Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059436.t1 | KEH30842.1 | 98.1 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 8.70E-149 | 536.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059436.t1 | Q9ZVF6 | 75.1 | 265 | 65 | 1 | 2 | 266 | 5 | 268 | 1.1e-118 | 427.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059436.t1 | A0A072UM45 | 98.1 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 6.3e-149 | 536.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050379 | MS.gene059436 | 0.808934 | 2.43E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene059436 | 0.837319 | 5.58E-57 | -1.69E-46 |
| MS.gene056530 | MS.gene059436 | 0.820916 | 5.33E-53 | -1.69E-46 |
| MS.gene05878 | MS.gene059436 | 0.800453 | 1.43E-48 | -1.69E-46 |
| MS.gene05884 | MS.gene059436 | 0.820973 | 5.17E-53 | -1.69E-46 |
| MS.gene059436 | MS.gene059514 | 0.912397 | 2.04E-83 | -1.69E-46 |
| MS.gene059436 | MS.gene063125 | 0.809663 | 1.69E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene065021 | 0.800493 | 1.40E-48 | -1.69E-46 |
| MS.gene059436 | MS.gene066012 | 0.834786 | 2.45E-56 | -1.69E-46 |
| MS.gene059436 | MS.gene067785 | 0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene07212 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene072227 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene073500 | 0.817784 | 2.76E-52 | -1.69E-46 |
| MS.gene059436 | MS.gene074124 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene24408 | 0.842193 | 3.00E-58 | -1.69E-46 |
| MS.gene059436 | MS.gene36749 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene39037 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene39743 | 0.8212 | 4.58E-53 | -1.69E-46 |
| MS.gene059436 | MS.gene41704 | 0.812816 | 3.50E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene43617 | 0.813297 | 2.75E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene44909 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene45552 | 0.802516 | 5.41E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene46055 | 0.846179 | 2.56E-59 | -1.69E-46 |
| MS.gene059436 | MS.gene47049 | 0.801596 | 8.36E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene51539 | 0.831394 | 1.71E-55 | -1.69E-46 |
| MS.gene059436 | MS.gene51842 | 0.80053 | 1.38E-48 | -1.69E-46 |
| MS.gene059436 | MS.gene51894 | 0.810957 | 8.90E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene51935 | 0.813405 | 2.60E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene52120 | 0.812861 | 3.43E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene52994 | 0.813483 | 2.50E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene53391 | 0.802952 | 4.40E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene55699 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene56079 | 0.987846 | 9.34E-172 | -1.69E-46 |
| MS.gene059436 | MS.gene56080 | 0.964434 | 2.54E-123 | -1.69E-46 |
| MS.gene059436 | MS.gene62676 | 0.815438 | 9.24E-52 | -1.69E-46 |
| MS.gene059436 | MS.gene62677 | 0.82006 | 8.37E-53 | -1.69E-46 |
| MS.gene059436 | MS.gene67131 | 0.844967 | 5.45E-59 | -1.69E-46 |
| MS.gene059436 | MS.gene68617 | 0.806124 | 9.58E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene71447 | 0.832927 | 7.15E-56 | -1.69E-46 |
| MS.gene059436 | MS.gene72373 | 0.808369 | 3.20E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene73644 | 0.831801 | 1.36E-55 | -1.69E-46 |
| MS.gene059436 | MS.gene74935 | 0.814866 | 1.24E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene78383 | 0.805409 | 1.35E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene79698 | 0.808925 | 2.44E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene80167 | 0.810951 | 8.93E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene82233 | 0.80914 | 2.19E-50 | -1.69E-46 |
| MS.gene059436 | MS.gene83063 | 0.828815 | 7.29E-55 | -1.69E-46 |
| MS.gene059436 | MS.gene84175 | 0.847894 | 8.66E-60 | -1.69E-46 |
| MS.gene059436 | MS.gene85954 | 0.813422 | 2.58E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene89256 | 0.844645 | 6.65E-59 | -1.69E-46 |
| MS.gene059436 | MS.gene92118 | 0.814596 | 1.42E-51 | -1.69E-46 |
| MS.gene059436 | MS.gene94266 | 0.83314 | 6.33E-56 | -1.69E-46 |
| MS.gene059436 | MS.gene95833 | 0.848976 | 4.35E-60 | -1.69E-46 |
| MS.gene059436 | MS.gene98636 | 0.829795 | 4.21E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54295 | MS.gene059436 | PPI |
| MS.gene002583 | MS.gene059436 | PPI |
| MS.gene01565 | MS.gene059436 | PPI |
| MS.gene004252 | MS.gene059436 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059436.t1 | MTR_4g084560 | 98.120 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 0.0 | 546 |
| MS.gene059436.t1 | MTR_4g084560 | 98.120 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 0.0 | 546 |
| MS.gene059436.t1 | MTR_4g084560 | 94.161 | 274 | 6 | 2 | 1 | 266 | 1 | 272 | 0.0 | 528 |
| MS.gene059436.t1 | MTR_4g084560 | 94.361 | 266 | 5 | 1 | 1 | 266 | 1 | 256 | 0.0 | 517 |
| MS.gene059436.t1 | MTR_4g084560 | 97.872 | 235 | 5 | 0 | 32 | 266 | 1 | 235 | 2.15e-176 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059436.t1 | AT2G01490 | 75.094 | 265 | 65 | 1 | 2 | 266 | 5 | 268 | 5.36e-150 | 420 |
| MS.gene059436.t1 | AT2G01490 | 75.094 | 265 | 65 | 1 | 2 | 266 | 5 | 268 | 5.36e-150 | 420 |
Find 65 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGCCACCATATTAAA+TGG | 0.254138 | 4.4:-28249167 | MS.gene059436:CDS |
| TCTTCTTCTGAGAAGGCTTC+AGG | 0.276208 | 4.4:-28250280 | MS.gene059436:CDS |
| GCAGTCCATGTATATATTTA+AGG | 0.276974 | 4.4:-28250218 | MS.gene059436:intron |
| CCAAAGGCAACCATTTAATA+TGG | 0.291161 | 4.4:+28249157 | None:intergenic |
| GGTTGCCTTTGGGCAATTCC+TGG | 0.303363 | 4.4:-28249146 | MS.gene059436:CDS |
| CCATATTAAATGGTTGCCTT+TGG | 0.320118 | 4.4:-28249157 | MS.gene059436:CDS |
| GCAAATGGGCAGCAGAAAAT+TGG | 0.320664 | 4.4:-28248682 | None:intergenic |
| TACATGGACTGCATGATTAC+TGG | 0.333257 | 4.4:+28250229 | None:intergenic |
| TGAAGTTAAAGCCGGGTCTT+TGG | 0.346038 | 4.4:-28248911 | MS.gene059436:CDS |
| CATATTAAATGGTTGCCTTT+GGG | 0.356536 | 4.4:-28249156 | MS.gene059436:CDS |
| TTATTGTTAGAGAAAGCATT+TGG | 0.358097 | 4.4:-28250875 | MS.gene059436:intron |
| TCAGGTTTGATGAGCTCCTT+AGG | 0.378116 | 4.4:-28250262 | MS.gene059436:CDS |
| AAAGATTTCCTTCTTCTTTG+AGG | 0.389116 | 4.4:-28250988 | MS.gene059436:CDS |
| TATTGTTAGAGAAAGCATTT+GGG | 0.389370 | 4.4:-28250874 | MS.gene059436:intron |
| TTATTGAGGGAAAGTTCCTT+TGG | 0.396538 | 4.4:+28250830 | None:intergenic |
| CACAGCCCTGTGCATGTTTG+TGG | 0.396548 | 4.4:+28249200 | None:intergenic |
| ATTGACAGCAACCTGGCATC+GGG | 0.398754 | 4.4:-28249268 | MS.gene059436:intron |
| GAGAAAGCATTTGGGGATGA+TGG | 0.415329 | 4.4:-28250866 | MS.gene059436:CDS |
| GACCCGGCTTTAACTTCAAT+AGG | 0.423086 | 4.4:+28248916 | None:intergenic |
| TTGGTTACCTTGAGAGTTGA+AGG | 0.437086 | 4.4:+28251340 | None:intergenic |
| AAGATTTCCTTCTTCTTTGA+GGG | 0.437800 | 4.4:-28250987 | MS.gene059436:intron |
| CCCTGTGCATGTTTGTGGTT+CGG | 0.455033 | 4.4:+28249205 | None:intergenic |
| TAGATACTGTTGGCTGCAAA+TGG | 0.458033 | 4.4:-28248697 | MS.gene059436:CDS |
| TATAAATAAACGAGTTATCC+TGG | 0.469410 | 4.4:+28249228 | None:intergenic |
| GGGTCTTTGGTTGTCATCCA+TGG | 0.470343 | 4.4:-28248898 | MS.gene059436:CDS |
| ATGAATACCCTCAAAGAAGA+AGG | 0.472672 | 4.4:+28250980 | None:intergenic |
| GAACTTTCCCTCAATAAAGT+TGG | 0.479271 | 4.4:-28250824 | MS.gene059436:CDS |
| TACCATGGCCAACTTTATTG+AGG | 0.480797 | 4.4:+28250816 | None:intergenic |
| GAAGAAAACTTCTTGAATGC+AGG | 0.483645 | 4.4:+28250298 | None:intergenic |
| ACCATGGCCAACTTTATTGA+GGG | 0.484932 | 4.4:+28250817 | None:intergenic |
| AAAATAGAGGCGGTGGAAGA+AGG | 0.486490 | 4.4:+28251158 | None:intergenic |
| TTGAAGGATTCAAGCTGATC+CGG | 0.488379 | 4.4:+28251356 | None:intergenic |
| TATTGACAGCAACCTGGCAT+CGG | 0.490867 | 4.4:-28249269 | MS.gene059436:intron |
| GTTCCTATTGAAGTTAAAGC+CGG | 0.491121 | 4.4:-28248919 | MS.gene059436:CDS |
| ACCGAACCACAAACATGCAC+AGG | 0.509362 | 4.4:-28249206 | MS.gene059436:CDS |
| TACTGGTCTCTTGTAACCTA+AGG | 0.518263 | 4.4:+28250246 | None:intergenic |
| GGTGGAGAAAATAGAGGCGG+TGG | 0.519274 | 4.4:+28251151 | None:intergenic |
| AACATGCACAGGGCTGTGGC+TGG | 0.521401 | 4.4:-28249195 | MS.gene059436:CDS |
| CACGATGGGTTTGCTTACAC+CGG | 0.549691 | 4.4:-28251375 | None:intergenic |
| CTTGAATCCTTCAACTCTCA+AGG | 0.549943 | 4.4:-28251347 | MS.gene059436:intron |
| ATGTACCTTAAATATATACA+TGG | 0.552780 | 4.4:+28250213 | None:intergenic |
| GATAAAGAGGATGGAGCAGT+TGG | 0.552962 | 4.4:-28251195 | MS.gene059436:CDS |
| AAATTGATAGCATGATAAAG+AGG | 0.555437 | 4.4:-28251208 | MS.gene059436:CDS |
| CACAAACATGCACAGGGCTG+TGG | 0.556191 | 4.4:-28249199 | MS.gene059436:CDS |
| TCCCTCAATAAAGTTGGCCA+TGG | 0.556630 | 4.4:-28250818 | MS.gene059436:intron |
| TGATAGCATGATAAAGAGGA+TGG | 0.560483 | 4.4:-28251204 | MS.gene059436:CDS |
| GGGTGAAGTAGTGCCTCACC+AGG | 0.563698 | 4.4:-28249246 | MS.gene059436:CDS |
| TTCCTATTGAAGTTAAAGCC+GGG | 0.573559 | 4.4:-28248918 | MS.gene059436:CDS |
| TGACAGCAACCTGGCATCGG+GGG | 0.589195 | 4.4:-28249266 | MS.gene059436:intron |
| AGATTCTTCAGAGATGAAGA+TGG | 0.593662 | 4.4:-28248988 | MS.gene059436:CDS |
| ATGGCAATCTTATCCACCAA+AGG | 0.607737 | 4.4:-28248879 | MS.gene059436:intron |
| AAGATGGTGTCAAATTTGAT+CGG | 0.610693 | 4.4:-28248972 | MS.gene059436:CDS |
| AGATACTGTTGGCTGCAAAT+GGG | 0.618414 | 4.4:-28248696 | MS.gene059436:CDS |
| AAGGCAACCATTTAATATGG+TGG | 0.618923 | 4.4:+28249160 | None:intergenic |
| TTGCACGTGGTAGATACTGT+TGG | 0.622851 | 4.4:-28248707 | MS.gene059436:CDS |
| TTTGGTGGATAAGATTGCCA+TGG | 0.624104 | 4.4:+28248881 | None:intergenic |
| CCGAACCACAAACATGCACA+GGG | 0.624383 | 4.4:-28249205 | MS.gene059436:CDS |
| ATGGATGACAACCAAAGACC+CGG | 0.637824 | 4.4:+28248900 | None:intergenic |
| TGGTAACTTAAAGCAGCCAA+AGG | 0.650430 | 4.4:-28250846 | MS.gene059436:CDS |
| ATTGTTAGAGAAAGCATTTG+GGG | 0.650933 | 4.4:-28250873 | MS.gene059436:intron |
| TTGACAGCAACCTGGCATCG+GGG | 0.657122 | 4.4:-28249267 | MS.gene059436:intron |
| TTTGGTGGAGAAAATAGAGG+CGG | 0.659579 | 4.4:+28251148 | None:intergenic |
| ATAAACGAGTTATCCTGGTG+AGG | 0.674544 | 4.4:+28249233 | None:intergenic |
| GAGATCCAGGAATTGCCCAA+AGG | 0.691404 | 4.4:+28249141 | None:intergenic |
| ACATGCATACAGCTTGCACG+TGG | 0.710583 | 4.4:-28248720 | MS.gene059436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTTCATATAAAAAAAAT+GGG | + | chr4.4:28250409-28250428 | None:intergenic | 10.0% |
| !! | TTATCTTCATATAAAAAAAA+TGG | + | chr4.4:28250410-28250429 | None:intergenic | 10.0% |
| !! | AAACTTAAATAATGAAAAGT+AGG | + | chr4.4:28248972-28248991 | None:intergenic | 15.0% |
| !! | ATATTATGTGTATTTGAATT+AGG | - | chr4.4:28249275-28249294 | MS.gene059436:intron | 15.0% |
| !! | TCAAATACACATAATATTAA+AGG | + | chr4.4:28249272-28249291 | None:intergenic | 15.0% |
| !!! | GATATAATCTAGAAATATTT+TGG | - | chr4.4:28250339-28250358 | MS.gene059436:intron | 15.0% |
| !!! | TCAATAAAAATTTTGTAATC+TGG | + | chr4.4:28250771-28250790 | None:intergenic | 15.0% |
| !!! | TCATAAAAATTCAATCTTTT+TGG | - | chr4.4:28249093-28249112 | MS.gene059436:intron | 15.0% |
| !! | ATGTACCTTAAATATATACA+TGG | + | chr4.4:28249844-28249863 | None:intergenic | 20.0% |
| !!! | AAATCTTTTTGATCATAAGA+TGG | + | chr4.4:28251114-28251133 | None:intergenic | 20.0% |
| !!! | AAGTTAAGAATGAATTTTGA+AGG | + | chr4.4:28251266-28251285 | None:intergenic | 20.0% |
| !!! | AATCTAGAAATATTTTGGAT+TGG | - | chr4.4:28250344-28250363 | MS.gene059436:intron | 20.0% |
| !!! | CTATTTTTCTTAGTTTGTAT+TGG | - | chr4.4:28249598-28249617 | MS.gene059436:intron | 20.0% |
| !!! | TTATCTTCTGTTTTATTGTA+TGG | - | chr4.4:28251020-28251039 | MS.gene059436:CDS | 20.0% |
| ! | AAAGATATATATCACAGACA+TGG | - | chr4.4:28250659-28250678 | MS.gene059436:intron | 25.0% |
| ! | AAAGTTTCCATGTATTAAAC+CGG | + | chr4.4:28250166-28250185 | None:intergenic | 25.0% |
| ! | AAGTAATTAAGTAACTAACC+TGG | + | chr4.4:28248934-28248953 | None:intergenic | 25.0% |
| ! | AATGAAAAGTAGGAGATAAA+GGG | + | chr4.4:28248962-28248981 | None:intergenic | 25.0% |
| ! | AGTTATTGTAACCATGAATT+CGG | + | chr4.4:28249894-28249913 | None:intergenic | 25.0% |
| ! | CTTCATATAAAAAAAATGGG+CGG | + | chr4.4:28250406-28250425 | None:intergenic | 25.0% |
| ! | TAAAGTAAGGATACATTATC+AGG | + | chr4.4:28251220-28251239 | None:intergenic | 25.0% |
| ! | TAATGAAAAGTAGGAGATAA+AGG | + | chr4.4:28248963-28248982 | None:intergenic | 25.0% |
| ! | TATAAATAAACGAGTTATCC+TGG | + | chr4.4:28250829-28250848 | None:intergenic | 25.0% |
| !! | AAATTGATAGCATGATAAAG+AGG | - | chr4.4:28248846-28248865 | MS.gene059436:intron | 25.0% |
| !! | GTTTAATACATGGAAACTTT+TGG | - | chr4.4:28250166-28250185 | MS.gene059436:intron | 25.0% |
| !! | TTGAATCTAACTTTTCCTTT+TGG | - | chr4.4:28249685-28249704 | MS.gene059436:intron | 25.0% |
| !!! | ACTTAATTTGTTCTCTGATT+GGG | - | chr4.4:28250037-28250056 | MS.gene059436:intron | 25.0% |
| !!! | CAATGTTGTTTTTGTTTTTC+TGG | - | chr4.4:28249971-28249990 | MS.gene059436:intron | 25.0% |
| !!! | CTTTTAAAATTGCCATATGA+TGG | - | chr4.4:28250701-28250720 | MS.gene059436:intron | 25.0% |
| !!! | GAATTATTTTAGCAAACCTT+TGG | + | chr4.4:28251194-28251213 | None:intergenic | 25.0% |
| !!! | TACTTAATTTGTTCTCTGAT+TGG | - | chr4.4:28250036-28250055 | MS.gene059436:intron | 25.0% |
| !!! | TAGTTTGTATTGGTTTGTTT+GGG | - | chr4.4:28249608-28249627 | MS.gene059436:intron | 25.0% |
| !!! | TATTGAATCGTTTTCTAGTA+AGG | - | chr4.4:28248820-28248839 | MS.gene059436:intron | 25.0% |
| !!! | TATTGTTAGAGAAAGCATTT+GGG | - | chr4.4:28249180-28249199 | MS.gene059436:CDS | 25.0% |
| !!! | TCTTTAATTTGCAATCAAAC+TGG | - | chr4.4:28250102-28250121 | MS.gene059436:intron | 25.0% |
| !!! | TTAGTTTGTATTGGTTTGTT+TGG | - | chr4.4:28249607-28249626 | MS.gene059436:intron | 25.0% |
| !!! | TTATTGTTAGAGAAAGCATT+TGG | - | chr4.4:28249179-28249198 | MS.gene059436:CDS | 25.0% |
| AAAGATTTCCTTCTTCTTTG+AGG | - | chr4.4:28249066-28249085 | MS.gene059436:intron | 30.0% | |
| AAGATTTCCTTCTTCTTTGA+GGG | - | chr4.4:28249067-28249086 | MS.gene059436:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | - | chr4.4:28249442-28249461 | MS.gene059436:intron | 30.0% | |
| ACACATAATATTAAAGGCAG+AGG | + | chr4.4:28249266-28249285 | None:intergenic | 30.0% | |
| ATATGATGAGAGAAGTGAAA+GGG | + | chr4.4:28248745-28248764 | None:intergenic | 30.0% | |
| CATATTAAATGGTTGCCTTT+GGG | - | chr4.4:28250898-28250917 | MS.gene059436:intron | 30.0% | |
| CATTGATGCATGATTGTAAA+AGG | + | chr4.4:28250455-28250474 | None:intergenic | 30.0% | |
| GCAGTCCATGTATATATTTA+AGG | - | chr4.4:28249836-28249855 | MS.gene059436:intron | 30.0% | |
| GTTTGGATTGACTAATTTGA+GGG | + | chr4.4:28249534-28249553 | None:intergenic | 30.0% | |
| TAACAACATATATGCCACTA+AGG | + | chr4.4:28250226-28250245 | None:intergenic | 30.0% | |
| TACTAAGATACTCCATCATA+TGG | + | chr4.4:28250716-28250735 | None:intergenic | 30.0% | |
| TACTTTATAGCATAGAAGGA+AGG | - | chr4.4:28251233-28251252 | MS.gene059436:CDS | 30.0% | |
| TATATGATGAGAGAAGTGAA+AGG | + | chr4.4:28248746-28248765 | None:intergenic | 30.0% | |
| TCCTTACTTTATAGCATAGA+AGG | - | chr4.4:28251229-28251248 | MS.gene059436:CDS | 30.0% | |
| TCCTTCTATGCTATAAAGTA+AGG | + | chr4.4:28251233-28251252 | None:intergenic | 30.0% | |
| TGTTTGGATTGACTAATTTG+AGG | + | chr4.4:28249535-28249554 | None:intergenic | 30.0% | |
| ! | AACTAGTCTGTATAATCTGA+TGG | - | chr4.4:28250309-28250328 | MS.gene059436:CDS | 30.0% |
| ! | AAGATGGTGTCAAATTTGAT+CGG | - | chr4.4:28251082-28251101 | MS.gene059436:intron | 30.0% |
| ! | AATCTAACTTTTCCTTTTGG+TGG | - | chr4.4:28249688-28249707 | MS.gene059436:intron | 30.0% |
| ! | AATTTTTATTGACAGCAACC+TGG | - | chr4.4:28250779-28250798 | MS.gene059436:intron | 30.0% |
| ! | CGTTTTCCTAAACAAACTAA+GGG | + | chr4.4:28249559-28249578 | None:intergenic | 30.0% |
| ! | CTGTATACTTTTCTGATTGA+TGG | - | chr4.4:28250565-28250584 | MS.gene059436:intron | 30.0% |
| ! | GTAACGTTTTTCTTTCTTTC+TGG | - | chr4.4:28250942-28250961 | MS.gene059436:intron | 30.0% |
| ! | GTTATTTCAACATTGCAGTT+TGG | - | chr4.4:28250366-28250385 | MS.gene059436:intron | 30.0% |
| ! | TATTTGAATTAGGCTCTGAT+TGG | - | chr4.4:28249285-28249304 | MS.gene059436:intron | 30.0% |
| ! | TTTTGATCATAAGATGGTGA+TGG | + | chr4.4:28251108-28251127 | None:intergenic | 30.0% |
| !! | AATTAAAGAAGTATCCACAC+AGG | + | chr4.4:28250091-28250110 | None:intergenic | 30.0% |
| !! | ATTGTTAGAGAAAGCATTTG+GGG | - | chr4.4:28249181-28249200 | MS.gene059436:CDS | 30.0% |
| !! | GTTGTTTTCATAAGTTATCC+TGG | - | chr4.4:28249431-28249450 | MS.gene059436:intron | 30.0% |
| !! | TAAGTAACTAACCTGGTTTT+TGG | + | chr4.4:28248927-28248946 | None:intergenic | 30.0% |
| !! | TATTATGCCGGTTTAATACA+TGG | - | chr4.4:28250156-28250175 | MS.gene059436:intron | 30.0% |
| !! | TATTGGTTTGTTTGGGATTT+GGG | - | chr4.4:28249615-28249634 | MS.gene059436:intron | 30.0% |
| !! | TTTCTGGTTTATTTGTTACC+TGG | - | chr4.4:28250958-28250977 | MS.gene059436:intron | 30.0% |
| !!! | GTTGTTTTTGTTTTTCTGGA+GGG | - | chr4.4:28249975-28249994 | MS.gene059436:intron | 30.0% |
| !!! | TCTTAACTTTTTTTCCTGTG+TGG | - | chr4.4:28251277-28251296 | MS.gene059436:intron | 30.0% |
| !!! | TGTTGTTTTTGTTTTTCTGG+AGG | - | chr4.4:28249974-28249993 | MS.gene059436:intron | 30.0% |
| !!! | TTATTTTAGCAAACCTTTGG+TGG | + | chr4.4:28251191-28251210 | None:intergenic | 30.0% |
| !!! | TTGTTTTTGTTTTTCTGGAG+GGG | - | chr4.4:28249976-28249995 | MS.gene059436:intron | 30.0% |
| AAGGCAACCATTTAATATGG+TGG | + | chr4.4:28250897-28250916 | None:intergenic | 35.0% | |
| AGATTCTTCAGAGATGAAGA+TGG | - | chr4.4:28251066-28251085 | MS.gene059436:intron | 35.0% | |
| AGTCGAAGTTCAAATAATCC+AGG | + | chr4.4:28250979-28250998 | None:intergenic | 35.0% | |
| ATGAATACCCTCAAAGAAGA+AGG | + | chr4.4:28249077-28249096 | None:intergenic | 35.0% | |
| ATTCAATCATATGCATGCAC+AGG | - | chr4.4:28248788-28248807 | MS.gene059436:intron | 35.0% | |
| ATTGTATGGTTGTTGCAGAT+GGG | - | chr4.4:28251034-28251053 | MS.gene059436:intron | 35.0% | |
| CAAAGCAACTTTCATTAAGC+TGG | + | chr4.4:28250289-28250308 | None:intergenic | 35.0% | |
| CCAAAGGCAACCATTTAATA+TGG | + | chr4.4:28250900-28250919 | None:intergenic | 35.0% | |
| CCATATTAAATGGTTGCCTT+TGG | - | chr4.4:28250897-28250916 | MS.gene059436:intron | 35.0% | |
| GAACTTTCCCTCAATAAAGT+TGG | - | chr4.4:28249230-28249249 | MS.gene059436:CDS | 35.0% | |
| GAAGAAAACTTCTTGAATGC+AGG | + | chr4.4:28249759-28249778 | None:intergenic | 35.0% | |
| GAAGATGCCACCATATTAAA+TGG | - | chr4.4:28250887-28250906 | MS.gene059436:intron | 35.0% | |
| GTATACAGCAATACTAGCTA+CGG | + | chr4.4:28250553-28250572 | None:intergenic | 35.0% | |
| GTTCCTATTGAAGTTAAAGC+CGG | - | chr4.4:28251135-28251154 | MS.gene059436:intron | 35.0% | |
| TAAACAAACTAAGGGCTGTT+TGG | + | chr4.4:28249551-28249570 | None:intergenic | 35.0% | |
| TACATGTCCATAAACTTTCC+AGG | + | chr4.4:28249452-28249471 | None:intergenic | 35.0% | |
| TATTGCATTCCAGTCAAAAC+AGG | + | chr4.4:28250503-28250522 | None:intergenic | 35.0% | |
| TATTGTATGGTTGTTGCAGA+TGG | - | chr4.4:28251033-28251052 | MS.gene059436:intron | 35.0% | |
| TGATAGCATGATAAAGAGGA+TGG | - | chr4.4:28248850-28248869 | MS.gene059436:intron | 35.0% | |
| TGTGCATGCATATGATTGAA+TGG | + | chr4.4:28248789-28248808 | None:intergenic | 35.0% | |
| TTATTGAGGGAAAGTTCCTT+TGG | + | chr4.4:28249227-28249246 | None:intergenic | 35.0% | |
| TTCCTATTGAAGTTAAAGCC+GGG | - | chr4.4:28251136-28251155 | MS.gene059436:intron | 35.0% | |
| ! | GCGTTTTCCTAAACAAACTA+AGG | + | chr4.4:28249560-28249579 | None:intergenic | 35.0% |
| ! | GGAAAACTGTGTTATTATGC+CGG | - | chr4.4:28250144-28250163 | MS.gene059436:intron | 35.0% |
| ! | GTTTTCAGTTTCCGAATTCA+TGG | - | chr4.4:28249880-28249899 | MS.gene059436:intron | 35.0% |
| ! | TATTTTCTCCACCAAAAACC+AGG | - | chr4.4:28248913-28248932 | MS.gene059436:CDS | 35.0% |
| ! | TCTGGTTATGATAATGATCG+CGG | + | chr4.4:28250753-28250772 | None:intergenic | 35.0% |
| !! | AAACAGCCCTTAGTTTGTTT+AGG | - | chr4.4:28249550-28249569 | MS.gene059436:intron | 35.0% |
| !! | GAAGTTTTCTTCTTCTGAGA+AGG | - | chr4.4:28249767-28249786 | MS.gene059436:intron | 35.0% |
| !! | GTATTGGTTTGTTTGGGATT+TGG | - | chr4.4:28249614-28249633 | MS.gene059436:intron | 35.0% |
| !!! | AACTTTTTTTCCTGTGTGGA+TGG | - | chr4.4:28251281-28251300 | MS.gene059436:intron | 35.0% |
| !!! | GTTTTTGGTGGAGAAAATAG+AGG | + | chr4.4:28248912-28248931 | None:intergenic | 35.0% |
| ACCATGGCCAACTTTATTGA+GGG | + | chr4.4:28249240-28249259 | None:intergenic | 40.0% | |
| ATAAACGAGTTATCCTGGTG+AGG | + | chr4.4:28250824-28250843 | None:intergenic | 40.0% | |
| ATGGCAATCTTATCCACCAA+AGG | - | chr4.4:28251175-28251194 | MS.gene059436:CDS | 40.0% | |
| CTTGAATCCTTCAACTCTCA+AGG | - | chr4.4:28248707-28248726 | MS.gene059436:CDS | 40.0% | |
| TACCATGGCCAACTTTATTG+AGG | + | chr4.4:28249241-28249260 | None:intergenic | 40.0% | |
| TGGTAACTTAAAGCAGCCAA+AGG | - | chr4.4:28249208-28249227 | MS.gene059436:CDS | 40.0% | |
| TTGAAGGATTCAAGCTGATC+CGG | + | chr4.4:28248701-28248720 | None:intergenic | 40.0% | |
| TTGGTTACCTTGAGAGTTGA+AGG | + | chr4.4:28248717-28248736 | None:intergenic | 40.0% | |
| TTTGGTGGAGAAAATAGAGG+CGG | + | chr4.4:28248909-28248928 | None:intergenic | 40.0% | |
| ! | AGATACTGTTGGCTGCAAAT+GGG | - | chr4.4:28251358-28251377 | MS.gene059436:CDS | 40.0% |
| ! | CATGTCTCGATTTTGTAGAC+TGG | + | chr4.4:28251319-28251338 | None:intergenic | 40.0% |
| ! | TACATGGACTGCATGATTAC+TGG | + | chr4.4:28249828-28249847 | None:intergenic | 40.0% |
| ! | TACTGGTCTCTTGTAACCTA+AGG | + | chr4.4:28249811-28249830 | None:intergenic | 40.0% |
| ! | TAGATACTGTTGGCTGCAAA+TGG | - | chr4.4:28251357-28251376 | MS.gene059436:CDS | 40.0% |
| ! | TTTGGTGGATAAGATTGCCA+TGG | + | chr4.4:28251176-28251195 | None:intergenic | 40.0% |
| !! | AACTTTTCCTTTTGGTGGAC+TGG | - | chr4.4:28249693-28249712 | MS.gene059436:intron | 40.0% |
| !! | GTAACTAACCTGGTTTTTGG+TGG | + | chr4.4:28248924-28248943 | None:intergenic | 40.0% |
| !!! | ACGTTACTTTTGTGAGATCC+AGG | + | chr4.4:28250929-28250948 | None:intergenic | 40.0% |
| !!! | ACTTTTCCTTTTGGTGGACT+GGG | - | chr4.4:28249694-28249713 | MS.gene059436:intron | 40.0% |
| AAAACGCGTGCAAGATAGTG+GGG | - | chr4.4:28249573-28249592 | MS.gene059436:intron | 45.0% | |
| AAAATAGAGGCGGTGGAAGA+AGG | + | chr4.4:28248899-28248918 | None:intergenic | 45.0% | |
| AACAGTCTCACCAGTGCTTA+TGG | - | chr4.4:28249499-28249518 | MS.gene059436:intron | 45.0% | |
| ATGGATGACAACCAAAGACC+CGG | + | chr4.4:28251157-28251176 | None:intergenic | 45.0% | |
| GAAAACGCGTGCAAGATAGT+GGG | - | chr4.4:28249572-28249591 | MS.gene059436:intron | 45.0% | |
| GATAAAGAGGATGGAGCAGT+TGG | - | chr4.4:28248859-28248878 | MS.gene059436:intron | 45.0% | |
| GATGAGAGAAGTGAAAGGGT+TGG | + | chr4.4:28248741-28248760 | None:intergenic | 45.0% | |
| GCATTCCAGTCAAAACAGGT+TGG | + | chr4.4:28250499-28250518 | None:intergenic | 45.0% | |
| GGAGAAGGGGTTGTATGATT+TGG | - | chr4.4:28249997-28250016 | MS.gene059436:intron | 45.0% | |
| GGTGTGTGATTGAATCTGCT+TGG | - | chr4.4:28250123-28250142 | MS.gene059436:intron | 45.0% | |
| GTATCTACTGCCATAAGCAC+TGG | + | chr4.4:28249512-28249531 | None:intergenic | 45.0% | |
| TATTGACAGCAACCTGGCAT+CGG | - | chr4.4:28250785-28250804 | MS.gene059436:intron | 45.0% | |
| TCAGGTTTGATGAGCTCCTT+AGG | - | chr4.4:28249792-28249811 | MS.gene059436:intron | 45.0% | |
| TCCACACAGGTAACAGCATT+CGG | + | chr4.4:28250078-28250097 | None:intergenic | 45.0% | |
| TCCCTCAATAAAGTTGGCCA+TGG | - | chr4.4:28249236-28249255 | MS.gene059436:CDS | 45.0% | |
| TGAAGTTAAAGCCGGGTCTT+TGG | - | chr4.4:28251143-28251162 | MS.gene059436:CDS | 45.0% | |
| TTAAAGGCAGAGGCTTACCA+TGG | + | chr4.4:28249256-28249275 | None:intergenic | 45.0% | |
| TTGCACGTGGTAGATACTGT+TGG | - | chr4.4:28251347-28251366 | MS.gene059436:intron | 45.0% | |
| ! | AGACTGTTTGCGAGAGCATA+CGG | + | chr4.4:28249487-28249506 | None:intergenic | 45.0% |
| ! | GACCCGGCTTTAACTTCAAT+AGG | + | chr4.4:28251141-28251160 | None:intergenic | 45.0% |
| ! | TCTTCTTCTGAGAAGGCTTC+AGG | - | chr4.4:28249774-28249793 | MS.gene059436:intron | 45.0% |
| ! | TTCCAGTCAAAACAGGTTGG+AGG | + | chr4.4:28250496-28250515 | None:intergenic | 45.0% |
| !! | GAGAAAGCATTTGGGGATGA+TGG | - | chr4.4:28249188-28249207 | MS.gene059436:CDS | 45.0% |
| !! | GAGAAGTGAAAGGGTTGGTT+TGG | + | chr4.4:28248736-28248755 | None:intergenic | 45.0% |
| !! | TGTTTTTCTGGAGGGGAGAA+GGG | - | chr4.4:28249983-28250002 | MS.gene059436:intron | 45.0% |
| !! | TTGTTTTTCTGGAGGGGAGA+AGG | - | chr4.4:28249982-28250001 | MS.gene059436:intron | 45.0% |
| ACAGGTAACAGCATTCGGGT+GGG | + | chr4.4:28250073-28250092 | None:intergenic | 50.0% | |
| ACATGCATACAGCTTGCACG+TGG | - | chr4.4:28251334-28251353 | MS.gene059436:intron | 50.0% | |
| ACCGAACCACAAACATGCAC+AGG | - | chr4.4:28250848-28250867 | MS.gene059436:CDS | 50.0% | |
| ATTGACAGCAACCTGGCATC+GGG | - | chr4.4:28250786-28250805 | MS.gene059436:intron | 50.0% | |
| CACAATCCCAGTCCACCAAA+AGG | + | chr4.4:28249703-28249722 | None:intergenic | 50.0% | |
| CCACACAGGTAACAGCATTC+GGG | + | chr4.4:28250077-28250096 | None:intergenic | 50.0% | |
| CCACTAAGGATGAACGACAC+AGG | + | chr4.4:28250212-28250231 | None:intergenic | 50.0% | |
| CCCTGTGCATGTTTGTGGTT+CGG | + | chr4.4:28250852-28250871 | None:intergenic | 50.0% | |
| CCGAACCACAAACATGCACA+GGG | - | chr4.4:28250849-28250868 | MS.gene059436:CDS | 50.0% | |
| GAGATCCAGGAATTGCCCAA+AGG | + | chr4.4:28250916-28250935 | None:intergenic | 50.0% | |
| GGAAAACGCGTGCAAGATAG+TGG | - | chr4.4:28249571-28249590 | MS.gene059436:intron | 50.0% | |
| GGGTCTTTGGTTGTCATCCA+TGG | - | chr4.4:28251156-28251175 | MS.gene059436:CDS | 50.0% | |
| TTCAAAGCTGCCATCCACAC+AGG | + | chr4.4:28251294-28251313 | None:intergenic | 50.0% | |
| ! | CCTGTGTCGTTCATCCTTAG+TGG | - | chr4.4:28250209-28250228 | MS.gene059436:intron | 50.0% |
| ! | GTCAAAACAGGTTGGAGGCT+TGG | + | chr4.4:28250491-28250510 | None:intergenic | 50.0% |
| !! | GTTTTTCTGGAGGGGAGAAG+GGG | - | chr4.4:28249984-28250003 | MS.gene059436:intron | 50.0% |
| !!! | AGCCTCCAACCTGTTTTGAC+TGG | - | chr4.4:28250491-28250510 | MS.gene059436:intron | 50.0% |
| CACAAACATGCACAGGGCTG+TGG | - | chr4.4:28250855-28250874 | MS.gene059436:CDS | 55.0% | |
| CACAGCCCTGTGCATGTTTG+TGG | + | chr4.4:28250857-28250876 | None:intergenic | 55.0% | |
| CACAGGTAACAGCATTCGGG+TGG | + | chr4.4:28250074-28250093 | None:intergenic | 55.0% | |
| CAGGTAACAGCATTCGGGTG+GGG | + | chr4.4:28250072-28250091 | None:intergenic | 55.0% | |
| CCCGAATGCTGTTACCTGTG+TGG | - | chr4.4:28250074-28250093 | MS.gene059436:intron | 55.0% | |
| GGTGGAGAAAATAGAGGCGG+TGG | + | chr4.4:28248906-28248925 | None:intergenic | 55.0% | |
| GGTTGCCTTTGGGCAATTCC+TGG | - | chr4.4:28250908-28250927 | MS.gene059436:intron | 55.0% | |
| TTGACAGCAACCTGGCATCG+GGG | - | chr4.4:28250787-28250806 | MS.gene059436:intron | 55.0% | |
| AACATGCACAGGGCTGTGGC+TGG | - | chr4.4:28250859-28250878 | MS.gene059436:CDS | 60.0% | |
| ACTACTTCACCCCCGATGCC+AGG | + | chr4.4:28250800-28250819 | None:intergenic | 60.0% | |
| GGGTGAAGTAGTGCCTCACC+AGG | - | chr4.4:28250808-28250827 | MS.gene059436:intron | 60.0% | |
| ! | TGACAGCAACCTGGCATCGG+GGG | - | chr4.4:28250788-28250807 | MS.gene059436:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 28248683 | 28251393 | 28248683 | ID=MS.gene059436 |
| chr4.4 | mRNA | 28248683 | 28251393 | 28248683 | ID=MS.gene059436.t1;Parent=MS.gene059436 |
| chr4.4 | exon | 28251348 | 28251393 | 28251348 | ID=MS.gene059436.t1.exon1;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28251348 | 28251393 | 28251348 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28251142 | 28251266 | 28251142 | ID=MS.gene059436.t1.exon2;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28251142 | 28251266 | 28251142 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28250988 | 28251048 | 28250988 | ID=MS.gene059436.t1.exon3;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28250988 | 28251048 | 28250988 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28250819 | 28250887 | 28250819 | ID=MS.gene059436.t1.exon4;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28250819 | 28250887 | 28250819 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28250219 | 28250337 | 28250219 | ID=MS.gene059436.t1.exon5;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28250219 | 28250337 | 28250219 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28249135 | 28249282 | 28249135 | ID=MS.gene059436.t1.exon6;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28249135 | 28249282 | 28249135 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28248880 | 28249024 | 28248880 | ID=MS.gene059436.t1.exon7;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28248880 | 28249024 | 28248880 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| chr4.4 | exon | 28248683 | 28248769 | 28248683 | ID=MS.gene059436.t1.exon8;Parent=MS.gene059436.t1 |
| chr4.4 | CDS | 28248683 | 28248769 | 28248683 | ID=cds.MS.gene059436.t1;Parent=MS.gene059436.t1 |
| Gene Sequence |
| Protein sequence |
