Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052256.t1 | XP_003599303.2 | 95.5 | 288 | 13 | 0 | 9 | 296 | 93 | 380 | 3.40E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052256.t1 | Q8R3F5 | 38.4 | 284 | 165 | 4 | 14 | 289 | 82 | 363 | 2.7e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052256.t1 | G7J0N6 | 95.5 | 288 | 13 | 0 | 9 | 296 | 93 | 380 | 2.5e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene052256 | 0.830696 | 2.54E-55 | -1.69E-46 |
| MS.gene049758 | MS.gene052256 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene050558 | MS.gene052256 | 0.812825 | 3.49E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene052256 | 0.832709 | 8.10E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene052256 | 0.811107 | 8.26E-51 | -1.69E-46 |
| MS.gene052254 | MS.gene052256 | 0.970228 | 2.68E-131 | -1.69E-46 |
| MS.gene052256 | MS.gene052665 | 0.814035 | 1.89E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene053132 | 0.841056 | 5.99E-58 | -1.69E-46 |
| MS.gene052256 | MS.gene054942 | 0.837609 | 4.70E-57 | -1.69E-46 |
| MS.gene052256 | MS.gene056069 | -0.810961 | 8.89E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene057260 | 0.818838 | 1.59E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene058851 | 0.807559 | 4.77E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene06001 | 0.818864 | 1.57E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene060476 | 0.830638 | 2.62E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene061618 | 0.801058 | 1.08E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene06420 | 0.837661 | 4.56E-57 | -1.69E-46 |
| MS.gene052256 | MS.gene064679 | 0.856661 | 2.77E-62 | -1.69E-46 |
| MS.gene052256 | MS.gene065378 | 0.818437 | 1.96E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene065392 | 0.832871 | 7.38E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene06594 | 0.852489 | 4.46E-61 | -1.69E-46 |
| MS.gene052256 | MS.gene067029 | 0.8623 | 5.59E-64 | -1.69E-46 |
| MS.gene052256 | MS.gene06806 | 0.856922 | 2.32E-62 | -1.69E-46 |
| MS.gene052256 | MS.gene068972 | 0.862397 | 5.22E-64 | -1.69E-46 |
| MS.gene052256 | MS.gene070036 | 0.806358 | 8.55E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene070038 | 0.820135 | 8.05E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene07089 | 0.82516 | 5.45E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene071290 | 0.816323 | 5.87E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene071772 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene07368 | 0.802922 | 4.46E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene073827 | 0.806881 | 6.63E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene073833 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene074465 | 0.816096 | 6.59E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene08829 | 0.830841 | 2.34E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene08982 | 0.830468 | 2.89E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene09136 | 0.827516 | 1.50E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene09264 | 0.827327 | 1.66E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene21089 | 0.832491 | 9.17E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene22983 | 0.807464 | 4.99E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene24118 | 0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene25077 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene25889 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene28929 | 0.821546 | 3.81E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene30964 | 0.803433 | 3.49E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene31148 | 0.807594 | 4.68E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene32052 | 0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene34039 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene35147 | 0.81539 | 9.48E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene36120 | 0.872073 | 4.21E-67 | -1.69E-46 |
| MS.gene052256 | MS.gene38293 | 0.828726 | 7.66E-55 | -1.69E-46 |
| MS.gene052256 | MS.gene39038 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene40106 | 0.820833 | 5.56E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene41132 | 0.850144 | 2.05E-60 | -1.69E-46 |
| MS.gene052256 | MS.gene42327 | 0.809298 | 2.03E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene42724 | 0.843304 | 1.52E-58 | -1.69E-46 |
| MS.gene052256 | MS.gene43974 | 0.821705 | 3.50E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene44007 | 0.82534 | 4.95E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene44135 | -0.808769 | 2.63E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene45498 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene47955 | 0.805734 | 1.16E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene49330 | 0.801837 | 7.46E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene50595 | 0.821485 | 3.94E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene52848 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene54286 | 0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene55732 | 0.811895 | 5.57E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene56179 | 0.819438 | 1.16E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene56555 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene57121 | 0.809423 | 1.91E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene59498 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene59876 | 0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene62682 | 0.806136 | 9.53E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene63484 | 0.817417 | 3.33E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene63492 | 0.800779 | 1.23E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene63887 | 0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene63927 | 0.836298 | 1.02E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene64799 | 0.802353 | 5.84E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene68933 | 0.802178 | 6.35E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene68959 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene69935 | 0.814992 | 1.16E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene70565 | 0.828024 | 1.13E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene70566 | 0.809398 | 1.93E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene70819 | 0.822913 | 1.84E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene73391 | 0.811736 | 6.03E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene74889 | 0.800508 | 1.39E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene74960 | 0.809799 | 1.58E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene74980 | 0.800664 | 1.30E-48 | -1.69E-46 |
| MS.gene052256 | MS.gene75477 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene76043 | -0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene76590 | 0.806568 | 7.72E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene78973 | 0.825514 | 4.50E-54 | -1.69E-46 |
| MS.gene052256 | MS.gene79290 | 0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene052256 | MS.gene81421 | 0.83321 | 6.08E-56 | -1.69E-46 |
| MS.gene052256 | MS.gene82040 | 0.819239 | 1.29E-52 | -1.69E-46 |
| MS.gene052256 | MS.gene84396 | 0.81285 | 3.45E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene86350 | 0.811188 | 7.93E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene86678 | 0.821946 | 3.08E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene87697 | 0.813032 | 3.14E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene88087 | 0.841035 | 6.06E-58 | -1.69E-46 |
| MS.gene052256 | MS.gene88229 | 0.803062 | 4.17E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene89721 | 0.801259 | 9.80E-49 | -1.69E-46 |
| MS.gene052256 | MS.gene92548 | 0.811339 | 7.36E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene93731 | 0.819913 | 9.05E-53 | -1.69E-46 |
| MS.gene052256 | MS.gene96810 | 0.811356 | 7.29E-51 | -1.69E-46 |
| MS.gene052256 | MS.gene97857 | 0.81573 | 7.96E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAGAAAAATATGTAATTA+TGG | - | 20889:5292-5311 | MS.gene052256:intron | 15.0% |
| !! | ATAAAAAAAACTTCTACTAT+TGG | - | 20889:4180-4199 | MS.gene052256:intron | 15.0% |
| !! | TTAAAAAAAAAACAACTCAA+AGG | + | 20889:5590-5609 | MS.gene052256:intergenic | 15.0% |
| !! | TTTATAAACAACAAATTTCA+TGG | + | 20889:4942-4961 | MS.gene052256:intergenic | 15.0% |
| !!! | AAATTGACTGTATTATATTT+TGG | - | 20889:6050-6069 | MS.gene052256:intron | 15.0% |
| !!! | ATGAAATTTGTTGTTTATAA+AGG | - | 20889:4941-4960 | MS.gene052256:intron | 15.0% |
| !!! | GTTTAAATTACAACTATTTT+TGG | - | 20889:3576-3595 | MS.gene052256:intron | 15.0% |
| !!! | TTGTTTTGTATTATGTATTT+AGG | - | 20889:3623-3642 | MS.gene052256:intron | 15.0% |
| !! | AAGTACAAAAATAATGACAT+TGG | + | 20889:3953-3972 | MS.gene052256:intergenic | 20.0% |
| !! | ACAAATCGAATTAAATACAT+GGG | + | 20889:5650-5669 | MS.gene052256:intergenic | 20.0% |
| !! | TACAAATCGAATTAAATACA+TGG | + | 20889:5651-5670 | MS.gene052256:intergenic | 20.0% |
| !! | TTTAGTATAAACGAAAATCA+AGG | - | 20889:3725-3744 | MS.gene052256:intron | 20.0% |
| !!! | AACATGGTAATCAATTTTTT+TGG | + | 20889:5202-5221 | MS.gene052256:intergenic | 20.0% |
| !!! | TTTTTTGGACAAAAAATACA+TGG | + | 20889:5187-5206 | MS.gene052256:intergenic | 20.0% |
| ! | AAACTTTAAATGACTCATAC+TGG | + | 20889:5394-5413 | MS.gene052256:intergenic | 25.0% |
| ! | AAATTACATATATGCCTCTA+TGG | + | 20889:4967-4986 | MS.gene052256:intergenic | 25.0% |
| ! | AATATCTTCTTTATTGTGTC+AGG | + | 20889:6382-6401 | MS.gene052256:intergenic | 25.0% |
| ! | AATTGAACTTCTAATGCAAT+TGG | - | 20889:6464-6483 | MS.gene052256:intron | 25.0% |
| ! | ACAAAAATAATGACATTGGA+TGG | + | 20889:3949-3968 | MS.gene052256:intergenic | 25.0% |
| ! | AGTCATTACAATCTAGTAAA+TGG | - | 20889:5432-5451 | MS.gene052256:intron | 25.0% |
| ! | ATCTCAAATATTCCTAAACT+GGG | + | 20889:3978-3997 | MS.gene052256:intergenic | 25.0% |
| ! | CAAATATTTCTTGAAACGTT+GGG | + | 20889:5270-5289 | MS.gene052256:intergenic | 25.0% |
| ! | GGAATAAAAAGAGAATAAAG+AGG | - | 20889:4851-4870 | MS.gene052256:intron | 25.0% |
| ! | GTAAATCAAGACAAAAAAAG+TGG | + | 20889:5617-5636 | MS.gene052256:intergenic | 25.0% |
| ! | GTTAACATTATCAACGAAAT+AGG | - | 20889:4741-4760 | MS.gene052256:intron | 25.0% |
| ! | GTTGGGAAAAATATGAAAAA+CGG | + | 20889:5253-5272 | MS.gene052256:intergenic | 25.0% |
| ! | TAGCAGAATTATAAAACTAG+AGG | + | 20889:6632-6651 | MS.gene052256:intergenic | 25.0% |
| ! | TCAAATATTTCTTGAAACGT+TGG | + | 20889:5271-5290 | MS.gene052256:intergenic | 25.0% |
| ! | TGACACAATAAAGAAGATAT+TGG | - | 20889:6381-6400 | MS.gene052256:intron | 25.0% |
| ! | TTAAATGTAACAGAAGTCTA+AGG | + | 20889:4294-4313 | MS.gene052256:intergenic | 25.0% |
| ! | TTCTTGATGTATGCATTAAT+GGG | - | 20889:3653-3672 | MS.gene052256:CDS | 25.0% |
| ! | TTCTTTATGATATGACGAAA+CGG | - | 20889:3817-3836 | MS.gene052256:CDS | 25.0% |
| ! | TTGTTATAATAGTTCCAGTT+GGG | + | 20889:4602-4621 | MS.gene052256:intergenic | 25.0% |
| !! | CTCTGTAATCATGATTTTAA+AGG | - | 20889:4830-4849 | MS.gene052256:intron | 25.0% |
| !!! | AATATGAGTTGGTTTGTAAT+CGG | - | 20889:4455-4474 | MS.gene052256:intron | 25.0% |
| !!! | CTGCTAACTTTTATTTTATC+TGG | - | 20889:6646-6665 | MS.gene052256:intron | 25.0% |
| !!! | CTTTAAAATCATGATTACAG+AGG | + | 20889:4832-4851 | MS.gene052256:intergenic | 25.0% |
| !!! | GACTGTATTATATTTTGGTA+GGG | - | 20889:6055-6074 | MS.gene052256:intron | 25.0% |
| !!! | TCAAGGTTGTTATTTTATTG+AGG | - | 20889:3742-3761 | MS.gene052256:intron | 25.0% |
| !!! | TGACTGTATTATATTTTGGT+AGG | - | 20889:6054-6073 | MS.gene052256:intron | 25.0% |
| AATTCTACTGTCATGGTAAA+AGG | + | 20889:5327-5346 | MS.gene052256:intergenic | 30.0% | |
| ACAATTAGAAGTTGAATCAC+TGG | - | 20889:4505-4524 | MS.gene052256:CDS | 30.0% | |
| ACTGAAATTGGTGAAACTAA+GGG | - | 20889:5685-5704 | MS.gene052256:intron | 30.0% | |
| AGATAAATGCTCTCTTATCA+GGG | + | 20889:4687-4706 | MS.gene052256:intergenic | 30.0% | |
| AGGCATTATTACTTTGCAAA+AGG | + | 20889:6198-6217 | MS.gene052256:intergenic | 30.0% | |
| ATACCATCTATGAGAAGTTT+AGG | - | 20889:5471-5490 | MS.gene052256:intron | 30.0% | |
| ATATGTAATTATGGCGTATG+TGG | - | 20889:5301-5320 | MS.gene052256:intron | 30.0% | |
| ATCATCTATACTTGATCAAC+AGG | + | 20889:4402-4421 | MS.gene052256:intergenic | 30.0% | |
| ATTGTCAAAAGAATGGACAA+AGG | - | 20889:6690-6709 | MS.gene052256:CDS | 30.0% | |
| CAACTCATATTACACTGTTA+TGG | + | 20889:4446-4465 | MS.gene052256:intergenic | 30.0% | |
| CAGTTTAGGAATATTTGAGA+TGG | - | 20889:3977-3996 | MS.gene052256:intron | 30.0% | |
| CATAACAGTGTAATATGAGT+TGG | - | 20889:4444-4463 | MS.gene052256:intron | 30.0% | |
| CATCTCAAATATTCCTAAAC+TGG | + | 20889:3979-3998 | MS.gene052256:intergenic | 30.0% | |
| CATTATTACTTTGCAAAAGG+TGG | + | 20889:6195-6214 | MS.gene052256:intergenic | 30.0% | |
| CTGAAGAAAAGCTATGAATT+GGG | - | 20889:6544-6563 | MS.gene052256:CDS | 30.0% | |
| CTTCTTGATGTATGCATTAA+TGG | - | 20889:3652-3671 | MS.gene052256:CDS | 30.0% | |
| GTTGTTATAATAGTTCCAGT+TGG | + | 20889:4603-4622 | MS.gene052256:intergenic | 30.0% | |
| TAAAATCATGATTACAGAGG+AGG | + | 20889:4829-4848 | MS.gene052256:intergenic | 30.0% | |
| TAAATACCCCAAAATCTCAT+TGG | + | 20889:3543-3562 | MS.gene052256:intergenic | 30.0% | |
| TATGCATTCTAGTGTAGAAA+AGG | + | 20889:4905-4924 | MS.gene052256:intergenic | 30.0% | |
| TCCATTTACAAACAACAGAA+AGG | - | 20889:4038-4057 | MS.gene052256:intron | 30.0% | |
| TCTCAAATATTCCTAAACTG+GGG | + | 20889:3977-3996 | MS.gene052256:intergenic | 30.0% | |
| TTTACCATGACAGTAGAATT+AGG | - | 20889:5327-5346 | MS.gene052256:intron | 30.0% | |
| ! | AAGAAAGCCAATGAGATTTT+GGG | - | 20889:3533-3552 | MS.gene052256:intron | 30.0% |
| ! | AAGCCTTTTAATATTAGACG+GGG | - | 20889:4630-4649 | MS.gene052256:intron | 30.0% |
| ! | CAAGCCTTTTAATATTAGAC+GGG | - | 20889:4629-4648 | MS.gene052256:intron | 30.0% |
| ! | CCAAGCCTTTTAATATTAGA+CGG | - | 20889:4628-4647 | MS.gene052256:intron | 30.0% |
| ! | TAGAAACAGAATTTTGCCTA+AGG | + | 20889:6006-6025 | MS.gene052256:intergenic | 30.0% |
| ! | TCCTTTCTGTTGTTTGTAAA+TGG | + | 20889:4042-4061 | MS.gene052256:intergenic | 30.0% |
| ! | TTAGTGTTATCGATTGTGAA+TGG | - | 20889:3871-3890 | MS.gene052256:CDS | 30.0% |
| ! | TTTTCCTAATTCTACTGTCA+TGG | + | 20889:5334-5353 | MS.gene052256:intergenic | 30.0% |
| !! | GTTATTTTATTGAGGTGGAA+GGG | - | 20889:3750-3769 | MS.gene052256:intron | 30.0% |
| !! | TTATTTTATCTGGACTCTTC+AGG | - | 20889:6656-6675 | MS.gene052256:CDS | 30.0% |
| !!! | AGGTTGTTATTTTATTGAGG+TGG | - | 20889:3745-3764 | MS.gene052256:intron | 30.0% |
| !!! | TGTTATTTTATTGAGGTGGA+AGG | - | 20889:3749-3768 | MS.gene052256:intron | 30.0% |
| AAAGAAGATATTGGCACAAC+AGG | - | 20889:6390-6409 | MS.gene052256:intron | 35.0% | |
| ACTCTCAAGTCTCAAATTTC+TGG | + | 20889:4367-4386 | MS.gene052256:intergenic | 35.0% | |
| AGAAAGCAAAGAATCTGCAA+TGG | - | 20889:3895-3914 | MS.gene052256:CDS | 35.0% | |
| AGGCATAAAAGGAATAGAAG+TGG | - | 20889:6096-6115 | MS.gene052256:intron | 35.0% | |
| ATAACATATCCTCAGTGTGT+TGG | - | 20889:4091-4110 | MS.gene052256:CDS | 35.0% | |
| ATTGAAAACATCGGAGCTTA+AGG | - | 20889:6720-6739 | MS.gene052256:CDS | 35.0% | |
| ATTTATGTGCAAAACCACAC+AGG | + | 20889:5551-5570 | MS.gene052256:intergenic | 35.0% | |
| CAGGTTCCATAAAACTAGTA+TGG | + | 20889:6264-6283 | MS.gene052256:intergenic | 35.0% | |
| CATAAAAGGAATAGAAGTGG+TGG | - | 20889:6099-6118 | MS.gene052256:intron | 35.0% | |
| CCGTCTAATATTAAAAGGCT+TGG | + | 20889:4631-4650 | MS.gene052256:intergenic | 35.0% | |
| CTGAAATTGGTGAAACTAAG+GGG | - | 20889:5686-5705 | MS.gene052256:intron | 35.0% | |
| CTGCATGATGAAAAAATCAG+TGG | + | 20889:4017-4036 | MS.gene052256:intergenic | 35.0% | |
| GAATTCAACAGTTATCAGTC+AGG | - | 20889:3690-3709 | MS.gene052256:CDS | 35.0% | |
| GACTGAAATTGGTGAAACTA+AGG | - | 20889:5684-5703 | MS.gene052256:intron | 35.0% | |
| GAGAAGCAGTAGAAAAAACA+TGG | + | 20889:5218-5237 | MS.gene052256:intergenic | 35.0% | |
| GAGATAAATGCTCTCTTATC+AGG | + | 20889:4688-4707 | MS.gene052256:intergenic | 35.0% | |
| GATTCTGTTGATGTTTCATG+TGG | - | 20889:5082-5101 | MS.gene052256:CDS | 35.0% | |
| GCTATTATATTTCACCCAAC+TGG | - | 20889:4585-4604 | MS.gene052256:intron | 35.0% | |
| GCTGAAGAAAAGCTATGAAT+TGG | - | 20889:6543-6562 | MS.gene052256:CDS | 35.0% | |
| GGGAAAAATATGAAAAACGG+AGG | + | 20889:5250-5269 | MS.gene052256:intergenic | 35.0% | |
| GTAACCATTGTTCTTTATCC+AGG | - | 20889:5812-5831 | MS.gene052256:intron | 35.0% | |
| GTTGTTTATAAAGGCCATAG+AGG | - | 20889:4950-4969 | MS.gene052256:intron | 35.0% | |
| TAATGACATTGGATGGAATG+TGG | + | 20889:3942-3961 | MS.gene052256:intergenic | 35.0% | |
| TATGTTAAGTGACCCAACTA+CGG | - | 20889:5363-5382 | MS.gene052256:intron | 35.0% | |
| TCCAACACAAAAGACATAAG+TGG | - | 20889:6436-6455 | MS.gene052256:intron | 35.0% | |
| TCCATTGAGATTCAAGAACA+CGG | + | 20889:6607-6626 | MS.gene052256:intergenic | 35.0% | |
| TGCTGGAATTGTCAAAAGAA+TGG | - | 20889:6683-6702 | MS.gene052256:CDS | 35.0% | |
| TGGAAATGACTGGTATTCTT+GGG | + | 20889:6333-6352 | MS.gene052256:intergenic | 35.0% | |
| TTGGAAATGACTGGTATTCT+TGG | + | 20889:6334-6353 | MS.gene052256:intergenic | 35.0% | |
| TTTATGTGCAAAACCACACA+GGG | + | 20889:5550-5569 | MS.gene052256:intergenic | 35.0% | |
| ! | ACCACTTATGTCTTTTGTGT+TGG | + | 20889:6440-6459 | MS.gene052256:intergenic | 35.0% |
| ! | AGAAAGCCAATGAGATTTTG+GGG | - | 20889:3534-3553 | MS.gene052256:intron | 35.0% |
| ! | CAAGAAAGCCAATGAGATTT+TGG | - | 20889:3532-3551 | MS.gene052256:intron | 35.0% |
| ! | GTAATAATGCCTTTTCCTCA+TGG | - | 20889:6206-6225 | MS.gene052256:intron | 35.0% |
| ! | GTTGAATTCAGCTTTTCCTT+CGG | + | 20889:3679-3698 | MS.gene052256:intergenic | 35.0% |
| ! | TTTTGTACTTTCCCCAGTTT+AGG | - | 20889:3963-3982 | MS.gene052256:intron | 35.0% |
| !! | CGATTTGTAAGCTTTGAAGA+TGG | - | 20889:5662-5681 | MS.gene052256:intron | 35.0% |
| !! | CTTTGAAGATGGACTGAAAT+TGG | - | 20889:5673-5692 | MS.gene052256:intron | 35.0% |
| !! | GGTGCTGATATTGAAAACAT+CGG | - | 20889:6711-6730 | MS.gene052256:CDS | 35.0% |
| !! | GTGTGGTTTTGCACATAAAT+TGG | - | 20889:5551-5570 | MS.gene052256:intron | 35.0% |
| !!! | ATCTGGCTTTTAACAACCTT+AGG | - | 20889:5987-6006 | MS.gene052256:intron | 35.0% |
| !!! | CGCTTTCCATACTAGTTTTA+TGG | - | 20889:6255-6274 | MS.gene052256:intron | 35.0% |
| AAAAGCTATGAATTGGGACC+TGG | - | 20889:6550-6569 | MS.gene052256:intron | 40.0% | |
| AGCAAGACTTGTGACATACA+GGG | + | 20889:5017-5036 | MS.gene052256:intergenic | 40.0% | |
| AGCTGACAAGCTGAAAACAA+AGG | + | 20889:5497-5516 | MS.gene052256:intergenic | 40.0% | |
| AGGCCTAAACTTCTCATAGA+TGG | + | 20889:5477-5496 | MS.gene052256:intergenic | 40.0% | |
| AGGTTACTTACCCTGTTCAA+TGG | - | 20889:6488-6507 | MS.gene052256:intron | 40.0% | |
| AGTGAAGACTCTTCTATCCA+AGG | - | 20889:6519-6538 | MS.gene052256:CDS | 40.0% | |
| ATCATTCATCCAACACACTG+AGG | + | 20889:4103-4122 | MS.gene052256:intergenic | 40.0% | |
| ATGATTACAGAGGAGGTCTA+AGG | + | 20889:4822-4841 | MS.gene052256:intergenic | 40.0% | |
| ATGTTAAGTGACCCAACTAC+GGG | - | 20889:5364-5383 | MS.gene052256:intron | 40.0% | |
| ATTGTGTCAGGATCTGTATG+TGG | + | 20889:6370-6389 | MS.gene052256:intergenic | 40.0% | |
| CAGCCCCGTCTAATATTAAA+AGG | + | 20889:4636-4655 | MS.gene052256:intergenic | 40.0% | |
| CCAATTACCTATGTCCAGTA+AGG | - | 20889:5955-5974 | MS.gene052256:intron | 40.0% | |
| CCTTACTGGACATAGGTAAT+TGG | + | 20889:5958-5977 | MS.gene052256:intergenic | 40.0% | |
| CGTAAACTTTCTACCTTTCC+AGG | + | 20889:6571-6590 | MS.gene052256:intergenic | 40.0% | |
| GAACTTCTAATGCAATTGGC+AGG | - | 20889:6468-6487 | MS.gene052256:intron | 40.0% | |
| GAATCACTGGAAATCACTTC+TGG | - | 20889:4518-4537 | MS.gene052256:intron | 40.0% | |
| GCATCCTGGATAAAGAACAA+TGG | + | 20889:5819-5838 | MS.gene052256:intergenic | 40.0% | |
| GCATTTACGTTGGAAATGAC+TGG | + | 20889:6343-6362 | MS.gene052256:intergenic | 40.0% | |
| GGAAATGACTGGTATTCTTG+GGG | + | 20889:6332-6351 | MS.gene052256:intergenic | 40.0% | |
| GGTCACTTAACATATCCACT+CGG | + | 20889:5357-5376 | MS.gene052256:intergenic | 40.0% | |
| GGTTACTTACCCTGTTCAAT+GGG | - | 20889:6489-6508 | MS.gene052256:intron | 40.0% | |
| GTAGAATTAGGAAAACCGAG+TGG | - | 20889:5339-5358 | MS.gene052256:intron | 40.0% | |
| GTGAAGACTCTTCTATCCAA+GGG | - | 20889:6520-6539 | MS.gene052256:CDS | 40.0% | |
| GTTTCATGTGGTTTGAGCTT+AGG | - | 20889:5094-5113 | MS.gene052256:CDS | 40.0% | |
| TATGTCCAGTAAGGTTCTTG+AGG | - | 20889:5964-5983 | MS.gene052256:intron | 40.0% | |
| TCAAGAACCTTACTGGACAT+AGG | + | 20889:5965-5984 | MS.gene052256:intergenic | 40.0% | |
| TCCGTGTTCTTGAATCTCAA+TGG | - | 20889:6603-6622 | MS.gene052256:intron | 40.0% | |
| TGAAAAACGGAGGCAATGAA+AGG | + | 20889:5240-5259 | MS.gene052256:intergenic | 40.0% | |
| TGAAGACTCTTCTATCCAAG+GGG | - | 20889:6521-6540 | MS.gene052256:CDS | 40.0% | |
| TTGTACAAAACTGCAGCAGA+AGG | + | 20889:3515-3534 | MS.gene052256:intergenic | 40.0% | |
| ! | ATAATGCCTTTTCCTCATGG+TGG | - | 20889:6209-6228 | MS.gene052256:intron | 40.0% |
| ! | ATTTTATTGAGGTGGAAGGG+TGG | - | 20889:3753-3772 | MS.gene052256:intron | 40.0% |
| ! | CTTTTAATATTAGACGGGGC+TGG | - | 20889:4634-4653 | MS.gene052256:intron | 40.0% |
| ! | TTCAAGAACACGGAGAGTAT+AGG | + | 20889:6597-6616 | MS.gene052256:intergenic | 40.0% |
| !! | ACTGTTGTTTCCCATTGAAC+AGG | + | 20889:6502-6521 | MS.gene052256:intergenic | 40.0% |
| !! | CTGTTGTTTCCCATTGAACA+GGG | + | 20889:6501-6520 | MS.gene052256:intergenic | 40.0% |
| ACTACCACAGATTACCTGCA+TGG | + | 20889:5717-5736 | MS.gene052256:intergenic | 45.0% | |
| AGCCAAAGCGAAGTCTTTCA+AGG | - | 20889:6123-6142 | MS.gene052256:intron | 45.0% | |
| AGCCTTGAAAGACTTCGCTT+TGG | + | 20889:6128-6147 | MS.gene052256:intergenic | 45.0% | |
| ATACTGGAAACCCCGTAGTT+GGG | + | 20889:5378-5397 | MS.gene052256:intergenic | 45.0% | |
| ATCTGAACCTTCTCAGCTTC+AGG | + | 20889:5933-5952 | MS.gene052256:intergenic | 45.0% | |
| ATTGGATGGAATGTGGTGCA+GGG | + | 20889:3935-3954 | MS.gene052256:intergenic | 45.0% | |
| CAGATCCTCAAGAACCTTAC+TGG | + | 20889:5972-5991 | MS.gene052256:intergenic | 45.0% | |
| CAGCAAGACTTGTGACATAC+AGG | + | 20889:5018-5037 | MS.gene052256:intergenic | 45.0% | |
| CAGTAAGGTTCTTGAGGATC+TGG | - | 20889:5970-5989 | MS.gene052256:intron | 45.0% | |
| CGAAACGGCATGAAGTTAAG+TGG | - | 20889:3832-3851 | MS.gene052256:CDS | 45.0% | |
| CTATGAATTGGGACCTGGAA+AGG | - | 20889:6555-6574 | MS.gene052256:intron | 45.0% | |
| GAAGTCTTTCAAGGCTCGAA+TGG | - | 20889:6132-6151 | MS.gene052256:intron | 45.0% | |
| GATGCTGCTGATGCTACTAA+AGG | - | 20889:5834-5853 | MS.gene052256:intron | 45.0% | |
| GCTTGTCAGCTTGTAGCATA+TGG | - | 20889:5506-5525 | MS.gene052256:intron | 45.0% | |
| GGCTGAAGCAGAGAATTAGA+TGG | + | 20889:4992-5011 | MS.gene052256:intergenic | 45.0% | |
| TAGGGAAACTATGCTGTCTC+TGG | - | 20889:6073-6092 | MS.gene052256:intron | 45.0% | |
| TATTGGCACAACAGGTATGC+AGG | - | 20889:6398-6417 | MS.gene052256:intron | 45.0% | |
| TCACTGGAAATCACTTCTGG+TGG | - | 20889:4521-4540 | MS.gene052256:intron | 45.0% | |
| TGTTAAGTGACCCAACTACG+GGG | - | 20889:5365-5384 | MS.gene052256:intron | 45.0% | |
| TTGCTGCTGTTGAGCTACTT+CGG | - | 20889:5032-5051 | MS.gene052256:intron | 45.0% | |
| ! | ATAGCTTTTCTTCAGCCCCT+TGG | + | 20889:6539-6558 | MS.gene052256:intergenic | 45.0% |
| ! | ATGTGGCAGAGCATTTACGT+TGG | + | 20889:6353-6372 | MS.gene052256:intergenic | 45.0% |
| ! | CTTAGGAGAGTATACTGCTC+TGG | - | 20889:5111-5130 | MS.gene052256:CDS | 45.0% |
| ! | TCTTGGGGTTCTAATGTCTG+TGG | + | 20889:6317-6336 | MS.gene052256:intergenic | 45.0% |
| ! | TGGACTCTTCAGGTTATTGC+TGG | - | 20889:6666-6685 | MS.gene052256:CDS | 45.0% |
| ! | TGTATGCATTAATGGGCCGA+AGG | - | 20889:3660-3679 | MS.gene052256:CDS | 45.0% |
| !! | GAAGAAGTATCTTCCCTGTG+TGG | - | 20889:5534-5553 | MS.gene052256:intron | 45.0% |
| !! | TAAAGGTGCCATGGTTAGTG+TGG | - | 20889:5851-5870 | MS.gene052256:intron | 45.0% |
| !! | TGATGCTACTAAAGGTGCCA+TGG | - | 20889:5842-5861 | MS.gene052256:intron | 45.0% |
| AGACTTGTGACATACAGGGC+AGG | + | 20889:5013-5032 | MS.gene052256:intergenic | 50.0% | |
| AGCTTCAGGCACTTCCTGAT+TGG | + | 20889:5919-5938 | MS.gene052256:intergenic | 50.0% | |
| ATACTGCTCTGGCGTTTGCT+GGG | - | 20889:5122-5141 | MS.gene052256:CDS | 50.0% | |
| CAGTCCTACCACACTAACCA+TGG | + | 20889:5862-5881 | MS.gene052256:intergenic | 50.0% | |
| CATACTGGAAACCCCGTAGT+TGG | + | 20889:5379-5398 | MS.gene052256:intergenic | 50.0% | |
| CATGGTTAGTGTGGTAGGAC+TGG | - | 20889:5860-5879 | MS.gene052256:intron | 50.0% | |
| CATTGGATGGAATGTGGTGC+AGG | + | 20889:3936-3955 | MS.gene052256:intergenic | 50.0% | |
| GAAGCCATGCAGGTAATCTG+TGG | - | 20889:5710-5729 | MS.gene052256:intron | 50.0% | |
| GCTTCCAATCTTGACACTGC+AGG | + | 20889:6283-6302 | MS.gene052256:intergenic | 50.0% | |
| GGAAACTATGCTGTCTCTGG+AGG | - | 20889:6076-6095 | MS.gene052256:intron | 50.0% | |
| GGAACCTGCAGTGTCAAGAT+TGG | - | 20889:6276-6295 | MS.gene052256:intron | 50.0% | |
| GGTGCACAAGCTGTTGGAAT+GGG | - | 20889:3469-3488 | MS.gene052256:CDS | 50.0% | |
| GTGCTCAAGTGCAGACAATG+CGG | + | 20889:4779-4798 | MS.gene052256:intergenic | 50.0% | |
| GTTGTGTGATGCAGCCAATC+AGG | - | 20889:5902-5921 | MS.gene052256:intron | 50.0% | |
| TAGTAGCATCAGCAGCATCC+TGG | + | 20889:5833-5852 | MS.gene052256:intergenic | 50.0% | |
| TATACTGCTCTGGCGTTTGC+TGG | - | 20889:5121-5140 | MS.gene052256:CDS | 50.0% | |
| TGCTGCTGTTGAGCTACTTC+GGG | - | 20889:5033-5052 | MS.gene052256:intron | 50.0% | |
| ! | GCTGTCTCTGGAGGCATAAA+AGG | - | 20889:6085-6104 | MS.gene052256:intron | 50.0% |
| ! | TACAGAGGAGGTCTAAGGTC+TGG | + | 20889:4817-4836 | MS.gene052256:intergenic | 50.0% |
| AAGGTCTGGTGAGGAGGGAA+TGG | + | 20889:4803-4822 | MS.gene052256:intergenic | 55.0% | |
| ACTAAGGGGTGAAGCCATGC+AGG | - | 20889:5700-5719 | MS.gene052256:intron | 55.0% | |
| CACCTGCCACCATGAGGAAA+AGG | + | 20889:6218-6237 | MS.gene052256:intergenic | 55.0% | |
| GGTAGGACTGGACTCAGAGA+AGG | - | 20889:5872-5891 | MS.gene052256:intron | 55.0% | |
| TGGCTGCATCACACAACTGC+TGG | + | 20889:5899-5918 | MS.gene052256:intergenic | 55.0% | |
| ! | AGGAGGTCTAAGGTCTGGTG+AGG | + | 20889:4812-4831 | MS.gene052256:intergenic | 55.0% |
| ! | AGGTCTAAGGTCTGGTGAGG+AGG | + | 20889:4809-4828 | MS.gene052256:intergenic | 55.0% |
| ! | GGTCTAAGGTCTGGTGAGGA+GGG | + | 20889:4808-4827 | MS.gene052256:intergenic | 55.0% |
| ! | GGTGCCATGGTTAGTGTGGT+AGG | - | 20889:5855-5874 | MS.gene052256:intron | 55.0% |
| ! | TACTGCTCTGGCGTTTGCTG+GGG | - | 20889:5123-5142 | MS.gene052256:CDS | 55.0% |
| ! | TGCCTTTTCCTCATGGTGGC+AGG | - | 20889:6213-6232 | MS.gene052256:intron | 55.0% |
| !! | ATTAGACGGGGCTGGCTACA+TGG | - | 20889:4642-4661 | MS.gene052256:intron | 55.0% |
| !! | GGAAGTGCCTGAAGCTGAGA+AGG | - | 20889:5923-5942 | MS.gene052256:intron | 55.0% |
| GAGCTACTTCGGGCACGTGA+GGG | - | 20889:5043-5062 | MS.gene052256:intron | 60.0% | |
| TGAGCTACTTCGGGCACGTG+AGG | - | 20889:5042-5061 | MS.gene052256:intron | 60.0% | |
| ! | TGGCGTTTGCTGGGGCTTTC+AGG | - | 20889:5131-5150 | MS.gene052256:CDS | 60.0% |
| CTACTTCGGGCACGTGAGGG+AGG | - | 20889:5046-5065 | MS.gene052256:intron | 65.0% | |
| !! | GGAAAGCGCCTGCAACAGCC+AGG | + | 20889:6243-6262 | MS.gene052256:intergenic | 65.0% |
| CAGGCGCACCTGCCACCATG+AGG | + | 20889:6224-6243 | MS.gene052256:intergenic | 70.0% | |
| CAGGTGCGCCTGGCTGTTGC+AGG | - | 20889:6232-6251 | MS.gene052256:intron | 70.0% | |
| CTCATGGTGGCAGGTGCGCC+TGG | - | 20889:6222-6241 | MS.gene052256:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 20889 | gene | 3469 | 6740 | 3469 | ID=MS.gene052256 |
| 20889 | mRNA | 3469 | 6740 | 3469 | ID=MS.gene052256.t1;Parent=MS.gene052256 |
| 20889 | exon | 6654 | 6740 | 6654 | ID=MS.gene052256.t1.exon1;Parent=MS.gene052256.t1 |
| 20889 | CDS | 6654 | 6740 | 6654 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 6498 | 6564 | 6498 | ID=MS.gene052256.t1.exon2;Parent=MS.gene052256.t1 |
| 20889 | CDS | 6498 | 6564 | 6498 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 5057 | 5199 | 5057 | ID=MS.gene052256.t1.exon3;Parent=MS.gene052256.t1 |
| 20889 | CDS | 5057 | 5199 | 5057 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 4488 | 4536 | 4488 | ID=MS.gene052256.t1.exon4;Parent=MS.gene052256.t1 |
| 20889 | CDS | 4488 | 4536 | 4488 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 4238 | 4375 | 4238 | ID=MS.gene052256.t1.exon5;Parent=MS.gene052256.t1 |
| 20889 | CDS | 4238 | 4375 | 4238 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 4053 | 4133 | 4053 | ID=MS.gene052256.t1.exon6;Parent=MS.gene052256.t1 |
| 20889 | CDS | 4053 | 4133 | 4053 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 3798 | 3974 | 3798 | ID=MS.gene052256.t1.exon7;Parent=MS.gene052256.t1 |
| 20889 | CDS | 3798 | 3974 | 3798 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 3633 | 3719 | 3633 | ID=MS.gene052256.t1.exon8;Parent=MS.gene052256.t1 |
| 20889 | CDS | 3633 | 3719 | 3633 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| 20889 | exon | 3469 | 3531 | 3469 | ID=MS.gene052256.t1.exon9;Parent=MS.gene052256.t1 |
| 20889 | CDS | 3469 | 3531 | 3469 | ID=cds.MS.gene052256.t1;Parent=MS.gene052256.t1 |
| Gene Sequence |
| Protein sequence |
