Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52443.t1 | RHN77084.1 | 98.4 | 985 | 15 | 1 | 1 | 984 | 1 | 985 | 0.00E+00 | 1343.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52443.t1 | Q9SMY8 | 66.1 | 912 | 281 | 9 | 80 | 979 | 89 | 984 | 2.0e-159 | 564.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52443.t1 | A0A396JIU4 | 98.4 | 985 | 15 | 1 | 1 | 984 | 1 | 985 | 0.0e+00 | 1343.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050465 | MS.gene52443 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene050530 | MS.gene52443 | 0.827448 | 1.56E-54 | -1.69E-46 |
| MS.gene056632 | MS.gene52443 | 0.818741 | 1.67E-52 | -1.69E-46 |
| MS.gene057174 | MS.gene52443 | 0.804327 | 2.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52443.t1 | MTR_1g015450 | 98.073 | 986 | 18 | 1 | 1 | 985 | 1 | 986 | 0.0 | 1957 |
| MS.gene52443.t1 | MTR_1g015480 | 80.075 | 803 | 120 | 4 | 192 | 984 | 11 | 783 | 0.0 | 1236 |
| MS.gene52443.t1 | MTR_7g112570 | 27.021 | 470 | 279 | 15 | 342 | 769 | 142 | 589 | 6.35e-20 | 95.5 |
| MS.gene52443.t1 | MTR_7g112570 | 27.021 | 470 | 279 | 15 | 342 | 769 | 142 | 589 | 6.96e-20 | 95.5 |
| MS.gene52443.t1 | MTR_7g112570 | 27.021 | 470 | 279 | 15 | 342 | 769 | 142 | 589 | 7.64e-20 | 95.5 |
| MS.gene52443.t1 | MTR_4g013255 | 25.616 | 609 | 349 | 22 | 300 | 863 | 93 | 642 | 5.49e-18 | 89.7 |
| MS.gene52443.t1 | MTR_1g012520 | 25.366 | 410 | 242 | 15 | 338 | 698 | 188 | 582 | 2.12e-16 | 84.3 |
| MS.gene52443.t1 | MTR_1g012520 | 26.154 | 455 | 255 | 17 | 376 | 773 | 180 | 610 | 2.57e-13 | 74.3 |
| MS.gene52443.t1 | MTR_2g021030 | 25.048 | 523 | 306 | 18 | 470 | 976 | 132 | 584 | 1.61e-14 | 78.2 |
| MS.gene52443.t1 | MTR_2g021030 | 26.464 | 427 | 256 | 18 | 337 | 721 | 164 | 574 | 2.71e-14 | 77.4 |
| MS.gene52443.t1 | MTR_2g021030 | 26.013 | 469 | 278 | 22 | 397 | 806 | 126 | 584 | 1.17e-12 | 72.4 |
| MS.gene52443.t1 | MTR_3g107280 | 23.820 | 445 | 229 | 15 | 326 | 698 | 174 | 580 | 1.82e-13 | 75.1 |
| MS.gene52443.t1 | MTR_4g114640 | 24.074 | 378 | 228 | 13 | 338 | 671 | 179 | 541 | 1.88e-11 | 68.6 |
| MS.gene52443.t1 | MTR_1g029500 | 24.910 | 277 | 165 | 10 | 168 | 425 | 8 | 260 | 3.71e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52443.t1 | AT4G33210 | 65.385 | 910 | 291 | 8 | 80 | 979 | 89 | 984 | 0.0 | 1122 |
| MS.gene52443.t1 | AT4G15475 | 24.486 | 486 | 284 | 17 | 550 | 976 | 123 | 584 | 1.03e-16 | 85.5 |
| MS.gene52443.t1 | AT4G15475 | 22.710 | 524 | 305 | 20 | 228 | 721 | 121 | 574 | 4.40e-14 | 77.0 |
| MS.gene52443.t1 | AT4G15475 | 23.885 | 381 | 217 | 12 | 273 | 619 | 246 | 587 | 9.60e-12 | 69.3 |
| MS.gene52443.t1 | AT2G25490 | 24.124 | 485 | 288 | 19 | 334 | 771 | 172 | 623 | 2.16e-14 | 78.2 |
| MS.gene52443.t1 | AT2G25490 | 26.392 | 485 | 267 | 18 | 341 | 774 | 151 | 596 | 4.49e-13 | 73.9 |
| MS.gene52443.t1 | AT5G25350 | 25.635 | 394 | 231 | 13 | 338 | 682 | 166 | 546 | 1.55e-12 | 72.0 |
| MS.gene52443.t1 | AT5G25350 | 23.849 | 478 | 282 | 13 | 371 | 816 | 153 | 580 | 1.14e-11 | 69.3 |
| MS.gene52443.t1 | AT5G27920 | 23.950 | 476 | 295 | 12 | 341 | 769 | 97 | 552 | 1.55e-11 | 68.9 |
| MS.gene52443.t1 | AT5G01720 | 24.000 | 425 | 263 | 13 | 363 | 735 | 154 | 570 | 4.02e-11 | 67.4 |
Find 188 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAGGTCTTCTCATTTC+TGG | 0.102063 | 1.4:-6686349 | MS.gene52443:intron |
| ATGCGGAGTATGTTTAATTT+TGG | 0.107392 | 1.4:+6683057 | None:intergenic |
| ATGAAAACCTTCCTAATATT+TGG | 0.132121 | 1.4:+6681509 | None:intergenic |
| GGTCTTCGGTCTCTCAATTT+AGG | 0.148162 | 1.4:-6683087 | MS.gene52443:CDS |
| TGAATCTCTGGTGCTGTTTA+TGG | 0.211607 | 1.4:-6687522 | MS.gene52443:CDS |
| CAGGAGTTGGATTTGTCTTA+TGG | 0.225295 | 1.4:-6681764 | MS.gene52443:CDS |
| TGATTGATGGGTTTGATTCC+TGG | 0.254850 | 1.4:-6687330 | MS.gene52443:CDS |
| AAATCAAGCAGAGCTAAATT+TGG | 0.267048 | 1.4:+6682734 | None:intergenic |
| GCAGATAAGCTCAGCGAGTA+TGG | 0.274859 | 1.4:-6680249 | MS.gene52443:intron |
| CTTGAAGGTACTAAAGTTGC+AGG | 0.289199 | 1.4:-6681852 | MS.gene52443:intron |
| GTCTTCGGTCTCTCAATTTA+GGG | 0.300756 | 1.4:-6683086 | MS.gene52443:CDS |
| CCGCATTGAAGCGATGTTAA+TGG | 0.303108 | 1.4:-6683040 | MS.gene52443:CDS |
| TGAGCTAACATGCCCTTATC+TGG | 0.308157 | 1.4:-6683751 | MS.gene52443:CDS |
| GCGTGGGTTGTCCAAATATT+AGG | 0.308828 | 1.4:-6681520 | MS.gene52443:CDS |
| TGGTGCTTTACCAGCTCTTC+AGG | 0.309631 | 1.4:-6681783 | MS.gene52443:CDS |
| ATGTCAAGAGAGGACAATTA+AGG | 0.315111 | 1.4:+6682974 | None:intergenic |
| GACTTTCCGGACCGGAATTC+GGG | 0.321991 | 1.4:+6687254 | None:intergenic |
| AAATTTCGTGCAGCATGTTC+TGG | 0.324114 | 1.4:-6680224 | MS.gene52443:CDS |
| TCATCAGCAACAGGACTTTC+CGG | 0.325567 | 1.4:+6687241 | None:intergenic |
| ATCTATGCTGGCTTAATCTA+AGG | 0.328261 | 1.4:-6681400 | MS.gene52443:intron |
| AGGACCTTCTATTTATTTGC+TGG | 0.329200 | 1.4:-6685973 | MS.gene52443:CDS |
| TTGAAGACCAAGAGATTGTT+AGG | 0.337302 | 1.4:-6686521 | MS.gene52443:CDS |
| CTTCTGCTTGAACTTGATAT+AGG | 0.345354 | 1.4:-6685504 | MS.gene52443:CDS |
| ATTGACCAATCTATTCCTTC+AGG | 0.349829 | 1.4:-6681257 | MS.gene52443:intron |
| TGATTTATCATACACTTTCC+TGG | 0.349909 | 1.4:-6682717 | MS.gene52443:CDS |
| ATTGGATGGTTGTGATCATT+TGG | 0.352347 | 1.4:-6683718 | MS.gene52443:CDS |
| GATCCACTTCTTGTAAAGAT+TGG | 0.357169 | 1.4:+6684540 | None:intergenic |
| TGAATATGCATGATTTAAAC+TGG | 0.360921 | 1.4:-6681664 | MS.gene52443:CDS |
| CTTACACGTGTGAGTTTAAA+CGG | 0.367445 | 1.4:-6681692 | MS.gene52443:CDS |
| ACAAGAAAGAAGCTCTTCTA+TGG | 0.373730 | 1.4:+6681724 | None:intergenic |
| GCTACAGCATTGAGCATATC+AGG | 0.374719 | 1.4:-6685993 | MS.gene52443:CDS |
| GGACTTTCCGGACCGGAATT+CGG | 0.376593 | 1.4:+6687253 | None:intergenic |
| ATACTGCCCAAACATATCTT+TGG | 0.381624 | 1.4:-6685325 | MS.gene52443:CDS |
| CCATAACAATTATTATTACT+AGG | 0.382154 | 1.4:+6686624 | None:intergenic |
| CTTCAGCAACTGTTCCTCAT+TGG | 0.386483 | 1.4:-6681305 | MS.gene52443:intron |
| AATATTAATGACTCAATTAG+TGG | 0.392177 | 1.4:+6682809 | None:intergenic |
| GCACAACATTGTCCTAATCT+TGG | 0.392387 | 1.4:-6685363 | MS.gene52443:CDS |
| AAATTGGGAAGAGGACAGAT+AGG | 0.393876 | 1.4:-6685836 | MS.gene52443:CDS |
| CACACCTCCAAAGATATGTT+TGG | 0.395143 | 1.4:+6685318 | None:intergenic |
| TCAAATTAGCTGACAGAGAA+AGG | 0.397336 | 1.4:+6681447 | None:intergenic |
| GTCTTAGAATTGTCAACATT+GGG | 0.400988 | 1.4:+6685190 | None:intergenic |
| ATGGACTCTGTTCCCTGCAT+TGG | 0.402487 | 1.4:-6682760 | MS.gene52443:CDS |
| TGACTCTTGTAAACAACTAA+AGG | 0.404503 | 1.4:-6682675 | MS.gene52443:intron |
| CCTAGTAATAATAATTGTTA+TGG | 0.408212 | 1.4:-6686624 | MS.gene52443:CDS |
| AGTTGAGGTTCTGAAGTAAT+CGG | 0.409969 | 1.4:+6681543 | None:intergenic |
| CTAAATTTGGGAGCCAATGC+AGG | 0.411003 | 1.4:+6682747 | None:intergenic |
| GAGCAAAGTGAACTACTCTA+TGG | 0.414803 | 1.4:-6686676 | MS.gene52443:CDS |
| GTCACTCACGCATGAATCTC+TGG | 0.418205 | 1.4:-6687534 | None:intergenic |
| TTCTCTGTCAGCTAATTTGA+AGG | 0.430609 | 1.4:-6681444 | MS.gene52443:CDS |
| AATCAAGCAGAGCTAAATTT+GGG | 0.435350 | 1.4:+6682735 | None:intergenic |
| CTACTTCTCAGGTTGGTCTT+CGG | 0.438635 | 1.4:-6683101 | MS.gene52443:intron |
| TGAAGGCAATCTCTTTGTTA+AGG | 0.438710 | 1.4:-6685947 | MS.gene52443:intron |
| TTATCTGGAGAAGGTCATAT+TGG | 0.439926 | 1.4:-6683736 | MS.gene52443:CDS |
| TGCCCATCGATTGGGTTAGA+TGG | 0.440347 | 1.4:-6682779 | MS.gene52443:CDS |
| TACAGATGATCTATTGCATA+TGG | 0.444678 | 1.4:-6686490 | MS.gene52443:intron |
| GCCACTGTAATCCCGAATTC+CGG | 0.444935 | 1.4:-6687265 | MS.gene52443:CDS |
| TATTTATTTGCTGGTCATGA+AGG | 0.444953 | 1.4:-6685964 | MS.gene52443:CDS |
| CGAGCGCCGTACAGCAGGCC+AGG | 0.450701 | 1.4:+6687312 | None:intergenic |
| ATGCCAATCTTTACAAGAAG+TGG | 0.451112 | 1.4:-6684543 | MS.gene52443:CDS |
| TGGGAACAGTGTGCTGTTGA+TGG | 0.451344 | 1.4:+6681485 | None:intergenic |
| ATGCTCAATGCTGTAGCATT+CGG | 0.453434 | 1.4:+6685999 | None:intergenic |
| GAAGATGAAGAAATTGAAGC+TGG | 0.454897 | 1.4:-6687385 | MS.gene52443:CDS |
| AATATCAACGATTCCACACT+TGG | 0.462162 | 1.4:-6685764 | MS.gene52443:CDS |
| TAATGTCCTGCCCATCGATT+GGG | 0.464085 | 1.4:-6682787 | MS.gene52443:CDS |
| ACGTTTGCAGAATATTAGAT+TGG | 0.465159 | 1.4:-6684961 | MS.gene52443:CDS |
| ACACCTCCAAAGATATGTTT+GGG | 0.467816 | 1.4:+6685319 | None:intergenic |
| GCATCAAGAAAACCAAGATT+AGG | 0.470512 | 1.4:+6685351 | None:intergenic |
| TGAGTGTAACTTTGATGATC+TGG | 0.470837 | 1.4:-6686706 | MS.gene52443:CDS |
| TGATGTTCGCTTCTGTCCTA+AGG | 0.472083 | 1.4:-6680392 | MS.gene52443:intron |
| GTCGCTTGAACCTCTTTACA+AGG | 0.475184 | 1.4:-6681807 | MS.gene52443:CDS |
| GGGCATCACTTCTGCGTCAA+TGG | 0.475389 | 1.4:-6685154 | MS.gene52443:CDS |
| TTGTCCTCTCTTGACATCAC+TGG | 0.475453 | 1.4:-6682968 | MS.gene52443:CDS |
| ATGACCAGCAAATAAATAGA+AGG | 0.477031 | 1.4:+6685969 | None:intergenic |
| ATATGACCTTCTCCAGATAA+GGG | 0.480400 | 1.4:+6683739 | None:intergenic |
| TCTATTGACTTCGGTGTCGT+TGG | 0.480572 | 1.4:-6684991 | MS.gene52443:CDS |
| TTTACCAGCTCTTCAGGAGT+TGG | 0.481593 | 1.4:-6681777 | MS.gene52443:CDS |
| TCACGGTTCTCATCAGCAAC+AGG | 0.481783 | 1.4:+6687232 | None:intergenic |
| AATATGACCTTCTCCAGATA+AGG | 0.484456 | 1.4:+6683738 | None:intergenic |
| CTCAATTAGTGGACAGGCAC+GGG | 0.485784 | 1.4:+6682820 | None:intergenic |
| CCAGAGTTTGTAAGCAGTGG+CGG | 0.486315 | 1.4:-6686302 | MS.gene52443:CDS |
| GCTGCACGAATAGCAGCATC+AGG | 0.490307 | 1.4:+6685465 | None:intergenic |
| AATTGGGAAGAGGACAGATA+GGG | 0.490809 | 1.4:-6685835 | MS.gene52443:CDS |
| AATTGAAGCTGGGAATTATG+AGG | 0.491329 | 1.4:-6687374 | MS.gene52443:CDS |
| ATCTAACCCAATCGATGGGC+AGG | 0.494620 | 1.4:+6682781 | None:intergenic |
| TCTCTCAACATATTACAATC+AGG | 0.496231 | 1.4:+6685791 | None:intergenic |
| AATAACCTGAAGGAATAGAT+TGG | 0.496884 | 1.4:+6681252 | None:intergenic |
| CGTTTAAACTCACACGTGTA+AGG | 0.497322 | 1.4:+6681693 | None:intergenic |
| TGTCAAGAGAGGACAATTAA+GGG | 0.498049 | 1.4:+6682975 | None:intergenic |
| CCGATCGAGCGCCGTACAGC+AGG | 0.498303 | 1.4:+6687307 | None:intergenic |
| TGTAGAGCTTGACTTCAGTT+CGG | 0.499255 | 1.4:-6683833 | MS.gene52443:intron |
| TTAGTCAGTCTCTCCCTTGG+TGG | 0.499323 | 1.4:-6683795 | MS.gene52443:CDS |
| ATGCCCTCAACTAGTGAAGC+TGG | 0.504093 | 1.4:-6685433 | MS.gene52443:CDS |
| TAGCTTGTCTCAATCTATGC+TGG | 0.504946 | 1.4:-6681412 | MS.gene52443:CDS |
| CGTAGGAAGTTGCAATGGAT+AGG | 0.505696 | 1.4:+6681597 | None:intergenic |
| CCTGCTGTACGGCGCTCGAT+CGG | 0.507201 | 1.4:-6687307 | MS.gene52443:CDS |
| TTAATGTCCTGCCCATCGAT+TGG | 0.507879 | 1.4:-6682788 | MS.gene52443:CDS |
| AGTCTTAGAATTGTCAACAT+TGG | 0.509202 | 1.4:+6685189 | None:intergenic |
| AGCTCACAGTTCTATGTTGG+AGG | 0.512932 | 1.4:-6685124 | MS.gene52443:intron |
| GAAATTAGCACTGCAAAAGC+AGG | 0.514012 | 1.4:-6684591 | MS.gene52443:CDS |
| GATCCATCCTAACAATCTCT+TGG | 0.514812 | 1.4:+6686514 | None:intergenic |
| TCGTCGTCGTTGTTCATACC+AGG | 0.516178 | 1.4:+6687436 | None:intergenic |
| AAATCCAACTCCTGAAGAGC+TGG | 0.522527 | 1.4:+6681773 | None:intergenic |
| AGACCAAGAGATTGTTAGGA+TGG | 0.522538 | 1.4:-6686517 | MS.gene52443:CDS |
| ATGTCCAGCTTCACTAGTTG+AGG | 0.524268 | 1.4:+6685429 | None:intergenic |
| TGCGTTGGTGTGTGGTGGTG+AGG | 0.525110 | 1.4:-6686595 | MS.gene52443:CDS |
| CACGCTTATGAGACGAATCA+CGG | 0.527076 | 1.4:+6687215 | None:intergenic |
| GATAAAGCATCACCTGCAAA+AGG | 0.527185 | 1.4:+6682939 | None:intergenic |
| CTGCCCAAACATATCTTTGG+AGG | 0.527460 | 1.4:-6685322 | MS.gene52443:intron |
| TTGGTGTGTGGTGGTGAGGA+TGG | 0.527558 | 1.4:-6686591 | MS.gene52443:CDS |
| AATGATGTGGAAGACGGTGG+AGG | 0.528685 | 1.4:-6686567 | MS.gene52443:CDS |
| TTGATTCCTGGCCTGCTGTA+CGG | 0.530063 | 1.4:-6687318 | MS.gene52443:CDS |
| GTTGAGGTTCTGAAGTAATC+GGG | 0.533869 | 1.4:+6681544 | None:intergenic |
| ATGCTTATGCCAGGTAACTC+AGG | 0.533873 | 1.4:+6681620 | None:intergenic |
| CTGGAGAAGGTCATATTGGA+TGG | 0.534634 | 1.4:-6683732 | MS.gene52443:CDS |
| CCGCCACTGCTTACAAACTC+TGG | 0.535912 | 1.4:+6686302 | None:intergenic |
| GGGAAGTTTCCTGAGTTACC+TGG | 0.537422 | 1.4:-6681629 | MS.gene52443:CDS |
| CAAGATGACACAGTCTCTCA+TGG | 0.541185 | 1.4:+6685714 | None:intergenic |
| AAGATGAAGAAATTGAAGCT+GGG | 0.541996 | 1.4:-6687384 | MS.gene52443:CDS |
| TTGAATACTGTTGCCAAGTG+TGG | 0.547986 | 1.4:+6685751 | None:intergenic |
| ATTGGGAAGAGGACAGATAG+GGG | 0.548525 | 1.4:-6685834 | MS.gene52443:CDS |
| TAATGACTCAATTAGTGGAC+AGG | 0.549074 | 1.4:+6682814 | None:intergenic |
| TATATCAAAATGTACTATGT+TGG | 0.549378 | 1.4:-6680422 | MS.gene52443:CDS |
| GTGTCATGCGAATACAAGTC+AGG | 0.549671 | 1.4:-6685676 | MS.gene52443:intron |
| AGGAATAGATTGGTCAATCT+CGG | 0.550623 | 1.4:+6681262 | None:intergenic |
| TGTAATCCCGAATTCCGGTC+CGG | 0.553122 | 1.4:-6687260 | MS.gene52443:CDS |
| CAGAGTTTGTAAGCAGTGGC+GGG | 0.554404 | 1.4:-6686301 | MS.gene52443:CDS |
| CAGATAAGCTCAGCGAGTAT+GGG | 0.555131 | 1.4:-6680248 | MS.gene52443:CDS |
| CTGCCAGAGTTTGTAAGCAG+TGG | 0.556788 | 1.4:-6686305 | MS.gene52443:CDS |
| CAATTGCAGTCTATTGACTT+CGG | 0.557565 | 1.4:-6685000 | MS.gene52443:CDS |
| ATGGTCTCACTTGAGTTGAA+AGG | 0.559000 | 1.4:-6683021 | MS.gene52443:CDS |
| TCGTTAGTCAGTCTCTCCCT+TGG | 0.560848 | 1.4:-6683798 | MS.gene52443:CDS |
| AACTGCTCGGCAACCACCAA+GGG | 0.561608 | 1.4:+6683782 | None:intergenic |
| TGTCCAGCTTCACTAGTTGA+GGG | 0.565601 | 1.4:+6685430 | None:intergenic |
| GTTACTGCGCTTCAATGACA+TGG | 0.565980 | 1.4:+6685554 | None:intergenic |
| ACAAGCAGTCATCAGTGAGT+TGG | 0.567428 | 1.4:+6682852 | None:intergenic |
| ATGATGTGGAAGACGGTGGA+GGG | 0.570065 | 1.4:-6686566 | MS.gene52443:CDS |
| GTCATTGAAGCGCAGTAACA+TGG | 0.570348 | 1.4:-6685550 | MS.gene52443:CDS |
| GGTAATGATGTGGAAGACGG+TGG | 0.571021 | 1.4:-6686570 | MS.gene52443:CDS |
| AGTCCATCTAACCCAATCGA+TGG | 0.572678 | 1.4:+6682776 | None:intergenic |
| TCACTTGAGTTGAAAGGATG+TGG | 0.574179 | 1.4:-6683015 | MS.gene52443:CDS |
| TTGGACAACCCACGCAGTTG+AGG | 0.574282 | 1.4:+6681528 | None:intergenic |
| AAAGCACCACCCTTGTAAAG+AGG | 0.574646 | 1.4:+6681797 | None:intergenic |
| AGGTGTCAACTTGTTGAACC+TGG | 0.576954 | 1.4:-6687454 | MS.gene52443:CDS |
| ATATCAAGTTCAAGCAGAAG+AGG | 0.577593 | 1.4:+6685507 | None:intergenic |
| AAGCTGTAATTCACGACGAA+AGG | 0.578285 | 1.4:-6687474 | MS.gene52443:CDS |
| AATAGCTCACAGTTCTATGT+TGG | 0.580737 | 1.4:-6685127 | MS.gene52443:CDS |
| AACATGCCCTTATCTGGAGA+AGG | 0.580884 | 1.4:-6683745 | MS.gene52443:CDS |
| TTGAAGTGATATTGATCCGG+TGG | 0.584608 | 1.4:+6684710 | None:intergenic |
| CTAAGACTTCATAGCTGTGA+GGG | 0.585297 | 1.4:-6685174 | MS.gene52443:CDS |
| ATGGATAGGATGCTTATGCC+AGG | 0.587259 | 1.4:+6681611 | None:intergenic |
| AATTTGAAGTGATATTGATC+CGG | 0.587951 | 1.4:+6684707 | None:intergenic |
| TCTGTCAGCTAATTTGAAGG+AGG | 0.588127 | 1.4:-6681441 | MS.gene52443:CDS |
| AAACAGGCTGCAGAGTCACC+AGG | 0.590036 | 1.4:+6682699 | None:intergenic |
| CTTGAACCTCTTTACAAGGG+TGG | 0.591774 | 1.4:-6681803 | MS.gene52443:CDS |
| CTAACTGCTCTGTACTCCAC+CGG | 0.592910 | 1.4:-6684726 | MS.gene52443:CDS |
| GGGTTGTCCAAATATTAGGA+AGG | 0.595090 | 1.4:-6681516 | MS.gene52443:CDS |
| CTTCAGAACCTCAACTGCGT+GGG | 0.595625 | 1.4:-6681536 | MS.gene52443:CDS |
| GTCCATCTAACCCAATCGAT+GGG | 0.595753 | 1.4:+6682777 | None:intergenic |
| AGGTTCTGAAGTAATCGGGT+GGG | 0.597859 | 1.4:+6681548 | None:intergenic |
| AGCAACAGGACTTTCCGGAC+CGG | 0.600596 | 1.4:+6687246 | None:intergenic |
| ACTCAATTAGTGGACAGGCA+CGG | 0.604442 | 1.4:+6682819 | None:intergenic |
| TGGGTTGCTCATTTGACACA+TGG | 0.607349 | 1.4:+6681567 | None:intergenic |
| TATCAAGTTCAAGCAGAAGA+GGG | 0.608116 | 1.4:+6685508 | None:intergenic |
| GCTCAAGAGTAGTAACTGCT+CGG | 0.614721 | 1.4:+6683769 | None:intergenic |
| CTTGAGTTGAAAGGATGTGG+TGG | 0.616766 | 1.4:-6683012 | MS.gene52443:CDS |
| GAGGTTCTGAAGTAATCGGG+TGG | 0.620687 | 1.4:+6681547 | None:intergenic |
| TGGTGAGGATGGTAATGATG+TGG | 0.622988 | 1.4:-6686580 | MS.gene52443:CDS |
| GATGGTAATGATGTGGAAGA+CGG | 0.631591 | 1.4:-6686573 | MS.gene52443:CDS |
| ACTTCAGAACCTCAACTGCG+TGG | 0.633478 | 1.4:-6681537 | MS.gene52443:CDS |
| GGCGTGCAATATTGACGAGG+AGG | 0.640334 | 1.4:-6680458 | MS.gene52443:CDS |
| GAATATGCATGATTTAAACT+GGG | 0.641737 | 1.4:-6681663 | MS.gene52443:CDS |
| TAACTGCTCGGCAACCACCA+AGG | 0.642627 | 1.4:+6683781 | None:intergenic |
| TAAATTTGGGAGCCAATGCA+GGG | 0.642950 | 1.4:+6682748 | None:intergenic |
| AGAACTAGTGATTTCAACAT+GGG | 0.643077 | 1.4:+6684455 | None:intergenic |
| AATCTAATATTCTGCAAACG+TGG | 0.648461 | 1.4:+6684963 | None:intergenic |
| TCGCTTGAACCTCTTTACAA+GGG | 0.652251 | 1.4:-6681806 | MS.gene52443:CDS |
| TAGCTTCAAAACTTCCAATG+AGG | 0.654384 | 1.4:+6681291 | None:intergenic |
| ACTAGTTCTTGATAATTGCG+AGG | 0.661698 | 1.4:-6684441 | MS.gene52443:intron |
| GCATCCAGTGATGTCAAGAG+AGG | 0.670741 | 1.4:+6682964 | None:intergenic |
| TTACAGTCGAGGACATGTGT+AGG | 0.670828 | 1.4:-6686028 | MS.gene52443:intron |
| AAGAACTAGTGATTTCAACA+TGG | 0.675696 | 1.4:+6684454 | None:intergenic |
| TCTAAGACTTCATAGCTGTG+AGG | 0.677515 | 1.4:-6685175 | MS.gene52443:CDS |
| ACCGGAATTCGGGATTACAG+TGG | 0.688126 | 1.4:+6687264 | None:intergenic |
| TTAGGCGTGCAATATTGACG+AGG | 0.699170 | 1.4:-6680461 | MS.gene52443:intron |
| AATATGCATGATTTAAACTG+GGG | 0.702634 | 1.4:-6681662 | MS.gene52443:CDS |
| ATATGCATGATTTAAACTGG+GGG | 0.730286 | 1.4:-6681661 | MS.gene52443:CDS |
| CCATTAACATCGCTTCAATG+CGG | 0.731007 | 1.4:+6683040 | None:intergenic |
| AAGGGAGAGACTGACTAACG+AGG | 0.754568 | 1.4:+6683800 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6680181 | 6687545 | 6680181 | ID=MS.gene52443 |
| chr1.4 | mRNA | 6680181 | 6687545 | 6680181 | ID=MS.gene52443.t1;Parent=MS.gene52443 |
| chr1.4 | exon | 6687202 | 6687545 | 6687202 | ID=MS.gene52443.t1.exon1;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6687202 | 6687545 | 6687202 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6686491 | 6686728 | 6686491 | ID=MS.gene52443.t1.exon2;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6686491 | 6686728 | 6686491 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6686232 | 6686364 | 6686232 | ID=MS.gene52443.t1.exon3;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6686232 | 6686364 | 6686232 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6685948 | 6686044 | 6685948 | ID=MS.gene52443.t1.exon4;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6685948 | 6686044 | 6685948 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6685677 | 6685874 | 6685677 | ID=MS.gene52443.t1.exon5;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6685677 | 6685874 | 6685677 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6685323 | 6685593 | 6685323 | ID=MS.gene52443.t1.exon6;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6685323 | 6685593 | 6685323 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6685125 | 6685223 | 6685125 | ID=MS.gene52443.t1.exon7;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6685125 | 6685223 | 6685125 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6684948 | 6685036 | 6684948 | ID=MS.gene52443.t1.exon8;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6684948 | 6685036 | 6684948 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6684699 | 6684798 | 6684699 | ID=MS.gene52443.t1.exon9;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6684699 | 6684798 | 6684699 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6684442 | 6684612 | 6684442 | ID=MS.gene52443.t1.exon10;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6684442 | 6684612 | 6684442 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6683698 | 6683850 | 6683698 | ID=MS.gene52443.t1.exon11;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6683698 | 6683850 | 6683698 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6682952 | 6683112 | 6682952 | ID=MS.gene52443.t1.exon12;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6682952 | 6683112 | 6682952 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6682676 | 6682874 | 6682676 | ID=MS.gene52443.t1.exon13;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6682676 | 6682874 | 6682676 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6681401 | 6681867 | 6681401 | ID=MS.gene52443.t1.exon14;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6681401 | 6681867 | 6681401 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6681258 | 6681321 | 6681258 | ID=MS.gene52443.t1.exon15;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6681258 | 6681321 | 6681258 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6680393 | 6680479 | 6680393 | ID=MS.gene52443.t1.exon16;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6680393 | 6680479 | 6680393 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| chr1.4 | exon | 6680181 | 6680267 | 6680181 | ID=MS.gene52443.t1.exon17;Parent=MS.gene52443.t1 |
| chr1.4 | CDS | 6680181 | 6680267 | 6680181 | ID=cds.MS.gene52443.t1;Parent=MS.gene52443.t1 |
| Gene Sequence |
| Protein sequence |
