Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52894.t1 | AES75245.1 | 98 | 710 | 12 | 1 | 1 | 708 | 1 | 710 | 0.00E+00 | 1203.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52894.t1 | O80548 | 67.4 | 576 | 183 | 3 | 132 | 702 | 105 | 680 | 1.9e-220 | 766.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52894.t1 | G7KQ72 | 98.0 | 710 | 12 | 1 | 1 | 708 | 1 | 710 | 0.0e+00 | 1203.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52894 | MS.gene48290 | PPI |
| MS.gene52894 | MS.gene033329 | PPI |
| MS.gene52894 | MS.gene059971 | PPI |
| MS.gene52894 | MS.gene011370 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52894.t1 | MTR_6g034560 | 98.451 | 710 | 9 | 1 | 1 | 708 | 1 | 710 | 0.0 | 1438 |
| MS.gene52894.t1 | MTR_4g104360 | 54.738 | 707 | 299 | 7 | 1 | 697 | 1 | 696 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52894.t1 | AT1G22730 | 61.898 | 706 | 241 | 11 | 11 | 707 | 2 | 688 | 0.0 | 845 |
| MS.gene52894.t1 | AT5G63190 | 53.274 | 672 | 295 | 8 | 31 | 697 | 39 | 696 | 0.0 | 697 |
| MS.gene52894.t1 | AT5G63190 | 53.274 | 672 | 295 | 8 | 31 | 697 | 39 | 696 | 0.0 | 697 |
| MS.gene52894.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 664 |
| MS.gene52894.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 2.88e-67 | 235 |
| MS.gene52894.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 664 |
| MS.gene52894.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 2.88e-67 | 235 |
| MS.gene52894.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 664 |
| MS.gene52894.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 2.88e-67 | 235 |
| MS.gene52894.t1 | AT4G24800 | 52.143 | 700 | 318 | 9 | 5 | 697 | 2 | 691 | 0.0 | 664 |
| MS.gene52894.t1 | AT4G24800 | 42.160 | 287 | 164 | 2 | 115 | 401 | 412 | 696 | 2.88e-67 | 235 |
| MS.gene52894.t1 | AT3G48390 | 53.584 | 586 | 257 | 6 | 115 | 697 | 54 | 627 | 0.0 | 625 |
| MS.gene52894.t1 | AT3G48390 | 42.193 | 301 | 160 | 6 | 412 | 706 | 52 | 344 | 1.41e-58 | 209 |
Find 111 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCATTGACTTGCGCCTTC+GGG | 0.204997 | 6.1:-21165163 | None:intergenic |
| AAAAGAAGAATGAGAGATTA+TGG | 0.206234 | 6.1:+21167878 | MS.gene52894:CDS |
| AATAACACTCCACCTTTCTT+TGG | 0.211680 | 6.1:-21165239 | None:intergenic |
| ATGAGTGAAGTTAGAGAAAT+TGG | 0.214850 | 6.1:+21166401 | MS.gene52894:CDS |
| ACAAAATAGTAGCTGTATTC+TGG | 0.235608 | 6.1:-21166428 | None:intergenic |
| ACTATGTATCAAATGGTTAA+AGG | 0.247508 | 6.1:+21167937 | MS.gene52894:CDS |
| CTGCCATTGACTTGCGCCTT+CGG | 0.248791 | 6.1:-21165164 | None:intergenic |
| CCACCTGATGATGTTGTAAA+TGG | 0.254363 | 6.1:+21167439 | MS.gene52894:CDS |
| ATCGGCCGATTCGACTAATT+TGG | 0.260265 | 6.1:-21166570 | None:intergenic |
| TGAAGAAGCTCTTGATGATT+TGG | 0.280860 | 6.1:+21167972 | MS.gene52894:CDS |
| TATCAAATGGTTAAAGGGTT+TGG | 0.310183 | 6.1:+21167943 | MS.gene52894:CDS |
| CTGTCATAGTTCGGATCATT+GGG | 0.332315 | 6.1:-21166009 | None:intergenic |
| AGCTCTTGATGATTTGGCTT+TGG | 0.347710 | 6.1:+21167978 | MS.gene52894:CDS |
| ATCTTGAGATGTTGGGGTGG+GGG | 0.350219 | 6.1:+21167682 | MS.gene52894:CDS |
| CTATGTATCAAATGGTTAAA+GGG | 0.356224 | 6.1:+21167938 | MS.gene52894:CDS |
| TGAGGTTGTTAAGAAAAGTT+TGG | 0.364181 | 6.1:+21167843 | MS.gene52894:CDS |
| GAAGATGTGAAAGATATGAT+AGG | 0.364316 | 6.1:+21167733 | MS.gene52894:CDS |
| AAAGAAGAATGAGAGATTAT+GGG | 0.365088 | 6.1:+21167879 | MS.gene52894:CDS |
| AGAAATCATCGAACGGCGTT+GGG | 0.365926 | 6.1:+21166778 | MS.gene52894:CDS |
| TTGCTAAAAGCAAGACTTGC+TGG | 0.369049 | 6.1:+21167652 | MS.gene52894:CDS |
| ACTTGCGCCTTCGGGGATCT+TGG | 0.375705 | 6.1:-21165155 | None:intergenic |
| TCTCATTGTACAGGTGGTTC+TGG | 0.383793 | 6.1:+21165931 | MS.gene52894:intron |
| ATTGCAATGGATTTCAATGA+TGG | 0.386574 | 6.1:+21165035 | None:intergenic |
| GTTCTGGTGGTAAAGGCACC+TGG | 0.387168 | 6.1:+21165947 | MS.gene52894:CDS |
| TCAGCTCCTTTAGAATCATT+TGG | 0.387224 | 6.1:-21166707 | None:intergenic |
| TGCAAAGGAGAAACAGTTAC+TGG | 0.401474 | 6.1:-21165113 | None:intergenic |
| AGTGAAAAGAGCTCTTATAA+TGG | 0.408893 | 6.1:+21166940 | MS.gene52894:CDS |
| TGAAGTATTCCGCGTGCGTT+CGG | 0.411426 | 6.1:-21167103 | None:intergenic |
| TTCAAGAATGCAACAGAGAA+TGG | 0.426913 | 6.1:+21168081 | MS.gene52894:CDS |
| TGTAGATGCATGAAAGAGTT+AGG | 0.427178 | 6.1:+21167802 | MS.gene52894:CDS |
| CCGCAACAGCTTGAAGATAT+CGG | 0.431757 | 6.1:+21167571 | MS.gene52894:CDS |
| TTCTGGTGGTAAAGGCACCT+GGG | 0.432855 | 6.1:+21165948 | MS.gene52894:CDS |
| ACATCTTCAATTTCCCATCC+TGG | 0.435001 | 6.1:-21167718 | None:intergenic |
| AACACAAGCCAAATGTCAAA+AGG | 0.438065 | 6.1:+21167034 | MS.gene52894:CDS |
| TGAGAGAATCTTGAGATGTT+GGG | 0.443902 | 6.1:+21167675 | MS.gene52894:CDS |
| ACTATTTCGTGATGGAAGAA+TGG | 0.444682 | 6.1:-21166920 | None:intergenic |
| TTGAAGCACTTTGCTTCCAA+TGG | 0.444863 | 6.1:-21167617 | None:intergenic |
| GCTAGAATATCAACCGTATC+CGG | 0.448723 | 6.1:-21166611 | None:intergenic |
| GCTGTCATAGTTCGGATCAT+TGG | 0.450298 | 6.1:-21166010 | None:intergenic |
| ACCTCAGTGCTGTCATAGTT+CGG | 0.456364 | 6.1:-21166018 | None:intergenic |
| GGTGGTAAAGGCACCTGGGG+TGG | 0.457361 | 6.1:+21165952 | MS.gene52894:CDS |
| ATTAATAACTATGTATCAAA+TGG | 0.462836 | 6.1:+21167930 | MS.gene52894:CDS |
| AAACCATTTACAACATCATC+AGG | 0.463345 | 6.1:-21167442 | None:intergenic |
| AATCTTGAGATGTTGGGGTG+GGG | 0.469675 | 6.1:+21167681 | MS.gene52894:CDS |
| GCAAACTGATTCTTAGCATC+AGG | 0.470425 | 6.1:-21168006 | None:intergenic |
| TTGAAAGAAGCTGCTGAAGA+AGG | 0.473326 | 6.1:+21167004 | MS.gene52894:CDS |
| CAGAAATCATCGAACGGCGT+TGG | 0.477555 | 6.1:+21166777 | MS.gene52894:CDS |
| TCCCCGAAGGCGCAAGTCAA+TGG | 0.478035 | 6.1:+21165161 | MS.gene52894:CDS |
| ACAGGTGGTTCTGGTGGTAA+AGG | 0.492160 | 6.1:+21165940 | MS.gene52894:intron |
| AAAGAATAGAGAGAAAGAAA+TGG | 0.492573 | 6.1:+21167387 | MS.gene52894:CDS |
| TGCTATGTTTCTAGCAAGAT+CGG | 0.494473 | 6.1:+21167528 | MS.gene52894:CDS |
| CGAAAGCGGCTTCCGAAGGT+TGG | 0.494784 | 6.1:+21167137 | MS.gene52894:CDS |
| TTCGGGGATCTTGGTGACTT+AGG | 0.498074 | 6.1:-21165146 | None:intergenic |
| GTGAGAGAATCTTGAGATGT+TGG | 0.499361 | 6.1:+21167674 | MS.gene52894:CDS |
| TTGAAAGAATATGTTGTAAG+TGG | 0.503740 | 6.1:+21166854 | MS.gene52894:CDS |
| AGATATGATAGGGAAATTGT+TGG | 0.506777 | 6.1:+21167744 | MS.gene52894:CDS |
| GCAAGATCTTCGACAACTAC+AGG | 0.507056 | 6.1:-21167508 | None:intergenic |
| TCTTTCAATAAGTCTAATAA+CGG | 0.514449 | 6.1:-21166989 | None:intergenic |
| AAAGCTTGTCTCGATGTCAA+TGG | 0.514528 | 6.1:+21166454 | MS.gene52894:CDS |
| GAATCTTGAGATGTTGGGGT+GGG | 0.520362 | 6.1:+21167680 | MS.gene52894:CDS |
| AAGATGTGAAAGATATGATA+GGG | 0.521203 | 6.1:+21167734 | MS.gene52894:CDS |
| ATTCACCAAATTAGTCGAAT+CGG | 0.521270 | 6.1:+21166565 | MS.gene52894:CDS |
| TTGTTGGAGGAATATGAATC+TGG | 0.521956 | 6.1:+21167760 | MS.gene52894:CDS |
| TGGAAGCAAAGTGCTTCAAA+TGG | 0.525673 | 6.1:+21167621 | MS.gene52894:CDS |
| AACGATGGACGTCCAAAGAA+AGG | 0.527199 | 6.1:+21165227 | MS.gene52894:CDS |
| TAGAGAGAAAGAAATGGCTT+CGG | 0.528261 | 6.1:+21167393 | MS.gene52894:CDS |
| TGGAAGTAGCAAACCAGGAT+GGG | 0.530192 | 6.1:+21167705 | MS.gene52894:CDS |
| ATCATCGAACGGCGTTGGGG+AGG | 0.538989 | 6.1:+21166782 | MS.gene52894:CDS |
| GTGGAAGTAGCAAACCAGGA+TGG | 0.539492 | 6.1:+21167704 | MS.gene52894:CDS |
| ACACAAGCCAAATGTCAAAA+GGG | 0.540041 | 6.1:+21167035 | MS.gene52894:CDS |
| AAAGAAAACGAACACTGCAT+TGG | 0.541140 | 6.1:+21166310 | MS.gene52894:CDS |
| ATGTCGAAAGCGGCTTCCGA+AGG | 0.542311 | 6.1:+21167133 | MS.gene52894:CDS |
| TGAAACACATAACCAACCTT+CGG | 0.544071 | 6.1:-21167149 | None:intergenic |
| CCGATATCTTCAAGCTGTTG+CGG | 0.545528 | 6.1:-21167571 | None:intergenic |
| AAGAGCTCTTATAATGGCGA+TGG | 0.546680 | 6.1:+21166946 | MS.gene52894:CDS |
| TCGATGATTTCTGCATGTAA+AGG | 0.548588 | 6.1:-21166767 | None:intergenic |
| AATCCTTTGTAAACTTGTGA+AGG | 0.549640 | 6.1:-21166545 | None:intergenic |
| GATCGTAGACATACCGGATA+CGG | 0.551581 | 6.1:+21166598 | MS.gene52894:CDS |
| AACTTACCAAATGATTCTAA+AGG | 0.552434 | 6.1:+21166701 | MS.gene52894:CDS |
| TTAGGAGAAGAAAGTTGCAA+AGG | 0.555570 | 6.1:-21165128 | None:intergenic |
| GCCATTGACTTGCGCCTTCG+GGG | 0.558121 | 6.1:-21165162 | None:intergenic |
| GAAGCTAATAACATTAGCAA+TGG | 0.558746 | 6.1:+21167360 | MS.gene52894:CDS |
| TATGATAGGGAAATTGTTGG+AGG | 0.565030 | 6.1:+21167747 | MS.gene52894:CDS |
| AAGAAGAATGAGAGATTATG+GGG | 0.565527 | 6.1:+21167880 | MS.gene52894:CDS |
| TACAACAGTTGATGATGTGA+AGG | 0.568694 | 6.1:+21166814 | MS.gene52894:CDS |
| TCTGGTGGTAAAGGCACCTG+GGG | 0.570553 | 6.1:+21165949 | MS.gene52894:CDS |
| TGTATAAGTCAAGATTCCAT+TGG | 0.570910 | 6.1:+21167601 | MS.gene52894:CDS |
| TGTCTCAAGCAATCCACCCC+AGG | 0.573534 | 6.1:-21165965 | None:intergenic |
| CACCCTTCACAAGTTTACAA+AGG | 0.573720 | 6.1:+21166542 | MS.gene52894:CDS |
| GGTTGACGATATTCTTCCAC+CGG | 0.575112 | 6.1:+21166655 | MS.gene52894:CDS |
| TGATTTGATCGTAGACATAC+CGG | 0.578623 | 6.1:+21166592 | MS.gene52894:CDS |
| CATTGTACAGGTGGTTCTGG+TGG | 0.587682 | 6.1:+21165934 | MS.gene52894:intron |
| TCAACAACTAATGTCGAAAG+CGG | 0.595106 | 6.1:+21167123 | MS.gene52894:CDS |
| AGAATCTTGAGATGTTGGGG+TGG | 0.600770 | 6.1:+21167679 | MS.gene52894:CDS |
| AAATGATTCTAAAGGAGCTG+AGG | 0.605077 | 6.1:+21166709 | MS.gene52894:CDS |
| CAGTTGATGATGTGAAGGCA+AGG | 0.614475 | 6.1:+21166819 | MS.gene52894:CDS |
| AAATGTCAAAAGGGTTCACA+AGG | 0.623824 | 6.1:+21167044 | MS.gene52894:CDS |
| GAGAGAATCTTGAGATGTTG+GGG | 0.624381 | 6.1:+21167676 | MS.gene52894:CDS |
| TATGTCTACGATCAAATCAT+CGG | 0.625055 | 6.1:-21166588 | None:intergenic |
| CTCGATATACCGAACGCACG+CGG | 0.625689 | 6.1:+21167094 | MS.gene52894:CDS |
| ATCCTTTGTAAACTTGTGAA+GGG | 0.631092 | 6.1:-21166544 | None:intergenic |
| CAATCACATTCTTCAAACGA+TGG | 0.637153 | 6.1:+21165212 | MS.gene52894:CDS |
| GAAATCATCGAACGGCGTTG+GGG | 0.639485 | 6.1:+21166779 | MS.gene52894:CDS |
| ATCGAGCGATAAATCATCGA+CGG | 0.647255 | 6.1:-21167077 | None:intergenic |
| TAAGTCACCAAGATCCCCGA+AGG | 0.655714 | 6.1:+21165148 | MS.gene52894:CDS |
| CCATTTACAACATCATCAGG+TGG | 0.674193 | 6.1:-21167439 | None:intergenic |
| TGTTGCGACAACATCATCTG+TGG | 0.675115 | 6.1:-21166378 | None:intergenic |
| TACATGCAGAAATCATCGAA+CGG | 0.676367 | 6.1:+21166771 | MS.gene52894:CDS |
| TGTCATAGTTCGGATCATTG+GGG | 0.697339 | 6.1:-21166008 | None:intergenic |
| TTGGAGGAATATGAATCTGG+TGG | 0.719160 | 6.1:+21167763 | MS.gene52894:CDS |
| TCCGAACTATGACAGCACTG+AGG | 0.805865 | 6.1:+21166017 | MS.gene52894:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAACTATGTATCAAA+TGG | + | chr6.1:21167930-21167949 | MS.gene52894:CDS | 15.0% |
| !!! | AACTATTTATATTGTTTTGT+AGG | + | chr6.1:21166268-21166287 | MS.gene52894:intron | 15.0% |
| !! | AAAAACGTAAACATTTGAAT+AGG | + | chr6.1:21165445-21165464 | MS.gene52894:intron | 20.0% |
| !! | ATCTTACAATATATTTGAAC+CGG | + | chr6.1:21165658-21165677 | MS.gene52894:intron | 20.0% |
| !! | ATTCAAGTCCAAAAAATAAT+AGG | + | chr6.1:21165189-21165208 | MS.gene52894:CDS | 20.0% |
| !! | TCTTTCAATAAGTCTAATAA+CGG | - | chr6.1:21166992-21167011 | None:intergenic | 20.0% |
| !!! | TAAAAGTATATTTGTGTTCA+TGG | + | chr6.1:21165627-21165646 | MS.gene52894:intron | 20.0% |
| !!! | TATGTTTATCCAATATTTTG+TGG | - | chr6.1:21165321-21165340 | None:intergenic | 20.0% |
| ! | AAAAGAAGAATGAGAGATTA+TGG | + | chr6.1:21167878-21167897 | MS.gene52894:CDS | 25.0% |
| ! | AAAGAAGAATGAGAGATTAT+GGG | + | chr6.1:21167879-21167898 | MS.gene52894:CDS | 25.0% |
| ! | AAAGAATAGAGAGAAAGAAA+TGG | + | chr6.1:21167387-21167406 | MS.gene52894:CDS | 25.0% |
| ! | AACTTACCAAATGATTCTAA+AGG | + | chr6.1:21166701-21166720 | MS.gene52894:CDS | 25.0% |
| ! | AAGATGTGAAAGATATGATA+GGG | + | chr6.1:21167734-21167753 | MS.gene52894:CDS | 25.0% |
| ! | ACTATGTATCAAATGGTTAA+AGG | + | chr6.1:21167937-21167956 | MS.gene52894:CDS | 25.0% |
| ! | AGCTTCTTCAAAAAAAATCA+TGG | - | chr6.1:21165513-21165532 | None:intergenic | 25.0% |
| ! | ATAAATAGTTGCATATTTGC+TGG | - | chr6.1:21166258-21166277 | None:intergenic | 25.0% |
| ! | ATCAAATGACTAAAGAAAAG+AGG | - | chr6.1:21165819-21165838 | None:intergenic | 25.0% |
| ! | ATGAAAATAGATACACACTA+GGG | - | chr6.1:21165724-21165743 | None:intergenic | 25.0% |
| ! | CACACAAAATATTTATTCTC+CGG | - | chr6.1:21165383-21165402 | None:intergenic | 25.0% |
| ! | CTATGTATCAAATGGTTAAA+GGG | + | chr6.1:21167938-21167957 | MS.gene52894:CDS | 25.0% |
| ! | GCTTCTTCAAAAAAAATCAT+GGG | - | chr6.1:21165512-21165531 | None:intergenic | 25.0% |
| ! | TATGAAAATAGATACACACT+AGG | - | chr6.1:21165725-21165744 | None:intergenic | 25.0% |
| ! | TGATAGTTGAATCTTGAAAT+AGG | + | chr6.1:21165864-21165883 | MS.gene52894:intron | 25.0% |
| ! | TTGAAAGAATATGTTGTAAG+TGG | + | chr6.1:21166854-21166873 | MS.gene52894:CDS | 25.0% |
| !! | ATAGACGTAATTTTACATTG+CGG | + | chr6.1:21165338-21165357 | MS.gene52894:intron | 25.0% |
| !!! | ATTCAAGAGTACTTTTTATC+AGG | + | chr6.1:21167259-21167278 | MS.gene52894:CDS | 25.0% |
| !!! | TAAAAAGTACTCTTGAATGA+TGG | - | chr6.1:21167257-21167276 | None:intergenic | 25.0% |
| !!! | TGTGATTGCCTATTATTTTT+TGG | - | chr6.1:21165200-21165219 | None:intergenic | 25.0% |
| AAAAAGCAAAGAATGAAGGA+TGG | + | chr6.1:21168040-21168059 | MS.gene52894:CDS | 30.0% | |
| AAACCATTTACAACATCATC+AGG | - | chr6.1:21167445-21167464 | None:intergenic | 30.0% | |
| AAGAAGAATGAGAGATTATG+GGG | + | chr6.1:21167880-21167899 | MS.gene52894:CDS | 30.0% | |
| AATCCTTTGTAAACTTGTGA+AGG | - | chr6.1:21166548-21166567 | None:intergenic | 30.0% | |
| ACAAAATAGTAGCTGTATTC+TGG | - | chr6.1:21166431-21166450 | None:intergenic | 30.0% | |
| ACAACCTCATGATGAAAAAA+TGG | - | chr6.1:21167832-21167851 | None:intergenic | 30.0% | |
| ACACGACAAAGAAAAAGAAA+TGG | + | chr6.1:21166481-21166500 | MS.gene52894:CDS | 30.0% | |
| AGATATGATAGGGAAATTGT+TGG | + | chr6.1:21167744-21167763 | MS.gene52894:CDS | 30.0% | |
| AGTGAAAAGAGCTCTTATAA+TGG | + | chr6.1:21166940-21166959 | MS.gene52894:CDS | 30.0% | |
| ATCCTTTGTAAACTTGTGAA+GGG | - | chr6.1:21166547-21166566 | None:intergenic | 30.0% | |
| ATGAGTGAAGTTAGAGAAAT+TGG | + | chr6.1:21166401-21166420 | MS.gene52894:CDS | 30.0% | |
| ATGCGATTTGAATATAACCA+TGG | + | chr6.1:21165894-21165913 | MS.gene52894:intron | 30.0% | |
| ATTCAAAATATTGATCCCCT+AGG | - | chr6.1:21165573-21165592 | None:intergenic | 30.0% | |
| ATTCACCAAATTAGTCGAAT+CGG | + | chr6.1:21166565-21166584 | MS.gene52894:CDS | 30.0% | |
| GAAGATGTGAAAGATATGAT+AGG | + | chr6.1:21167733-21167752 | MS.gene52894:CDS | 30.0% | |
| GAAGCTAATAACATTAGCAA+TGG | + | chr6.1:21167360-21167379 | MS.gene52894:CDS | 30.0% | |
| GTTGAAAAAGCAAAGAATGA+AGG | + | chr6.1:21168036-21168055 | MS.gene52894:CDS | 30.0% | |
| TATCAAATGGTTAAAGGGTT+TGG | + | chr6.1:21167943-21167962 | MS.gene52894:CDS | 30.0% | |
| TATGTCTACGATCAAATCAT+CGG | - | chr6.1:21166591-21166610 | None:intergenic | 30.0% | |
| TGAGGTTGTTAAGAAAAGTT+TGG | + | chr6.1:21167843-21167862 | MS.gene52894:CDS | 30.0% | |
| TGATACAAGGTTGACAAAAA+TGG | - | chr6.1:21165789-21165808 | None:intergenic | 30.0% | |
| TGGTTATATTCAAATCGCAT+CGG | - | chr6.1:21165894-21165913 | None:intergenic | 30.0% | |
| TGTATAAGTCAAGATTCCAT+TGG | + | chr6.1:21167601-21167620 | MS.gene52894:CDS | 30.0% | |
| ! | ACTTGATAACTTATTCCACT+AGG | + | chr6.1:21165289-21165308 | MS.gene52894:intron | 30.0% |
| ! | ATCTGTTTCTTCAAAAATGC+CGG | - | chr6.1:21166677-21166696 | None:intergenic | 30.0% |
| ! | TCTTGTATTGTGTTCTTTTC+AGG | - | chr6.1:21167199-21167218 | None:intergenic | 30.0% |
| ! | TGTTTACGTTTTTCCAAATG+CGG | - | chr6.1:21165438-21165457 | None:intergenic | 30.0% |
| !!! | CTTAAAGAGTGTTTTGAATC+TGG | + | chr6.1:21167907-21167926 | MS.gene52894:CDS | 30.0% |
| !!! | TATGCCATTTTTTCATCATG+AGG | + | chr6.1:21167825-21167844 | MS.gene52894:CDS | 30.0% |
| AAAGAAAACGAACACTGCAT+TGG | + | chr6.1:21166310-21166329 | MS.gene52894:CDS | 35.0% | |
| AAATGTCAAAAGGGTTCACA+AGG | + | chr6.1:21167044-21167063 | MS.gene52894:CDS | 35.0% | |
| AACACAAGCCAAATGTCAAA+AGG | + | chr6.1:21167034-21167053 | MS.gene52894:CDS | 35.0% | |
| AATAACACTCCACCTTTCTT+TGG | - | chr6.1:21165242-21165261 | None:intergenic | 35.0% | |
| ACACAAGCCAAATGTCAAAA+GGG | + | chr6.1:21167035-21167054 | MS.gene52894:CDS | 35.0% | |
| AGATTCACAAGATTCAACCA+TGG | - | chr6.1:21165914-21165933 | None:intergenic | 35.0% | |
| ATCATGGCGTATATCCATTT+AGG | - | chr6.1:21165547-21165566 | None:intergenic | 35.0% | |
| CAAGAGAACAACAAAAACTG+TGG | + | chr6.1:21167313-21167332 | MS.gene52894:CDS | 35.0% | |
| CAATCACATTCTTCAAACGA+TGG | + | chr6.1:21165212-21165231 | MS.gene52894:CDS | 35.0% | |
| GTTCAAATTCTGCAATCCTA+CGG | - | chr6.1:21166143-21166162 | None:intergenic | 35.0% | |
| TACAAGGTTGACAAAAATGG+TGG | - | chr6.1:21165786-21165805 | None:intergenic | 35.0% | |
| TACATGCAGAAATCATCGAA+CGG | + | chr6.1:21166771-21166790 | MS.gene52894:CDS | 35.0% | |
| TAGAGAGAAAGAAATGGCTT+CGG | + | chr6.1:21167393-21167412 | MS.gene52894:CDS | 35.0% | |
| TATGATAGGGAAATTGTTGG+AGG | + | chr6.1:21167747-21167766 | MS.gene52894:CDS | 35.0% | |
| TCAACAACTAATGTCGAAAG+CGG | + | chr6.1:21167123-21167142 | MS.gene52894:CDS | 35.0% | |
| TCGATGATTTCTGCATGTAA+AGG | - | chr6.1:21166770-21166789 | None:intergenic | 35.0% | |
| TCTTGTGAATCTCATTGTAC+AGG | + | chr6.1:21165922-21165941 | MS.gene52894:intron | 35.0% | |
| TGAAACACATAACCAACCTT+CGG | - | chr6.1:21167152-21167171 | None:intergenic | 35.0% | |
| TGAGAGAATCTTGAGATGTT+GGG | + | chr6.1:21167675-21167694 | MS.gene52894:CDS | 35.0% | |
| TGATTTGATCGTAGACATAC+CGG | + | chr6.1:21166592-21166611 | MS.gene52894:CDS | 35.0% | |
| TGTAGATGCATGAAAGAGTT+AGG | + | chr6.1:21167802-21167821 | MS.gene52894:CDS | 35.0% | |
| TTAGGAGAAGAAAGTTGCAA+AGG | - | chr6.1:21165131-21165150 | None:intergenic | 35.0% | |
| TTCAAGAATGCAACAGAGAA+TGG | + | chr6.1:21168081-21168100 | MS.gene52894:CDS | 35.0% | |
| TTGAGAAGCGAAAAGACAAT+TGG | - | chr6.1:21165268-21165287 | None:intergenic | 35.0% | |
| TTGTTGGAGGAATATGAATC+TGG | + | chr6.1:21167760-21167779 | MS.gene52894:CDS | 35.0% | |
| ! | AAATGATTCTAAAGGAGCTG+AGG | + | chr6.1:21166709-21166728 | MS.gene52894:CDS | 35.0% |
| ! | ACAGCACTGGATAAAATCTT+TGG | + | chr6.1:21166191-21166210 | MS.gene52894:intron | 35.0% |
| ! | ACTATTTCGTGATGGAAGAA+TGG | - | chr6.1:21166923-21166942 | None:intergenic | 35.0% |
| ! | ATATACGCCATGATTTTCCT+AGG | + | chr6.1:21165553-21165572 | MS.gene52894:intron | 35.0% |
| ! | ATCTGGTGGTGATAAAAAAG+AGG | + | chr6.1:21167777-21167796 | MS.gene52894:CDS | 35.0% |
| ! | CACTAGGGATTTGTATTGAT+TGG | - | chr6.1:21165709-21165728 | None:intergenic | 35.0% |
| ! | CTCTTTTCACTATTTCGTGA+TGG | - | chr6.1:21166931-21166950 | None:intergenic | 35.0% |
| ! | TATACGCCATGATTTTCCTA+GGG | + | chr6.1:21165554-21165573 | MS.gene52894:intron | 35.0% |
| ! | TGAAGAAGCTCTTGATGATT+TGG | + | chr6.1:21167972-21167991 | MS.gene52894:CDS | 35.0% |
| ! | TTGTGAACCCTTTTGACATT+TGG | - | chr6.1:21167045-21167064 | None:intergenic | 35.0% |
| ! | TTTTGTATCGAATCGTGATC+CGG | - | chr6.1:21165680-21165699 | None:intergenic | 35.0% |
| !! | TACAACAGTTGATGATGTGA+AGG | + | chr6.1:21166814-21166833 | MS.gene52894:CDS | 35.0% |
| !! | TCAGCTCCTTTAGAATCATT+TGG | - | chr6.1:21166710-21166729 | None:intergenic | 35.0% |
| !! | TGCTATGTTTCTAGCAAGAT+CGG | + | chr6.1:21167528-21167547 | MS.gene52894:CDS | 35.0% |
| AAAGCTTGTCTCGATGTCAA+TGG | + | chr6.1:21166454-21166473 | MS.gene52894:CDS | 40.0% | |
| AAGAGCTCTTATAATGGCGA+TGG | + | chr6.1:21166946-21166965 | MS.gene52894:CDS | 40.0% | |
| ACATCTTCAATTTCCCATCC+TGG | - | chr6.1:21167721-21167740 | None:intergenic | 40.0% | |
| AGGTAGCTGCCACAAAATAT+TGG | + | chr6.1:21165309-21165328 | MS.gene52894:intron | 40.0% | |
| AGTTGTTTAGGTGGTGAATG+AGG | - | chr6.1:21165751-21165770 | None:intergenic | 40.0% | |
| ATCGAGCGATAAATCATCGA+CGG | - | chr6.1:21167080-21167099 | None:intergenic | 40.0% | |
| ATGGCGTATATCCATTTAGG+TGG | - | chr6.1:21165544-21165563 | None:intergenic | 40.0% | |
| CACCCTTCACAAGTTTACAA+AGG | + | chr6.1:21166542-21166561 | MS.gene52894:CDS | 40.0% | |
| CATTCACCACCTAAACAACT+TGG | + | chr6.1:21165751-21165770 | MS.gene52894:intron | 40.0% | |
| CCATTTACAACATCATCAGG+TGG | - | chr6.1:21167442-21167461 | None:intergenic | 40.0% | |
| CGACATCACAACCTTAATTG+CGG | + | chr6.1:21165412-21165431 | MS.gene52894:intron | 40.0% | |
| CTGTCATAGTTCGGATCATT+GGG | - | chr6.1:21166012-21166031 | None:intergenic | 40.0% | |
| GAGAGAATCTTGAGATGTTG+GGG | + | chr6.1:21167676-21167695 | MS.gene52894:CDS | 40.0% | |
| GCTAAATTAGCCCACCTAAA+TGG | + | chr6.1:21165530-21165549 | MS.gene52894:intron | 40.0% | |
| GCTAGAATATCAACCGTATC+CGG | - | chr6.1:21166614-21166633 | None:intergenic | 40.0% | |
| GTGAGAGAATCTTGAGATGT+TGG | + | chr6.1:21167674-21167693 | MS.gene52894:CDS | 40.0% | |
| TGCAAAGGAGAAACAGTTAC+TGG | - | chr6.1:21165116-21165135 | None:intergenic | 40.0% | |
| TGGCGTATATCCATTTAGGT+GGG | - | chr6.1:21165543-21165562 | None:intergenic | 40.0% | |
| TGTCATAGTTCGGATCATTG+GGG | - | chr6.1:21166011-21166030 | None:intergenic | 40.0% | |
| TGTGAATCTCATTGTACAGG+TGG | + | chr6.1:21165925-21165944 | MS.gene52894:intron | 40.0% | |
| TGTTTCTTCAAAAATGCCGG+TGG | - | chr6.1:21166674-21166693 | None:intergenic | 40.0% | |
| TTCACAACTGCAATTTAGGC+CGG | + | chr6.1:21165361-21165380 | MS.gene52894:intron | 40.0% | |
| TTGAAAGAAGCTGCTGAAGA+AGG | + | chr6.1:21167004-21167023 | MS.gene52894:CDS | 40.0% | |
| TTGATCCCCTAGGAAAATCA+TGG | - | chr6.1:21165563-21165582 | None:intergenic | 40.0% | |
| TTGCTAAAAGCAAGACTTGC+TGG | + | chr6.1:21167652-21167671 | MS.gene52894:CDS | 40.0% | |
| TTGGAGGAATATGAATCTGG+TGG | + | chr6.1:21167763-21167782 | MS.gene52894:CDS | 40.0% | |
| ! | AAGAGGCTGATGATGATACA+AGG | - | chr6.1:21165802-21165821 | None:intergenic | 40.0% |
| ! | AGCTCTTGATGATTTGGCTT+TGG | + | chr6.1:21167978-21167997 | MS.gene52894:CDS | 40.0% |
| ! | ATACGCCATGATTTTCCTAG+GGG | + | chr6.1:21165555-21165574 | MS.gene52894:intron | 40.0% |
| ! | CCACCTGATGATGTTGTAAA+TGG | + | chr6.1:21167439-21167458 | MS.gene52894:CDS | 40.0% |
| ! | GCAAACTGATTCTTAGCATC+AGG | - | chr6.1:21168009-21168028 | None:intergenic | 40.0% |
| ! | TGGAAGCAAAGTGCTTCAAA+TGG | + | chr6.1:21167621-21167640 | MS.gene52894:CDS | 40.0% |
| ! | TTGAAGCACTTTGCTTCCAA+TGG | - | chr6.1:21167620-21167639 | None:intergenic | 40.0% |
| AACGATGGACGTCCAAAGAA+AGG | + | chr6.1:21165227-21165246 | MS.gene52894:CDS | 45.0% | |
| AATCTTGAGATGTTGGGGTG+GGG | + | chr6.1:21167681-21167700 | MS.gene52894:CDS | 45.0% | |
| ACCTCAGTGCTGTCATAGTT+CGG | - | chr6.1:21166021-21166040 | None:intergenic | 45.0% | |
| AGAAATCATCGAACGGCGTT+GGG | + | chr6.1:21166778-21166797 | MS.gene52894:CDS | 45.0% | |
| AGAATCTTGAGATGTTGGGG+TGG | + | chr6.1:21167679-21167698 | MS.gene52894:CDS | 45.0% | |
| AGGTTGACAAAAATGGTGGC+TGG | - | chr6.1:21165782-21165801 | None:intergenic | 45.0% | |
| CAAATTCTGCAATCCTACGG+TGG | - | chr6.1:21166140-21166159 | None:intergenic | 45.0% | |
| CCGATATCTTCAAGCTGTTG+CGG | - | chr6.1:21167574-21167593 | None:intergenic | 45.0% | |
| CCGCAACAGCTTGAAGATAT+CGG | + | chr6.1:21167571-21167590 | MS.gene52894:CDS | 45.0% | |
| CTGGCTACACCAAGTTGTTT+AGG | - | chr6.1:21165763-21165782 | None:intergenic | 45.0% | |
| GAATCTTGAGATGTTGGGGT+GGG | + | chr6.1:21167680-21167699 | MS.gene52894:CDS | 45.0% | |
| GATCGTAGACATACCGGATA+CGG | + | chr6.1:21166598-21166617 | MS.gene52894:CDS | 45.0% | |
| GCAAGATCTTCGACAACTAC+AGG | - | chr6.1:21167511-21167530 | None:intergenic | 45.0% | |
| GCGGTTCACAACTGCAATTT+AGG | + | chr6.1:21165357-21165376 | MS.gene52894:intron | 45.0% | |
| GCTACACCAAGTTGTTTAGG+TGG | - | chr6.1:21165760-21165779 | None:intergenic | 45.0% | |
| GCTGTCATAGTTCGGATCAT+TGG | - | chr6.1:21166013-21166032 | None:intergenic | 45.0% | |
| GGTTGACGATATTCTTCCAC+CGG | + | chr6.1:21166655-21166674 | MS.gene52894:CDS | 45.0% | |
| TCTCATTGTACAGGTGGTTC+TGG | + | chr6.1:21165931-21165950 | MS.gene52894:intron | 45.0% | |
| TGGAAGTAGCAAACCAGGAT+GGG | + | chr6.1:21167705-21167724 | MS.gene52894:CDS | 45.0% | |
| TGTTGCGACAACATCATCTG+TGG | - | chr6.1:21166381-21166400 | None:intergenic | 45.0% | |
| TTATCCAGTGCTGTCAATCG+CGG | - | chr6.1:21166185-21166204 | None:intergenic | 45.0% | |
| ! | ATTTTGTGGCAGCTACCTAG+TGG | - | chr6.1:21165307-21165326 | None:intergenic | 45.0% |
| ! | GCTTTTCATAGCTAGAGCTG+TGG | + | chr6.1:21166634-21166653 | MS.gene52894:CDS | 45.0% |
| !! | ATCGGCCGATTCGACTAATT+TGG | - | chr6.1:21166573-21166592 | None:intergenic | 45.0% |
| !! | CAGTTGATGATGTGAAGGCA+AGG | + | chr6.1:21166819-21166838 | MS.gene52894:CDS | 45.0% |
| ACCTTAATTGCGGCCGCATT+TGG | + | chr6.1:21165422-21165441 | MS.gene52894:intron | 50.0% | |
| ATCTTGAGATGTTGGGGTGG+GGG | + | chr6.1:21167682-21167701 | MS.gene52894:CDS | 50.0% | |
| CAGAAATCATCGAACGGCGT+TGG | + | chr6.1:21166777-21166796 | MS.gene52894:CDS | 50.0% | |
| GAAATCATCGAACGGCGTTG+GGG | + | chr6.1:21166779-21166798 | MS.gene52894:CDS | 50.0% | |
| GATGGACGTCCAAAGAAAGG+TGG | + | chr6.1:21165230-21165249 | MS.gene52894:intron | 50.0% | |
| GGCGATGGAAAAACGACAAG+CGG | + | chr6.1:21166961-21166980 | MS.gene52894:CDS | 50.0% | |
| GTGGAAGTAGCAAACCAGGA+TGG | + | chr6.1:21167704-21167723 | MS.gene52894:CDS | 50.0% | |
| TAAGTCACCAAGATCCCCGA+AGG | + | chr6.1:21165148-21165167 | MS.gene52894:CDS | 50.0% | |
| TCCAAATGCGGCCGCAATTA+AGG | - | chr6.1:21165426-21165445 | None:intergenic | 50.0% | |
| TCCGAACTATGACAGCACTG+AGG | + | chr6.1:21166017-21166036 | MS.gene52894:CDS | 50.0% | |
| ! | TGAAGTATTCCGCGTGCGTT+CGG | - | chr6.1:21167106-21167125 | None:intergenic | 50.0% |
| ! | TTCGGGGATCTTGGTGACTT+AGG | - | chr6.1:21165149-21165168 | None:intergenic | 50.0% |
| !! | ACAGGTGGTTCTGGTGGTAA+AGG | + | chr6.1:21165940-21165959 | MS.gene52894:intron | 50.0% |
| !! | CATTGTACAGGTGGTTCTGG+TGG | + | chr6.1:21165934-21165953 | MS.gene52894:intron | 50.0% |
| !! | TTCTGGTGGTAAAGGCACCT+GGG | + | chr6.1:21165948-21165967 | MS.gene52894:CDS | 50.0% |
| AAGCGCTATAGCACCACCGT+AGG | + | chr6.1:21166124-21166143 | MS.gene52894:intron | 55.0% | |
| ATGTCGAAAGCGGCTTCCGA+AGG | + | chr6.1:21167133-21167152 | MS.gene52894:CDS | 55.0% | |
| CTCGATATACCGAACGCACG+CGG | + | chr6.1:21167094-21167113 | MS.gene52894:CDS | 55.0% | |
| TGTCTCAAGCAATCCACCCC+AGG | - | chr6.1:21165968-21165987 | None:intergenic | 55.0% | |
| !! | CTGCCATTGACTTGCGCCTT+CGG | - | chr6.1:21165167-21165186 | None:intergenic | 55.0% |
| !! | GTTCTGGTGGTAAAGGCACC+TGG | + | chr6.1:21165947-21165966 | MS.gene52894:CDS | 55.0% |
| !! | TCTGGTGGTAAAGGCACCTG+GGG | + | chr6.1:21165949-21165968 | MS.gene52894:CDS | 55.0% |
| !! | TGCCATTGACTTGCGCCTTC+GGG | - | chr6.1:21165166-21165185 | None:intergenic | 55.0% |
| ACTTGCGCCTTCGGGGATCT+TGG | - | chr6.1:21165158-21165177 | None:intergenic | 60.0% | |
| CGAAAGCGGCTTCCGAAGGT+TGG | + | chr6.1:21167137-21167156 | MS.gene52894:CDS | 60.0% | |
| CGATCCGCGATTGACAGCAC+TGG | + | chr6.1:21166178-21166197 | MS.gene52894:intron | 60.0% | |
| GGGGGTGGAAGTAGCAAACC+AGG | + | chr6.1:21167700-21167719 | MS.gene52894:CDS | 60.0% | |
| TTGAGATGTTGGGGTGGGGG+TGG | + | chr6.1:21167685-21167704 | MS.gene52894:CDS | 60.0% | |
| ! | ATCATCGAACGGCGTTGGGG+AGG | + | chr6.1:21166782-21166801 | MS.gene52894:CDS | 60.0% |
| ! | TCCCCGAAGGCGCAAGTCAA+TGG | + | chr6.1:21165161-21165180 | MS.gene52894:CDS | 60.0% |
| !! | GCCATTGACTTGCGCCTTCG+GGG | - | chr6.1:21165165-21165184 | None:intergenic | 60.0% |
| !! | GGTGGTAAAGGCACCTGGGG+TGG | + | chr6.1:21165952-21165971 | MS.gene52894:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 21165041 | 21168113 | 21165041 | ID=MS.gene52894 |
| chr6.1 | mRNA | 21165041 | 21168113 | 21165041 | ID=MS.gene52894.t1;Parent=MS.gene52894 |
| chr6.1 | exon | 21165041 | 21165248 | 21165041 | ID=MS.gene52894.t1.exon1;Parent=MS.gene52894.t1 |
| chr6.1 | CDS | 21165041 | 21165248 | 21165041 | ID=cds.MS.gene52894.t1;Parent=MS.gene52894.t1 |
| chr6.1 | exon | 21165944 | 21166038 | 21165944 | ID=MS.gene52894.t1.exon2;Parent=MS.gene52894.t1 |
| chr6.1 | CDS | 21165944 | 21166038 | 21165944 | ID=cds.MS.gene52894.t1;Parent=MS.gene52894.t1 |
| chr6.1 | exon | 21166290 | 21168113 | 21166290 | ID=MS.gene52894.t1.exon3;Parent=MS.gene52894.t1 |
| chr6.1 | CDS | 21166290 | 21168113 | 21166290 | ID=cds.MS.gene52894.t1;Parent=MS.gene52894.t1 |
| Gene Sequence |
| Protein sequence |
