:CDS |
| TTCATCCTTTCCACTAGGCT+TGG | 0.405829 | 7.4:-28410043 | None:intergenic |
| AAACTTGACATTAGAAGGAT+TGG | 0.407672 | 7.4:+28410068 | MS.gene51842:CDS |
| ATCTTCCTTGCGGAGCTTGG+TGG | 0.419362 | 7.4:+28410406 | MS.gene51842:CDS |
| TTTGACAGTGATAAATCATC+AGG | 0.420814 | 7.4:-28410348 | None:intergenic |
| CACATCTTTGAGTCGAATCA+TGG | 0.436493 | 7.4:-28411138 | None:intergenic |
| AAAGAGCTTTACAACTTAAG+TGG | 0.462236 | 7.4:+28410544 | MS.gene51842:CDS |
| TCAACTTATGCAGCTGCTCC+TGG | 0.470344 | 7.4:+28409811 | MS.gene51842:CDS |
| GGATGTGTCAAAGGAGTTTG+AGG | 0.473894 | 7.4:+28410089 | MS.gene51842:CDS |
| GCTTGGTCAACGCTGGCGAC+AGG | 0.477014 | 7.4:+28410521 | MS.gene51842:CDS |
| GAAGTGACCAGACATGAATA+AGG | 0.494471 | 7.4:-28409908 | None:intergenic |
| GTCTTCTCGCGGTAATGACT+GGG | 0.502839 | 7.4:+28409768 | MS.gene51842:CDS |
| TTCATTGCAGCAACAGTGAT+GGG | 0.502883 | 7.4:+28410489 | MS.gene51842:CDS |
| AACTCAACTTCACGTGGACC+AGG | 0.507089 | 7.4:-28409829 | None:intergenic |
| TGTTTCCACAGGCAAGGAGC+AGG | 0.508812 | 7.4:+28411105 | MS.gene51842:intron |
| CTCAAAGATGTGATCGTTGG+TGG | 0.510999 | 7.4:+28411149 | MS.gene51842:CDS |
| TTATGAAGACAAAAGATGGC+AGG | 0.513000 | 7.4:+28409724 | None:intergenic |
| TATTCATGGAAAACAGTTTG+AGG | 0.519571 | 7.4:+28410149 | MS.gene51842:CDS |
| GGAAGAGCTTTCTCTGATCA+AGG | 0.520300 | 7.4:-28411186 | None:intergenic |
| TGATCAAGGAGCCACGGCGG+TGG | 0.522980 | 7.4:-28411172 | None:intergenic |
| TTCATGCTTACTTGGTGGAA+AGG | 0.529697 | 7.4:-28409932 | None:intergenic |
| TCAAACGCCTTATTCATGTC+TGG | 0.529833 | 7.4:+28409901 | MS.gene51842:CDS |
| ATGGCAGGAACTGAAGATGA+AGG | 0.531057 | 7.4:+28409739 | MS.gene51842:CDS |
| TGCAGCAACAGTGATGGGTT+TGG | 0.532584 | 7.4:+28410494 | MS.gene51842:CDS |
| TTTCATTGCAGCAACAGTGA+TGG | 0.533829 | 7.4:+28410488 | MS.gene51842:CDS |
| AACAACCGAATCAGCAGAGC+AGG | 0.534322 | 7.4:+28410311 | MS.gene51842:CDS |
| TAAGCATGAAAACTTGCCAT+TGG | 0.534678 | 7.4:+28409945 | MS.gene51842:CDS |
| AGAAGGATTGGATGTGTCAA+AGG | 0.536048 | 7.4:+28410080 | MS.gene51842:CDS |
| ATCAGCAGAGCAGGAGACAA+AGG | 0.541008 | 7.4:+28410320 | MS.gene51842:CDS |
| CAAAGATATCGCCTCTGTAG+AGG | 0.545508 | 7.4:+28410005 | MS.gene51842:CDS |
| CGCTTCCACCAAGCTCCGCA+AGG | 0.554434 | 7.4:-28410411 | None:intergenic |
| CATGGAAAACAGTTTGAGGA+AGG | 0.557886 | 7.4:+28410153 | MS.gene51842:CDS |
| GCTCCGCAAGGAAGATCTGA+AGG | 0.560737 | 7.4:-28410399 | None:intergenic |
| GTGATGGGTTTGGTGATGCT+TGG | 0.561745 | 7.4:+28410504 | MS.gene51842:CDS |
| TCCACGTGAAGTTGAGTTGA+AGG | 0.562439 | 7.4:+28409834 | MS.gene51842:CDS |
| TGGTGATGCTTGGTCAACGC+TGG | 0.565434 | 7.4:+28410514 | MS.gene51842:CDS |
| TGCGGAGCTTGGTGGAAGCG+AGG | 0.567411 | 7.4:+28410414 | MS.gene51842:CDS |
| ACATCTTTGAGTCGAATCAT+GGG | 0.569536 | 7.4:-28411137 | None:intergenic |
| CGACTCAAAGATGTGATCGT+TGG | 0.574960 | 7.4:+28411146 | MS.gene51842:CDS |
| CATCTATGCTCATGCAAAGG+AGG | 0.578296 | 7.4:+28410446 | MS.gene51842:CDS |
| TGGCAGGAACTGAAGATGAA+GGG | 0.579156 | 7.4:+28409740 | MS.gene51842:CDS |
| GCAGCAATGTCTGTTTCACT+GGG | 0.581872 | 7.4:-28410252 | None:intergenic |
| TGAGTTGAAGGATGATGACA+AGG | 0.594626 | 7.4:+28409846 | MS.gene51842:CDS |
| AGCGACCAAGCCTAGTGGAA+AGG | 0.597200 | 7.4:+28410038 | MS.gene51842:CDS |
| GGCAGGAACTGAAGATGAAG+GGG | 0.599526 | 7.4:+28409741 | MS.gene51842:CDS |
| TCCTTCAACTCAACTTCACG+TGG | 0.602249 | 7.4:-28409835 | None:intergenic |
| CTCCATCTATGCTCATGCAA+AGG | 0.603944 | 7.4:+28410443 | MS.gene51842:CDS |
| GCAAGTCAGTATTTCTGATG+AGG | 0.612309 | 7.4:+28410566 | MS.gene51842:CDS |
| TCACTATAGTCAGTTTCCAA+TGG | 0.627762 | 7.4:-28409961 | None:intergenic |
| AACCCTTCAGATCTTCCTTG+CGG | 0.630132 | 7.4:+28410396 | MS.gene51842:CDS |
| GAAGAAGCGACCAAGCCTAG+TGG | 0.639637 | 7.4:+28410033 | MS.gene51842:CDS |
| ATCGTTGGTGGCCACCGCCG+TGG | 0.649963 | 7.4:+28411161 | MS.gene51842:CDS |
| CTCTGATCAAGGAGCCACGG+CGG | 0.656435 | 7.4:-28411175 | None:intergenic |
| TTCTCGCGGTAATGACTGGG+AGG | 0.656632 | 7.4:+28409771 | MS.gene51842:CDS |
| TTTCTCTGATCAAGGAGCCA+CGG | 0.661567 | 7.4:-28411178 | None:intergenic |
| TTCACCGAGTTAAATTTCAG+CGG | 0.667738 | 7.4:-28411207 | None:intergenic |
| CTCCGCAAGGAAGATCTGAA+GGG | 0.679694 | 7.4:-28410398 | None:intergenic |
| GAAGGGGAAAAGTCTTCTCG+CGG | 0.683817 | 7.4:+28409757 | MS.gene51842:CDS |
| CTTTGCATGAGCATAGATGG+AGG | 0.694461 | 7.4:-28410442 | None:intergenic |
| TTGAAGGATGATGACAAGGA+AGG | 0.695939 | 7.4:+28409850 | MS.gene51842:CDS |
| TTCTTCACGAGCCTCTACAG+AGG | 0.708502 | 7.4:-28410016 | None:intergenic |
| CAGCAATGTCTGTTTCACTG+GGG | 0.782536 | 7.4:-28410251 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATATTCATTCTTCTA+AGG | + | chr7.4:28410591-28410610 | MS.gene51842:intron | 15.0% |
| !! | TATAATGTTATGCATAAAGA+TGG | + | chr7.4:28410723-28410742 | MS.gene51842:intron | 20.0% |
| !! | TTTGTTAAAAATGAAGCATA+AGG | + | chr7.4:28410629-28410648 | MS.gene51842:intron | 20.0% |
| !!! | ACTTTAAAAATGAAGGTTAT+GGG | + | chr7.4:28410904-28410923 | MS.gene51842:intron | 20.0% |
| !!! | GCAATGTAATATTTATTTTG+TGG | + | chr7.4:28410937-28410956 | MS.gene51842:intron | 20.0% |
| !!! | TACTTTAAAAATGAAGGTTA+TGG | + | chr7.4:28410903-28410922 | MS.gene51842:intron | 20.0% |
| ! | ATCAACAGATTATCTATTCA+TGG | + | chr7.4:28410135-28410154 | MS.gene51842:CDS | 25.0% |
| ! | ATCTCTCAACAAATCATATA+AGG | + | chr7.4:28411017-28411036 | MS.gene51842:intron | 25.0% |
| ! | TATGCATAACATTATAAACG+AGG | - | chr7.4:28410719-28410738 | None:intergenic | 25.0% |
| !! | ATTTTTACTAGCACATCATA+AGG | + | chr7.4:28410806-28410825 | MS.gene51842:intron | 25.0% |
| !! | TACTCGTACTTTAAAAATGA+AGG | + | chr7.4:28410897-28410916 | MS.gene51842:intron | 25.0% |
| AAACTTGACATTAGAAGGAT+TGG | + | chr7.4:28410068-28410087 | MS.gene51842:CDS | 30.0% | |
| AAAGAGCTTTACAACTTAAG+TGG | + | chr7.4:28410544-28410563 | MS.gene51842:CDS | 30.0% | |
| AGAGATTTATGTGTCTGTAT+AGG | - | chr7.4:28411003-28411022 | None:intergenic | 30.0% | |
| AGTGAGATTCAGAATGAATT+TGG | + | chr7.4:28409979-28409998 | MS.gene51842:CDS | 30.0% | |
| GAAGAAAACTTGACATTAGA+AGG | + | chr7.4:28410063-28410082 | MS.gene51842:CDS | 30.0% | |
| TATTCATGGAAAACAGTTTG+AGG | + | chr7.4:28410149-28410168 | MS.gene51842:CDS | 30.0% | |
| TTTGACAGTGATAAATCATC+AGG | - | chr7.4:28410351-28410370 | None:intergenic | 30.0% | |
| ! | GGAAAGAATTGTATTTTGCA+GGG | - | chr7.4:28410233-28410252 | None:intergenic | 30.0% |
| ! | TTTTCAGTCAAACCAAAATC+TGG | - | chr7.4:28410189-28410208 | None:intergenic | 30.0% |
| !! | GGTTGATAGTGTCAATTATT+TGG | + | chr7.4:28410744-28410763 | MS.gene51842:intron | 30.0% |
| !!! | TTTTGGTTTGACTGAAAAAG+AGG | + | chr7.4:28410191-28410210 | MS.gene51842:CDS | 30.0% |
| ACATCTTTGAGTCGAATCAT+GGG | - | chr7.4:28411140-28411159 | None:intergenic | 35.0% | |
| CAAAGGAGGCAAATACATTA+TGG | + | chr7.4:28410460-28410479 | MS.gene51842:CDS | 35.0% | |
| TAAGCATGAAAACTTGCCAT+TGG | + | chr7.4:28409945-28409964 | MS.gene51842:CDS | 35.0% | |
| TCACTATAGTCAGTTTCCAA+TGG | - | chr7.4:28409964-28409983 | None:intergenic | 35.0% | |
| TTATGTGTCTGTATAGGATG+AGG | - | chr7.4:28410997-28411016 | None:intergenic | 35.0% | |
| ! | AAGTTTTCATGCTTACTTGG+TGG | - | chr7.4:28409940-28409959 | None:intergenic | 35.0% |
| ! | GGGAAAGAATTGTATTTTGC+AGG | - | chr7.4:28410234-28410253 | None:intergenic | 35.0% |
| ! | TTTTCTTCATCCTTTCCACT+AGG | - | chr7.4:28410051-28410070 | None:intergenic | 35.0% |
| !! | ATGAGTTTGTTGTACACAAC+TGG | - | chr7.4:28410788-28410807 | None:intergenic | 35.0% |
| !!! | AGGGTTTTGTTTGTCATCTT+TGG | - | chr7.4:28410382-28410401 | None:intergenic | 35.0% |
| AGAAGGATTGGATGTGTCAA+AGG | + | chr7.4:28410080-28410099 | MS.gene51842:CDS | 40.0% | |
| CACATCTTTGAGTCGAATCA+TGG | - | chr7.4:28411141-28411160 | None:intergenic | 40.0% | |
| CATGGAAAACAGTTTGAGGA+AGG | + | chr7.4:28410153-28410172 | MS.gene51842:CDS | 40.0% | |
| CCAATAGTGATTGTTTCCAC+AGG | + | chr7.4:28411094-28411113 | MS.gene51842:intron | 40.0% | |
| CCTGTGGAAACAATCACTAT+TGG | - | chr7.4:28411097-28411116 | None:intergenic | 40.0% | |
| GAAGTGACCAGACATGAATA+AGG | - | chr7.4:28409911-28409930 | None:intergenic | 40.0% | |
| TTCATTGCAGCAACAGTGAT+GGG | + | chr7.4:28410489-28410508 | MS.gene51842:CDS | 40.0% | |
| TTGAAGGATGATGACAAGGA+AGG | + | chr7.4:28409850-28409869 | MS.gene51842:CDS | 40.0% | |
| TTTCATTGCAGCAACAGTGA+TGG | + | chr7.4:28410488-28410507 | MS.gene51842:CDS | 40.0% | |
| ! | GCAAGTCAGTATTTCTGATG+AGG | + | chr7.4:28410566-28410585 | MS.gene51842:CDS | 40.0% |
| ! | GGCAAGTTTTCATGCTTACT+TGG | - | chr7.4:28409943-28409962 | None:intergenic | 40.0% |
| ! | TCAAACGCCTTATTCATGTC+TGG | + | chr7.4:28409901-28409920 | MS.gene51842:CDS | 40.0% |
| ! | TGAGTTGAAGGATGATGACA+AGG | + | chr7.4:28409846-28409865 | MS.gene51842:CDS | 40.0% |
| ! | TTCATGCTTACTTGGTGGAA+AGG | - | chr7.4:28409935-28409954 | None:intergenic | 40.0% |
| AACCCTTCAGATCTTCCTTG+CGG | + | chr7.4:28410396-28410415 | MS.gene51842:CDS | 45.0% | |
| AGCAGCAATGTCTGTTTCAC+TGG | - | chr7.4:28410256-28410275 | None:intergenic | 45.0% | |
| AGTGATTGTTTCCACAGGCA+AGG | + | chr7.4:28411099-28411118 | MS.gene51842:intron | 45.0% | |
| ATGGCAGGAACTGAAGATGA+AGG | + | chr7.4:28409739-28409758 | MS.gene51842:CDS | 45.0% | |
| CAAAGATATCGCCTCTGTAG+AGG | + | chr7.4:28410005-28410024 | MS.gene51842:CDS | 45.0% | |
| CAGCAATGTCTGTTTCACTG+GGG | - | chr7.4:28410254-28410273 | None:intergenic | 45.0% | |
| CATCTATGCTCATGCAAAGG+AGG | + | chr7.4:28410446-28410465 | MS.gene51842:CDS | 45.0% | |
| CGACTCAAAGATGTGATCGT+TGG | + | chr7.4:28411146-28411165 | MS.gene51842:CDS | 45.0% | |
| CTCAAAGATGTGATCGTTGG+TGG | + | chr7.4:28411149-28411168 | MS.gene51842:CDS | 45.0% | |
| CTCCATCTATGCTCATGCAA+AGG | + | chr7.4:28410443-28410462 | MS.gene51842:CDS | 45.0% | |
| CTCCTTTGCATGAGCATAGA+TGG | - | chr7.4:28410448-28410467 | None:intergenic | 45.0% | |
| CTTTGCATGAGCATAGATGG+AGG | - | chr7.4:28410445-28410464 | None:intergenic | 45.0% | |
| GCAGCAATGTCTGTTTCACT+GGG | - | chr7.4:28410255-28410274 | None:intergenic | 45.0% | |
| GGAAGAGCTTTCTCTGATCA+AGG | - | chr7.4:28411189-28411208 | None:intergenic | 45.0% | |
| GGATGTGTCAAAGGAGTTTG+AGG | + | chr7.4:28410089-28410108 | MS.gene51842:CDS | 45.0% | |
| TCCTTCAACTCAACTTCACG+TGG | - | chr7.4:28409838-28409857 | None:intergenic | 45.0% | |
| TGGCAGGAACTGAAGATGAA+GGG | + | chr7.4:28409740-28409759 | MS.gene51842:CDS | 45.0% | |
| TTCATCCTTTCCACTAGGCT+TGG | - | chr7.4:28410046-28410065 | None:intergenic | 45.0% | |
| TTTCTCTGATCAAGGAGCCA+CGG | - | chr7.4:28411181-28411200 | None:intergenic | 45.0% | |
| ! | GGCACAACTCTACCAGATTT+TGG | + | chr7.4:28410174-28410193 | MS.gene51842:CDS | 45.0% |
| !! | TCCACGTGAAGTTGAGTTGA+AGG | + | chr7.4:28409834-28409853 | MS.gene51842:CDS | 45.0% |
| AACAACCGAATCAGCAGAGC+AGG | + | chr7.4:28410311-28410330 | MS.gene51842:CDS | 50.0% | |
| AACTCAACTTCACGTGGACC+AGG | - | chr7.4:28409832-28409851 | None:intergenic | 50.0% | |
| AGTCTTCTCGCGGTAATGAC+TGG | + | chr7.4:28409767-28409786 | MS.gene51842:CDS | 50.0% | |
| ATCAGCAGAGCAGGAGACAA+AGG | + | chr7.4:28410320-28410339 | MS.gene51842:CDS | 50.0% | |
| CTCCGCAAGGAAGATCTGAA+GGG | - | chr7.4:28410401-28410420 | None:intergenic | 50.0% | |
| GAAGGGGAAAAGTCTTCTCG+CGG | + | chr7.4:28409757-28409776 | MS.gene51842:CDS | 50.0% | |
| GGCAGGAACTGAAGATGAAG+GGG | + | chr7.4:28409741-28409760 | MS.gene51842:CDS | 50.0% | |
| GTCTTCTCGCGGTAATGACT+GGG | + | chr7.4:28409768-28409787 | MS.gene51842:CDS | 50.0% | |
| TCAACTTATGCAGCTGCTCC+TGG | + | chr7.4:28409811-28409830 | MS.gene51842:CDS | 50.0% | |
| TTCTTCACGAGCCTCTACAG+AGG | - | chr7.4:28410019-28410038 | None:intergenic | 50.0% | |
| ! | TGTCTCCTGCTCTGCTGATT+CGG | - | chr7.4:28410319-28410338 | None:intergenic | 50.0% |
| !! | GTGATGGGTTTGGTGATGCT+TGG | + | chr7.4:28410504-28410523 | MS.gene51842:CDS | 50.0% |
| !! | TGCAGCAACAGTGATGGGTT+TGG | + | chr7.4:28410494-28410513 | MS.gene51842:CDS | 50.0% |
| AGCGACCAAGCCTAGTGGAA+AGG | + | chr7.4:28410038-28410057 | MS.gene51842:CDS | 55.0% | |
| ATCTTCCTTGCGGAGCTTGG+TGG | + | chr7.4:28410406-28410425 | MS.gene51842:CDS | 55.0% | |
| CAGATCTTCCTTGCGGAGCT+TGG | + | chr7.4:28410403-28410422 | MS.gene51842:CDS | 55.0% | |
| GAAGAAGCGACCAAGCCTAG+TGG | + | chr7.4:28410033-28410052 | MS.gene51842:CDS | 55.0% | |
| GCTCCGCAAGGAAGATCTGA+AGG | - | chr7.4:28410402-28410421 | None:intergenic | 55.0% | |
| TGTTTCCACAGGCAAGGAGC+AGG | + | chr7.4:28411105-28411124 | MS.gene51842:intron | 55.0% | |
| TTCTCGCGGTAATGACTGGG+AGG | + | chr7.4:28409771-28409790 | MS.gene51842:CDS | 55.0% | |
| ! | TGGTGATGCTTGGTCAACGC+TGG | + | chr7.4:28410514-28410533 | MS.gene51842:CDS | 55.0% |
| AGCATCCTGCTCCTTGCCTG+TGG | - | chr7.4:28411113-28411132 | None:intergenic | 60.0% | |
| CTCTGATCAAGGAGCCACGG+CGG | - | chr7.4:28411178-28411197 | None:intergenic | 60.0% | |
| CGCTTCCACCAAGCTCCGCA+AGG | - | chr7.4:28410414-28410433 | None:intergenic | 65.0% | |
| GCTTGGTCAACGCTGGCGAC+AGG | + | chr7.4:28410521-28410540 | MS.gene51842:CDS | 65.0% | |
| TGATCAAGGAGCCACGGCGG+TGG | - | chr7.4:28411175-28411194 | None:intergenic | 65.0% | |
| ! | TGCGGAGCTTGGTGGAAGCG+AGG | + | chr7.4:28410414-28410433 | MS.gene51842:CDS | 65.0% |
| !! | ATCGTTGGTGGCCACCGCCG+TGG | + | chr7.4:28411161-28411180 | MS.gene51842:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 28409739 | 28411220 | 28409739 | ID=MS.gene51842 |
| chr7.4 | mRNA | 28409739 | 28411220 | 28409739 | ID=MS.gene51842.t1;Parent=MS.gene51842 |
| chr7.4 | exon | 28409739 | 28410587 | 28409739 | ID=MS.gene51842.t1.exon1;Parent=MS.gene51842.t1 |
| chr7.4 | CDS | 28409739 | 28410587 | 28409739 | ID=cds.MS.gene51842.t1;Parent=MS.gene51842.t1 |
| chr7.4 | exon | 28411116 | 28411220 | 28411116 | ID=MS.gene51842.t1.exon2;Parent=MS.gene51842.t1 |
| chr7.4 | CDS | 28411116 | 28411220 | 28411116 | ID=cds.MS.gene51842.t1;Parent=MS.gene51842.t1 |
| Gene Sequence |
| Protein sequence |
