AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52981

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52981.t1 MTR_1g075600 91.561 237 20 0 1 237 1 237 9.77e-154 427
MS.gene52981.t1 MTR_1g077360 86.667 225 30 0 1 225 1 225 3.34e-144 402
MS.gene52981.t1 MTR_5g055100 70.464 237 70 0 1 237 1 237 4.33e-122 347
MS.gene52981.t1 MTR_2g085280 69.068 236 73 0 1 236 1 236 6.33e-117 333
MS.gene52981.t1 MTR_2g085250 69.068 236 73 0 1 236 1 236 2.23e-116 332
MS.gene52981.t1 MTR_8g043650 66.667 237 79 0 1 237 1 237 1.69e-114 327
MS.gene52981.t1 MTR_1g105920 69.863 219 66 0 1 219 1 219 3.42e-110 317
MS.gene52981.t1 MTR_2g030740 69.198 237 73 0 1 237 1 237 3.54e-110 317
MS.gene52981.t1 MTR_1g012570 67.932 237 76 0 1 237 1 237 1.72e-108 312
MS.gene52981.t1 MTR_5g045560 68.000 225 72 0 1 225 1 225 2.73e-108 311
MS.gene52981.t1 MTR_5g053390 68.444 225 71 0 1 225 1 225 1.06e-107 310
MS.gene52981.t1 MTR_1g105910 65.778 225 77 0 1 225 1 225 2.38e-107 309
MS.gene52981.t1 MTR_3g052920 68.018 222 71 0 1 222 1 222 3.50e-104 301
MS.gene52981.t1 MTR_3g030770 64.681 235 65 3 1 225 1 227 6.89e-103 298
MS.gene52981.t1 MTR_1g108510 64.681 235 65 3 1 225 1 227 8.96e-103 297
MS.gene52981.t1 MTR_0121s0080 61.603 237 90 1 1 237 1 236 5.63e-102 296
MS.gene52981.t1 MTR_1g105905 63.182 220 81 0 18 237 1 220 9.08e-99 287
MS.gene52981.t1 MTR_2g093190 62.979 235 69 3 1 225 1 227 1.94e-97 284
MS.gene52981.t1 MTR_1g108580 61.712 222 75 2 1 220 1 214 9.66e-95 277
MS.gene52981.t1 MTR_3g052870 63.927 219 60 2 1 219 1 200 1.86e-92 271
MS.gene52981.t1 MTR_1g106070 68.681 182 57 0 1 182 1 182 4.72e-89 261
MS.gene52981.t1 MTR_7g062350 57.848 223 92 2 16 237 27 248 2.89e-84 251
MS.gene52981.t1 MTR_1g075570 77.528 178 26 1 18 195 1 164 2.23e-83 246
MS.gene52981.t1 MTR_0121s0100 69.767 129 39 0 1 129 1 129 1.06e-55 174
MS.gene52981.t1 MTR_3g030780 67.188 128 42 0 1 128 1 128 6.71e-54 170
MS.gene52981.t1 MTR_3g080940 51.923 156 75 0 9 164 9 164 6.80e-52 167
MS.gene52981.t1 MTR_3g067910 71.845 103 29 0 21 123 2 104 5.98e-48 154
MS.gene52981.t1 MTR_2g105290 37.278 169 96 2 5 170 8 169 2.80e-31 113
MS.gene52981.t1 MTR_8g086290 37.423 163 92 2 5 164 8 163 2.64e-30 111
MS.gene52981.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 1.03e-27 101
MS.gene52981.t1 MTR_7g028448 38.462 143 76 3 22 164 25 155 3.00e-26 100
MS.gene52981.t1 MTR_4g036915 38.462 143 76 3 22 164 25 155 3.00e-26 100
MS.gene52981.t1 MTR_1g108500 57.732 97 20 1 22 118 110 185 4.79e-26 103
MS.gene52981.t1 MTR_4g127140 37.430 179 92 5 5 170 8 179 1.57e-24 96.3
MS.gene52981.t1 MTR_3g067915 51.064 94 46 0 33 126 3 96 8.50e-24 92.0
MS.gene52981.t1 MTR_3g067870 66.176 68 23 0 16 83 83 150 7.56e-23 91.3
MS.gene52981.t1 MTR_1g047550 56.338 71 31 0 9 79 2 72 6.87e-22 89.4
MS.gene52981.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 4.67e-21 87.0
MS.gene52981.t1 MTR_4g131030 41.803 122 52 3 9 111 2 123 6.93e-21 87.4
MS.gene52981.t1 MTR_8g051580 41.228 114 62 1 9 122 2 110 2.93e-20 85.1
MS.gene52981.t1 MTR_1g054265 50.685 73 36 0 9 81 2 74 2.05e-19 82.4
MS.gene52981.t1 MTR_1g063160 50.685 73 36 0 9 81 2 74 4.71e-19 82.0
MS.gene52981.t1 MTR_8g046350 52.113 71 34 0 9 79 2 72 6.39e-19 81.3
MS.gene52981.t1 MTR_4g102530 51.389 72 35 0 10 81 3 74 3.33e-18 80.1
MS.gene52981.t1 MTR_4g093970 59.091 66 27 0 10 75 29 94 3.84e-18 80.9
MS.gene52981.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 9.54e-18 78.2
MS.gene52981.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 1.01e-17 79.3
MS.gene52981.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 1.91e-17 79.0
MS.gene52981.t1 MTR_8g033220 48.000 75 39 0 10 84 3 77 2.04e-17 78.6
MS.gene52981.t1 MTR_8g033220 48.000 75 39 0 10 84 3 77 2.04e-17 78.6
MS.gene52981.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 7.14e-17 75.5
MS.gene52981.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 8.99e-17 77.4
MS.gene52981.t1 MTR_1g101970 40.566 106 62 1 9 114 2 106 1.41e-16 75.5
MS.gene52981.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 2.07e-16 76.3
MS.gene52981.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.86e-16 75.5
MS.gene52981.t1 MTR_1g053070 51.471 68 33 0 9 76 2 69 4.59e-16 75.1
MS.gene52981.t1 MTR_7g075870 32.903 155 71 4 10 131 3 157 5.49e-16 74.3
MS.gene52981.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 6.57e-16 75.1
MS.gene52981.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 7.90e-16 74.7
MS.gene52981.t1 MTR_2g009890 47.887 71 37 0 9 79 2 72 9.85e-16 74.7
MS.gene52981.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.35e-15 73.6
MS.gene52981.t1 MTR_5g066180 45.588 68 37 0 9 76 2 69 1.36e-15 73.6
MS.gene52981.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.78e-15 73.6
MS.gene52981.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 1.80e-15 73.2
MS.gene52981.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 2.18e-15 73.2
MS.gene52981.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 3.71e-15 68.2
MS.gene52981.t1 MTR_5g021270 40.187 107 56 3 9 113 2 102 4.96e-15 72.0
MS.gene52981.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.58e-15 72.0
MS.gene52981.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 5.70e-15 72.4
MS.gene52981.t1 MTR_7g075870 32.692 156 71 5 10 131 3 158 6.84e-15 71.2
MS.gene52981.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 9.59e-15 70.5
MS.gene52981.t1 MTR_3g102570 42.857 105 57 3 9 112 2 104 1.22e-14 72.0
MS.gene52981.t1 MTR_4g084740 50.704 71 34 1 9 78 2 72 1.35e-14 72.4
MS.gene52981.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.46e-14 70.9
MS.gene52981.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.46e-14 70.9
MS.gene52981.t1 MTR_8g066260 32.192 146 69 4 9 124 2 147 2.21e-14 70.5
MS.gene52981.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 2.67e-14 67.4
MS.gene52981.t1 MTR_7g016630 43.056 72 40 1 9 79 2 73 2.74e-14 70.5
MS.gene52981.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 2.99e-14 68.9
MS.gene52981.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 4.57e-14 65.1
MS.gene52981.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 5.18e-14 69.7
MS.gene52981.t1 MTR_5g046790 50.877 57 28 0 9 65 2 58 5.51e-14 68.9
MS.gene52981.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 9.30e-14 68.9
MS.gene52981.t1 MTR_7g075850 48.571 70 34 1 9 76 2 71 9.38e-14 68.9
MS.gene52981.t1 MTR_8g022970 30.233 172 93 5 2 159 9 167 1.40e-13 67.4
MS.gene52981.t1 MTR_4g109810 50.877 57 28 0 9 65 2 58 2.04e-13 67.8
MS.gene52981.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 2.19e-13 67.8
MS.gene52981.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.37e-13 67.4
MS.gene52981.t1 MTR_4g093030 46.774 62 33 0 9 70 2 63 2.33e-12 63.5
MS.gene52981.t1 MTR_1g041615 35.514 107 56 2 20 126 17 110 2.69e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52981.t1 AT5G60440 47.619 189 92 3 5 190 3 187 1.53e-49 164
MS.gene52981.t1 AT1G01530 41.579 190 103 3 4 192 2 184 1.84e-39 137
MS.gene52981.t1 AT2G24840 47.239 163 79 3 9 167 63 222 1.59e-38 135
MS.gene52981.t1 AT4G36590 39.831 236 119 8 5 226 3 229 2.88e-38 134
MS.gene52981.t1 AT1G65360 37.931 232 115 9 5 223 3 218 3.06e-35 125
MS.gene52981.t1 AT3G04100 30.114 176 107 3 2 167 7 176 4.09e-25 98.6
MS.gene52981.t1 AT1G72350 34.483 174 80 5 9 182 43 182 9.22e-23 92.8
MS.gene52981.t1 AT2G34440 42.342 111 63 1 9 119 2 111 6.35e-22 89.4
MS.gene52981.t1 AT3G66656 37.815 119 70 1 9 123 2 120 6.76e-20 84.0
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 1.40e-19 82.8
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 1.40e-19 82.8
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 1.40e-19 82.8
MS.gene52981.t1 AT1G29962 28.571 175 119 3 5 173 4 178 1.42e-19 83.6
MS.gene52981.t1 AT5G62165 36.429 140 60 3 10 120 3 142 5.87e-19 80.9
MS.gene52981.t1 AT5G62165 36.429 140 60 3 10 120 3 142 5.87e-19 80.9
MS.gene52981.t1 AT5G62165 36.429 140 60 3 10 120 3 142 5.87e-19 80.9
MS.gene52981.t1 AT5G62165 36.429 140 60 3 10 120 3 142 5.87e-19 80.9
MS.gene52981.t1 AT5G62165 36.429 140 60 3 10 120 3 142 5.87e-19 80.9
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 5.91e-19 82.4
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 5.91e-19 82.4
MS.gene52981.t1 AT5G62165 36.364 143 62 3 10 123 3 145 5.91e-19 82.4
MS.gene52981.t1 AT5G62165 35.000 160 70 4 10 135 3 162 9.80e-19 81.6
MS.gene52981.t1 AT5G62165 35.000 160 70 4 10 135 3 162 9.80e-19 81.6
MS.gene52981.t1 AT5G51870 32.804 189 80 6 10 168 3 174 1.49e-18 81.3
MS.gene52981.t1 AT4G22950 33.333 180 102 6 10 181 3 172 2.85e-18 79.7
MS.gene52981.t1 AT2G45660 40.385 104 53 1 10 104 3 106 3.24e-18 79.0
MS.gene52981.t1 AT2G45660 40.385 104 53 1 10 104 3 106 5.25e-18 80.1
MS.gene52981.t1 AT5G51870 37.500 144 60 4 10 123 3 146 6.25e-18 79.7
MS.gene52981.t1 AT4G22950 35.366 164 96 5 10 169 3 160 6.25e-18 79.7
MS.gene52981.t1 AT4G22950 35.366 164 96 5 10 169 3 160 6.25e-18 79.7
MS.gene52981.t1 AT5G51870 37.500 144 60 4 10 123 13 156 6.81e-18 80.1
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 2 99 9.80e-18 79.3
MS.gene52981.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.02e-17 78.2
MS.gene52981.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.05e-17 79.7
MS.gene52981.t1 AT5G51860 31.579 190 89 4 10 169 3 181 1.10e-17 79.0
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 2 99 1.16e-17 79.3
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 3 100 1.21e-17 79.3
MS.gene52981.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.22e-17 78.2
MS.gene52981.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.28e-17 78.6
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 12 109 1.51e-17 79.3
MS.gene52981.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.57e-17 75.5
MS.gene52981.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.85e-17 77.4
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 28 125 2.88e-17 78.6
MS.gene52981.t1 AT5G51870 36.301 146 63 4 5 120 21 166 2.93e-17 77.4
MS.gene52981.t1 AT5G51870 36.879 141 59 4 10 120 3 143 3.05e-17 77.0
MS.gene52981.t1 AT5G51860 32.558 172 81 4 10 150 3 170 3.16e-17 77.4
MS.gene52981.t1 AT4G18960 43.810 105 54 2 2 101 11 115 5.09e-17 78.2
MS.gene52981.t1 AT1G28460 27.907 172 121 1 5 173 4 175 5.95e-17 76.3
MS.gene52981.t1 AT4G09960 43.878 98 50 2 9 101 97 194 6.80e-17 78.6
MS.gene52981.t1 AT3G57230 47.059 68 36 0 9 76 2 69 7.42e-17 75.1
MS.gene52981.t1 AT3G54340 42.342 111 57 4 9 114 2 110 1.00e-16 77.0
MS.gene52981.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.59e-16 76.3
MS.gene52981.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.59e-16 76.3
MS.gene52981.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.29e-16 75.9
MS.gene52981.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.29e-16 75.9
MS.gene52981.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.40e-16 76.6
MS.gene52981.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.48e-16 76.3
MS.gene52981.t1 AT1G28450 28.000 175 120 3 5 173 4 178 3.98e-16 74.3
MS.gene52981.t1 AT4G37940 48.529 68 35 0 9 76 2 69 4.51e-16 75.1
MS.gene52981.t1 AT2G42830 26.160 237 155 4 1 219 9 243 4.70e-16 75.1
MS.gene52981.t1 AT4G37940 48.529 68 35 0 9 76 2 69 4.71e-16 74.7
MS.gene52981.t1 AT4G37940 48.529 68 35 0 9 76 2 69 6.03e-16 73.6
MS.gene52981.t1 AT3G30260 32.192 146 69 5 9 124 2 147 6.38e-16 75.1
MS.gene52981.t1 AT2G42830 44.737 76 42 0 1 76 9 84 6.49e-16 75.1
MS.gene52981.t1 AT2G22630 48.529 68 35 0 9 76 2 69 7.24e-16 74.3
MS.gene52981.t1 AT2G22630 48.529 68 35 0 9 76 2 69 7.24e-16 74.3
MS.gene52981.t1 AT3G57390 50.000 68 34 0 9 76 2 69 7.69e-16 74.3
MS.gene52981.t1 AT3G58780 48.529 68 35 0 9 76 17 84 8.52e-16 74.7
MS.gene52981.t1 AT4G24540 50.000 68 34 0 9 76 2 69 9.41e-16 73.9
MS.gene52981.t1 AT3G58780 48.529 68 35 0 9 76 23 90 1.04e-15 74.3
MS.gene52981.t1 AT4G11880 47.436 78 38 2 10 86 3 78 1.21e-15 72.8
MS.gene52981.t1 AT4G11880 47.436 78 38 2 10 86 3 78 1.21e-15 72.8
MS.gene52981.t1 AT5G23260 52.000 75 34 1 5 77 14 88 1.32e-15 74.3
MS.gene52981.t1 AT5G23260 52.000 75 34 1 5 77 14 88 1.33e-15 74.3
MS.gene52981.t1 AT1G77980 52.113 71 33 1 9 78 2 72 1.45e-15 75.1
MS.gene52981.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.60e-15 73.9
MS.gene52981.t1 AT3G58780 45.333 75 41 0 2 76 10 84 1.69e-15 74.3
MS.gene52981.t1 AT1G22130 41.414 99 57 1 9 106 2 100 2.01e-15 74.7
MS.gene52981.t1 AT5G65050 34.884 129 69 3 9 124 2 128 2.24e-15 72.0
MS.gene52981.t1 AT4G11880 47.436 78 38 2 10 86 3 78 2.59e-15 72.8
MS.gene52981.t1 AT4G11880 47.436 78 38 2 10 86 3 78 2.59e-15 72.8
MS.gene52981.t1 AT5G65050 49.275 69 34 1 9 76 2 70 3.33e-15 71.6
MS.gene52981.t1 AT5G60910 49.315 73 33 1 9 77 2 74 3.74e-15 72.8
MS.gene52981.t1 AT5G23260 53.521 71 31 1 9 77 2 72 4.20e-15 72.8
MS.gene52981.t1 AT5G65050 34.532 139 67 4 9 124 2 139 4.24e-15 71.2
MS.gene52981.t1 AT5G23260 53.521 71 31 1 9 77 2 72 4.41e-15 72.4
MS.gene52981.t1 AT2G22540 50.000 68 29 1 9 76 2 64 5.22e-15 72.0
MS.gene52981.t1 AT5G65050 34.532 139 67 4 9 124 2 139 5.35e-15 71.2
MS.gene52981.t1 AT1G77950 47.887 71 36 1 9 78 2 72 6.20e-15 72.4
MS.gene52981.t1 AT1G77950 47.887 71 36 1 9 78 2 72 6.20e-15 72.4
MS.gene52981.t1 AT1G77950 47.887 71 36 1 9 78 2 72 6.20e-15 72.4
MS.gene52981.t1 AT1G77950 47.887 71 36 1 9 78 2 72 6.20e-15 72.4
MS.gene52981.t1 AT3G61120 50.000 68 34 0 9 76 2 69 8.68e-15 71.6
MS.gene52981.t1 AT1G47760 38.835 103 49 2 9 111 2 90 9.51e-15 70.5
MS.gene52981.t1 AT1G69120 31.757 148 83 4 9 155 2 132 1.14e-14 71.2
MS.gene52981.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.17e-14 71.6
MS.gene52981.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.34e-14 69.3
MS.gene52981.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.49e-14 71.2
MS.gene52981.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.71e-14 70.9
MS.gene52981.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.78e-14 71.2
MS.gene52981.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.80e-14 70.1
MS.gene52981.t1 AT1G17310 52.632 76 34 1 8 83 47 120 1.92e-14 70.5
MS.gene52981.t1 AT1G69120 31.757 148 83 4 9 155 2 132 1.94e-14 70.9
MS.gene52981.t1 AT2G14210 46.377 69 36 1 9 76 2 70 2.03e-14 70.5
MS.gene52981.t1 AT5G65070 33.557 149 86 4 9 152 2 142 2.42e-14 68.6
MS.gene52981.t1 AT1G17310 52.632 76 34 1 8 83 58 131 2.92e-14 70.1
MS.gene52981.t1 AT3G58780 29.775 178 90 4 9 164 17 181 3.79e-14 70.1
MS.gene52981.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.09e-14 68.9
MS.gene52981.t1 AT5G65070 43.478 69 38 1 9 76 2 70 4.63e-14 68.9
MS.gene52981.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.68e-14 68.9
MS.gene52981.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.00e-14 68.6
MS.gene52981.t1 AT2G03710 55.357 56 25 0 9 64 2 57 5.20e-14 68.6
MS.gene52981.t1 AT3G02310 46.377 69 36 1 9 76 2 70 7.45e-14 68.6
MS.gene52981.t1 AT3G02310 46.377 69 36 1 9 76 2 70 8.14e-14 69.3
MS.gene52981.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.01e-13 68.6
MS.gene52981.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.11e-13 68.9
MS.gene52981.t1 AT5G65080 31.724 145 78 3 1 124 1 145 1.12e-13 68.2
MS.gene52981.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.16e-13 68.6
MS.gene52981.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.19e-13 68.6
MS.gene52981.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.37e-13 68.6
MS.gene52981.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.39e-13 67.8
MS.gene52981.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.42e-13 68.6
MS.gene52981.t1 AT5G65080 30.822 146 79 3 1 124 1 146 2.20e-13 67.0
MS.gene52981.t1 AT3G58780 46.875 64 34 0 2 65 10 73 2.33e-13 68.2
MS.gene52981.t1 AT5G65070 46.667 60 32 0 9 68 2 61 6.95e-13 66.2
MS.gene52981.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.16e-12 65.5
MS.gene52981.t1 AT5G27130 48.148 81 37 3 5 81 10 89 1.66e-12 66.2
MS.gene52981.t1 AT5G49490 29.461 241 105 11 5 215 41 246 1.96e-11 62.8
MS.gene52981.t1 AT2G26320 40.541 74 42 1 5 76 14 87 3.40e-11 58.9
MS.gene52981.t1 AT1G46408 36.000 125 71 5 7 122 2 126 5.79e-11 61.2
MS.gene52981.t1 AT4G37435 48.214 56 29 0 9 64 2 57 6.54e-11 60.1
MS.gene52981.t1 AT1G77080 49.275 69 34 1 9 76 2 70 9.01e-11 59.3
MS.gene52981.t1 AT1G77080 49.275 69 34 1 9 76 2 70 9.01e-11 59.3

Find 54 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTAAGCTCGCGCAATT+TGG 0.231826 1.1:-56569293 None:intergenic
ATTGAAGCTTCTTGATGATT+TGG 0.278070 1.1:-56569592 None:intergenic
ATTGCAAGATCCCAATGTTT+TGG 0.301551 1.1:-56569249 None:intergenic
TTGTTTGGTTTCAACAATAT+AGG 0.376703 1.1:+56569658 MS.gene52981:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.378424 1.1:+56569121 MS.gene52981:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.1:+56569643 MS.gene52981:CDS
GACCTTATCCATCCCTTCAA+TGG 0.393032 1.1:-56569419 None:intergenic
TGTTGGTATGGTTGTAAGTC+AGG 0.400193 1.1:+56569498 MS.gene52981:CDS
TCTATGACCGTATAAACATC+TGG 0.408099 1.1:-56569202 None:intergenic
TGGCTACCCAGATGTTTATA+CGG 0.408391 1.1:+56569195 MS.gene52981:CDS
TGGTGGGCTTGTCCCATTGA+AGG 0.408921 1.1:+56569406 MS.gene52981:CDS
AGAAGAATGAGGCTCAGTTT+TGG 0.412014 1.1:+56569386 MS.gene52981:CDS
GATGGTGGACATGGTCCCTC+TGG 0.456482 1.1:+56569685 MS.gene52981:CDS
AAGCTTCTTGATGATTTGGC+TGG 0.457989 1.1:-56569588 None:intergenic
ACCTTATCCATCCCTTCAAT+GGG 0.468641 1.1:-56569418 None:intergenic
CATAGACCGTTATCTCTCTC+AGG 0.489608 1.1:+56569219 MS.gene52981:CDS
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.1:-56569640 None:intergenic
TGTATTCTCACCTAGTGATA+AGG 0.498147 1.1:+56569162 MS.gene52981:CDS
AGGTCCCACTCCAAAACATT+GGG 0.498441 1.1:+56569239 MS.gene52981:CDS
TCCCATTGAAGGGATGGATA+AGG 0.507796 1.1:+56569417 MS.gene52981:CDS
AGCAATATATGCACCACAAA+GGG 0.513172 1.1:-56569134 None:intergenic
CAGGTCCCACTCCAAAACAT+TGG 0.516889 1.1:+56569238 MS.gene52981:CDS
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.1:-56569639 None:intergenic
GGCTTGTCCCATTGAAGGGA+TGG 0.531760 1.1:+56569411 MS.gene52981:CDS
TTTGGTTTCAACAATATAGG+AGG 0.541850 1.1:+56569661 MS.gene52981:CDS
GGTGGGCTTGTCCCATTGAA+GGG 0.542115 1.1:+56569407 MS.gene52981:CDS
TGGGATCTTGCAATTCATTG+AGG 0.552047 1.1:+56569258 MS.gene52981:CDS
TTCAACAATATAGGAGGAGA+TGG 0.553417 1.1:+56569667 MS.gene52981:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.1:-56569652 None:intergenic
GTGGGACCTGAGAGAGATAA+CGG 0.559782 1.1:-56569225 None:intergenic
TGATTTGGCTGGTGCTCGAT+AGG 0.567200 1.1:-56569577 None:intergenic
ACTTTCTCGAAGCGTCGTAG+TGG 0.570157 1.1:+56569082 MS.gene52981:CDS
ATCATGTCGAGTGGAAAGAA+AGG 0.570415 1.1:+56569001 None:intergenic
ACTCAAATCAACGATGCACT+AGG 0.586796 1.1:+56569322 MS.gene52981:CDS
CGATTTATGCAAGAAGAATG+AGG 0.588461 1.1:+56569375 MS.gene52981:CDS
ATAGGGTTCTGACAAAATCC+AGG 0.592191 1.1:-56569622 None:intergenic
GTGCTCGATAGGCATGGTAG+AGG 0.592462 1.1:-56569566 None:intergenic
TGTGCTTCAATCATGTCGAG+TGG 0.596376 1.1:+56568992 None:intergenic
CTATGACCGTATAAACATCT+GGG 0.596633 1.1:-56569201 None:intergenic
AAACGAATTGCAGAACATGT+TGG 0.599135 1.1:+56569481 MS.gene52981:CDS
AATTGCAGAACATGTTGGTA+TGG 0.601458 1.1:+56569486 MS.gene52981:CDS
GTTGGTATGGTTGTAAGTCA+GGG 0.608714 1.1:+56569499 MS.gene52981:CDS
GCTCGCGCAATTTGGCGCTG+CGG 0.612951 1.1:-56569285 None:intergenic
ATAGGAGGAGATGGTGGACA+TGG 0.613263 1.1:+56569676 MS.gene52981:CDS
GGTTCTGACAAAATCCAGGC+GGG 0.613799 1.1:-56569618 None:intergenic
AACAATATAGGAGGAGATGG+TGG 0.621356 1.1:+56569670 MS.gene52981:CDS
AATGAAAACACCTTATCACT+AGG 0.625532 1.1:-56569172 None:intergenic
TGGCTGGTGCTCGATAGGCA+TGG 0.627452 1.1:-56569572 None:intergenic
TCGAGTGGAAAGAAAGGTCA+AGG 0.628900 1.1:+56569007 MS.gene52981:CDS
GAGCAATATATGCACCACAA+AGG 0.643897 1.1:-56569135 None:intergenic
TTGGTATGGTTGTAAGTCAG+GGG 0.657692 1.1:+56569500 MS.gene52981:CDS
TTGGATCAATAGAATCCAGA+GGG 0.672575 1.1:-56569700 None:intergenic
CTTGGATCAATAGAATCCAG+AGG 0.702259 1.1:-56569701 None:intergenic
GGGTTCTGACAAAATCCAGG+CGG 0.715161 1.1:-56569619 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGAAAAATGCTTTGT+TGG + chr1.1:56569450-56569469 MS.gene52981:CDS 20.0%
!!! CATTTTTCAATAATTGAAGT+TGG - chr1.1:56569444-56569463 None:intergenic 20.0%
!! TTGTTTGGTTTCAACAATAT+AGG + chr1.1:56569658-56569677 MS.gene52981:CDS 25.0%
AATGAAAACACCTTATCACT+AGG - chr1.1:56569175-56569194 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG - chr1.1:56569655-56569674 None:intergenic 30.0%
! ATTGAAGCTTCTTGATGATT+TGG - chr1.1:56569595-56569614 None:intergenic 30.0%
! TTTGGTTTCAACAATATAGG+AGG + chr1.1:56569661-56569680 MS.gene52981:CDS 30.0%
!! AGTGATAAGGTGTTTTCATT+TGG + chr1.1:56569175-56569194 MS.gene52981:CDS 30.0%
AAACGAATTGCAGAACATGT+TGG + chr1.1:56569481-56569500 MS.gene52981:CDS 35.0%
AACAAAAAACGGAAGGGTTT+GGG - chr1.1:56569533-56569552 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG - chr1.1:56569643-56569662 None:intergenic 35.0%
AATTGCAGAACATGTTGGTA+TGG + chr1.1:56569486-56569505 MS.gene52981:CDS 35.0%
ACAAATGAGGTTGCAACATA+GGG - chr1.1:56569642-56569661 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG - chr1.1:56569137-56569156 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG + chr1.1:56569643-56569662 MS.gene52981:CDS 35.0%
ATTGCCAACAAAAAACGGAA+GGG - chr1.1:56569539-56569558 None:intergenic 35.0%
CGATTTATGCAAGAAGAATG+AGG + chr1.1:56569375-56569394 MS.gene52981:CDS 35.0%
CTATGACCGTATAAACATCT+GGG - chr1.1:56569204-56569223 None:intergenic 35.0%
GAACCATTGCCAACAAAAAA+CGG - chr1.1:56569544-56569563 None:intergenic 35.0%
TCTATGACCGTATAAACATC+TGG - chr1.1:56569205-56569224 None:intergenic 35.0%
TGTATTCTCACCTAGTGATA+AGG + chr1.1:56569162-56569181 MS.gene52981:CDS 35.0%
TTCAACAATATAGGAGGAGA+TGG + chr1.1:56569667-56569686 MS.gene52981:CDS 35.0%
! ATTGCAAGATCCCAATGTTT+TGG - chr1.1:56569252-56569271 None:intergenic 35.0%
AACAATATAGGAGGAGATGG+TGG + chr1.1:56569670-56569689 MS.gene52981:CDS 40.0%
ACCTTATCCATCCCTTCAAT+GGG - chr1.1:56569421-56569440 None:intergenic 40.0%
ACTCAAATCAACGATGCACT+AGG + chr1.1:56569322-56569341 MS.gene52981:CDS 40.0%
CAACAAAAAACGGAAGGGTT+TGG - chr1.1:56569534-56569553 None:intergenic 40.0%
CATTGCCAACAAAAAACGGA+AGG - chr1.1:56569540-56569559 None:intergenic 40.0%
GAGCAATATATGCACCACAA+AGG - chr1.1:56569138-56569157 None:intergenic 40.0%
GTTGGTATGGTTGTAAGTCA+GGG + chr1.1:56569499-56569518 MS.gene52981:CDS 40.0%
TGGCTACCCAGATGTTTATA+CGG + chr1.1:56569195-56569214 MS.gene52981:CDS 40.0%
TGGGATCTTGCAATTCATTG+AGG + chr1.1:56569258-56569277 MS.gene52981:CDS 40.0%
TGTTGGTATGGTTGTAAGTC+AGG + chr1.1:56569498-56569517 MS.gene52981:CDS 40.0%
TTGGTATGGTTGTAAGTCAG+GGG + chr1.1:56569500-56569519 MS.gene52981:CDS 40.0%
! AAGCTTCTTGATGATTTGGC+TGG - chr1.1:56569591-56569610 None:intergenic 40.0%
! AGAAGAATGAGGCTCAGTTT+TGG + chr1.1:56569386-56569405 MS.gene52981:CDS 40.0%
! ATAGGGTTCTGACAAAATCC+AGG - chr1.1:56569625-56569644 None:intergenic 40.0%
!!! AAGATCCCAATGTTTTGGAG+TGG - chr1.1:56569247-56569266 None:intergenic 40.0%
!!! AGATCCCAATGTTTTGGAGT+GGG - chr1.1:56569246-56569265 None:intergenic 40.0%
!!! CAAACCCTTCCGTTTTTTGT+TGG + chr1.1:56569532-56569551 MS.gene52981:CDS 40.0%
!!! CTTCCGTTTTTTGTTGGCAA+TGG + chr1.1:56569538-56569557 MS.gene52981:CDS 40.0%
AAAAACGGAAGGGTTTGGGT+AGG - chr1.1:56569529-56569548 None:intergenic 45.0%
AGCATTAAGCTCGCGCAATT+TGG - chr1.1:56569296-56569315 None:intergenic 45.0%
AGGTCCCACTCCAAAACATT+GGG + chr1.1:56569239-56569258 MS.gene52981:CDS 45.0%
CATAGACCGTTATCTCTCTC+AGG + chr1.1:56569219-56569238 MS.gene52981:CDS 45.0%
GACCTTATCCATCCCTTCAA+TGG - chr1.1:56569422-56569441 None:intergenic 45.0%
TCCCATTGAAGGGATGGATA+AGG + chr1.1:56569417-56569436 MS.gene52981:CDS 45.0%
TCGAGTGGAAAGAAAGGTCA+AGG + chr1.1:56569007-56569026 MS.gene52981:CDS 45.0%
!! AGAATGAGGCTCAGTTTTGG+TGG + chr1.1:56569389-56569408 MS.gene52981:CDS 45.0%
!! GAATGAGGCTCAGTTTTGGT+GGG + chr1.1:56569390-56569409 MS.gene52981:CDS 45.0%
CAGGTCCCACTCCAAAACAT+TGG + chr1.1:56569238-56569257 MS.gene52981:CDS 50.0%
GTGGGACCTGAGAGAGATAA+CGG - chr1.1:56569228-56569247 None:intergenic 50.0%
! GAAGCTTCAATTTTCCCGCC+TGG + chr1.1:56569604-56569623 MS.gene52981:CDS 50.0%
! GGGTTCTGACAAAATCCAGG+CGG - chr1.1:56569622-56569641 None:intergenic 50.0%
! GGTTCTGACAAAATCCAGGC+GGG - chr1.1:56569621-56569640 None:intergenic 50.0%
! TGATTTGGCTGGTGCTCGAT+AGG - chr1.1:56569580-56569599 None:intergenic 50.0%
!! ACTTTCTCGAAGCGTCGTAG+TGG + chr1.1:56569082-56569101 MS.gene52981:CDS 50.0%
!! ATAGGAGGAGATGGTGGACA+TGG + chr1.1:56569676-56569695 MS.gene52981:CDS 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr1.1:56569121-56569140 MS.gene52981:CDS 55.0%
GGCTTGTCCCATTGAAGGGA+TGG + chr1.1:56569411-56569430 MS.gene52981:CDS 55.0%
GTGCTCGATAGGCATGGTAG+AGG - chr1.1:56569569-56569588 None:intergenic 55.0%
! GGTGGGCTTGTCCCATTGAA+GGG + chr1.1:56569407-56569426 MS.gene52981:CDS 55.0%
!! TGGTGGGCTTGTCCCATTGA+AGG + chr1.1:56569406-56569425 MS.gene52981:CDS 55.0%
TGGCTGGTGCTCGATAGGCA+TGG - chr1.1:56569575-56569594 None:intergenic 60.0%
!! GATGGTGGACATGGTCCCTC+TGG + chr1.1:56569685-56569704 MS.gene52981:CDS 60.0%
GCTCGCGCAATTTGGCGCTG+CGG - chr1.1:56569288-56569307 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 56569004 56569717 56569004 ID=MS.gene52981
chr1.1 mRNA 56569004 56569717 56569004 ID=MS.gene52981.t1;Parent=MS.gene52981
chr1.1 exon 56569004 56569717 56569004 ID=MS.gene52981.t1.exon1;Parent=MS.gene52981.t1
chr1.1 CDS 56569004 56569717 56569004 ID=cds.MS.gene52981.t1;Parent=MS.gene52981.t1
Gene Sequence

>MS.gene52981

ATGTCGAGTGGAAAGAAAGGTCAAGGTCGCAAAAAAATTGAGATGAAAAAAATGAGCAATGAGAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGACTCTTCAAGAAAGCGAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTAGTGATAAGGTGTTTTCATTTGGCTACCCAGATGTTTATACGGTCATAGACCGTTATCTCTCTCAGGTCCCACTCCAAAACATTGGGATCTTGCAATTCATTGAGGCTCACCGCAGCGCCAAATTGCGCGAGCTTAATGCTATGTTAACTCAAATCAACGATGCACTAGGCATCGAAAAGAAGCGCAAGAATGAGCTGATCGATTTATGCAAGAAGAATGAGGCTCAGTTTTGGTGGGCTTGTCCCATTGAAGGGATGGATAAGGTCCAACTTCAATTATTGAAAAATGCTTTGTTGGATCTTAAGAAACGAATTGCAGAACATGTTGGTATGGTTGTAAGTCAGGGGACTCCTACCCAAACCCTTCCGTTTTTTGTTGGCAATGGTTCGTCCTCTACCATGCCTATCGAGCACCAGCCAAATCATCAAGAAGCTTCAATTTTCCCGCCTGGATTTTGTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATAGGAGGAGATGGTGGACATGGTCCCTCTGGATTCTATTGA
Protein sequence

>MS.gene52981.t1

MSSGKKGQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPSDKVFSFGYPDVYTVIDRYLSQVPLQNIGILQFIEAHRSAKLRELNAMLTQINDALGIEKKRKNELIDLCKKNEAQFWWACPIEGMDKVQLQLLKNALLDLKKRIAEHVGMVVSQGTPTQTLPFFVGNGSSSTMPIEHQPNHQEASIFPPGFCQNPMLQPHLFGFNNIGGDGGHGPSGFY