Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51994.t1 | AES68622.2 | 75.7 | 415 | 72 | 3 | 9 | 423 | 153 | 538 | 9.20E-167 | 596.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51994.t1 | G7IVI4 | 75.7 | 415 | 72 | 3 | 9 | 423 | 153 | 538 | 6.7e-167 | 596.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053581 | MS.gene51994 | 0.807129 | 5.88E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene51994 | 0.818263 | 2.15E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene51994 | 0.804074 | 2.57E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene51994 | 0.802228 | 6.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 78 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCCATATCCACTTTA+TGG | 0.076729 | 3.3:+6124133 | None:intergenic |
| TTTATTCTTGCTGACTCTTT+TGG | 0.220128 | 3.3:+6123916 | None:intergenic |
| ATAAAGAAGTTCAGTGTATT+TGG | 0.231819 | 3.3:-6123718 | MS.gene51994:CDS |
| TTTATTAACTGTTCCTTTGA+TGG | 0.266375 | 3.3:+6123736 | None:intergenic |
| CCTTAAGCCCATTCCACATT+TGG | 0.272294 | 3.3:-6124587 | MS.gene51994:CDS |
| CTTAAGCCCATTCCACATTT+GGG | 0.282277 | 3.3:-6124586 | MS.gene51994:CDS |
| GTGAAGATTATGCTAGTTTC+AGG | 0.284969 | 3.3:+6124165 | None:intergenic |
| TGATGGTAGGTTGAAATTCT+TGG | 0.296686 | 3.3:+6123753 | None:intergenic |
| GATGGTAGGTTGAAATTCTT+GGG | 0.313799 | 3.3:+6123754 | None:intergenic |
| GTGTTGAGTGCACTGATTAT+AGG | 0.329438 | 3.3:-6123345 | MS.gene51994:CDS |
| ACCAAACCATACCTTCCTTT+TGG | 0.336470 | 3.3:+6123597 | None:intergenic |
| GGAGATGACTCACATGTAAA+AGG | 0.337514 | 3.3:+6124087 | None:intergenic |
| CTCAGTTACTCGAGAATCTA+TGG | 0.338466 | 3.3:-6124808 | MS.gene51994:CDS |
| GTTCAGAAATGTAGAACAAA+TGG | 0.356017 | 3.3:+6123786 | None:intergenic |
| ACTCATTTGGTCGATTATAT+CGG | 0.361192 | 3.3:-6124429 | MS.gene51994:CDS |
| GAAGCCAACAGTTCCTGATT+TGG | 0.362711 | 3.3:-6124706 | MS.gene51994:CDS |
| TGAGGTCCATAAAGTGGATA+TGG | 0.363415 | 3.3:-6124139 | MS.gene51994:CDS |
| TCGATACCCAATTTAAAAGT+TGG | 0.371331 | 3.3:-6123832 | MS.gene51994:CDS |
| GGACATAAAGCATGTTTATC+TGG | 0.374770 | 3.3:+6124321 | None:intergenic |
| TTCCGACTTCAAGACTCATT+TGG | 0.383976 | 3.3:-6124442 | MS.gene51994:CDS |
| AGAGAATGTCCTTCCAAATC+AGG | 0.407399 | 3.3:+6124693 | None:intergenic |
| ACAAGAAGCAACATATTGAT+AGG | 0.415947 | 3.3:+6123855 | None:intergenic |
| GGCATTAGCCTCATGATTAT+CGG | 0.420182 | 3.3:+6124041 | None:intergenic |
| TTAAAAGTTGGAGAGCAATC+AGG | 0.420947 | 3.3:-6123820 | MS.gene51994:CDS |
| CCAAATGTGGAATGGGCTTA+AGG | 0.421130 | 3.3:+6124587 | None:intergenic |
| CATATAGTGGTTTCTATGTC+AGG | 0.421269 | 3.3:+6124366 | None:intergenic |
| CCACTGGTAGTTGGAACCTC+TGG | 0.437260 | 3.3:+6124639 | None:intergenic |
| TCTTTCCCCAAATGTGGAAT+GGG | 0.445797 | 3.3:+6124580 | None:intergenic |
| AACTTCGTTGCAGCCTCTCC+TGG | 0.458671 | 3.3:+6123971 | None:intergenic |
| TTAACTGTTCCTTTGATGGT+AGG | 0.461756 | 3.3:+6123740 | None:intergenic |
| CTGCATATCAATATGCCAAA+AGG | 0.476078 | 3.3:-6123612 | MS.gene51994:CDS |
| TTACACTGGCTCAGCTCAGA+TGG | 0.476812 | 3.3:-6123662 | MS.gene51994:CDS |
| TTCTTTCCCCAAATGTGGAA+TGG | 0.482297 | 3.3:+6124579 | None:intergenic |
| AAGTATTCGAAAAGACAATC+TGG | 0.485191 | 3.3:-6124202 | MS.gene51994:CDS |
| GTCGATTATATCGGTGAAAG+AGG | 0.494744 | 3.3:-6124420 | MS.gene51994:CDS |
| TTCTGCGGATCGTTTGTTAG+AGG | 0.495114 | 3.3:-6123887 | MS.gene51994:CDS |
| TCATCTCCTAGTTTAGCGTC+TGG | 0.498990 | 3.3:-6124072 | MS.gene51994:CDS |
| CCTTCCAAATCAGGAACTGT+TGG | 0.502720 | 3.3:+6124702 | None:intergenic |
| ATCTAACTCTTCTGTTTACC+AGG | 0.505522 | 3.3:-6123989 | MS.gene51994:CDS |
| CAATCTTCTTATAGCACCAA+TGG | 0.505651 | 3.3:+6124728 | None:intergenic |
| TTCAGAAATGTAGAACAAAT+GGG | 0.509304 | 3.3:+6123787 | None:intergenic |
| TCAGCTTTACCACTGGTAGT+TGG | 0.510578 | 3.3:+6124630 | None:intergenic |
| CACTGATGAGGTCCATAAAG+TGG | 0.520491 | 3.3:-6124145 | MS.gene51994:CDS |
| TCTGCGGATCGTTTGTTAGA+GGG | 0.522091 | 3.3:-6123886 | MS.gene51994:CDS |
| CCTTGGCTGAACTACAGAAA+AGG | 0.524107 | 3.3:+6123318 | None:intergenic |
| ATGTGGAATGGGCTTAAGGC+AGG | 0.528234 | 3.3:+6124591 | None:intergenic |
| TGGAAGCCAGACGCTAAACT+AGG | 0.529369 | 3.3:+6124066 | None:intergenic |
| ACTCACATGTAAAAGGCTGT+TGG | 0.532787 | 3.3:+6124094 | None:intergenic |
| AGTTTCAGGAACGTGTATGC+AGG | 0.540686 | 3.3:+6124179 | None:intergenic |
| TCTTGAGCTCTGCAAAGTTG+AGG | 0.544614 | 3.3:+6124300 | None:intergenic |
| ATGTGAAAGTAAATCCTCCT+TGG | 0.546000 | 3.3:+6123301 | None:intergenic |
| TAGCCTCATGATTATCGGAA+TGG | 0.546522 | 3.3:+6124046 | None:intergenic |
| GTACTGATGTGTGAGATCCT+AGG | 0.549017 | 3.3:+6124240 | None:intergenic |
| ATGTTCCTCTTTGAGTCAGA+AGG | 0.550763 | 3.3:-6124835 | MS.gene51994:CDS |
| TTAGATTCTTTCCCCAAATG+TGG | 0.557194 | 3.3:+6124574 | None:intergenic |
| GAAAGAATCTAAAATTTGAA+AGG | 0.557568 | 3.3:-6124563 | MS.gene51994:CDS |
| GGCAACCTAGAGAAAAGCCT+TGG | 0.571018 | 3.3:+6124387 | None:intergenic |
| ATCTATGGCGATAGAACCCA+AGG | 0.577922 | 3.3:-6124793 | MS.gene51994:CDS |
| GAATTTCAACCTACCATCAA+AGG | 0.580977 | 3.3:-6123749 | MS.gene51994:CDS |
| ATGAGTCTTGAAGTCGGAAG+CGG | 0.581253 | 3.3:+6124446 | None:intergenic |
| AAAGAGTTCAGCTTTACCAC+TGG | 0.582690 | 3.3:+6124623 | None:intergenic |
| TTAAGCCCATTCCACATTTG+GGG | 0.584028 | 3.3:-6124585 | MS.gene51994:CDS |
| GATAATCATGAGGCTAATGC+CGG | 0.584348 | 3.3:-6124039 | MS.gene51994:CDS |
| ACTCTTCTGTTTACCAGGAG+AGG | 0.585563 | 3.3:-6123984 | MS.gene51994:CDS |
| CCAACAGTTCCTGATTTGGA+AGG | 0.609446 | 3.3:-6124702 | MS.gene51994:CDS |
| GAGTACCTTCTGACTCAAAG+AGG | 0.609582 | 3.3:+6124830 | None:intergenic |
| TCTCAAGAAATACTAGACCT+AGG | 0.626041 | 3.3:-6124257 | MS.gene51994:CDS |
| TAGCATAATCTTCACTGATG+AGG | 0.627648 | 3.3:-6124157 | MS.gene51994:CDS |
| ATGGTAGGTTGAAATTCTTG+GGG | 0.638122 | 3.3:+6123755 | None:intergenic |
| ATCAGGTCATATCTGACCGA+GGG | 0.640083 | 3.3:-6124764 | MS.gene51994:CDS |
| AGGCTGCAACGAAGTTGTGA+TGG | 0.640538 | 3.3:-6123964 | MS.gene51994:CDS |
| GACCAAATGAGTCTTGAAGT+CGG | 0.648590 | 3.3:+6124440 | None:intergenic |
| TTTCTGTAGTTCAGCCAAGG+AGG | 0.649316 | 3.3:-6123315 | MS.gene51994:CDS |
| ATATCAATATGCCAAAAGGA+AGG | 0.651796 | 3.3:-6123608 | MS.gene51994:intron |
| CTTCCATTCCGATAATCATG+AGG | 0.660562 | 3.3:-6124049 | MS.gene51994:CDS |
| CCAGAGGTTCCAACTACCAG+TGG | 0.669521 | 3.3:-6124639 | MS.gene51994:CDS |
| CATCAGGTCATATCTGACCG+AGG | 0.696941 | 3.3:-6124765 | MS.gene51994:CDS |
| AAAGAGGAGACAATGTACCA+AGG | 0.732791 | 3.3:-6124404 | MS.gene51994:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATATATTTTTAAATCT+CGG | + | chr3.3:6123623-6123642 | None:intergenic | 10.0% |
| !! | TTTAAAAATATATTAGAGCA+TGG | - | chr3.3:6123626-6123645 | MS.gene51994:CDS | 15.0% |
| !! | AAAACATAAAGAAACATTGT+AGG | - | chr3.3:6124719-6124738 | MS.gene51994:CDS | 20.0% |
| !! | AAACATAAAGAAACATTGTA+GGG | - | chr3.3:6124720-6124739 | MS.gene51994:CDS | 20.0% |
| !! | ACATGCTTAAAACAATAAAT+TGG | + | chr3.3:6124775-6124794 | None:intergenic | 20.0% |
| !!! | AAGAATAAAATCATTTTCTG+CGG | - | chr3.3:6124249-6124268 | MS.gene51994:CDS | 20.0% |
| !!! | ATATATTTTTAAATCTCGGA+CGG | + | chr3.3:6123619-6123638 | None:intergenic | 20.0% |
| !!! | GAAAGAATCTAAAATTTGAA+AGG | - | chr3.3:6123588-6123607 | MS.gene51994:intron | 20.0% |
| ! | ATAAAGAAGTTCAGTGTATT+TGG | - | chr3.3:6124433-6124452 | MS.gene51994:CDS | 25.0% |
| ! | TTCAGAAATGTAGAACAAAT+GGG | + | chr3.3:6124367-6124386 | None:intergenic | 25.0% |
| ! | TTTATTAACTGTTCCTTTGA+TGG | + | chr3.3:6124418-6124437 | None:intergenic | 25.0% |
| !!! | TAAACTTTTGATTATTCCAG+AGG | - | chr3.3:6123496-6123515 | MS.gene51994:intron | 25.0% |
| AAGTATTCGAAAAGACAATC+TGG | - | chr3.3:6123949-6123968 | MS.gene51994:CDS | 30.0% | |
| ACAAGAAGCAACATATTGAT+AGG | + | chr3.3:6124299-6124318 | None:intergenic | 30.0% | |
| ACTCATTTGGTCGATTATAT+CGG | - | chr3.3:6123722-6123741 | MS.gene51994:CDS | 30.0% | |
| ATATCAATATGCCAAAAGGA+AGG | - | chr3.3:6124543-6124562 | MS.gene51994:CDS | 30.0% | |
| ATCTTTCCATATCCACTTTA+TGG | + | chr3.3:6124021-6124040 | None:intergenic | 30.0% | |
| GTTCAGAAATGTAGAACAAA+TGG | + | chr3.3:6124368-6124387 | None:intergenic | 30.0% | |
| TCGATACCCAATTTAAAAGT+TGG | - | chr3.3:6124319-6124338 | MS.gene51994:CDS | 30.0% | |
| TTTCTTCGTTTGTGTTCAAA+AGG | + | chr3.3:6124607-6124626 | None:intergenic | 30.0% | |
| ! | CTTTATGTTTTCCTGTTTCA+AGG | + | chr3.3:6124710-6124729 | None:intergenic | 30.0% |
| ! | TGCTCTCCAACTTTTAAATT+GGG | + | chr3.3:6124328-6124347 | None:intergenic | 30.0% |
| ! | TTGCTCTCCAACTTTTAAAT+TGG | + | chr3.3:6124329-6124348 | None:intergenic | 30.0% |
| !!! | TTTATTCTTGCTGACTCTTT+TGG | + | chr3.3:6124238-6124257 | None:intergenic | 30.0% |
| AAAGTCCAATTCCTTGAAAC+AGG | - | chr3.3:6124696-6124715 | MS.gene51994:CDS | 35.0% | |
| AATATGCCAAAAGGAAGGTA+TGG | - | chr3.3:6124548-6124567 | MS.gene51994:CDS | 35.0% | |
| ATCTAACTCTTCTGTTTACC+AGG | - | chr3.3:6124162-6124181 | MS.gene51994:CDS | 35.0% | |
| ATGTGAAAGTAAATCCTCCT+TGG | + | chr3.3:6124853-6124872 | None:intergenic | 35.0% | |
| CAATCTTCTTATAGCACCAA+TGG | + | chr3.3:6123426-6123445 | None:intergenic | 35.0% | |
| CATATAGTGGTTTCTATGTC+AGG | + | chr3.3:6123788-6123807 | None:intergenic | 35.0% | |
| CTGCATATCAATATGCCAAA+AGG | - | chr3.3:6124539-6124558 | MS.gene51994:CDS | 35.0% | |
| GAATTTCAACCTACCATCAA+AGG | - | chr3.3:6124402-6124421 | MS.gene51994:CDS | 35.0% | |
| GGACATAAAGCATGTTTATC+TGG | + | chr3.3:6123833-6123852 | None:intergenic | 35.0% | |
| TAGCATAATCTTCACTGATG+AGG | - | chr3.3:6123994-6124013 | MS.gene51994:CDS | 35.0% | |
| TATGCCTCAACAGAAAAAGA+AGG | - | chr3.3:6123804-6123823 | MS.gene51994:CDS | 35.0% | |
| TCTCAAGAAATACTAGACCT+AGG | - | chr3.3:6123894-6123913 | MS.gene51994:CDS | 35.0% | |
| TTAAAAGTTGGAGAGCAATC+AGG | - | chr3.3:6124331-6124350 | MS.gene51994:CDS | 35.0% | |
| TTAGATTCTTTCCCCAAATG+TGG | + | chr3.3:6123580-6123599 | None:intergenic | 35.0% | |
| ! | ACAAGTGTCTTTTGTTACAC+TGG | - | chr3.3:6124475-6124494 | MS.gene51994:CDS | 35.0% |
| ! | ATGACCTGATGTTTTTCCTT+GGG | + | chr3.3:6123377-6123396 | None:intergenic | 35.0% |
| ! | ATGGTAGGTTGAAATTCTTG+GGG | + | chr3.3:6124399-6124418 | None:intergenic | 35.0% |
| ! | GATGGTAGGTTGAAATTCTT+GGG | + | chr3.3:6124400-6124419 | None:intergenic | 35.0% |
| ! | GTGAAGATTATGCTAGTTTC+AGG | + | chr3.3:6123989-6124008 | None:intergenic | 35.0% |
| ! | GTTTTCCTGTTTCAAGGAAT+TGG | + | chr3.3:6124704-6124723 | None:intergenic | 35.0% |
| ! | TATGACCTGATGTTTTTCCT+TGG | + | chr3.3:6123378-6123397 | None:intergenic | 35.0% |
| ! | TGATGGTAGGTTGAAATTCT+TGG | + | chr3.3:6124401-6124420 | None:intergenic | 35.0% |
| ! | TTAACTGTTCCTTTGATGGT+AGG | + | chr3.3:6124414-6124433 | None:intergenic | 35.0% |
| ! | TTTTCTGTTGAGGCATATAG+TGG | + | chr3.3:6123801-6123820 | None:intergenic | 35.0% |
| !! | AGATTTTACTTTTGCTGCAC+CGG | + | chr3.3:6124134-6124153 | None:intergenic | 35.0% |
| AAAGAGGAGACAATGTACCA+AGG | - | chr3.3:6123747-6123766 | MS.gene51994:CDS | 40.0% | |
| AAAGAGTTCAGCTTTACCAC+TGG | + | chr3.3:6123531-6123550 | None:intergenic | 40.0% | |
| ACTCACATGTAAAAGGCTGT+TGG | + | chr3.3:6124060-6124079 | None:intergenic | 40.0% | |
| AGAACCCAAGGAAAAACATC+AGG | - | chr3.3:6123370-6123389 | MS.gene51994:intron | 40.0% | |
| AGAGAATGTCCTTCCAAATC+AGG | + | chr3.3:6123461-6123480 | None:intergenic | 40.0% | |
| ATGTTCCTCTTTGAGTCAGA+AGG | - | chr3.3:6123316-6123335 | MS.gene51994:CDS | 40.0% | |
| CAAAAGGATCTAGCCAAAAC+CGG | + | chr3.3:6124591-6124610 | None:intergenic | 40.0% | |
| CTCAGTTACTCGAGAATCTA+TGG | - | chr3.3:6123343-6123362 | MS.gene51994:CDS | 40.0% | |
| CTTAAGCCCATTCCACATTT+GGG | - | chr3.3:6123565-6123584 | MS.gene51994:intron | 40.0% | |
| CTTCCATTCCGATAATCATG+AGG | - | chr3.3:6124102-6124121 | MS.gene51994:CDS | 40.0% | |
| GACCAAATGAGTCTTGAAGT+CGG | + | chr3.3:6123714-6123733 | None:intergenic | 40.0% | |
| GATAATCATGAGGCTAATGC+CGG | - | chr3.3:6124112-6124131 | MS.gene51994:CDS | 40.0% | |
| GGAGATGACTCACATGTAAA+AGG | + | chr3.3:6124067-6124086 | None:intergenic | 40.0% | |
| GTCGATTATATCGGTGAAAG+AGG | - | chr3.3:6123731-6123750 | MS.gene51994:CDS | 40.0% | |
| TAGCCTCATGATTATCGGAA+TGG | + | chr3.3:6124108-6124127 | None:intergenic | 40.0% | |
| TCTTTCCCCAAATGTGGAAT+GGG | + | chr3.3:6123574-6123593 | None:intergenic | 40.0% | |
| TGAGGTCCATAAAGTGGATA+TGG | - | chr3.3:6124012-6124031 | MS.gene51994:CDS | 40.0% | |
| TTAAGCCCATTCCACATTTG+GGG | - | chr3.3:6123566-6123585 | MS.gene51994:intron | 40.0% | |
| TTCCGACTTCAAGACTCATT+TGG | - | chr3.3:6123709-6123728 | MS.gene51994:CDS | 40.0% | |
| TTCTTTCCCCAAATGTGGAA+TGG | + | chr3.3:6123575-6123594 | None:intergenic | 40.0% | |
| ! | ACCAAACCATACCTTCCTTT+TGG | + | chr3.3:6124557-6124576 | None:intergenic | 40.0% |
| ! | ATGTACCAAGGCTTTTCTCT+AGG | - | chr3.3:6123759-6123778 | MS.gene51994:CDS | 40.0% |
| ! | GGCATTAGCCTCATGATTAT+CGG | + | chr3.3:6124113-6124132 | None:intergenic | 40.0% |
| !! | GTGTTGAGTGCACTGATTAT+AGG | - | chr3.3:6124806-6124825 | MS.gene51994:CDS | 40.0% |
| !!! | GATCCTGTTAGTTTTGCTGA+GGG | + | chr3.3:6124655-6124674 | None:intergenic | 40.0% |
| !!! | TGATCCTGTTAGTTTTGCTG+AGG | + | chr3.3:6124656-6124675 | None:intergenic | 40.0% |
| ACTCTTCTGTTTACCAGGAG+AGG | - | chr3.3:6124167-6124186 | MS.gene51994:CDS | 45.0% | |
| AGTTTCAGGAACGTGTATGC+AGG | + | chr3.3:6123975-6123994 | None:intergenic | 45.0% | |
| ATCAGGTCATATCTGACCGA+GGG | - | chr3.3:6123387-6123406 | MS.gene51994:intron | 45.0% | |
| ATCTATGGCGATAGAACCCA+AGG | - | chr3.3:6123358-6123377 | MS.gene51994:CDS | 45.0% | |
| ATGAGTCTTGAAGTCGGAAG+CGG | + | chr3.3:6123708-6123727 | None:intergenic | 45.0% | |
| CACTGATGAGGTCCATAAAG+TGG | - | chr3.3:6124006-6124025 | MS.gene51994:CDS | 45.0% | |
| CATCCCTCAGCAAAACTAAC+AGG | - | chr3.3:6124649-6124668 | MS.gene51994:CDS | 45.0% | |
| CCTTAAGCCCATTCCACATT+TGG | - | chr3.3:6123564-6123583 | MS.gene51994:intron | 45.0% | |
| CCTTCCAAATCAGGAACTGT+TGG | + | chr3.3:6123452-6123471 | None:intergenic | 45.0% | |
| CCTTGGCTGAACTACAGAAA+AGG | + | chr3.3:6124836-6124855 | None:intergenic | 45.0% | |
| GAAGCCAACAGTTCCTGATT+TGG | - | chr3.3:6123445-6123464 | MS.gene51994:intron | 45.0% | |
| GAGTACCTTCTGACTCAAAG+AGG | + | chr3.3:6123324-6123343 | None:intergenic | 45.0% | |
| GGGCAGAAAAACATGACCAT+TGG | - | chr3.3:6123407-6123426 | MS.gene51994:intron | 45.0% | |
| TCAGCTTTACCACTGGTAGT+TGG | + | chr3.3:6123524-6123543 | None:intergenic | 45.0% | |
| TCATCTCCTAGTTTAGCGTC+TGG | - | chr3.3:6124079-6124098 | MS.gene51994:CDS | 45.0% | |
| TCTTGAGCTCTGCAAAGTTG+AGG | + | chr3.3:6123854-6123873 | None:intergenic | 45.0% | |
| TTTCTGTAGTTCAGCCAAGG+AGG | - | chr3.3:6124836-6124855 | MS.gene51994:CDS | 45.0% | |
| ! | CCAAATGTGGAATGGGCTTA+AGG | + | chr3.3:6123567-6123586 | None:intergenic | 45.0% |
| ! | CCTTTTCTGTAGTTCAGCCA+AGG | - | chr3.3:6124833-6124852 | MS.gene51994:CDS | 45.0% |
| ! | GCCAAAAGGAAGGTATGGTT+TGG | - | chr3.3:6124553-6124572 | MS.gene51994:CDS | 45.0% |
| ! | GTACTGATGTGTGAGATCCT+AGG | + | chr3.3:6123914-6123933 | None:intergenic | 45.0% |
| ! | GTCGCCTTCTTTTTCTGTTG+AGG | + | chr3.3:6123811-6123830 | None:intergenic | 45.0% |
| ! | TCTGCGGATCGTTTGTTAGA+GGG | - | chr3.3:6124265-6124284 | MS.gene51994:CDS | 45.0% |
| ! | TGGTCATGTTTTTCTGCCCT+CGG | + | chr3.3:6123406-6123425 | None:intergenic | 45.0% |
| ! | TTCTGCGGATCGTTTGTTAG+AGG | - | chr3.3:6124264-6124283 | MS.gene51994:CDS | 45.0% |
| !! | AAGGTATGGTTTGGTGATGC+TGG | - | chr3.3:6124562-6124581 | MS.gene51994:CDS | 45.0% |
| !! | CCAACAGTTCCTGATTTGGA+AGG | - | chr3.3:6123449-6123468 | MS.gene51994:intron | 45.0% |
| !!! | GCTGACTCTTTTGGCTTAAG+AGG | + | chr3.3:6124229-6124248 | None:intergenic | 45.0% |
| AGGCTGCAACGAAGTTGTGA+TGG | - | chr3.3:6124187-6124206 | MS.gene51994:CDS | 50.0% | |
| CATCAGGTCATATCTGACCG+AGG | - | chr3.3:6123386-6123405 | MS.gene51994:intron | 50.0% | |
| GGCAACCTAGAGAAAAGCCT+TGG | + | chr3.3:6123767-6123786 | None:intergenic | 50.0% | |
| TGGAAGCCAGACGCTAAACT+AGG | + | chr3.3:6124088-6124107 | None:intergenic | 50.0% | |
| ! | ATGTGGAATGGGCTTAAGGC+AGG | + | chr3.3:6123563-6123582 | None:intergenic | 50.0% |
| ! | GTGATGCTGGTATCCGGTTT+TGG | - | chr3.3:6124575-6124594 | MS.gene51994:CDS | 50.0% |
| !! | GGTTTGGTGATGCTGGTATC+CGG | - | chr3.3:6124569-6124588 | MS.gene51994:CDS | 50.0% |
| !! | TTACACTGGCTCAGCTCAGA+TGG | - | chr3.3:6124489-6124508 | MS.gene51994:CDS | 50.0% |
| AACTTCGTTGCAGCCTCTCC+TGG | + | chr3.3:6124183-6124202 | None:intergenic | 55.0% | |
| CCACTGGTAGTTGGAACCTC+TGG | + | chr3.3:6123515-6123534 | None:intergenic | 55.0% | |
| CCAGAGGTTCCAACTACCAG+TGG | - | chr3.3:6123512-6123531 | MS.gene51994:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 6123294 | 6124879 | 6123294 | ID=MS.gene51994 |
| chr3.3 | mRNA | 6123294 | 6124879 | 6123294 | ID=MS.gene51994.t1;Parent=MS.gene51994 |
| chr3.3 | exon | 6123609 | 6124879 | 6123609 | ID=MS.gene51994.t1.exon1;Parent=MS.gene51994.t1 |
| chr3.3 | CDS | 6123609 | 6124879 | 6123609 | ID=cds.MS.gene51994.t1;Parent=MS.gene51994.t1 |
| chr3.3 | exon | 6123294 | 6123383 | 6123294 | ID=MS.gene51994.t1.exon2;Parent=MS.gene51994.t1 |
| chr3.3 | CDS | 6123294 | 6123383 | 6123294 | ID=cds.MS.gene51994.t1;Parent=MS.gene51994.t1 |
| Gene Sequence |
| Protein sequence |
