Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51896.t1 | BAM84273.1 | 79.4 | 247 | 18 | 1 | 59 | 272 | 208 | 454 | 4.60E-105 | 391 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51896.t1 | P52914 | 54.3 | 247 | 79 | 2 | 59 | 271 | 208 | 454 | 5.2e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51896.t1 | M1VNS8 | 79.4 | 247 | 18 | 1 | 59 | 272 | 208 | 454 | 3.3e-105 | 391.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055206 | MS.gene51896 | 0.803876 | 2.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51896.t1 | MTR_7g085200 | 74.182 | 275 | 35 | 3 | 34 | 272 | 182 | 456 | 2.65e-127 | 369 |
| MS.gene51896.t1 | MTR_7g085200 | 74.182 | 275 | 35 | 3 | 34 | 272 | 180 | 454 | 4.63e-127 | 369 |
| MS.gene51896.t1 | MTR_7g085150 | 51.935 | 310 | 104 | 7 | 7 | 271 | 168 | 477 | 2.24e-89 | 273 |
| MS.gene51896.t1 | MTR_7g085120 | 51.456 | 309 | 106 | 6 | 7 | 271 | 147 | 455 | 1.30e-88 | 271 |
| MS.gene51896.t1 | MTR_7g085180 | 46.602 | 309 | 122 | 5 | 7 | 272 | 147 | 455 | 3.51e-85 | 262 |
| MS.gene51896.t1 | MTR_4g036220 | 47.249 | 309 | 105 | 7 | 7 | 271 | 138 | 432 | 4.65e-77 | 240 |
| MS.gene51896.t1 | MTR_6g033000 | 48.872 | 266 | 99 | 3 | 34 | 262 | 217 | 482 | 1.35e-74 | 235 |
| MS.gene51896.t1 | MTR_7g085090 | 46.947 | 262 | 104 | 3 | 34 | 260 | 204 | 465 | 2.27e-67 | 216 |
| MS.gene51896.t1 | MTR_7g085150 | 47.925 | 265 | 93 | 7 | 7 | 226 | 168 | 432 | 5.74e-61 | 199 |
| MS.gene51896.t1 | MTR_7g085160 | 47.973 | 148 | 66 | 2 | 124 | 271 | 82 | 218 | 6.56e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51896.t1 | AT5G18280 | 43.182 | 264 | 113 | 3 | 34 | 260 | 207 | 470 | 2.24e-62 | 204 |
| MS.gene51896.t1 | AT3G04080 | 44.061 | 261 | 109 | 4 | 37 | 260 | 209 | 469 | 3.27e-59 | 195 |
Find 66 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCTACGATACGAATTT+TGG | 0.153561 | 7.4:+22111342 | None:intergenic |
| GTACATGAAACGATCAAATT+TGG | 0.196830 | 7.4:+22109874 | None:intergenic |
| CAGTATACATTGTTTGTTGA+TGG | 0.280650 | 7.4:-22111211 | MS.gene51896:CDS |
| CCCAACTTTGGGTGAGGCCT+TGG | 0.288541 | 7.4:-22112550 | MS.gene51896:CDS |
| AAATCATTATCTTTAGAAAC+AGG | 0.321205 | 7.4:-22112759 | MS.gene51896:CDS |
| AGCTTAAGAGCCCCAACTTT+GGG | 0.338452 | 7.4:-22112561 | MS.gene51896:CDS |
| TGGAACGGTGGAGGAGGAAG+TGG | 0.352169 | 7.4:-22111907 | MS.gene51896:CDS |
| CCAAGGCCTCACCCAAAGTT+GGG | 0.365227 | 7.4:+22112550 | None:intergenic |
| GGACAGCTGGGAGGAACTTT+GGG | 0.369162 | 7.4:-22112516 | MS.gene51896:CDS |
| CCTTGTGAGAAATGTACTTT+TGG | 0.372554 | 7.4:-22111937 | MS.gene51896:CDS |
| TGGACAGCTGGGAGGAACTT+TGG | 0.375248 | 7.4:-22112517 | MS.gene51896:CDS |
| GGAACTTTGGGTGACGCATT+AGG | 0.381525 | 7.4:-22112504 | MS.gene51896:CDS |
| ACATTGTTTGTTGATGGATT+TGG | 0.386236 | 7.4:-22111205 | MS.gene51896:intron |
| CGTATCGTAGATCTGAAAAC+TGG | 0.387189 | 7.4:-22111334 | MS.gene51896:CDS |
| TCTTTCAGTTATTTGCGCTT+TGG | 0.390237 | 7.4:-22112255 | MS.gene51896:intron |
| TACATGAAACGATCAAATTT+GGG | 0.400032 | 7.4:+22109875 | None:intergenic |
| CACATATCCACTTATTTATG+AGG | 0.413364 | 7.4:-22111269 | MS.gene51896:CDS |
| GAGGCCTTGGGAAATGCTAT+TGG | 0.417682 | 7.4:-22112537 | MS.gene51896:CDS |
| CTTGCTCTCTTGAATGTACA+TGG | 0.427223 | 7.4:+22112454 | None:intergenic |
| CCCAAGGCCTCACCCAAAGT+TGG | 0.427524 | 7.4:+22112549 | None:intergenic |
| ATAAGATCCAAGCATGCATA+TGG | 0.431391 | 7.4:+22111238 | None:intergenic |
| TAATCTCTTGCAATGGGTCT+AGG | 0.432068 | 7.4:+22109984 | None:intergenic |
| CCAGCTAAAATGCAAGGATT+AGG | 0.433680 | 7.4:+22112186 | None:intergenic |
| GGGAAATGCTATTGGACAGC+TGG | 0.441127 | 7.4:-22112529 | MS.gene51896:CDS |
| AATAAGTGGATATGTGGCTT+TGG | 0.441902 | 7.4:+22111276 | None:intergenic |
| CATCAACAAACAATGTATAC+TGG | 0.442196 | 7.4:+22111212 | None:intergenic |
| CCAACTTTGGGTGAGGCCTT+GGG | 0.444537 | 7.4:-22112549 | MS.gene51896:CDS |
| TCCTCTCCCTCAGGTACTTG+TGG | 0.454926 | 7.4:+22112420 | None:intergenic |
| CCACGGTAATCTCTTGCAAT+GGG | 0.459035 | 7.4:+22109978 | None:intergenic |
| GGGATATGGAACGGTGGAGG+AGG | 0.473543 | 7.4:-22111913 | MS.gene51896:CDS |
| AATATTACCTCTATGTTCAC+AGG | 0.473842 | 7.4:-22112362 | MS.gene51896:intron |
| GAGCTTAAGAGCCCCAACTT+TGG | 0.483767 | 7.4:-22112562 | MS.gene51896:CDS |
| ATGTATGGATCCTCTCCCTC+AGG | 0.486133 | 7.4:+22112411 | None:intergenic |
| GGTGGGATATGGAACGGTGG+AGG | 0.488863 | 7.4:-22111916 | MS.gene51896:CDS |
| TAATCTTCCATATGCATGCT+TGG | 0.498926 | 7.4:-22111245 | MS.gene51896:CDS |
| CTCATAAATAAGTGGATATG+TGG | 0.500526 | 7.4:+22111270 | None:intergenic |
| GCCACGGTAATCTCTTGCAA+TGG | 0.500788 | 7.4:+22109977 | None:intergenic |
| ACGCATTAGGTGATGTTGGA+GGG | 0.515965 | 7.4:-22112491 | MS.gene51896:CDS |
| GACGCATTAGGTGATGTTGG+AGG | 0.524394 | 7.4:-22112492 | MS.gene51896:CDS |
| GTGGATGCAGCATGGCCTCT+AGG | 0.524509 | 7.4:-22109926 | MS.gene51896:CDS |
| CGCATTAGGTGATGTTGGAG+GGG | 0.533947 | 7.4:-22112490 | MS.gene51896:CDS |
| TCCACAAGTACCTGAGGGAG+AGG | 0.539184 | 7.4:-22112421 | MS.gene51896:CDS |
| AAGAGCCCCAACTTTGGGTG+AGG | 0.542435 | 7.4:-22112556 | MS.gene51896:CDS |
| GTGGATGTGGTTAACATGAT+TGG | 0.556481 | 7.4:-22112784 | None:intergenic |
| GGAAATGCTATTGGACAGCT+GGG | 0.558949 | 7.4:-22112528 | MS.gene51896:CDS |
| GGTGACGCATTAGGTGATGT+TGG | 0.560563 | 7.4:-22112495 | MS.gene51896:CDS |
| AGATTATCCTCATAAATAAG+TGG | 0.574466 | 7.4:+22111262 | None:intergenic |
| AATAAAACCTGTGAACATAG+AGG | 0.575004 | 7.4:+22112355 | None:intergenic |
| AAACGATCAAATTTGGGCAA+TGG | 0.575531 | 7.4:+22109881 | None:intergenic |
| ATATTCAATTTGATTTGCCA+CGG | 0.578091 | 7.4:+22109961 | None:intergenic |
| CAAGGCCTCACCCAAAGTTG+GGG | 0.589355 | 7.4:+22112551 | None:intergenic |
| GGAACGGTGGAGGAGGAAGT+GGG | 0.591214 | 7.4:-22111906 | MS.gene51896:CDS |
| GCATTAGGTGATGTTGGAGG+GGG | 0.604173 | 7.4:-22112489 | MS.gene51896:CDS |
| TGATAGCCAGCTAAAATGCA+AGG | 0.615009 | 7.4:+22112180 | None:intergenic |
| TGAATATCAAGATGCAGTTG+TGG | 0.629356 | 7.4:-22109945 | MS.gene51896:CDS |
| AGTTTGTAAAACAAAATACA+AGG | 0.630812 | 7.4:-22111302 | MS.gene51896:CDS |
| GCTTCTGTTGCATTGCCTAG+AGG | 0.632703 | 7.4:+22109911 | None:intergenic |
| AAGAGCTCCACAAGTACCTG+AGG | 0.640256 | 7.4:-22112427 | MS.gene51896:CDS |
| CTGTCCAATAGCATTTCCCA+AGG | 0.640978 | 7.4:+22112533 | None:intergenic |
| AATCATTATCTTTAGAAACA+GGG | 0.643975 | 7.4:-22112758 | MS.gene51896:intron |
| CCAAAAGTACATTTCTCACA+AGG | 0.649040 | 7.4:+22111937 | None:intergenic |
| AGAGCTCCACAAGTACCTGA+GGG | 0.666757 | 7.4:-22112426 | MS.gene51896:CDS |
| ATGCAGTTGTGGATGCAGCA+TGG | 0.702608 | 7.4:-22109934 | MS.gene51896:CDS |
| AATGCTATTGGACAGCTGGG+AGG | 0.726531 | 7.4:-22112525 | MS.gene51896:CDS |
| TTTGGTGGGATATGGAACGG+TGG | 0.747214 | 7.4:-22111919 | MS.gene51896:CDS |
| CCCATTGCAAGAGATTACCG+TGG | 0.756212 | 7.4:-22109978 | MS.gene51896:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAAAAAAAAATTATGTT+GGG | + | chr7.4:22112154-22112173 | None:intergenic | 10.0% |
| !! | TATGTAAAAAAAAATTATGT+TGG | + | chr7.4:22112155-22112174 | None:intergenic | 10.0% |
| !!! | AACGAAATTATTATTATTTT+TGG | - | chr7.4:22109964-22109983 | MS.gene51896:CDS | 10.0% |
| !!! | TTGTTTTATAATTTGAAAAA+TGG | + | chr7.4:22110868-22110887 | None:intergenic | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr7.4:22111938-22111957 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr7.4:22111937-22111956 | MS.gene51896:CDS | 15.0% |
| !! | AATTTAAAAGACATTAACTT+AGG | + | chr7.4:22112594-22112613 | None:intergenic | 15.0% |
| !! | ATAAAAAAGATTGTACTTAA+AGG | - | chr7.4:22110241-22110260 | MS.gene51896:intron | 15.0% |
| !! | TGAATATAATAGAAATTACA+AGG | - | chr7.4:22112292-22112311 | MS.gene51896:intron | 15.0% |
| !!! | ATCTAAAATCATTATATTCT+AGG | - | chr7.4:22111208-22111227 | MS.gene51896:CDS | 15.0% |
| !!! | ATTGATCCTTTAAATTATTT+TGG | + | chr7.4:22111702-22111721 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr7.4:22111811-22111830 | None:intergenic | 15.0% |
| !!! | TGTTGATAAAATTAATTGTA+GGG | - | chr7.4:22110506-22110525 | MS.gene51896:intron | 15.0% |
| !! | AAATCATATTGTAACAAGTT+AGG | + | chr7.4:22112462-22112481 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | chr7.4:22111971-22111990 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr7.4:22111851-22111870 | None:intergenic | 20.0% |
| !! | AGTTTGTAAAACAAAATACA+AGG | - | chr7.4:22111329-22111348 | MS.gene51896:CDS | 20.0% |
| !! | GTATGACCAAAATAATTTAA+AGG | - | chr7.4:22111693-22111712 | MS.gene51896:intron | 20.0% |
| !!! | AAAAAGTACATTTATCTTTC+TGG | - | chr7.4:22111153-22111172 | MS.gene51896:intron | 20.0% |
| !!! | AAATCATTATCTTTAGAAAC+AGG | - | chr7.4:22109872-22109891 | MS.gene51896:CDS | 20.0% |
| !!! | AAATTGAAAGCGTTTATATT+TGG | + | chr7.4:22111538-22111557 | None:intergenic | 20.0% |
| !!! | AAGATAAATGTACTTTTTCT+AGG | + | chr7.4:22111151-22111170 | None:intergenic | 20.0% |
| !!! | AATCATTATCTTTAGAAACA+GGG | - | chr7.4:22109873-22109892 | MS.gene51896:CDS | 20.0% |
| !!! | AATTGAAAGCGTTTATATTT+GGG | + | chr7.4:22111537-22111556 | None:intergenic | 20.0% |
| !!! | AGTACAATCTTTTTTATGTA+TGG | + | chr7.4:22110238-22110257 | None:intergenic | 20.0% |
| !!! | ATTTTAGGTTAAATTACATC+AGG | + | chr7.4:22111753-22111772 | None:intergenic | 20.0% |
| !!! | CCTAAAAAGAAGAATTTTTA+AGG | + | chr7.4:22112227-22112246 | None:intergenic | 20.0% |
| !!! | CCTTAAAAATTCTTCTTTTT+AGG | - | chr7.4:22112224-22112243 | MS.gene51896:CDS | 20.0% |
| !!! | CTGTTGATAAAATTAATTGT+AGG | - | chr7.4:22110505-22110524 | MS.gene51896:intron | 20.0% |
| !!! | GGTTTTATTCTTAATATTCT+TGG | - | chr7.4:22110290-22110309 | MS.gene51896:intron | 20.0% |
| !!! | TCGTTTTAAAAGTAATACTT+TGG | + | chr7.4:22111914-22111933 | None:intergenic | 20.0% |
| !!! | TTTTTTAACTAGATCTTGAT+CGG | - | chr7.4:22110908-22110927 | MS.gene51896:intron | 20.0% |
| ! | AAACGAACCAATAGTTAATA+AGG | - | chr7.4:22111928-22111947 | MS.gene51896:CDS | 25.0% |
| ! | AATGGCTTATCATCAATTTA+AGG | + | chr7.4:22110546-22110565 | None:intergenic | 25.0% |
| ! | AGATTATCCTCATAAATAAG+TGG | + | chr7.4:22111372-22111391 | None:intergenic | 25.0% |
| ! | ATGAAAGCTAACTTAAAGTT+TGG | - | chr7.4:22112404-22112423 | MS.gene51896:CDS | 25.0% |
| ! | ATGCAAAGTGATAATTCTTT+AGG | - | chr7.4:22110648-22110667 | MS.gene51896:intron | 25.0% |
| ! | ATGTGACCAAAATAACTTAA+AGG | - | chr7.4:22111633-22111652 | MS.gene51896:intron | 25.0% |
| ! | CATATGCTAATTACAAGAAA+TGG | - | chr7.4:22112171-22112190 | MS.gene51896:intron | 25.0% |
| ! | CTTCAAAAAAATTATTGCAG+GGG | - | chr7.4:22112321-22112340 | MS.gene51896:intron | 25.0% |
| ! | GCTTCAAAAAAATTATTGCA+GGG | - | chr7.4:22112320-22112339 | MS.gene51896:intron | 25.0% |
| ! | TACATGAAACGATCAAATTT+GGG | + | chr7.4:22112759-22112778 | None:intergenic | 25.0% |
| ! | TCAAAAATACGAGTATTCTT+AGG | - | chr7.4:22112565-22112584 | MS.gene51896:CDS | 25.0% |
| ! | TGCTTCAAAAAAATTATTGC+AGG | - | chr7.4:22112319-22112338 | MS.gene51896:intron | 25.0% |
| !! | AATGATTTTAGATTTTTGCG+AGG | + | chr7.4:22111201-22111220 | None:intergenic | 25.0% |
| !! | ATTTTATTACGTGCTTACAA+GGG | - | chr7.4:22110774-22110793 | MS.gene51896:intron | 25.0% |
| !! | CAAGTAAAAAGCATATAAGA+AGG | + | chr7.4:22112069-22112088 | None:intergenic | 25.0% |
| !! | TGCCTTTGAAGAATAAAAAA+TGG | + | chr7.4:22110564-22110583 | None:intergenic | 25.0% |
| !!! | AGCCATTTTTTATTCTTCAA+AGG | - | chr7.4:22110559-22110578 | MS.gene51896:intron | 25.0% |
| !!! | ATATTCAATTTGATTTGCCA+CGG | + | chr7.4:22112673-22112692 | None:intergenic | 25.0% |
| !!! | ATTGGTCCTTTAAGTTATTT+TGG | + | chr7.4:22111642-22111661 | None:intergenic | 25.0% |
| !!! | CTTGATTTCTAAAATATGTG+TGG | + | chr7.4:22112131-22112150 | None:intergenic | 25.0% |
| !!! | GAAATTTTGAAAGTCACTAA+TGG | - | chr7.4:22110418-22110437 | MS.gene51896:intron | 25.0% |
| !!! | TATGTTATTTCTACATGTGT+AGG | - | chr7.4:22111236-22111255 | MS.gene51896:CDS | 25.0% |
| !!! | TCATTAAGAGTGTTGAAATT+CGG | + | chr7.4:22112388-22112407 | None:intergenic | 25.0% |
| !!! | TGTGTGGTTATTTATTTTCA+TGG | + | chr7.4:22112115-22112134 | None:intergenic | 25.0% |
| AATAAAACCTGTGAACATAG+AGG | + | chr7.4:22110279-22110298 | None:intergenic | 30.0% | |
| AATATTACCTCTATGTTCAC+AGG | - | chr7.4:22110269-22110288 | MS.gene51896:intron | 30.0% | |
| ACAAGAAATGGTGTATTTGT+TGG | - | chr7.4:22112183-22112202 | MS.gene51896:CDS | 30.0% | |
| ACAATGACTAAGAACTTAGA+AGG | - | chr7.4:22112433-22112452 | MS.gene51896:CDS | 30.0% | |
| ACTTTGCATTCATCAAAGTT+GGG | + | chr7.4:22110637-22110656 | None:intergenic | 30.0% | |
| ATCAGATTTCATACTGTCAA+CGG | + | chr7.4:22110971-22110990 | None:intergenic | 30.0% | |
| ATTTCCAACATTCACGTATT+GGG | - | chr7.4:22110839-22110858 | MS.gene51896:intron | 30.0% | |
| CAACTACTTTATGGTACATA+AGG | + | chr7.4:22109938-22109957 | None:intergenic | 30.0% | |
| CACATATCCACTTATTTATG+AGG | - | chr7.4:22111362-22111381 | MS.gene51896:CDS | 30.0% | |
| CATCAACAAACAATGTATAC+TGG | + | chr7.4:22111422-22111441 | None:intergenic | 30.0% | |
| CTCATAAATAAGTGGATATG+TGG | + | chr7.4:22111364-22111383 | None:intergenic | 30.0% | |
| GTACATGAAACGATCAAATT+TGG | + | chr7.4:22112760-22112779 | None:intergenic | 30.0% | |
| ! | AAAGGCACATATACATATTC+AGG | - | chr7.4:22110577-22110596 | MS.gene51896:intron | 30.0% |
| ! | CAGTATACATTGTTTGTTGA+TGG | - | chr7.4:22111420-22111439 | MS.gene51896:intron | 30.0% |
| ! | CATTTTATTACGTGCTTACA+AGG | - | chr7.4:22110773-22110792 | MS.gene51896:intron | 30.0% |
| ! | GTTTGAAGTTTGTAACAGAT+TGG | + | chr7.4:22111660-22111679 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr7.4:22112020-22112039 | MS.gene51896:intron | 30.0% |
| !! | ACATTGTTTGTTGATGGATT+TGG | - | chr7.4:22111426-22111445 | MS.gene51896:intron | 30.0% |
| !! | TTATTTCTACATGTGTAGGT+TGG | - | chr7.4:22111240-22111259 | MS.gene51896:CDS | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr7.4:22112019-22112038 | None:intergenic | 30.0% |
| AAACGATCAAATTTGGGCAA+TGG | + | chr7.4:22112753-22112772 | None:intergenic | 35.0% | |
| AATAAGTGGATATGTGGCTT+TGG | + | chr7.4:22111358-22111377 | None:intergenic | 35.0% | |
| ATAAGATCCAAGCATGCATA+TGG | + | chr7.4:22111396-22111415 | None:intergenic | 35.0% | |
| CACATATACATATTCAGGAG+AGG | - | chr7.4:22110582-22110601 | MS.gene51896:intron | 35.0% | |
| CACTTTGCATTCATCAAAGT+TGG | + | chr7.4:22110638-22110657 | None:intergenic | 35.0% | |
| CTTTGCATTCATCAAAGTTG+GGG | + | chr7.4:22110636-22110655 | None:intergenic | 35.0% | |
| GATTTCCAACATTCACGTAT+TGG | - | chr7.4:22110838-22110857 | MS.gene51896:intron | 35.0% | |
| GTACCATAAAGTAGTTGCAA+CGG | - | chr7.4:22109941-22109960 | MS.gene51896:CDS | 35.0% | |
| GTTACAAACCTCAAACGTAA+AGG | - | chr7.4:22111724-22111743 | MS.gene51896:intron | 35.0% | |
| TAACCTTGCAACATATGTGT+AGG | - | chr7.4:22110024-22110043 | MS.gene51896:intron | 35.0% | |
| TAATCTTCCATATGCATGCT+TGG | - | chr7.4:22111386-22111405 | MS.gene51896:intron | 35.0% | |
| TACACATATGTTGCAAGGTT+AGG | + | chr7.4:22110025-22110044 | None:intergenic | 35.0% | |
| TCTTTCAGTTATTTGCGCTT+TGG | - | chr7.4:22110376-22110395 | MS.gene51896:intron | 35.0% | |
| TGAATATCAAGATGCAGTTG+TGG | - | chr7.4:22112686-22112705 | MS.gene51896:intron | 35.0% | |
| TGTTAACCTAAACGATGATG+TGG | - | chr7.4:22111566-22111585 | MS.gene51896:intron | 35.0% | |
| TTATGGTACATAAGGCCTAA+GGG | + | chr7.4:22109930-22109949 | None:intergenic | 35.0% | |
| TTTATGGTACATAAGGCCTA+AGG | + | chr7.4:22109931-22109950 | None:intergenic | 35.0% | |
| ! | AATGTACTTTTGGTGGGATA+TGG | - | chr7.4:22110704-22110723 | MS.gene51896:intron | 35.0% |
| ! | ACGATACGAATTTTGGACTT+GGG | + | chr7.4:22111285-22111304 | None:intergenic | 35.0% |
| ! | ATATTCAGGAGAGGAGTATA+AGG | - | chr7.4:22110591-22110610 | MS.gene51896:intron | 35.0% |
| ! | CAGATCTACGATACGAATTT+TGG | + | chr7.4:22111292-22111311 | None:intergenic | 35.0% |
| ! | CCAAAAGTACATTTCTCACA+AGG | + | chr7.4:22110697-22110716 | None:intergenic | 35.0% |
| ! | CCTTGTGAGAAATGTACTTT+TGG | - | chr7.4:22110694-22110713 | MS.gene51896:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr7.4:22111889-22111908 | None:intergenic | 35.0% |
| ! | GTGAGAAATGTACTTTTGGT+GGG | - | chr7.4:22110698-22110717 | MS.gene51896:intron | 35.0% |
| ! | TACGATACGAATTTTGGACT+TGG | + | chr7.4:22111286-22111305 | None:intergenic | 35.0% |
| ! | TGTGAGAAATGTACTTTTGG+TGG | - | chr7.4:22110697-22110716 | MS.gene51896:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7.4:22111885-22111904 | None:intergenic | 35.0% |
| !! | AAACGGAGGGAGTATATTTT+AGG | + | chr7.4:22111768-22111787 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr7.4:22111785-22111804 | None:intergenic | 35.0% |
| !! | TAGGAAAGCACTCTTCAAAT+TGG | + | chr7.4:22110006-22110025 | None:intergenic | 35.0% |
| ATGTTCCAAATGCGTAGTGA+GGG | - | chr7.4:22110943-22110962 | MS.gene51896:intron | 40.0% | |
| CCAGCTAAAATGCAAGGATT+AGG | + | chr7.4:22110448-22110467 | None:intergenic | 40.0% | |
| CGTATCGTAGATCTGAAAAC+TGG | - | chr7.4:22111297-22111316 | MS.gene51896:CDS | 40.0% | |
| CTTGCTCTCTTGAATGTACA+TGG | + | chr7.4:22110180-22110199 | None:intergenic | 40.0% | |
| GCAATCAGAAGTGAAATACG+AGG | - | chr7.4:22112268-22112287 | MS.gene51896:intron | 40.0% | |
| GTTCCGTTGCAACTACTTTA+TGG | + | chr7.4:22109947-22109966 | None:intergenic | 40.0% | |
| TAATCTCTTGCAATGGGTCT+AGG | + | chr7.4:22112650-22112669 | None:intergenic | 40.0% | |
| TATGGTACATAAGGCCTAAG+GGG | + | chr7.4:22109929-22109948 | None:intergenic | 40.0% | |
| TATGTTCCAAATGCGTAGTG+AGG | - | chr7.4:22110942-22110961 | MS.gene51896:intron | 40.0% | |
| TCAGGTTTCCTTTACGTTTG+AGG | + | chr7.4:22111735-22111754 | None:intergenic | 40.0% | |
| TGATAGCCAGCTAAAATGCA+AGG | + | chr7.4:22110454-22110473 | None:intergenic | 40.0% | |
| ! | AAGCATGTATTTGTTGACGC+AGG | - | chr7.4:22112624-22112643 | MS.gene51896:intron | 40.0% |
| ! | ACTTTTGGTGGGATATGGAA+CGG | - | chr7.4:22110709-22110728 | MS.gene51896:intron | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr7.4:22111886-22111905 | None:intergenic | 40.0% |
| !! | CCTAATCCTTGCATTTTAGC+TGG | - | chr7.4:22110445-22110464 | MS.gene51896:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7.4:22112043-22112024 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr7.4:22112024-22112043 | MS.gene51896:intron | 40.0% |
| !!! | TGCATTTTAGCTGGCTATCA+TGG | - | chr7.4:22110454-22110473 | MS.gene51896:intron | 40.0% |
| ACGCATTAGGTGATGTTGGA+GGG | - | chr7.4:22110140-22110159 | MS.gene51896:intron | 45.0% | |
| AGCTTAAGAGCCCCAACTTT+GGG | - | chr7.4:22110070-22110089 | MS.gene51896:intron | 45.0% | |
| ATGGTACATAAGGCCTAAGG+GGG | + | chr7.4:22109928-22109947 | None:intergenic | 45.0% | |
| CCACGGTAATCTCTTGCAAT+GGG | + | chr7.4:22112656-22112675 | None:intergenic | 45.0% | |
| CTAAACGATGATGTGGCAGA+AGG | - | chr7.4:22111573-22111592 | MS.gene51896:intron | 45.0% | |
| CTGTCCAATAGCATTTCCCA+AGG | + | chr7.4:22110101-22110120 | None:intergenic | 45.0% | |
| CTTCTGCCACATCATCGTTT+AGG | + | chr7.4:22111575-22111594 | None:intergenic | 45.0% | |
| GGAAATGCTATTGGACAGCT+GGG | - | chr7.4:22110103-22110122 | MS.gene51896:intron | 45.0% | |
| TCCAACATTCACGTATTGGG+TGG | - | chr7.4:22110842-22110861 | MS.gene51896:intron | 45.0% | |
| TCGCCTACACATATGTTGCA+AGG | + | chr7.4:22110030-22110049 | None:intergenic | 45.0% | |
| !! | ATTTTGGACTTGGGCTTGCT+TGG | + | chr7.4:22111276-22111295 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7.4:22112042-22112023 | None:intergenic | 45.0% |
| AAGAGCTCCACAAGTACCTG+AGG | - | chr7.4:22110204-22110223 | MS.gene51896:intron | 50.0% | |
| AATGCTATTGGACAGCTGGG+AGG | - | chr7.4:22110106-22110125 | MS.gene51896:intron | 50.0% | |
| ACACCGTGAAAAACCCCCTT+AGG | - | chr7.4:22109912-22109931 | MS.gene51896:CDS | 50.0% | |
| AGAGCTCCACAAGTACCTGA+GGG | - | chr7.4:22110205-22110224 | MS.gene51896:intron | 50.0% | |
| ATGCAGTTGTGGATGCAGCA+TGG | - | chr7.4:22112697-22112716 | MS.gene51896:intron | 50.0% | |
| ATGTATGGATCCTCTCCCTC+AGG | + | chr7.4:22110223-22110242 | None:intergenic | 50.0% | |
| CCCATTGCAAGAGATTACCG+TGG | - | chr7.4:22112653-22112672 | MS.gene51896:intron | 50.0% | |
| CGCATTAGGTGATGTTGGAG+GGG | - | chr7.4:22110141-22110160 | MS.gene51896:intron | 50.0% | |
| GACGCATTAGGTGATGTTGG+AGG | - | chr7.4:22110139-22110158 | MS.gene51896:intron | 50.0% | |
| GAGCTTAAGAGCCCCAACTT+TGG | - | chr7.4:22110069-22110088 | MS.gene51896:intron | 50.0% | |
| GAGGCCTTGGGAAATGCTAT+TGG | - | chr7.4:22110094-22110113 | MS.gene51896:intron | 50.0% | |
| GCATTAGGTGATGTTGGAGG+GGG | - | chr7.4:22110142-22110161 | MS.gene51896:intron | 50.0% | |
| GCCACCCAATACGTGAATGT+TGG | + | chr7.4:22110846-22110865 | None:intergenic | 50.0% | |
| GCCACGGTAATCTCTTGCAA+TGG | + | chr7.4:22112657-22112676 | None:intergenic | 50.0% | |
| GCTTCTGTTGCATTGCCTAG+AGG | + | chr7.4:22112723-22112742 | None:intergenic | 50.0% | |
| GGAACTTTGGGTGACGCATT+AGG | - | chr7.4:22110127-22110146 | MS.gene51896:intron | 50.0% | |
| GGGAAATGCTATTGGACAGC+TGG | - | chr7.4:22110102-22110121 | MS.gene51896:intron | 50.0% | |
| GGTGACGCATTAGGTGATGT+TGG | - | chr7.4:22110136-22110155 | MS.gene51896:intron | 50.0% | |
| TTTGGTGGGATATGGAACGG+TGG | - | chr7.4:22110712-22110731 | MS.gene51896:intron | 50.0% | |
| ! | AGGCCTAAGGGGGTTTTTCA+CGG | + | chr7.4:22109918-22109937 | None:intergenic | 50.0% |
| !! | AAGGCATTTTCCCCTGCTTC+TGG | - | chr7.4:22110610-22110629 | MS.gene51896:intron | 50.0% |
| AAAGTTGGGGCCAGAAGCAG+GGG | + | chr7.4:22110623-22110642 | None:intergenic | 55.0% | |
| AAGAGCCCCAACTTTGGGTG+AGG | - | chr7.4:22110075-22110094 | MS.gene51896:intron | 55.0% | |
| CAAAGTTGGGGCCAGAAGCA+GGG | + | chr7.4:22110624-22110643 | None:intergenic | 55.0% | |
| CAAGGCCTCACCCAAAGTTG+GGG | + | chr7.4:22110083-22110102 | None:intergenic | 55.0% | |
| CCAACTTTGGGTGAGGCCTT+GGG | - | chr7.4:22110082-22110101 | MS.gene51896:intron | 55.0% | |
| CCAAGGCCTCACCCAAAGTT+GGG | + | chr7.4:22110084-22110103 | None:intergenic | 55.0% | |
| CGGTTCCCTCACTACGCATT+TGG | + | chr7.4:22110951-22110970 | None:intergenic | 55.0% | |
| GGACAGCTGGGAGGAACTTT+GGG | - | chr7.4:22110115-22110134 | MS.gene51896:intron | 55.0% | |
| TCAAAGTTGGGGCCAGAAGC+AGG | + | chr7.4:22110625-22110644 | None:intergenic | 55.0% | |
| TCCACAAGTACCTGAGGGAG+AGG | - | chr7.4:22110210-22110229 | MS.gene51896:intron | 55.0% | |
| TCCTCTCCCTCAGGTACTTG+TGG | + | chr7.4:22110214-22110233 | None:intergenic | 55.0% | |
| TGGACAGCTGGGAGGAACTT+TGG | - | chr7.4:22110114-22110133 | MS.gene51896:intron | 55.0% | |
| CCCAACTTTGGGTGAGGCCT+TGG | - | chr7.4:22110081-22110100 | MS.gene51896:intron | 60.0% | |
| CCCAAGGCCTCACCCAAAGT+TGG | + | chr7.4:22110085-22110104 | None:intergenic | 60.0% | |
| GGAACGGTGGAGGAGGAAGT+GGG | - | chr7.4:22110725-22110744 | MS.gene51896:intron | 60.0% | |
| GGGATATGGAACGGTGGAGG+AGG | - | chr7.4:22110718-22110737 | MS.gene51896:intron | 60.0% | |
| GGTGGGATATGGAACGGTGG+AGG | - | chr7.4:22110715-22110734 | MS.gene51896:intron | 60.0% | |
| GTGGATGCAGCATGGCCTCT+AGG | - | chr7.4:22112705-22112724 | MS.gene51896:intron | 60.0% | |
| TGGAACGGTGGAGGAGGAAG+TGG | - | chr7.4:22110724-22110743 | MS.gene51896:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 22109862 | 22112791 | 22109862 | ID=MS.gene51896 |
| chr7.4 | mRNA | 22109862 | 22112791 | 22109862 | ID=MS.gene51896.t1;Parent=MS.gene51896 |
| chr7.4 | exon | 22112759 | 22112791 | 22112759 | ID=MS.gene51896.t1.exon1;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22112759 | 22112791 | 22112759 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| chr7.4 | exon | 22112363 | 22112607 | 22112363 | ID=MS.gene51896.t1.exon2;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22112363 | 22112607 | 22112363 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| chr7.4 | exon | 22112178 | 22112269 | 22112178 | ID=MS.gene51896.t1.exon3;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22112178 | 22112269 | 22112178 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| chr7.4 | exon | 22111858 | 22111973 | 22111858 | ID=MS.gene51896.t1.exon4;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22111858 | 22111973 | 22111858 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| chr7.4 | exon | 22111206 | 22111395 | 22111206 | ID=MS.gene51896.t1.exon5;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22111206 | 22111395 | 22111206 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| chr7.4 | exon | 22109862 | 22110007 | 22109862 | ID=MS.gene51896.t1.exon6;Parent=MS.gene51896.t1 |
| chr7.4 | CDS | 22109862 | 22110007 | 22109862 | ID=cds.MS.gene51896.t1;Parent=MS.gene51896.t1 |
| Gene Sequence |
| Protein sequence |
