AlfalfaGEDB | MS.gene057174

M. sativa cultivar XinJiangDaYe / MS.gene057174

KEGG: -
GO: GO:0000145 GO:0005575 GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0032991 GO:0046903 GO:0051179 GO:0051234 GO:0099023 GO:0140352
PFAM: PF03081.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057174.t1	XP_003608835.1	97.4	655	14	1	25	676	39	693	0.00E+00	1234.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057174.t1	Q9LZD3	34.1	648	374	13	32	663	20	630	3.6e-99	364.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057174.t1	G7JLE3	97.4	655	14	1	25	676	39	693	0.0e+00	1234.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene057174	0.810308	1.23E-50	-1.69E-46
MS.gene050379	MS.gene057174	0.815973	7.02E-52	-1.69E-46
MS.gene050414	MS.gene057174	0.80129	9.65E-49	-1.69E-46
MS.gene050646	MS.gene057174	0.848536	5.76E-60	-1.69E-46
MS.gene050945	MS.gene057174	0.8132	2.89E-51	-1.69E-46
MS.gene051209	MS.gene057174	0.828176	1.04E-54	-1.69E-46
MS.gene051959	MS.gene057174	0.812365	4.40E-51	-1.69E-46
MS.gene051960	MS.gene057174	0.824723	6.92E-54	-1.69E-46
MS.gene053486	MS.gene057174	0.813953	1.97E-51	-1.69E-46
MS.gene054892	MS.gene057174	0.843831	1.10E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057174.t1	MTR_4g103540	97.791	679	12	1	1	676	15	693	0.0	1360
MS.gene057174.t1	MTR_8g021330	40.510	627	322	15	81	675	9	616	2.76e-140	424
MS.gene057174.t1	MTR_7g013770	44.404	545	270	11	145	673	150	677	2.16e-139	423
MS.gene057174.t1	MTR_5g073450	33.937	663	391	11	17	664	4	634	4.90e-121	375
MS.gene057174.t1	MTR_1g090620	32.638	671	393	11	17	663	6	641	5.97e-120	372
MS.gene057174.t1	MTR_3g025900	38.556	568	314	12	115	674	79	619	1.34e-119	370
MS.gene057174.t1	MTR_1g057560	34.472	644	372	12	32	663	20	625	1.82e-117	365
MS.gene057174.t1	MTR_3g031130	34.545	660	377	15	17	664	4	620	9.83e-114	355
MS.gene057174.t1	MTR_6g033310	36.000	550	315	10	138	675	213	737	7.03e-106	338
MS.gene057174.t1	MTR_7g026630	36.531	542	306	13	143	670	137	654	7.53e-105	333

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057174.t1	AT5G50380	58.065	682	238	11	20	675	24	683	0.0	736
MS.gene057174.t1	AT1G72470	40.510	627	324	12	81	675	23	632	1.01e-147	443
MS.gene057174.t1	AT3G14090	39.903	619	349	11	75	674	9	623	8.93e-140	422
MS.gene057174.t1	AT1G54090	45.275	455	233	8	231	673	170	620	7.44e-131	400
MS.gene057174.t1	AT3G29400	38.487	595	300	10	114	674	96	658	5.30e-120	373
MS.gene057174.t1	AT5G52340	33.488	645	377	13	31	663	19	623	1.40e-116	363
MS.gene057174.t1	AT5G58430	34.071	678	353	15	18	664	5	619	1.67e-115	360
MS.gene057174.t1	AT5G03540	33.538	650	375	12	32	663	20	630	2.39e-114	357
MS.gene057174.t1	AT5G03540	32.936	671	377	15	32	663	20	656	8.30e-110	346
MS.gene057174.t1	AT5G13150	36.891	534	308	10	146	668	134	649	1.24e-107	340

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Find 186 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCTGCTGCAATGCA+TGG	0.571711	8.1:+20762568	None:intergenic
AAAATCCTAAACAGCTTCTC+CGG	0.501012	8.1:+20763005	None:intergenic
AAATAAGTCTCTAGATCCTC+TGG	0.475305	8.1:+20762138	None:intergenic
AAATAGACTTCAGGATCATT+CGG	0.468898	8.1:+20763761	None:intergenic
AACAATATCTGTCGTCCTAG+AGG	0.484161	8.1:+20762645	None:intergenic
AAGAGGTGCAGAAGTTTGAG+TGG	0.490479	8.1:-20763232	MS.gene057174:CDS
AAGCAGTTGCCATTTGTAAG+AGG	0.461420	8.1:-20763031	MS.gene057174:CDS
AAGCTGTTAAGGTCGTTGTT+AGG	0.336199	8.1:-20763175	MS.gene057174:CDS
AAGGGTGTGCTTAGAGGACT+TGG	0.391145	8.1:-20762903	MS.gene057174:CDS
AAGGTCTTCGTCGTCGTCGT+CGG	0.517623	8.1:+20763874	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGACTTCAGGATCATT+CGG	+	chr8.1:20762404-20762423	None:intergenic	30.0%
ACGATCCAATATAATCTTAC+CGG	+	chr8.1:20762501-20762520	None:intergenic	30.0%
ATATTATTGATCGGATGGTT+AGG	-	chr8.1:20762807-20762826	MS.gene057174:CDS	30.0%
GAAAGATATTATTGATCGGA+TGG	-	chr8.1:20762802-20762821	MS.gene057174:CDS	30.0%
GCGAATAAATATATCAGAGA+AGG	-	chr8.1:20763918-20763937	MS.gene057174:CDS	30.0%
TGTTTCAATGAAACAGCTAA+AGG	-	chr8.1:20763079-20763098	MS.gene057174:CDS	30.0%
AAAATCCTAAACAGCTTCTC+CGG	+	chr8.1:20763160-20763179	None:intergenic	35.0%
AAATAAGTCTCTAGATCCTC+TGG	+	chr8.1:20764027-20764046	None:intergenic	35.0%
AGAATTATCATCAAACCCAC+CGG	+	chr8.1:20762669-20762688	None:intergenic	35.0%
AGGTAATTCATCACATAACG+AGG	+	chr8.1:20763379-20763398	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	20762077	20764107	20762077	ID=MS.gene057174
chr8.1	mRNA	20762077	20764107	20762077	ID=MS.gene057174.t1;Parent=MS.gene057174
chr8.1	exon	20762077	20764107	20762077	ID=MS.gene057174.t1.exon1;Parent=MS.gene057174.t1
chr8.1	CDS	20762077	20764107	20762077	ID=cds.MS.gene057174.t1;Parent=MS.gene057174.t1

Gene Sequence

>MS.gene057174

ATGGCCGCCACCACCACCAACCACGGCGGCGGCGGAGCCACCGGTGCCGGTGGAGACGATCGAGTTCTCGCTACAGCACAACAGATCCTCAAAAGCCTAAAAGCTCCCAAAGAAGATCGTGAAGACATGCTCTTAATCTTCTCCACCTTCGACAACCGTCTCTCCGGTATCACCGACCTTATCAACGGCGACGATTCCAAATCTTCCAAATCCGACGACGACGACGAAGACCTTGACCGATTCGAAGCTGCGGAGAAAGTCATACTCAATGATTCTTCGTTATCCACCGAGTCTTCTCGTCAATCAACTTCGCTTTTCGATCCTCCGAATGATCCTGAAGTCTATTTCAACGCTGTTGATGAGATTATTCAGTGGATGGAACACTTCACGATCTCGCCGCCGATTAATTCCGCTGGAAAAACCGGTAAGATTATATTGGATCGTGCTGATAACGCGATCCAAGTTGCCATGTCGAGGCTCGAGGATGAGCTTCGACATGTGTTGATTTGTAATACTGTTCCGCCGGATGCTGTTAGCCGGTGTAGTACTAATAGGAGGAGTTCGATGTCTTTCAGTTCGCAGGACGGTGCCGGTGGGTTTGATGATAATTCTGGGAGTTTTGGTGATGTGGGTGATCCTGGTTCTCATAGGTTTCATGAACGTGGTGTTAGTCTTGGTGATGATTTGTTTGTTGATTTGGTTCGTCCTGAATCAATTTTGAATTTGAAAGATATTATTGATCGGATGGTTAGGTCTGGATATGAGAGGGAGTGTTTGCAGGTTTATAGTAGCGTTCGTCGTGACGCGTTGGTTGAGTGTTTGGCAATTCTGGGAGTTGAGAAATTGAGTATTGAAGAGGTGCAGAAGTTTGAGTGGAAGAGTTTGGATGAGAGGATGAAGAATTGGGTGCAAGCTGTTAAGGTCGTTGTTAGGGTTTTGTTGAGTGGGGAGAAGAGGCTATGTGATAGTCTTTTCGGTGATCTGGAGGATGTGAAGGAGATGTGTTTCAATGAAACAGCTAAAGGTTGTGTTATGATGTTGTTGAATTTTGGCGAAGCAGTTGCCATTTGTAAGAGGTCGCCGGAGAAGCTGTTTAGGATTTTGGATATGTATGAGGTTCTGAGAGATGCTTTGCCTGAATTGGAGGATATGGTTACGGATGAGTTTGTGATTACTGAGGCGAAGGGTGTGCTTAGAGGACTTGGGGAGGCTGTGAAAGGGACGTTTGCTGAGTTTGAGAGTTGTATTCGGAATGAGACTTCCAGAAGGCCGGTTATAACTGGGGATGTTCATCCTTTGCCTCGTTATGTGATGAATTACCTGAAACTGCTTGCGGATTATAGCGATGCTATGGATTCGCTTTTGGAAATCAGTGAAGAGGCTCTTTATCACTTTAAAAATGATTTGGGTGGTGATGAGTCCCAGTTAGAAGCTCTGTCCCCTCTAGGACGACAGATATTGTTGTTGATGTCTGAACTTGAGCACAATCTTGAGGAAAAATCAAAACTTTACGAAGACCATGCATTGCAGCAGGTGTTTTTGATGAACAATCTACATTACCTGGTGCGTAAAGTGAAGGACTCAGATCTTATAGAGGTTTTGGGGGATAATTGGGTTCGTAAGCGCCGCGGTCAGGTACGGCAGTATGCTACGGGGTACCTTAGAGCCTGTTGGAGCAAGGCCTTGGCTTGTTTGAGGGATGAAGGGGTTGGAGGGAGCTCTAATAATGCATCAAGGATGGCTTTGAAGGAGAGATTCAAGAATTTCAACGCGTGTTTTGAAGATATATACAGGGTTCAGACAGCTTGGAAGGTACCCGATGACCAGCTTCGTGAAGAGATGCGAATAAATATATCAGAGAAGGTGATACCTGCATACCGCTCGTTTATGGGGAGATTTAGTGGTCAGCTGGAGGGAAGACATGCAGGCAAATACATCAAGTATGTACCAGAGGATCTAGAGACTTATTTATTAGATTTATTTGAAGGATCACCTGCTGTATTACATCACATAAGGAGAAAGAGTACATAG

Protein sequence

>MS.gene057174.t1

MAATTTNHGGGGATGAGGDDRVLATAQQILKSLKAPKEDREDMLLIFSTFDNRLSGITDLINGDDSKSSKSDDDDEDLDRFEAAEKVILNDSSLSTESSRQSTSLFDPPNDPEVYFNAVDEIIQWMEHFTISPPINSAGKTGKIILDRADNAIQVAMSRLEDELRHVLICNTVPPDAVSRCSTNRRSSMSFSSQDGAGGFDDNSGSFGDVGDPGSHRFHERGVSLGDDLFVDLVRPESILNLKDIIDRMVRSGYERECLQVYSSVRRDALVECLAILGVEKLSIEEVQKFEWKSLDERMKNWVQAVKVVVRVLLSGEKRLCDSLFGDLEDVKEMCFNETAKGCVMMLLNFGEAVAICKRSPEKLFRILDMYEVLRDALPELEDMVTDEFVITEAKGVLRGLGEAVKGTFAEFESCIRNETSRRPVITGDVHPLPRYVMNYLKLLADYSDAMDSLLEISEEALYHFKNDLGGDESQLEALSPLGRQILLLMSELEHNLEEKSKLYEDHALQQVFLMNNLHYLVRKVKDSDLIEVLGDNWVRKRRGQVRQYATGYLRACWSKALACLRDEGVGGSSNNASRMALKERFKNFNACFEDIYRVQTAWKVPDDQLREEMRINISEKVIPAYRSFMGRFSGQLEGRHAGKYIKYVPEDLETYLLDLFEGSPAVLHHIRRKST