Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52848.t1 | XP_013468664.1 | 96.5 | 544 | 18 | 1 | 1 | 543 | 2 | 545 | 5.50E-307 | 1062.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52848.t1 | Q9LSW2 | 61.4 | 546 | 198 | 2 | 1 | 543 | 14 | 549 | 3.8e-192 | 672.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52848.t1 | A0A072VM47 | 96.5 | 544 | 18 | 1 | 1 | 543 | 2 | 545 | 3.9e-307 | 1062.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052256 | MS.gene52848 | 0.801484 | 8.81E-49 | -1.69E-46 |
MS.gene052665 | MS.gene52848 | 0.802114 | 6.54E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52848.t1 | MTR_1g073920 | 96.507 | 544 | 18 | 1 | 1 | 543 | 2 | 545 | 0.0 | 1096 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52848.t1 | AT5G43500 | 61.355 | 546 | 198 | 2 | 1 | 543 | 2 | 537 | 0.0 | 688 |
MS.gene52848.t1 | AT5G43500 | 61.355 | 546 | 198 | 2 | 1 | 543 | 14 | 549 | 0.0 | 687 |
MS.gene52848.t1 | AT5G43500 | 60.161 | 497 | 185 | 2 | 1 | 494 | 2 | 488 | 0.0 | 613 |
MS.gene52848.t1 | AT5G43500 | 60.161 | 497 | 185 | 2 | 1 | 494 | 14 | 500 | 0.0 | 613 |
Find 125 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAAATCTGTACCTTCTTT+TGG | 0.143352 | 1.4:-60762887 | None:intergenic |
GTGAAGGAAGCGCAGATTTA+AGG | 0.219002 | 1.4:-60760439 | None:intergenic |
CCACGATTATCAAATGTTTC+TGG | 0.235555 | 1.4:-60763681 | None:intergenic |
TGATCTTGAACATTCTTCTT+AGG | 0.237962 | 1.4:-60760725 | None:intergenic |
GGTACAGATTTGAAGGAAAT+TGG | 0.238968 | 1.4:+60762896 | MS.gene52848:CDS |
ACTGTTGAAGATACCGTTTC+TGG | 0.255750 | 1.4:+60761594 | MS.gene52848:CDS |
ATGCAATGAGGGATATTATA+AGG | 0.277489 | 1.4:-60760680 | None:intergenic |
ACTATCTATCACAATGTTAA+TGG | 0.289655 | 1.4:+60767218 | MS.gene52848:CDS |
ACTGTATCAATTGCTTCATT+TGG | 0.293011 | 1.4:-60767739 | None:intergenic |
TTGAGGATCTACGTGCTATT+TGG | 0.294266 | 1.4:+60763586 | MS.gene52848:CDS |
TCGTCTTCAGTTTCAGCATT+AGG | 0.312854 | 1.4:+60762371 | MS.gene52848:CDS |
GGTTCTGCAAATATTAGAAT+TGG | 0.330623 | 1.4:+60760638 | MS.gene52848:intron |
GTCGGACATGTCAGACCTTC+GGG | 0.346155 | 1.4:-60767195 | None:intergenic |
AGATGAGACTAGTGAGTCTT+TGG | 0.346917 | 1.4:+60762862 | MS.gene52848:CDS |
AACATATCTGTTCGAATTTG+TGG | 0.349833 | 1.4:-60766115 | None:intergenic |
TGAGGATCTACGTGCTATTT+GGG | 0.355838 | 1.4:+60763587 | MS.gene52848:CDS |
ATTCTTCTTAGGAACTTGTT+TGG | 0.368771 | 1.4:-60760714 | None:intergenic |
CATGCCACAAACAGAAATAA+AGG | 0.379273 | 1.4:+60763816 | MS.gene52848:intron |
CTTACGAGGGAAAGAGTTAC+TGG | 0.381614 | 1.4:-60761629 | None:intergenic |
TAAGAAGAATGTTCAAGATC+AGG | 0.389217 | 1.4:+60760727 | MS.gene52848:CDS |
GTATCAATTGCTTCATTTGG+AGG | 0.400578 | 1.4:-60767736 | None:intergenic |
GCTATTAGGTTATACAATCA+AGG | 0.404540 | 1.4:+60767885 | MS.gene52848:intron |
AGTTACAACTGCACAGCATA+TGG | 0.406231 | 1.4:+60761452 | MS.gene52848:CDS |
ATTGGACGACATAAACAATA+TGG | 0.409714 | 1.4:-60762986 | None:intergenic |
TGCAAATATTAGAATTGGAT+TGG | 0.415664 | 1.4:+60760643 | MS.gene52848:CDS |
TGCAATGAGGGATATTATAA+GGG | 0.416246 | 1.4:-60760679 | None:intergenic |
GGAAATTCTATCTGTAGTAC+TGG | 0.418480 | 1.4:+60763837 | MS.gene52848:CDS |
TGGGTTGATTACAACGAGAT+TGG | 0.431225 | 1.4:-60760483 | None:intergenic |
TTCGAATTTGTGGCCAGGTC+TGG | 0.433048 | 1.4:-60766105 | None:intergenic |
GCACAGATGGGGCGCGCTGA+TGG | 0.454386 | 1.4:+60762284 | MS.gene52848:intron |
ACAGCTTGTGTAGTGAATAT+TGG | 0.458030 | 1.4:+60764045 | MS.gene52848:CDS |
AAAAGAAGGTACAGATTTGA+AGG | 0.461794 | 1.4:+60762889 | MS.gene52848:CDS |
TGTCGGACATGTCAGACCTT+CGG | 0.465786 | 1.4:-60767196 | None:intergenic |
TATTGCATAGGTTCCTCCTA+TGG | 0.468761 | 1.4:+60766976 | MS.gene52848:intron |
GGAAAGATTCACCCTTCACT+TGG | 0.475731 | 1.4:+60762321 | MS.gene52848:CDS |
CATTTGTGTCATGGAAGGGC+GGG | 0.476693 | 1.4:+60767918 | MS.gene52848:CDS |
ATCCTCCTCCACCACGGACT+TGG | 0.480153 | 1.4:+60767035 | MS.gene52848:CDS |
TTCAAATGTCCTCTGCGGAT+TGG | 0.480699 | 1.4:-60763004 | None:intergenic |
TGGCACCACTTTGTCCTCAT+AGG | 0.480851 | 1.4:-60766838 | None:intergenic |
CCCTTCCATGACACAAATGT+TGG | 0.481668 | 1.4:-60767914 | None:intergenic |
AGTCTTGTCTTGTGAGATCC+TGG | 0.484114 | 1.4:-60766858 | None:intergenic |
CAGTAACTCTTTCCCTCGTA+AGG | 0.484178 | 1.4:+60761630 | MS.gene52848:CDS |
TAGTTCCTGCAGTTGAAGAA+AGG | 0.486225 | 1.4:+60767585 | MS.gene52848:CDS |
AAGTTCAGAAAGTTCATTTG+TGG | 0.487448 | 1.4:+60762932 | MS.gene52848:CDS |
GGCGGCGTGGCTCTGACAAA+TGG | 0.490488 | 1.4:+60767560 | MS.gene52848:CDS |
GTACTGGAAGAACTCTGCTT+TGG | 0.490704 | 1.4:+60763853 | MS.gene52848:CDS |
TTTAACATTAACAGATCGAT+TGG | 0.492015 | 1.4:-60766145 | None:intergenic |
ATCTGTTCGAATTTGTGGCC+AGG | 0.492395 | 1.4:-60766110 | None:intergenic |
TGGCTCAGCAGTGGTGCACC+AGG | 0.497650 | 1.4:+60763873 | MS.gene52848:CDS |
ATCTACGTGCTATTTGGGAC+TGG | 0.505622 | 1.4:+60763592 | MS.gene52848:CDS |
ATTGCATAGGTTCCTCCTAT+GGG | 0.508669 | 1.4:+60766977 | MS.gene52848:intron |
ACAGCATATGGAAAGGGAAA+AGG | 0.511763 | 1.4:+60761464 | MS.gene52848:CDS |
CTATTAGGTTATACAATCAA+GGG | 0.512637 | 1.4:+60767886 | MS.gene52848:intron |
ACCAACTGCATTCTCTCAGC+TGG | 0.513823 | 1.4:+60767323 | MS.gene52848:CDS |
AACCAAGTCCGTGGTGGAGG+AGG | 0.516033 | 1.4:-60767037 | None:intergenic |
TATGAGGACAAAGTGGTGCC+AGG | 0.517306 | 1.4:+60766840 | MS.gene52848:CDS |
TGTAGTGAATATTGGTGCTC+AGG | 0.518128 | 1.4:+60764053 | MS.gene52848:CDS |
TGCAGTAGTTCATTCCTATG+AGG | 0.519165 | 1.4:+60766824 | MS.gene52848:CDS |
ACAGACCTTTCTTCAACTGC+AGG | 0.519639 | 1.4:-60767590 | None:intergenic |
CACAAAGACATCACCAGACC+TGG | 0.520166 | 1.4:+60766092 | MS.gene52848:CDS |
CATAAACAATATGGTTCAGT+GGG | 0.521195 | 1.4:-60762977 | None:intergenic |
ATTTGTGTCATGGAAGGGCG+GGG | 0.530610 | 1.4:+60767919 | MS.gene52848:CDS |
TCCAACATTTGTGTCATGGA+AGG | 0.542569 | 1.4:+60767913 | MS.gene52848:CDS |
AACTGCACAGCATATGGAAA+GGG | 0.542759 | 1.4:+60761458 | MS.gene52848:CDS |
CACTTGGACTAATGTTTACG+AGG | 0.545644 | 1.4:+60762337 | MS.gene52848:CDS |
CAAATCCAACATTTGTGTCA+TGG | 0.547362 | 1.4:+60767909 | MS.gene52848:CDS |
ACTAACCAAGTCCGTGGTGG+AGG | 0.552841 | 1.4:-60767040 | None:intergenic |
GGTGGAGGAGGATACACATC+AGG | 0.561073 | 1.4:-60767025 | None:intergenic |
ATCTATCACAATGTTAATGG+AGG | 0.561134 | 1.4:+60767221 | MS.gene52848:CDS |
GTGACATGTACCTGCTGCAT+GGG | 0.562567 | 1.4:-60763043 | None:intergenic |
CCAGAAACATTTGATAATCG+TGG | 0.568663 | 1.4:+60763681 | MS.gene52848:CDS |
GACATCAATTATATGCATAG+AGG | 0.569721 | 1.4:+60764077 | MS.gene52848:CDS |
AGCTGGATAACTTTCCCACA+TGG | 0.579450 | 1.4:-60767249 | None:intergenic |
TACATGTTTCTTTCATTGCG+AGG | 0.582238 | 1.4:-60763639 | None:intergenic |
GAGTCTTTGGACCCAAAAGA+AGG | 0.582561 | 1.4:+60762875 | MS.gene52848:CDS |
GAAGGTTCTTCATCCAGAAA+CGG | 0.582688 | 1.4:-60761607 | None:intergenic |
TATAATGAGCAATGCAATGA+GGG | 0.584288 | 1.4:-60760691 | None:intergenic |
ACATAAACAATATGGTTCAG+TGG | 0.591646 | 1.4:-60762978 | None:intergenic |
AGGATATGCTAGAAGATACA+TGG | 0.596286 | 1.4:+60767159 | MS.gene52848:CDS |
CCAACATTTGTGTCATGGAA+GGG | 0.599203 | 1.4:+60767914 | MS.gene52848:CDS |
CAGAAAGTTCATTTGTGGCG+AGG | 0.601311 | 1.4:+60762937 | MS.gene52848:CDS |
GATGTCTTTGTGTATAGAGA+AGG | 0.601867 | 1.4:-60766081 | None:intergenic |
ACCAGCTGAGAGAATGCAGT+TGG | 0.602297 | 1.4:-60767324 | None:intergenic |
CGTTCTGACATAACTTGTGA+AGG | 0.603077 | 1.4:-60760455 | None:intergenic |
CGAGGGAAAGAGTTACTGGA+AGG | 0.606527 | 1.4:-60761625 | None:intergenic |
GTAAACATTAGTCCAAGTGA+AGG | 0.610678 | 1.4:-60762333 | None:intergenic |
ACAACACTATCCCATGCAGC+AGG | 0.612753 | 1.4:+60763033 | MS.gene52848:CDS |
ACATTTGTGTCATGGAAGGG+CGG | 0.614236 | 1.4:+60767917 | MS.gene52848:CDS |
AAATGAAGCAATTGATACAG+TGG | 0.621512 | 1.4:+60767741 | MS.gene52848:CDS |
CAACTGCACAGCATATGGAA+AGG | 0.621679 | 1.4:+60761457 | MS.gene52848:CDS |
TATCTTCTAGCATATCCTCA+TGG | 0.625355 | 1.4:-60767154 | None:intergenic |
TCTATCACAATGTTAATGGA+GGG | 0.625885 | 1.4:+60767222 | MS.gene52848:CDS |
GGATAGAACAATCCCATAGG+AGG | 0.628934 | 1.4:-60766989 | None:intergenic |
ACTCTGCTTTGGCTCAGCAG+TGG | 0.631545 | 1.4:+60763864 | MS.gene52848:CDS |
TAAACATTAGTCCAAGTGAA+GGG | 0.632014 | 1.4:-60762332 | None:intergenic |
AGAAAATCTTGGCCTTGCAG+AGG | 0.635161 | 1.4:+60767295 | MS.gene52848:CDS |
AAGAAATCATATACCTTACG+AGG | 0.639184 | 1.4:-60761643 | None:intergenic |
GTTGGATAGAACAATCCCAT+AGG | 0.642202 | 1.4:-60766992 | None:intergenic |
GCTGGATAACTTTCCCACAT+GGG | 0.649782 | 1.4:-60767248 | None:intergenic |
TGCTAGGTTTAATGACCATG+AGG | 0.650205 | 1.4:+60767139 | MS.gene52848:intron |
TTATCAGGAAGGACTTGCTG+CGG | 0.652812 | 1.4:+60764002 | MS.gene52848:intron |
TGTGTCATGGAAGGGCGGGG+CGG | 0.653067 | 1.4:+60767922 | MS.gene52848:CDS |
TGCACTAACCAAGTCCGTGG+TGG | 0.653843 | 1.4:-60767043 | None:intergenic |
AACATTGTGATAGATAGTGT+CGG | 0.656239 | 1.4:-60767213 | None:intergenic |
GCAATGAGGGATATTATAAG+GGG | 0.657448 | 1.4:-60760678 | None:intergenic |
TCATTCCTATGAGGACAAAG+TGG | 0.658798 | 1.4:+60766833 | MS.gene52848:CDS |
TGAAGCAATTGATACAGTGG+AGG | 0.664138 | 1.4:+60767744 | MS.gene52848:CDS |
AGTGACATGTACCTGCTGCA+TGG | 0.665261 | 1.4:-60763044 | None:intergenic |
AATCTCGTTGTAATCAACCC+AGG | 0.667580 | 1.4:+60760485 | MS.gene52848:CDS |
AGTTGGTAATAGCCTCTGCA+AGG | 0.670862 | 1.4:-60767307 | None:intergenic |
GAATGCACTAACCAAGTCCG+TGG | 0.674854 | 1.4:-60767046 | None:intergenic |
GTATAATGAGCAATGCAATG+AGG | 0.675081 | 1.4:-60760692 | None:intergenic |
ATGTGTATCCTCCTCCACCA+CGG | 0.675895 | 1.4:+60767029 | MS.gene52848:CDS |
AGAAATCATATACCTTACGA+GGG | 0.682496 | 1.4:-60761642 | None:intergenic |
TTGGACTAATGTTTACGAGG+AGG | 0.691273 | 1.4:+60762340 | MS.gene52848:CDS |
TCTGGAATAGACTGGCGGCG+TGG | 0.691757 | 1.4:+60767547 | MS.gene52848:intron |
AAGGGTGAATCTTTCCTGTG+TGG | 0.694794 | 1.4:-60762314 | None:intergenic |
AAATATTCAAATGTCCTCTG+CGG | 0.696571 | 1.4:-60763009 | None:intergenic |
TAAACAATATGGTTCAGTGG+GGG | 0.697515 | 1.4:-60762975 | None:intergenic |
CTGATGGACAAAATCCACAC+AGG | 0.705164 | 1.4:+60762300 | MS.gene52848:CDS |
TCACAAGTTATGTCAGAACG+TGG | 0.710551 | 1.4:+60760458 | MS.gene52848:CDS |
TTATGTCGTCCAATCCGCAG+AGG | 0.714929 | 1.4:+60762995 | MS.gene52848:CDS |
TTAATGGAGGGATGCCCATG+TGG | 0.717952 | 1.4:+60767234 | MS.gene52848:CDS |
TAATGGAGGGATGCCCATGT+GGG | 0.735919 | 1.4:+60767235 | MS.gene52848:CDS |
ATAAACAATATGGTTCAGTG+GGG | 0.752024 | 1.4:-60762976 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 60760434 | 60767943 | 60760434 | ID=MS.gene52848 |
chr1.4 | mRNA | 60760434 | 60767943 | 60760434 | ID=MS.gene52848.t1;Parent=MS.gene52848 |
chr1.4 | exon | 60760434 | 60760506 | 60760434 | ID=MS.gene52848.t1.exon1;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60760434 | 60760506 | 60760434 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60760639 | 60760748 | 60760639 | ID=MS.gene52848.t1.exon2;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60760639 | 60760748 | 60760639 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60761438 | 60761497 | 60761438 | ID=MS.gene52848.t1.exon3;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60761438 | 60761497 | 60761438 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60761586 | 60761651 | 60761586 | ID=MS.gene52848.t1.exon4;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60761586 | 60761651 | 60761586 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60762290 | 60762392 | 60762290 | ID=MS.gene52848.t1.exon5;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60762290 | 60762392 | 60762290 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60762849 | 60763054 | 60762849 | ID=MS.gene52848.t1.exon6;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60762849 | 60763054 | 60762849 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60763582 | 60763702 | 60763582 | ID=MS.gene52848.t1.exon7;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60763582 | 60763702 | 60763582 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60763830 | 60763894 | 60763830 | ID=MS.gene52848.t1.exon8;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60763830 | 60763894 | 60763830 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60764009 | 60764098 | 60764009 | ID=MS.gene52848.t1.exon9;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60764009 | 60764098 | 60764009 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60764590 | 60764640 | 60764590 | ID=MS.gene52848.t1.exon10;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60764590 | 60764640 | 60764590 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60766067 | 60766198 | 60766067 | ID=MS.gene52848.t1.exon11;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60766067 | 60766198 | 60766067 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60766804 | 60766893 | 60766804 | ID=MS.gene52848.t1.exon12;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60766804 | 60766893 | 60766804 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60766986 | 60767056 | 60766986 | ID=MS.gene52848.t1.exon13;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60766986 | 60767056 | 60766986 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60767145 | 60767344 | 60767145 | ID=MS.gene52848.t1.exon14;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60767145 | 60767344 | 60767145 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60767426 | 60767469 | 60767426 | ID=MS.gene52848.t1.exon15;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60767426 | 60767469 | 60767426 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60767557 | 60767606 | 60767557 | ID=MS.gene52848.t1.exon16;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60767557 | 60767606 | 60767557 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60767720 | 60767765 | 60767720 | ID=MS.gene52848.t1.exon17;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60767720 | 60767765 | 60767720 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
chr1.4 | exon | 60767893 | 60767943 | 60767893 | ID=MS.gene52848.t1.exon18;Parent=MS.gene52848.t1 |
chr1.4 | CDS | 60767893 | 60767943 | 60767893 | ID=cds.MS.gene52848.t1;Parent=MS.gene52848.t1 |
Gene Sequence |
Protein sequence |