Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53125.t1 | XP_003613965.2 | 98.9 | 276 | 3 | 0 | 12 | 287 | 81 | 356 | 2.00E-151 | 545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53125.t1 | G7JWQ1 | 98.9 | 276 | 3 | 0 | 12 | 287 | 137 | 412 | 1.5e-151 | 545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene53125 | 0.81591 | 7.25E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53125.t1 | MTR_5g043180 | 98.913 | 276 | 3 | 0 | 12 | 287 | 137 | 412 | 0.0 | 563 |
| MS.gene53125.t1 | MTR_1g049180 | 64.576 | 271 | 93 | 3 | 12 | 281 | 132 | 400 | 3.37e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53125.t1 | AT1G69380 | 70.213 | 282 | 72 | 3 | 12 | 287 | 97 | 372 | 1.34e-144 | 411 |
| MS.gene53125.t1 | AT5G13610 | 60.448 | 268 | 105 | 1 | 12 | 279 | 131 | 397 | 2.78e-112 | 330 |
Find 63 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGATGGCATTCGTTTAAT+TGG | 0.196185 | 5.4:+32332545 | MS.gene53125:CDS |
| CTCAAATATATGAGTATCTT+AGG | 0.204215 | 5.4:+32333285 | MS.gene53125:CDS |
| TTCTTGGAATGGTGCATTAT+TGG | 0.217816 | 5.4:+32334292 | MS.gene53125:CDS |
| GAACAGAAAGTCAGATTTCT+TGG | 0.227670 | 5.4:+32334276 | MS.gene53125:CDS |
| TGGGAAGGCTAACTCGAATT+TGG | 0.241914 | 5.4:+32333008 | MS.gene53125:CDS |
| CCGGTTCTGCAACTATAATT+TGG | 0.244788 | 5.4:+32331025 | MS.gene53125:CDS |
| CTGTCTCAGATTTGTGATTT+TGG | 0.250817 | 5.4:+32330915 | MS.gene53125:CDS |
| GATGGAGGTACCACATTTCT+TGG | 0.266781 | 5.4:-32330972 | None:intergenic |
| AGCAAGCAATTGTCGTTATA+TGG | 0.296169 | 5.4:+32332244 | MS.gene53125:CDS |
| ACGAATGCCATCGGTATCTA+AGG | 0.320276 | 5.4:-32332537 | None:intergenic |
| TGTGATTAGATTATGCAATA+AGG | 0.320648 | 5.4:+32332456 | MS.gene53125:intron |
| AGAAATCTGACTTTCTGTTC+TGG | 0.344074 | 5.4:-32334273 | None:intergenic |
| AGGCATTTGGTTCAGGGACC+TGG | 0.362965 | 5.4:+32332209 | MS.gene53125:intron |
| AGAAGCTGCTTCAGCTTGTT+GGG | 0.365312 | 5.4:+32332989 | MS.gene53125:CDS |
| GTGATTAGATTATGCAATAA+GGG | 0.372604 | 5.4:+32332457 | MS.gene53125:intron |
| CATTTCTTGGATTGTCAGCC+TGG | 0.375703 | 5.4:-32330959 | None:intergenic |
| TATATGGTTGTCTACCAGTA+TGG | 0.378266 | 5.4:+32332260 | MS.gene53125:CDS |
| CCAAATTATAGTTGCAGAAC+CGG | 0.379583 | 5.4:-32331025 | None:intergenic |
| TTCACTAATTACCAGGTTGA+TGG | 0.387861 | 5.4:+32332898 | MS.gene53125:intron |
| TGTTCTGTTTCTCTATGATT+CGG | 0.389770 | 5.4:+32330892 | None:intergenic |
| CATGCCTCTTAACTAGTTGC+AGG | 0.392402 | 5.4:-32332328 | None:intergenic |
| AAGAAGCTGCTTCAGCTTGT+TGG | 0.395271 | 5.4:+32332988 | MS.gene53125:CDS |
| AATCGTGGAATGGAGAAAAC+TGG | 0.409896 | 5.4:+32332946 | MS.gene53125:CDS |
| CGTTTAATTGGAAGTGTGCT+TGG | 0.418207 | 5.4:+32332557 | MS.gene53125:CDS |
| TATAAATTTGAAAGGCATCC+AGG | 0.419107 | 5.4:+32330941 | MS.gene53125:CDS |
| GGTTTAGTTGAAGAGTTTGC+AGG | 0.426785 | 5.4:+32332919 | MS.gene53125:CDS |
| TATACCTGCAACTAGTTAAG+AGG | 0.448002 | 5.4:+32332324 | MS.gene53125:CDS |
| CTTGCTTTCACATGAAATCC+AGG | 0.453293 | 5.4:-32332227 | None:intergenic |
| CTTTCAGAGATGAGGAAAGA+TGG | 0.463989 | 5.4:+32332362 | MS.gene53125:CDS |
| CCTCATCTCTGAAAGTAAAC+CGG | 0.464595 | 5.4:-32332354 | None:intergenic |
| TACGAAGTAGCACAACGCTT+TGG | 0.471108 | 5.4:+32333314 | MS.gene53125:CDS |
| TAATCAGGTCAGAAATTGCT+TGG | 0.473936 | 5.4:+32333246 | MS.gene53125:intron |
| TTTGATGCTGAGCGGGAAGA+TGG | 0.475329 | 5.4:-32330990 | None:intergenic |
| ATAAAACAGCAGATCCATAC+TGG | 0.475377 | 5.4:-32332274 | None:intergenic |
| GATTTCAGAACTATGTAGTC+AGG | 0.496478 | 5.4:-32332515 | None:intergenic |
| CAGGTCAGAAATTGCTTGGA+GGG | 0.506706 | 5.4:+32333250 | MS.gene53125:intron |
| TTTGGCAGTATAAATTTGAA+AGG | 0.515977 | 5.4:+32330933 | MS.gene53125:CDS |
| GCTGCTTCAGCTTGTTGGGA+AGG | 0.517396 | 5.4:+32332993 | MS.gene53125:CDS |
| AACATAGTTTGATGCTGAGC+GGG | 0.519045 | 5.4:-32330997 | None:intergenic |
| TCAAATATATGAGTATCTTA+GGG | 0.524156 | 5.4:+32333286 | MS.gene53125:CDS |
| GAAAGTCAGATTTCTTGGAA+TGG | 0.524943 | 5.4:+32334281 | MS.gene53125:CDS |
| GCTGACGTGATTCTTAAAGT+TGG | 0.531387 | 5.4:+32333030 | MS.gene53125:CDS |
| TTAAAGTTGGTCTCTTCGAA+AGG | 0.534432 | 5.4:+32333043 | MS.gene53125:CDS |
| CCGGTTTACTTTCAGAGATG+AGG | 0.537367 | 5.4:+32332354 | MS.gene53125:CDS |
| CTAGTTAAGAGGCATGCATC+CGG | 0.545551 | 5.4:+32332335 | MS.gene53125:CDS |
| AGCATATCCTCAACTAATTG+TGG | 0.545850 | 5.4:-32332485 | None:intergenic |
| CAATTAGTTGAGGATATGCT+AGG | 0.549462 | 5.4:+32332488 | MS.gene53125:CDS |
| TCCAATTAAACGAATGCCAT+CGG | 0.564529 | 5.4:-32332546 | None:intergenic |
| CATCAAACTATGTTGCTCTC+CGG | 0.579036 | 5.4:+32331006 | MS.gene53125:CDS |
| AATTAGTTGAGGATATGCTA+GGG | 0.584895 | 5.4:+32332489 | MS.gene53125:CDS |
| TCAGGTCAGAAATTGCTTGG+AGG | 0.607040 | 5.4:+32333249 | MS.gene53125:intron |
| TGCAGGCATAAATCGTGGAA+TGG | 0.610360 | 5.4:+32332936 | MS.gene53125:CDS |
| TAACATTGAGGATCATGAAG+TGG | 0.610969 | 5.4:+32332298 | MS.gene53125:CDS |
| CTGAAATCCTTAGATACCGA+TGG | 0.616992 | 5.4:+32332530 | MS.gene53125:CDS |
| GGAGAAGCCACAATTAGTTG+AGG | 0.630487 | 5.4:+32332478 | MS.gene53125:CDS |
| GGCTGACAATCCAAGAAATG+TGG | 0.640995 | 5.4:+32330962 | MS.gene53125:CDS |
| GAGTTTGCAGGCATAAATCG+TGG | 0.641288 | 5.4:+32332931 | MS.gene53125:CDS |
| GATGCTGAGCGGGAAGATGG+AGG | 0.643626 | 5.4:-32330987 | None:intergenic |
| TTACAAATTAAAATTCGTAG+AGG | 0.646264 | 5.4:+32333346 | MS.gene53125:CDS |
| AATATATGAGTATCTTAGGG+AGG | 0.663394 | 5.4:+32333289 | MS.gene53125:CDS |
| ATTAGTTGAGGATATGCTAG+GGG | 0.676107 | 5.4:+32332490 | MS.gene53125:CDS |
| CAACATAGTTTGATGCTGAG+CGG | 0.680057 | 5.4:-32330998 | None:intergenic |
| TTAGTTGAGGATATGCTAGG+GGG | 0.751678 | 5.4:+32332491 | MS.gene53125:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATAAATAATCTATTTAAA+TGG | - | chr5.4:32332149-32332168 | None:intergenic | 10.0% |
| !!! | AGATTTTTTACTTTAAAAAT+AGG | - | chr5.4:32331475-32331494 | None:intergenic | 10.0% |
| !! | AATAAAACACAATTTGATTA+AGG | - | chr5.4:32332023-32332042 | None:intergenic | 15.0% |
| !! | TGATTATGTTAATCTAATTA+CGG | + | chr5.4:32334193-32334212 | MS.gene53125:intron | 15.0% |
| !! | TTGAACTACTATTTATAATT+CGG | + | chr5.4:32334130-32334149 | MS.gene53125:intron | 15.0% |
| !!! | AACTTTTCTATTTCAAAAAT+AGG | - | chr5.4:32331843-32331862 | None:intergenic | 15.0% |
| !!! | ATATCTTTTTTATTTTCTTG+AGG | + | chr5.4:32333810-32333829 | MS.gene53125:intron | 15.0% |
| !!! | TATCTTTTTTATTTTCTTGA+GGG | + | chr5.4:32333811-32333830 | MS.gene53125:intron | 15.0% |
| !! | AAAATAGTAAATCTACATGT+GGG | + | chr5.4:32331444-32331463 | MS.gene53125:intron | 20.0% |
| !! | AATATGCAACAACTATAATT+GGG | + | chr5.4:32334079-32334098 | MS.gene53125:intron | 20.0% |
| !! | AATCATTGAAAATTTGACAT+TGG | + | chr5.4:32332873-32332892 | MS.gene53125:intron | 20.0% |
| !! | ACACTTTAATTAGATTAGAT+AGG | - | chr5.4:32333916-32333935 | None:intergenic | 20.0% |
| !! | ACATAGTTATTATGTATTTG+AGG | + | chr5.4:32334024-32334043 | MS.gene53125:intron | 20.0% |
| !! | AGCATAGTTTAAATATTGAA+AGG | - | chr5.4:32331911-32331930 | None:intergenic | 20.0% |
| !! | ATAATTAACCTATATCATAG+AGG | + | chr5.4:32331644-32331663 | MS.gene53125:intron | 20.0% |
| !! | ATATAATTAACATCATTTGC+TGG | + | chr5.4:32333623-32333642 | MS.gene53125:intron | 20.0% |
| !! | ATGATATAGGTTAATTATCT+CGG | - | chr5.4:32331642-32331661 | None:intergenic | 20.0% |
| !! | TAATATGCAACAACTATAAT+TGG | + | chr5.4:32334078-32334097 | MS.gene53125:intron | 20.0% |
| !! | TAATTAACCTATATCATAGA+GGG | + | chr5.4:32331645-32331664 | MS.gene53125:intron | 20.0% |
| !! | TATAATTAACATCATTTGCT+GGG | + | chr5.4:32333624-32333643 | MS.gene53125:intron | 20.0% |
| !! | TATTATTTCCATTACTTTGT+TGG | + | chr5.4:32332823-32332842 | MS.gene53125:intron | 20.0% |
| !! | TCAAATATATGAGTATCTTA+GGG | + | chr5.4:32333286-32333305 | MS.gene53125:CDS | 20.0% |
| !! | TTACAAATTAAAATTCGTAG+AGG | + | chr5.4:32333346-32333365 | MS.gene53125:CDS | 20.0% |
| !!! | AAAACTGTTTTTGTCTATTT+AGG | - | chr5.4:32333174-32333193 | None:intergenic | 20.0% |
| !!! | AAAGTTCTCTTTTTTTGTTT+TGG | - | chr5.4:32331775-32331794 | None:intergenic | 20.0% |
| !!! | ACAAAGTAATGGAAATAATA+TGG | - | chr5.4:32332823-32332842 | None:intergenic | 20.0% |
| !!! | ACCTTAAAATTCTCATTTTT+CGG | - | chr5.4:32331419-32331438 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTATTTTCTTGAG+GGG | + | chr5.4:32333812-32333831 | MS.gene53125:intron | 20.0% |
| !!! | CGAATTTTAATTTGTAATCT+AGG | - | chr5.4:32333343-32333362 | None:intergenic | 20.0% |
| ! | AAAAATAGCCAACAAAGTAA+TGG | - | chr5.4:32332834-32332853 | None:intergenic | 25.0% |
| ! | AGGAGAAACAGATAAAAAAT+GGG | - | chr5.4:32333382-32333401 | None:intergenic | 25.0% |
| ! | ATATCTACGAACTATTATCA+CGG | - | chr5.4:32331127-32331146 | None:intergenic | 25.0% |
| ! | ATATGCAACAACTATAATTG+GGG | + | chr5.4:32334080-32334099 | MS.gene53125:intron | 25.0% |
| ! | CTCAAATATATGAGTATCTT+AGG | + | chr5.4:32333285-32333304 | MS.gene53125:CDS | 25.0% |
| ! | GAAAATAGTAAATCTACATG+TGG | + | chr5.4:32331443-32331462 | MS.gene53125:intron | 25.0% |
| ! | GTGATTAGATTATGCAATAA+GGG | + | chr5.4:32332457-32332476 | MS.gene53125:intron | 25.0% |
| ! | TAAGAAAGTTCAGTTTATTG+TGG | + | chr5.4:32333221-32333240 | MS.gene53125:intron | 25.0% |
| ! | TGTGATTAGATTATGCAATA+AGG | + | chr5.4:32332456-32332475 | MS.gene53125:intron | 25.0% |
| ! | TTTATAGAGTCGTTTAATCA+TGG | + | chr5.4:32333191-32333210 | MS.gene53125:intron | 25.0% |
| ! | TTTGGCAGTATAAATTTGAA+AGG | + | chr5.4:32330933-32330952 | MS.gene53125:CDS | 25.0% |
| !! | ATAATTAACATCATTTGCTG+GGG | + | chr5.4:32333625-32333644 | MS.gene53125:intron | 25.0% |
| !! | GCTTCTATCTATTTTCTAAA+AGG | + | chr5.4:32332074-32332093 | MS.gene53125:intron | 25.0% |
| !! | GTAATGGAAATAATATGGAT+TGG | - | chr5.4:32332818-32332837 | None:intergenic | 25.0% |
| !!! | ACATGATTTGTTATTATAGC+TGG | - | chr5.4:32332397-32332416 | None:intergenic | 25.0% |
| !!! | ATCTTTTAGAATCTCGTATA+AGG | - | chr5.4:32334344-32334363 | None:intergenic | 25.0% |
| !!! | CAATGATTGCTTTTTTTTGT+TGG | - | chr5.4:32332861-32332880 | None:intergenic | 25.0% |
| !!! | TGCTGTTTTATTTAACATTG+AGG | + | chr5.4:32332286-32332305 | MS.gene53125:CDS | 25.0% |
| !!! | TTTTTATTTTCAACCCACTT+GGG | + | chr5.4:32333676-32333695 | MS.gene53125:intron | 25.0% |
| !!! | TTTTTTATTTTCAACCCACT+TGG | + | chr5.4:32333675-32333694 | MS.gene53125:intron | 25.0% |
| AAATCAAAATCTGCACTGAA+AGG | - | chr5.4:32332700-32332719 | None:intergenic | 30.0% | |
| AATAAACTCTGAACAACTTG+AGG | + | chr5.4:32332189-32332208 | MS.gene53125:intron | 30.0% | |
| AATATATGAGTATCTTAGGG+AGG | + | chr5.4:32333289-32333308 | MS.gene53125:CDS | 30.0% | |
| AATATGCCAAATGGCTTATT+TGG | + | chr5.4:32332619-32332638 | MS.gene53125:intron | 30.0% | |
| AATTAGTTGAGGATATGCTA+GGG | + | chr5.4:32332489-32332508 | MS.gene53125:CDS | 30.0% | |
| ACAAATCCAAATAAGCCATT+TGG | - | chr5.4:32332628-32332647 | None:intergenic | 30.0% | |
| ATTGAAAGGTTTACGTCTTA+CGG | - | chr5.4:32331529-32331548 | None:intergenic | 30.0% | |
| GAGGAGAAACAGATAAAAAA+TGG | - | chr5.4:32333383-32333402 | None:intergenic | 30.0% | |
| TATGCTGCAACAAATGATAA+GGG | - | chr5.4:32331946-32331965 | None:intergenic | 30.0% | |
| TCCATTCAAAACTTTGGTTA+AGG | - | chr5.4:32333990-32334009 | None:intergenic | 30.0% | |
| TTTCAAAAATAGGTCATGCT+TGG | - | chr5.4:32331833-32331852 | None:intergenic | 30.0% | |
| ! | ACATAGATTATCCCTGTTTT+AGG | + | chr5.4:32333092-32333111 | MS.gene53125:intron | 30.0% |
| ! | CAGTTTATTGTGGATTAATC+AGG | + | chr5.4:32333231-32333250 | MS.gene53125:intron | 30.0% |
| ! | GAAAACTGGAACTTTTACAA+TGG | + | chr5.4:32332960-32332979 | MS.gene53125:CDS | 30.0% |
| ! | GAAAGCATAGTTAGTAGTAA+CGG | - | chr5.4:32331552-32331571 | None:intergenic | 30.0% |
| ! | GCCGAAAAATGAGAATTTTA+AGG | + | chr5.4:32331415-32331434 | MS.gene53125:intron | 30.0% |
| ! | TACGGATTATCATGTTGATT+TGG | + | chr5.4:32334211-32334230 | MS.gene53125:intron | 30.0% |
| ! | TAGATTAGATAGGAGTACAA+GGG | - | chr5.4:32333906-32333925 | None:intergenic | 30.0% |
| ! | TATTAGGCAGGTTTTTAACA+GGG | + | chr5.4:32331248-32331267 | MS.gene53125:intron | 30.0% |
| ! | TTAGATTAGATAGGAGTACA+AGG | - | chr5.4:32333907-32333926 | None:intergenic | 30.0% |
| ! | TTATTAGGCAGGTTTTTAAC+AGG | + | chr5.4:32331247-32331266 | MS.gene53125:intron | 30.0% |
| !! | AAACAACCAAAGTTCTAGAA+TGG | - | chr5.4:32333520-32333539 | None:intergenic | 30.0% |
| !! | AGAACATTTTGTGGTTCTAT+CGG | + | chr5.4:32331085-32331104 | MS.gene53125:intron | 30.0% |
| !! | TATAAATTTGAAAGGCATCC+AGG | + | chr5.4:32330941-32330960 | MS.gene53125:CDS | 30.0% |
| !! | TCTAGATTATTTTGTCTCAC+AGG | + | chr5.4:32332592-32332611 | MS.gene53125:CDS | 30.0% |
| !! | TTGTTTTGTTATCGTGTATC+TGG | + | chr5.4:32333866-32333885 | MS.gene53125:intron | 30.0% |
| !!! | ACCTTAACCAAAGTTTTGAA+TGG | + | chr5.4:32333986-32334005 | MS.gene53125:intron | 30.0% |
| !!! | ATTGGTTTTCACTAATTACC+AGG | + | chr5.4:32332891-32332910 | MS.gene53125:intron | 30.0% |
| !!! | CTATCCTAGTTTTGCTATTA+GGG | + | chr5.4:32331697-32331716 | MS.gene53125:intron | 30.0% |
| !!! | GTTTTCTCTAGAACATTTTG+TGG | + | chr5.4:32331076-32331095 | MS.gene53125:intron | 30.0% |
| !!! | TAACCAAAGTTTTGAATGGA+GGG | + | chr5.4:32333990-32334009 | MS.gene53125:intron | 30.0% |
| !!! | TTAACCAAAGTTTTGAATGG+AGG | + | chr5.4:32333989-32334008 | MS.gene53125:intron | 30.0% |
| AAAATGACTAAGACGTGTAG+AGG | - | chr5.4:32333402-32333421 | None:intergenic | 35.0% | |
| AACGAACCAACTTAGCTATA+GGG | - | chr5.4:32331155-32331174 | None:intergenic | 35.0% | |
| AACTATGCTTTCCCATGTTT+GGG | + | chr5.4:32331560-32331579 | MS.gene53125:intron | 35.0% | |
| ACAAATGATAAGGGAAAGGA+AGG | - | chr5.4:32331937-32331956 | None:intergenic | 35.0% | |
| AGAAATCTGACTTTCTGTTC+TGG | - | chr5.4:32334276-32334295 | None:intergenic | 35.0% | |
| AGCAAGCAATTGTCGTTATA+TGG | + | chr5.4:32332244-32332263 | MS.gene53125:CDS | 35.0% | |
| AGCATATCCTCAACTAATTG+TGG | - | chr5.4:32332488-32332507 | None:intergenic | 35.0% | |
| ATAAAACAGCAGATCCATAC+TGG | - | chr5.4:32332277-32332296 | None:intergenic | 35.0% | |
| ATAATTCAGCTATGGCATAG+CGG | + | chr5.4:32331307-32331326 | MS.gene53125:intron | 35.0% | |
| ATCTATGTAACACCAACACT+AGG | - | chr5.4:32333080-32333099 | None:intergenic | 35.0% | |
| ATTAGTTGAGGATATGCTAG+GGG | + | chr5.4:32332490-32332509 | MS.gene53125:CDS | 35.0% | |
| CAAATGATAAGGGAAAGGAA+GGG | - | chr5.4:32331936-32331955 | None:intergenic | 35.0% | |
| CAATTAGTTGAGGATATGCT+AGG | + | chr5.4:32332488-32332507 | MS.gene53125:CDS | 35.0% | |
| CCAAATTATAGTTGCAGAAC+CGG | - | chr5.4:32331028-32331047 | None:intergenic | 35.0% | |
| CTAAACTAACCCACTCAAAT+TGG | - | chr5.4:32333776-32333795 | None:intergenic | 35.0% | |
| GAAAGTCAGATTTCTTGGAA+TGG | + | chr5.4:32334281-32334300 | MS.gene53125:CDS | 35.0% | |
| GAACAGAAAGTCAGATTTCT+TGG | + | chr5.4:32334276-32334295 | MS.gene53125:CDS | 35.0% | |
| GAGAACGCATAATACATAAG+AGG | - | chr5.4:32333839-32333858 | None:intergenic | 35.0% | |
| GATTTCAGAACTATGTAGTC+AGG | - | chr5.4:32332518-32332537 | None:intergenic | 35.0% | |
| GTATGCTGCAACAAATGATA+AGG | - | chr5.4:32331947-32331966 | None:intergenic | 35.0% | |
| GTCAAAACCCTCTATGATAT+AGG | - | chr5.4:32331655-32331674 | None:intergenic | 35.0% | |
| TAACATTGAGGATCATGAAG+TGG | + | chr5.4:32332298-32332317 | MS.gene53125:CDS | 35.0% | |
| TAACGAACCAACTTAGCTAT+AGG | - | chr5.4:32331156-32331175 | None:intergenic | 35.0% | |
| TAACTATGCTTTCCCATGTT+TGG | + | chr5.4:32331559-32331578 | MS.gene53125:intron | 35.0% | |
| TAATCAGGTCAGAAATTGCT+TGG | + | chr5.4:32333246-32333265 | MS.gene53125:intron | 35.0% | |
| TATACCTGCAACTAGTTAAG+AGG | + | chr5.4:32332324-32332343 | MS.gene53125:CDS | 35.0% | |
| TATATGGTTGTCTACCAGTA+TGG | + | chr5.4:32332260-32332279 | MS.gene53125:CDS | 35.0% | |
| TCCAATTAAACGAATGCCAT+CGG | - | chr5.4:32332549-32332568 | None:intergenic | 35.0% | |
| TCTATGTAACACCAACACTA+GGG | - | chr5.4:32333079-32333098 | None:intergenic | 35.0% | |
| TGCAACAAATGATAAGGGAA+AGG | - | chr5.4:32331941-32331960 | None:intergenic | 35.0% | |
| TGCCTAATAATCCCAAACAT+GGG | - | chr5.4:32331574-32331593 | None:intergenic | 35.0% | |
| TTCTTGGAATGGTGCATTAT+TGG | + | chr5.4:32334292-32334311 | MS.gene53125:CDS | 35.0% | |
| ! | AGATTAGATAGGAGTACAAG+GGG | - | chr5.4:32333905-32333924 | None:intergenic | 35.0% |
| ! | CTGTCTCAGATTTGTGATTT+TGG | + | chr5.4:32330915-32330934 | MS.gene53125:CDS | 35.0% |
| ! | GGGAGTATGAAGTAAAAAAC+TGG | - | chr5.4:32333496-32333515 | None:intergenic | 35.0% |
| ! | TTAAAGTTGGTCTCTTCGAA+AGG | + | chr5.4:32333043-32333062 | MS.gene53125:CDS | 35.0% |
| ! | TTATTAGGCAGGTTTTTGAC+TGG | + | chr5.4:32331584-32331603 | MS.gene53125:intron | 35.0% |
| ! | TTCACTAATTACCAGGTTGA+TGG | + | chr5.4:32332898-32332917 | MS.gene53125:intron | 35.0% |
| ! | TTCCCATGTTTGGGATTATT+AGG | + | chr5.4:32331569-32331588 | MS.gene53125:intron | 35.0% |
| ! | TTTTTCTCACGCCTAAAACA+GGG | - | chr5.4:32333106-32333125 | None:intergenic | 35.0% |
| !! | AACCAAAGTTCTAGAATGGA+GGG | - | chr5.4:32333516-32333535 | None:intergenic | 35.0% |
| !! | GATTATTTTGTCTCACAGGT+TGG | + | chr5.4:32332596-32332615 | MS.gene53125:intron | 35.0% |
| !! | GTTAGTAGTAACGGATTGAA+AGG | - | chr5.4:32331543-32331562 | None:intergenic | 35.0% |
| !! | TATTAGGCAGGTTTTTGACT+GGG | + | chr5.4:32331585-32331604 | MS.gene53125:intron | 35.0% |
| !!! | GCTATCCTAGTTTTGCTATT+AGG | + | chr5.4:32331696-32331715 | MS.gene53125:intron | 35.0% |
| !!! | TTTTTTCTCACGCCTAAAAC+AGG | - | chr5.4:32333107-32333126 | None:intergenic | 35.0% |
| AACATAGTTTGATGCTGAGC+GGG | - | chr5.4:32331000-32331019 | None:intergenic | 40.0% | |
| AAGTGCATGTTCTTCCATAG+AGG | - | chr5.4:32331209-32331228 | None:intergenic | 40.0% | |
| AATCGTGGAATGGAGAAAAC+TGG | + | chr5.4:32332946-32332965 | MS.gene53125:CDS | 40.0% | |
| AATGACCCTAATAGCGAAAC+TGG | - | chr5.4:32331356-32331375 | None:intergenic | 40.0% | |
| ACCGATGGCATTCGTTTAAT+TGG | + | chr5.4:32332545-32332564 | MS.gene53125:CDS | 40.0% | |
| ACGTCCCTAATAGCAAAACT+AGG | - | chr5.4:32331704-32331723 | None:intergenic | 40.0% | |
| ACTCCCTCCATTCAAAACTT+TGG | - | chr5.4:32333996-32334015 | None:intergenic | 40.0% | |
| AGCACCTGTGTTGTCAAATA+GGG | + | chr5.4:32331281-32331300 | MS.gene53125:intron | 40.0% | |
| ATGACCCTAATAGCGAAACT+GGG | - | chr5.4:32331355-32331374 | None:intergenic | 40.0% | |
| CAACATAGTTTGATGCTGAG+CGG | - | chr5.4:32331001-32331020 | None:intergenic | 40.0% | |
| CATCAAACTATGTTGCTCTC+CGG | + | chr5.4:32331006-32331025 | MS.gene53125:CDS | 40.0% | |
| CCGGTTCTGCAACTATAATT+TGG | + | chr5.4:32331025-32331044 | MS.gene53125:CDS | 40.0% | |
| CTATCCCAGTTTCGCTATTA+GGG | + | chr5.4:32331348-32331367 | MS.gene53125:intron | 40.0% | |
| CTATGTAACACCAACACTAG+GGG | - | chr5.4:32333078-32333097 | None:intergenic | 40.0% | |
| CTGAAATCCTTAGATACCGA+TGG | + | chr5.4:32332530-32332549 | MS.gene53125:CDS | 40.0% | |
| CTGCCTAATAATCCCAAACA+TGG | - | chr5.4:32331575-32331594 | None:intergenic | 40.0% | |
| CTTCAACTAAACCATCAACC+TGG | - | chr5.4:32332912-32332931 | None:intergenic | 40.0% | |
| CTTGCTTTCACATGAAATCC+AGG | - | chr5.4:32332230-32332249 | None:intergenic | 40.0% | |
| CTTTCAGAGATGAGGAAAGA+TGG | + | chr5.4:32332362-32332381 | MS.gene53125:CDS | 40.0% | |
| GAAATAGCGAGCTTGAAATC+TGG | + | chr5.4:32332731-32332750 | MS.gene53125:intron | 40.0% | |
| GCAACAACTATAATTGGGGA+AGG | + | chr5.4:32334084-32334103 | MS.gene53125:intron | 40.0% | |
| GCGCATCTAGATGAAAAATC+AGG | - | chr5.4:32333474-32333493 | None:intergenic | 40.0% | |
| GCTGACGTGATTCTTAAAGT+TGG | + | chr5.4:32333030-32333049 | MS.gene53125:CDS | 40.0% | |
| GGTTTAGTTGAAGAGTTTGC+AGG | + | chr5.4:32332919-32332938 | MS.gene53125:CDS | 40.0% | |
| GTATTATCATCCCCTAGTGT+TGG | + | chr5.4:32333065-32333084 | MS.gene53125:intron | 40.0% | |
| TAGGGGAGATAATTCAGCTA+TGG | + | chr5.4:32331299-32331318 | MS.gene53125:intron | 40.0% | |
| TCTCGGCTATTTGACAATGT+TGG | - | chr5.4:32331625-32331644 | None:intergenic | 40.0% | |
| TCTCTACCCTATAGCTAAGT+TGG | + | chr5.4:32331146-32331165 | MS.gene53125:intron | 40.0% | |
| TCTGGCAGAAACTAGAATAG+CGG | - | chr5.4:32331383-32331402 | None:intergenic | 40.0% | |
| TTAGTTGAGGATATGCTAGG+GGG | + | chr5.4:32332491-32332510 | MS.gene53125:CDS | 40.0% | |
| ! | AACTTGAGGCATTTGGTTCA+GGG | + | chr5.4:32332203-32332222 | MS.gene53125:intron | 40.0% |
| ! | ACAGGTTGGAATATGCCAAA+TGG | + | chr5.4:32332610-32332629 | MS.gene53125:intron | 40.0% |
| ! | CATGTTTGGGATTATTAGGC+AGG | + | chr5.4:32331573-32331592 | MS.gene53125:intron | 40.0% |
| ! | CCTCATCTCTGAAAGTAAAC+CGG | - | chr5.4:32332357-32332376 | None:intergenic | 40.0% |
| ! | CGTTTAATTGGAAGTGTGCT+TGG | + | chr5.4:32332557-32332576 | MS.gene53125:CDS | 40.0% |
| ! | TATTTTCAACCCACTTGGGT+TGG | + | chr5.4:32333680-32333699 | MS.gene53125:intron | 40.0% |
| ! | TCTGAACAACTTGAGGCATT+TGG | + | chr5.4:32332196-32332215 | MS.gene53125:intron | 40.0% |
| ! | TGTTTGTTGATGCTCCTCTA+TGG | + | chr5.4:32331192-32331211 | MS.gene53125:intron | 40.0% |
| !! | CAACCAAAGTTCTAGAATGG+AGG | - | chr5.4:32333517-32333536 | None:intergenic | 40.0% |
| !! | CATCATTTGCTGGGGTATTT+TGG | + | chr5.4:32333633-32333652 | MS.gene53125:intron | 40.0% |
| AAGAAGCTGCTTCAGCTTGT+TGG | + | chr5.4:32332988-32333007 | MS.gene53125:CDS | 45.0% | |
| AATAATCCCTATCCACTGCC+AGG | - | chr5.4:32331232-32331251 | None:intergenic | 45.0% | |
| ACGAATGCCATCGGTATCTA+AGG | - | chr5.4:32332540-32332559 | None:intergenic | 45.0% | |
| ATGGAAGAACATGCACTTCC+TGG | + | chr5.4:32331211-32331230 | MS.gene53125:intron | 45.0% | |
| CAGCACCTGTGTTGTCAAAT+AGG | + | chr5.4:32331280-32331299 | MS.gene53125:intron | 45.0% | |
| CAGGTCAGAAATTGCTTGGA+GGG | + | chr5.4:32333250-32333269 | MS.gene53125:intron | 45.0% | |
| CATGCCTCTTAACTAGTTGC+AGG | - | chr5.4:32332331-32332350 | None:intergenic | 45.0% | |
| CATTTCTTGGATTGTCAGCC+TGG | - | chr5.4:32330962-32330981 | None:intergenic | 45.0% | |
| CCGGTTTACTTTCAGAGATG+AGG | + | chr5.4:32332354-32332373 | MS.gene53125:CDS | 45.0% | |
| GAATCAAACCTGACACCTTG+AGG | - | chr5.4:32333744-32333763 | None:intergenic | 45.0% | |
| GAGTTTGCAGGCATAAATCG+TGG | + | chr5.4:32332931-32332950 | MS.gene53125:CDS | 45.0% | |
| GCACCTGTGTTGTCAAATAG+GGG | + | chr5.4:32331282-32331301 | MS.gene53125:intron | 45.0% | |
| GCTATCCCAGTTTCGCTATT+AGG | + | chr5.4:32331347-32331366 | MS.gene53125:intron | 45.0% | |
| GGAGAAGCCACAATTAGTTG+AGG | + | chr5.4:32332478-32332497 | MS.gene53125:CDS | 45.0% | |
| GGCAGTGGATAGGGATTATT+AGG | + | chr5.4:32331232-32331251 | MS.gene53125:intron | 45.0% | |
| GGCTGACAATCCAAGAAATG+TGG | + | chr5.4:32330962-32330981 | MS.gene53125:CDS | 45.0% | |
| GTCAACACATCATTGGTCGT+TGG | + | chr5.4:32332658-32332677 | MS.gene53125:intron | 45.0% | |
| GTGGATAGGGATTATTAGGC+AGG | + | chr5.4:32331236-32331255 | MS.gene53125:intron | 45.0% | |
| TACGAAGTAGCACAACGCTT+TGG | + | chr5.4:32333314-32333333 | MS.gene53125:CDS | 45.0% | |
| TCAGGTCAGAAATTGCTTGG+AGG | + | chr5.4:32333249-32333268 | MS.gene53125:intron | 45.0% | |
| TCCTGCAGTCAACACATCAT+TGG | + | chr5.4:32332651-32332670 | MS.gene53125:intron | 45.0% | |
| TCTCCCCTATTTGACAACAC+AGG | - | chr5.4:32331288-32331307 | None:intergenic | 45.0% | |
| TGCAGGCATAAATCGTGGAA+TGG | + | chr5.4:32332936-32332955 | MS.gene53125:CDS | 45.0% | |
| TGGGAAGGCTAACTCGAATT+TGG | + | chr5.4:32333008-32333027 | MS.gene53125:CDS | 45.0% | |
| ! | AGAAGCTGCTTCAGCTTGTT+GGG | + | chr5.4:32332989-32333008 | MS.gene53125:CDS | 45.0% |
| ! | AGATAGGAGTACAAGGGGTA+CGG | - | chr5.4:32333900-32333919 | None:intergenic | 45.0% |
| ! | CAACTTGAGGCATTTGGTTC+AGG | + | chr5.4:32332202-32332221 | MS.gene53125:intron | 45.0% |
| ! | CTAGTTAAGAGGCATGCATC+CGG | + | chr5.4:32332335-32332354 | MS.gene53125:CDS | 45.0% |
| ! | GGTTTTTAACAGGGTGGTAG+TGG | + | chr5.4:32331257-32331276 | MS.gene53125:intron | 45.0% |
| ! | TAGGCAGGTTTTTAACAGGG+TGG | + | chr5.4:32331251-32331270 | MS.gene53125:intron | 45.0% |
| !! | ACCAATGATGTGTTGACTGC+AGG | - | chr5.4:32332655-32332674 | None:intergenic | 45.0% |
| !! | CTCCCTCCATTCTAGAACTT+TGG | + | chr5.4:32333511-32333530 | MS.gene53125:intron | 45.0% |
| !! | GATGGAGGTACCACATTTCT+TGG | - | chr5.4:32330975-32330994 | None:intergenic | 45.0% |
| !! | ATTATATTTATGAATATATT+TGG | - | chr5.4:32333610-32333629 | None:intergenic | 5.0% |
| !! | TACATAAAAAAAAAAAAAAA+AGG | - | chr5.4:32331969-32331988 | None:intergenic | 5.0% |
| AACCCACTCAAATTGGCACC+AGG | - | chr5.4:32333769-32333788 | None:intergenic | 50.0% | |
| ACCCACTCAAATTGGCACCA+GGG | - | chr5.4:32333768-32333787 | None:intergenic | 50.0% | |
| ATTCAGCTATGGCATAGCGG+CGG | + | chr5.4:32331310-32331329 | MS.gene53125:intron | 50.0% | |
| GCTATTGCTGCTACATCTGC+TGG | - | chr5.4:32331750-32331769 | None:intergenic | 50.0% | |
| GTCGTTGGATCGAGATCAGA+TGG | + | chr5.4:32332673-32332692 | MS.gene53125:intron | 50.0% | |
| GTGTCAGGTTTGATTCTCCC+TGG | + | chr5.4:32333748-32333767 | MS.gene53125:intron | 50.0% | |
| TCAAACCTGACACCTTGAGG+AGG | - | chr5.4:32333741-32333760 | None:intergenic | 50.0% | |
| TCACGCAGTTAGCACATCAG+TGG | - | chr5.4:32332773-32332792 | None:intergenic | 50.0% | |
| TGCTATTAGGGACGTTGCAG+CGG | + | chr5.4:32331709-32331728 | MS.gene53125:intron | 50.0% | |
| TTTGATGCTGAGCGGGAAGA+TGG | - | chr5.4:32330993-32331012 | None:intergenic | 50.0% | |
| ! | GATAGGAGTACAAGGGGTAC+GGG | - | chr5.4:32333899-32333918 | None:intergenic | 50.0% |
| ! | TCCCTGGTGCCAATTTGAGT+GGG | + | chr5.4:32333764-32333783 | MS.gene53125:intron | 50.0% |
| !! | TAGGCAGGTTTTTGACTGGG+TGG | + | chr5.4:32331588-32331607 | MS.gene53125:intron | 50.0% |
| ACCACCAGACCAACCCAAGT+GGG | - | chr5.4:32333692-32333711 | None:intergenic | 55.0% | |
| CACATCAGTGGCGGTTGGAT+CGG | - | chr5.4:32332761-32332780 | None:intergenic | 55.0% | |
| CGCAGTTAGCACATCAGTGG+CGG | - | chr5.4:32332770-32332789 | None:intergenic | 55.0% | |
| GAACATGCACTTCCTGGCAG+TGG | + | chr5.4:32331217-32331236 | MS.gene53125:intron | 55.0% | |
| GCACTTCCTGGCAGTGGATA+GGG | + | chr5.4:32331223-32331242 | MS.gene53125:intron | 55.0% | |
| GTTAGCACATCAGTGGCGGT+TGG | - | chr5.4:32332766-32332785 | None:intergenic | 55.0% | |
| TGCACTTCCTGGCAGTGGAT+AGG | + | chr5.4:32331222-32331241 | MS.gene53125:intron | 55.0% | |
| TTCAGCTATGGCATAGCGGC+GGG | + | chr5.4:32331311-32331330 | MS.gene53125:intron | 55.0% | |
| TTCGGCGCTGCTACATCTTC+TGG | - | chr5.4:32331401-32331420 | None:intergenic | 55.0% | |
| TTGGAGTGTGCTCCTCCTCA+AGG | + | chr5.4:32333726-32333745 | MS.gene53125:intron | 55.0% | |
| ! | AGGCATTTGGTTCAGGGACC+TGG | + | chr5.4:32332209-32332228 | MS.gene53125:intron | 55.0% |
| ! | CTCCCTGGTGCCAATTTGAG+TGG | + | chr5.4:32333763-32333782 | MS.gene53125:intron | 55.0% |
| ! | TTGAGGAGGAGCACACTCCA+AGG | - | chr5.4:32333727-32333746 | None:intergenic | 55.0% |
| !! | GCTGCTTCAGCTTGTTGGGA+AGG | + | chr5.4:32332993-32333012 | MS.gene53125:CDS | 55.0% |
| !! | TCAACCCACTTGGGTTGGTC+TGG | + | chr5.4:32333685-32333704 | MS.gene53125:intron | 55.0% |
| !! | TGGTCTGGTGGTGTTGGCTT+GGG | + | chr5.4:32333700-32333719 | MS.gene53125:intron | 55.0% |
| !! | TTGGGTTGGTCTGGTGGTGT+TGG | + | chr5.4:32333694-32333713 | MS.gene53125:intron | 55.0% |
| !! | TTGGTCTGGTGGTGTTGGCT+TGG | + | chr5.4:32333699-32333718 | MS.gene53125:intron | 55.0% |
| CACCACCAGACCAACCCAAG+TGG | - | chr5.4:32333693-32333712 | None:intergenic | 60.0% | |
| GATGCTGAGCGGGAAGATGG+AGG | - | chr5.4:32330990-32331009 | None:intergenic | 60.0% | |
| ! | CTATGGCATAGCGGCGGGTT+TGG | + | chr5.4:32331316-32331335 | MS.gene53125:intron | 60.0% |
| ! | GTGCTCCTCCTCAAGGTGTC+AGG | + | chr5.4:32333733-32333752 | MS.gene53125:intron | 60.0% |
| !! | ACCCACTTGGGTTGGTCTGG+TGG | + | chr5.4:32333688-32333707 | MS.gene53125:intron | 60.0% |
| !! | GTGGTGTTGGCTTGGGACCT+TGG | + | chr5.4:32333707-32333726 | MS.gene53125:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 32330906 | 32334381 | 32330906 | ID=MS.gene53125 |
| chr5.4 | mRNA | 32330906 | 32334381 | 32330906 | ID=MS.gene53125.t1;Parent=MS.gene53125 |
| chr5.4 | exon | 32330906 | 32331055 | 32330906 | ID=MS.gene53125.t1.exon1;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32330906 | 32331055 | 32330906 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| chr5.4 | exon | 32332224 | 32332383 | 32332224 | ID=MS.gene53125.t1.exon2;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32332224 | 32332383 | 32332224 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| chr5.4 | exon | 32332465 | 32332613 | 32332465 | ID=MS.gene53125.t1.exon3;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32332465 | 32332613 | 32332465 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| chr5.4 | exon | 32332913 | 32333064 | 32332913 | ID=MS.gene53125.t1.exon4;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32332913 | 32333064 | 32332913 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| chr5.4 | exon | 32333253 | 32333367 | 32333253 | ID=MS.gene53125.t1.exon5;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32333253 | 32333367 | 32333253 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| chr5.4 | exon | 32334244 | 32334381 | 32334244 | ID=MS.gene53125.t1.exon6;Parent=MS.gene53125.t1 |
| chr5.4 | CDS | 32334244 | 32334381 | 32334244 | ID=cds.MS.gene53125.t1;Parent=MS.gene53125.t1 |
| Gene Sequence |
| Protein sequence |
