AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049254


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049254.t1 MTR_3g096680 100.000 217 0 0 1 217 1 217 4.09e-152 421
MS.gene049254.t1 MTR_3g096680 90.417 240 0 1 1 217 1 240 9.50e-147 408
MS.gene049254.t1 MTR_3g096680 100.000 136 0 0 1 136 1 136 4.61e-91 264
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049254.t1 AT5G09260 78.539 219 42 3 1 217 1 216 6.52e-117 332
MS.gene049254.t1 AT5G63880 74.091 220 53 2 1 217 1 219 5.34e-112 320
MS.gene049254.t1 AT5G63880 66.803 244 53 3 1 217 1 243 3.22e-106 306

Find 38 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAGATGAAGAGGAGATTT+TGG 0.201044 3.3:+80127146 MS.gene049254:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 3.3:+80126756 MS.gene049254:CDS
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 3.3:-80125487 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 3.3:-80126800 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 3.3:+80126822 MS.gene049254:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 3.3:-80128519 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 3.3:+80127164 MS.gene049254:CDS
GGTGCCTTGGTTGGAACATC+AGG 0.402386 3.3:-80128570 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 3.3:+80126274 MS.gene049254:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 3.3:+80127108 MS.gene049254:intron
CGATCTACGTCCGTTACCTT+AGG 0.414802 3.3:-80125443 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 3.3:-80128591 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 3.3:+80127109 MS.gene049254:intron
TTGCTCAACATTTATAAGCC+AGG 0.478759 3.3:-80126345 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 3.3:-80125486 None:intergenic
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 3.3:+80126760 MS.gene049254:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 3.3:+80128734 MS.gene049254:intron
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 3.3:-80128583 None:intergenic
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 3.3:+80126264 MS.gene049254:CDS
TGACAAGGTTGACGAAAAGT+TGG 0.521454 3.3:+80128542 MS.gene049254:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 3.3:+80125499 MS.gene049254:CDS
ATTATCAGCAGAAGATGAAG+AGG 0.529769 3.3:+80127137 MS.gene049254:CDS
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 3.3:-80128579 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 3.3:-80128750 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 3.3:+80126327 MS.gene049254:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 3.3:-80128528 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 3.3:+80127110 MS.gene049254:intron
TATATTCGTGAAGAAACCTA+AGG 0.587486 3.3:+80125427 MS.gene049254:CDS
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 3.3:+80126265 MS.gene049254:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 3.3:-80126288 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 3.3:+80126735 MS.gene049254:CDS
TCCTAGCACAGTTCCTGACA+AGG 0.608316 3.3:+80128527 MS.gene049254:CDS
GTTTGAGAACTTGGAAACCC+AGG 0.622553 3.3:+80127173 MS.gene049254:CDS
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 3.3:+80125433 MS.gene049254:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 3.3:-80128598 None:intergenic
CCTTCCTGATGTTCCAACCA+AGG 0.677701 3.3:+80128566 MS.gene049254:CDS
CCTTGGTTGGAACATCAGGA+AGG 0.680222 3.3:-80128566 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 3.3:+80128725 MS.gene049254:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATTTTATTTTCTT+TGG - chr3.3:80128681-80128700 None:intergenic 10.0%
!!! TTATTTTGAAATTTTTCAAT+CGG - chr3.3:80127658-80127677 None:intergenic 10.0%
!! AAATTAGGAATATGATATAA+AGG + chr3.3:80128398-80128417 MS.gene049254:intron 15.0%
!! AATAACAGATATGAAATTAA+GGG - chr3.3:80125540-80125559 None:intergenic 15.0%
!! ATTTATATTCATGTTAAAAG+AGG - chr3.3:80126660-80126679 None:intergenic 15.0%
!! TCAAGAATAGTAATAAATAT+CGG + chr3.3:80125834-80125853 MS.gene049254:intron 15.0%
!! TTTATATTCATGTTAAAAGA+GGG - chr3.3:80126659-80126678 None:intergenic 15.0%
!! TTTCTGATAATTACTTATTA+GGG + chr3.3:80125584-80125603 MS.gene049254:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG - chr3.3:80125914-80125933 None:intergenic 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG - chr3.3:80127602-80127621 None:intergenic 15.0%
!!! TAATATAGTGTTTTAGATTT+TGG + chr3.3:80126114-80126133 MS.gene049254:intron 15.0%
!!! TTTTCTGATAATTACTTATT+AGG + chr3.3:80125583-80125602 MS.gene049254:intron 15.0%
!! AAACATTGAATTCAATTGTT+TGG + chr3.3:80128315-80128334 MS.gene049254:intron 20.0%
!! AACCTTTAGATTAAAATAGA+TGG + chr3.3:80127342-80127361 MS.gene049254:intron 20.0%
!! ATGGACTTATATGTATAAAT+AGG + chr3.3:80125720-80125739 MS.gene049254:intron 20.0%
!! GAATAACAGATATGAAATTA+AGG - chr3.3:80125541-80125560 None:intergenic 20.0%
!! GAGGTTATAAATTCAAAATT+AGG + chr3.3:80128383-80128402 MS.gene049254:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG + chr3.3:80127686-80127705 MS.gene049254:intron 20.0%
!! TAACAATGAAAATAAAGATC+CGG - chr3.3:80127494-80127513 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG + chr3.3:80127571-80127590 MS.gene049254:intron 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG - chr3.3:80127716-80127735 None:intergenic 20.0%
!! TTTAATCATAGTATATGGAA+AGG + chr3.3:80127273-80127292 MS.gene049254:intron 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG + chr3.3:80126415-80126434 MS.gene049254:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG + chr3.3:80128615-80128634 MS.gene049254:CDS 20.0%
!!! GATACTTACATTTATTTTGT+TGG + chr3.3:80126696-80126715 MS.gene049254:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG - chr3.3:80126690-80126709 None:intergenic 20.0%
! AACATTAAAACAAGATGAAG+GGG + chr3.3:80127572-80127591 MS.gene049254:intron 25.0%
! AAGGAAATTAATGCAATACT+TGG + chr3.3:80127108-80127127 MS.gene049254:intron 25.0%
! AATGTTTATCTCACTTTGTA+TGG - chr3.3:80126803-80126822 None:intergenic 25.0%
! ACCATCAGATCAAAAATAAA+CGG - chr3.3:80127985-80128004 None:intergenic 25.0%
! AGGAAATTAATGCAATACTT+GGG + chr3.3:80127109-80127128 MS.gene049254:intron 25.0%
! ATCATAAAAAGACGTTGTTT+AGG + chr3.3:80127808-80127827 MS.gene049254:intron 25.0%
! ATGACATCTAGCATAAAAAA+TGG + chr3.3:80128239-80128258 MS.gene049254:intron 25.0%
! ATTGAATTCAATGTTTCGAT+TGG - chr3.3:80128311-80128330 None:intergenic 25.0%
! ATTGTAAAAATAGTGCAACT+AGG + chr3.3:80127609-80127628 MS.gene049254:intron 25.0%
! GTAACATTAAAACAAGATGA+AGG + chr3.3:80127570-80127589 MS.gene049254:intron 25.0%
! TGAACAATTGAACTAAAGTT+TGG + chr3.3:80125618-80125637 MS.gene049254:intron 25.0%
! TTATGATTGAGATGTGAATT+GGG - chr3.3:80127795-80127814 None:intergenic 25.0%
! TTTATGATTGAGATGTGAAT+TGG - chr3.3:80127796-80127815 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAA+AGG - chr3.3:80127403-80127422 None:intergenic 25.0%
!! ATTGAGATTTTTGTTCTGTT+GGG + chr3.3:80127004-80127023 MS.gene049254:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG + chr3.3:80127729-80127748 MS.gene049254:intron 25.0%
!! TATGAATGGATTTATAAGTC+AGG - chr3.3:80127230-80127249 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG - chr3.3:80127347-80127366 None:intergenic 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG + chr3.3:80126090-80126109 MS.gene049254:intron 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG + chr3.3:80127089-80127108 MS.gene049254:intron 25.0%
!!! GAAATTAAGGGTATTGAAAA+AGG - chr3.3:80125528-80125547 None:intergenic 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG + chr3.3:80126420-80126439 MS.gene049254:intron 25.0%
AACAACAGTAATCAATACAG+TGG - chr3.3:80125747-80125766 None:intergenic 30.0%
AAGTTCAATGAATCTAGATG+TGG - chr3.3:80126933-80126952 None:intergenic 30.0%
AGAGAGTGAGTCATTATTAT+TGG - chr3.3:80126447-80126466 None:intergenic 30.0%
CATGCAATAAGAATTTATGG+GGG - chr3.3:80128449-80128468 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG - chr3.3:80128450-80128469 None:intergenic 30.0%
CTAAATTTCCTCTATGCTAT+AGG - chr3.3:80125866-80125885 None:intergenic 30.0%
GAAAGGAAAAAACTCAAGTA+AGG - chr3.3:80126179-80126198 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG - chr3.3:80128451-80128470 None:intergenic 30.0%
GGAAAATAAAGAACACAGAA+AGG - chr3.3:80126196-80126215 None:intergenic 30.0%
GGAAATTAATGCAATACTTG+GGG + chr3.3:80127110-80127129 MS.gene049254:intron 30.0%
TACCTGTTTGTATCTTTCTA+TGG + chr3.3:80126466-80126485 MS.gene049254:intron 30.0%
TATAGAAGTTGACTAACTGA+TGG + chr3.3:80128701-80128720 MS.gene049254:intron 30.0%
TATATTCGTGAAGAAACCTA+AGG + chr3.3:80125427-80125446 MS.gene049254:CDS 30.0%
TATGATTGAGATGTGAATTG+GGG - chr3.3:80127794-80127813 None:intergenic 30.0%
TCGTGAAAAGAAGAAAGATA+GGG + chr3.3:80126265-80126284 MS.gene049254:CDS 30.0%
TGAAGATGTTCAGAAACTTA+TGG + chr3.3:80126822-80126841 MS.gene049254:CDS 30.0%
TGCCATGCAATAAGAATTTA+TGG - chr3.3:80128452-80128471 None:intergenic 30.0%
TGTTCAGAAGAGATAATTGA+GGG + chr3.3:80126624-80126643 MS.gene049254:intron 30.0%
TGTTGGGCTGTTAATATATT+TGG + chr3.3:80127020-80127039 MS.gene049254:intron 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG + chr3.3:80126264-80126283 MS.gene049254:CDS 30.0%
! AATGGAGGTTCTTTATTTGT+GGG + chr3.3:80128161-80128180 MS.gene049254:intron 30.0%
! CACTACTTCTCATTTTCATA+TGG + chr3.3:80125701-80125720 MS.gene049254:intron 30.0%
! GATTGAGATTTTTGTTCTGT+TGG + chr3.3:80127003-80127022 MS.gene049254:intron 30.0%
! TAATGGAGGTTCTTTATTTG+TGG + chr3.3:80128160-80128179 MS.gene049254:intron 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG - chr3.3:80127415-80127434 None:intergenic 30.0%
!! CTGGCTTTAATCATAGTATA+TGG + chr3.3:80127268-80127287 MS.gene049254:intron 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG - chr3.3:80127414-80127433 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG - chr3.3:80128672-80128691 None:intergenic 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG + chr3.3:80126089-80126108 MS.gene049254:intron 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG - chr3.3:80128673-80128692 None:intergenic 30.0%
AAAGATCCGGTCATTAACAT+TGG - chr3.3:80127481-80127500 None:intergenic 35.0%
AAAGCTGCAGAAAATCTGAA+TGG + chr3.3:80127899-80127918 MS.gene049254:intron 35.0%
AACATTGCTTAGAGAAGAGA+TGG - chr3.3:80128342-80128361 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG - chr3.3:80127194-80127213 None:intergenic 35.0%
AAGCTGCAGAAAATCTGAAT+GGG + chr3.3:80127900-80127919 MS.gene049254:intron 35.0%
ACACCAGATACAATCAAAGA+CGG - chr3.3:80126034-80126053 None:intergenic 35.0%
ACAGCTGGAACAAATATGAA+TGG - chr3.3:80127244-80127263 None:intergenic 35.0%
ACATTGCTTAGAGAAGAGAT+GGG - chr3.3:80128341-80128360 None:intergenic 35.0%
ACTCATACCACAAGTAACTT+GGG - chr3.3:80128219-80128238 None:intergenic 35.0%
ACTGAAAAATCCATGTACCT+GGG - chr3.3:80127193-80127212 None:intergenic 35.0%
ACTTGCTCAGTATCAACAAA+AGG + chr3.3:80125499-80125518 MS.gene049254:CDS 35.0%
AGCCATAGAAAGATACAAAC+AGG - chr3.3:80126471-80126490 None:intergenic 35.0%
ATCTCTTCTGAACAGGATAT+CGG - chr3.3:80126618-80126637 None:intergenic 35.0%
ATTATCAGCAGAAGATGAAG+AGG + chr3.3:80127137-80127156 MS.gene049254:CDS 35.0%
CAATAAGAATTTATGGGGGA+AGG - chr3.3:80128445-80128464 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG + chr3.3:80128447-80128466 MS.gene049254:intron 35.0%
CTCAATTATCTCTTCTGAAC+AGG - chr3.3:80126625-80126644 None:intergenic 35.0%
CTGTTCAGAAGAGATAATTG+AGG + chr3.3:80126623-80126642 MS.gene049254:intron 35.0%
CTTTGATTGTATCTGGTGTA+TGG + chr3.3:80126035-80126054 MS.gene049254:intron 35.0%
TACCTGTTAGCATCTTTCTA+TGG + chr3.3:80126546-80126565 MS.gene049254:intron 35.0%
TACTCATACCACAAGTAACT+TGG - chr3.3:80128220-80128239 None:intergenic 35.0%
TATCAGCCGAGACTAATTAA+TGG + chr3.3:80128143-80128162 MS.gene049254:intron 35.0%
TGCTAACAGGTAGAGATTAT+CGG - chr3.3:80126538-80126557 None:intergenic 35.0%
TGTATGGAAAATGAATCAGC+TGG + chr3.3:80126051-80126070 MS.gene049254:intron 35.0%
TTGCTCAACATTTATAAGCC+AGG - chr3.3:80126348-80126367 None:intergenic 35.0%
TTTCTTCTTTAACGCCAACA+AGG - chr3.3:80126291-80126310 None:intergenic 35.0%
! AACTTGAGTGTACCTTTTTG+GGG + chr3.3:80126948-80126967 MS.gene049254:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG + chr3.3:80127062-80127081 MS.gene049254:intron 35.0%
! AGAAGATGAAGAGGAGATTT+TGG + chr3.3:80127146-80127165 MS.gene049254:CDS 35.0%
! GAACCTCCATTAATTAGTCT+CGG - chr3.3:80128152-80128171 None:intergenic 35.0%
! GAACTTGAGTGTACCTTTTT+GGG + chr3.3:80126947-80126966 MS.gene049254:intron 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG + chr3.3:80126756-80126775 MS.gene049254:CDS 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG + chr3.3:80126760-80126779 MS.gene049254:CDS 35.0%
! TAGCTCAGTGTTGTTAATCT+CGG - chr3.3:80126003-80126022 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG + chr3.3:80126946-80126965 MS.gene049254:intron 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG - chr3.3:80126854-80126873 None:intergenic 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG + chr3.3:80127981-80128000 MS.gene049254:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG + chr3.3:80126078-80126097 MS.gene049254:intron 35.0%
AAAATGAATCAGCTGGACGT+TGG + chr3.3:80126058-80126077 MS.gene049254:intron 40.0%
AACAGTTATGGAGGAACCAT+TGG + chr3.3:80128734-80128753 MS.gene049254:intron 40.0%
ACAGGTAGAGATTATCGGAA+AGG - chr3.3:80126533-80126552 None:intergenic 40.0%
ACTCAATGGCTCAATAGACA+AGG - chr3.3:80126584-80126603 None:intergenic 40.0%
AGACCGTCTTTGATTGTATC+TGG + chr3.3:80126028-80126047 MS.gene049254:intron 40.0%
AGCCATAGAAAGATGCTAAC+AGG - chr3.3:80126551-80126570 None:intergenic 40.0%
ATAGACTAAGTGAGGCACAT+GGG + chr3.3:80127931-80127950 MS.gene049254:intron 40.0%
ATTAAAGCCAGTAGTACAGC+TGG - chr3.3:80127259-80127278 None:intergenic 40.0%
ATTTGTTCCAGCTGTACTAC+TGG + chr3.3:80127249-80127268 MS.gene049254:intron 40.0%
CAGGTAGAGATTATCGGAAA+GGG - chr3.3:80126532-80126551 None:intergenic 40.0%
CGGAAAGGGAAAATACTCAA+TGG - chr3.3:80126598-80126617 None:intergenic 40.0%
CGTGAAGAAACCTAAGGTAA+CGG + chr3.3:80125433-80125452 MS.gene049254:CDS 40.0%
CTTCAATAACAGCATCAAGC+TGG - chr3.3:80126217-80126236 None:intergenic 40.0%
GAAAATCTGAATGGGTATGG+TGG + chr3.3:80127908-80127927 MS.gene049254:intron 40.0%
GAGCTAGTGATTGACTATAG+AGG + chr3.3:80128364-80128383 MS.gene049254:intron 40.0%
GCAGAAAATCTGAATGGGTA+TGG + chr3.3:80127905-80127924 MS.gene049254:intron 40.0%
GGCATATCGTAGAACAATAG+AGG - chr3.3:80125893-80125912 None:intergenic 40.0%
TACCACAAGTAACTTGGGTT+CGG - chr3.3:80128214-80128233 None:intergenic 40.0%
TCTATGCTACAGTGCTATAG+CGG - chr3.3:80125948-80125967 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG - chr3.3:80126612-80126631 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG + chr3.3:80128542-80128561 MS.gene049254:CDS 40.0%
TGATGTTGCAACAGTTATGG+AGG + chr3.3:80128725-80128744 MS.gene049254:intron 40.0%
TTCTGAACAGGATATCGGAA+AGG - chr3.3:80126613-80126632 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG - chr3.3:80126902-80126921 None:intergenic 40.0%
TTTGACGTGCACAATGAGAA+TGG - chr3.3:80125563-80125582 None:intergenic 40.0%
TTTGGCAGAGTTTGAGAACT+TGG + chr3.3:80127164-80127183 MS.gene049254:CDS 40.0%
! AACTTTTCGTCAACCTTGTC+AGG - chr3.3:80128543-80128562 None:intergenic 40.0%
! ACTTGAGTGTACCTTTTTGG+GGG + chr3.3:80126949-80126968 MS.gene049254:intron 40.0%
! TATTGAAGCAAGTTGACACC+TGG + chr3.3:80126327-80126346 MS.gene049254:CDS 40.0%
!! GTTAGGCATTGAAGTTGTAC+TGG + chr3.3:80126977-80126996 MS.gene049254:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG + chr3.3:80127923-80127942 MS.gene049254:intron 40.0%
AACTTGGAAACCCAGGTACA+TGG + chr3.3:80127180-80127199 MS.gene049254:intron 45.0%
CAGCCGAGACTAATTAATGG+AGG + chr3.3:80128146-80128165 MS.gene049254:intron 45.0%
CCACCACCAATGTTAATGAC+CGG + chr3.3:80127472-80127491 MS.gene049254:intron 45.0%
CTATAGAGAGAGAGAGAGAG+AGG - chr3.3:80128094-80128075 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG + chr3.3:80127930-80127949 MS.gene049254:intron 45.0%
GATCCGGTCATTAACATTGG+TGG - chr3.3:80127478-80127497 None:intergenic 45.0%
GATCTTCGACTGCAAACTGT+TGG - chr3.3:80128497-80128516 None:intergenic 45.0%
GCTATAGCACTGTAGCATAG+AGG + chr3.3:80125947-80125966 MS.gene049254:intron 45.0%
GGCTATAGCCTATAGCATAG+AGG + chr3.3:80125855-80125874 MS.gene049254:intron 45.0%
GGCTGATGTTGCAACAGTTA+TGG + chr3.3:80128722-80128741 MS.gene049254:intron 45.0%
GTTTGAGAACTTGGAAACCC+AGG + chr3.3:80127173-80127192 MS.gene049254:CDS 45.0%
TACTTCAGCATCACTCGTAG+TGG - chr3.3:80128601-80128620 None:intergenic 45.0%
TGAAAATGGGGGAGTGGAAT+TGG - chr3.3:80127448-80127467 None:intergenic 45.0%
TGAACTGACAAGCAAGCAGA+AGG + chr3.3:80126735-80126754 MS.gene049254:CDS 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG + chr3.3:80126274-80126293 MS.gene049254:CDS 45.0%
! GTGTCATTCCTCTAGCAACA+AGG - chr3.3:80128119-80128138 None:intergenic 45.0%
!! CGGAAAGGGAAAGTACTCAA+TGG - chr3.3:80126518-80126537 None:intergenic 45.0%
!! GTCATTAACATTGGTGGTGG+TGG - chr3.3:80127472-80127491 None:intergenic 45.0%
!! TGGTGGTGGTGGTTGAAAAT+GGG - chr3.3:80127461-80127480 None:intergenic 45.0%
!! TTGGTGGTGGTGGTTGAAAA+TGG - chr3.3:80127462-80127481 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG - chr3.3:80128668-80128687 None:intergenic 45.0%
!!! TTTTTTATTTTATTTTCTTT+GGG - chr3.3:80128680-80128699 None:intergenic 5.0%
AAATGGGGGAGTGGAATTGG+AGG - chr3.3:80127445-80127464 None:intergenic 50.0%
ACCTTGTCAGGAACTGTGCT+AGG - chr3.3:80128531-80128550 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG - chr3.3:80125490-80125509 None:intergenic 50.0%
AGCTGCATAATGTGACTGCC+TGG + chr3.3:80128274-80128293 MS.gene049254:intron 50.0%
CACCGAACCCAAGTTACTTG+TGG + chr3.3:80128209-80128228 MS.gene049254:intron 50.0%
CCGGTCATTAACATTGGTGG+TGG - chr3.3:80127475-80127494 None:intergenic 50.0%
CCTTCCTGATGTTCCAACCA+AGG + chr3.3:80128566-80128585 MS.gene049254:CDS 50.0%
CCTTGGTTGGAACATCAGGA+AGG - chr3.3:80128569-80128588 None:intergenic 50.0%
CGATCTACGTCCGTTACCTT+AGG - chr3.3:80125446-80125465 None:intergenic 50.0%
CGATTGGCAGCATAACTACC+AGG - chr3.3:80128295-80128314 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG - chr3.3:80125489-80125508 None:intergenic 50.0%
GAATTGGAGGCTGGAGAAGA+AGG - chr3.3:80127432-80127451 None:intergenic 50.0%
GAGAGACACCTTGTTGCTAG+AGG + chr3.3:80128108-80128127 MS.gene049254:intron 50.0%
GCATCACTCGTAGTGGTAAC+TGG - chr3.3:80128594-80128613 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG + chr3.3:80128527-80128546 MS.gene049254:CDS 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG - chr3.3:80128667-80128686 None:intergenic 50.0%
!! AGTGTACCTTTTTGGGGGAC+GGG + chr3.3:80126954-80126973 MS.gene049254:intron 50.0%
!! GAGTGTACCTTTTTGGGGGA+CGG + chr3.3:80126953-80126972 MS.gene049254:intron 50.0%
!! GGTGGTGGTGGTTGAAAATG+GGG - chr3.3:80127460-80127479 None:intergenic 50.0%
!! GTGGTGGTGGTTGAAAATGG+GGG - chr3.3:80127459-80127478 None:intergenic 50.0%
CGTAGTGGTAACTGGTGCCT+TGG - chr3.3:80128586-80128605 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG - chr3.3:80128522-80128541 None:intergenic 55.0%
GGTGCCTTGGTTGGAACATC+AGG - chr3.3:80128573-80128592 None:intergenic 55.0%
GGTGGTTGAAAATGGGGGAG+TGG - chr3.3:80127454-80127473 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG - chr3.3:80128582-80128601 None:intergenic 55.0%
TGCTACAGTGCTATAGCGGC+TGG - chr3.3:80125944-80125963 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG - chr3.3:80128666-80128685 None:intergenic 55.0%
!! GTGTACCTTTTTGGGGGACG+GGG + chr3.3:80126955-80126974 MS.gene049254:intron 55.0%
CCTAACCCCGTCCCCCAAAA+AGG - chr3.3:80126963-80126982 None:intergenic 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG - chr3.3:80128665-80128684 None:intergenic 60.0%
!! CCTTTTTGGGGGACGGGGTT+AGG + chr3.3:80126960-80126979 MS.gene049254:intron 60.0%
GGGGGAGTGGAATTGGAGGC+TGG - chr3.3:80127441-80127460 None:intergenic 65.0%
! GGGGTGGGTTCAGAGGGATG+AGG - chr3.3:80128646-80128665 None:intergenic 65.0%
TGGGAGAGAGGGACGGGGGT+GGG - chr3.3:80128661-80128680 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG - chr3.3:80128662-80128681 None:intergenic 70.0%
! AGGGACGGGGGTGGGTTCAG+AGG - chr3.3:80128653-80128672 None:intergenic 70.0%
! GGGACGGGGGTGGGTTCAGA+GGG - chr3.3:80128652-80128671 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 80125419 80128764 80125419 ID=MS.gene049254
chr3.3 mRNA 80125419 80128764 80125419 ID=MS.gene049254.t1;Parent=MS.gene049254
chr3.3 exon 80125419 80125520 80125419 ID=MS.gene049254.t1.exon1;Parent=MS.gene049254.t1
chr3.3 CDS 80125419 80125520 80125419 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
chr3.3 exon 80126218 80126370 80126218 ID=MS.gene049254.t1.exon2;Parent=MS.gene049254.t1
chr3.3 CDS 80126218 80126370 80126218 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
chr3.3 exon 80126724 80126876 80126724 ID=MS.gene049254.t1.exon3;Parent=MS.gene049254.t1
chr3.3 CDS 80126724 80126876 80126724 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
chr3.3 exon 80127111 80127194 80127111 ID=MS.gene049254.t1.exon4;Parent=MS.gene049254.t1
chr3.3 CDS 80127111 80127194 80127111 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
chr3.3 exon 80128501 80128636 80128501 ID=MS.gene049254.t1.exon5;Parent=MS.gene049254.t1
chr3.3 CDS 80128501 80128636 80128501 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
chr3.3 exon 80128739 80128764 80128739 ID=MS.gene049254.t1.exon6;Parent=MS.gene049254.t1
chr3.3 CDS 80128739 80128764 80128739 ID=cds.MS.gene049254.t1;Parent=MS.gene049254.t1
Gene Sequence

>MS.gene049254

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGGTTACCTTTTTCAATACCCTTAATTTCATATCTGTTATTCCATTCTCATTGTGCACGTCAAATTTTCTGATAATTACTTATTAGGGCTAAAAGAGAATGAACAATTGAACTAAAGTTTGGATCAAAAAGTAATCTAACTCATGTATAGTTAGTTTAGATTTAGTTAAGTTAGTTATTGTTCACTACTTCTCATTTTCATATGGACTTATATGTATAAATAGGACCACTGTATTGATTACTGTTGTTCAATACTTCAATTGATAAAGTCGTCAATAATATTTGTTCATTAGTTTTACATACTTTTCAAGTTATATCAAGAATAGTAATAAATATCGGCTATAGCCTATAGCATAGAGGAAATTTAGCAAACCTCTATTGTTCTACGATATGCCATTTATTTAGTAACAAAATGTTGTCAAACCAGCCGCTATAGCACTGTAGCATAGAGGAATTTGAATAAAAACTCTTTTTTGTGTGATCCGAGATTAACAACACTGAGCTAAAATTAGACCGTCTTTGATTGTATCTGGTGTATGGAAAATGAATCAGCTGGACGTTGGTGATGATTGCACTTTTTTGGTTATTAACTGGGATAATATAGTGTTTTAGATTTTGGATAAAACATAAGCACTGAAGTATCAAAGATGATACATTGCCTTACTTGAGTTTTTTCCTTTCTGTGTTCTTTATTTTCCAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAAGTAATATTTTTATTATTGATTTTATTATTCTGTCATTTATTTATAAAAGTCTACTTATTTGTTTTGGTTTGGACCAATAATAATGACTCACTCTCTACCTGTTTGTATCTTTCTATGGCTTTACATTTGTTCTCATCTGTTGAGCCATTGAGTACTTTCCCTTTCCGATAATCTCTACCTGTTAGCATCTTTCTATGGCTTTACAAACGTCCTTGTCTATTGAGCCATTGAGTATTTTCCCTTTCCGATATCCTGTTCAGAAGAGATAATTGAGGGACAACACTGCCCTCTTTTAACATGAATATAAATTTCTACGCCTAAAAGAGATACTTACATTTATTTTGTTGGTTCAGTTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGTGAGCTTGATTTCACTCTTATCCTTACTCTTGCTGCTTCTGAAAACTGATTTCCACATCTAGATTCATTGAACTTGAGTGTACCTTTTTGGGGGACGGGGTTAGGCATTGAAGTTGTACTGGCTTGATTGAGATTTTTGTTCTGTTGGGCTGTTAATATATTTGGCTGCTACTTTTTCTTTGTCAATTCTCATCTACTTGCTGATGGTTTACATGATTTTGCTTAATTTGAAGGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGGTACATGGATTTTTCAGTTTTTGTGATTTTGTCCTGACTTATAAATCCATTCATATTTGTTCCAGCTGTACTACTGGCTTTAATCATAGTATATGGAAAGGACACATTACATGACATGTTTATATGAGAATGATGAGAATGTTTTTTAACCTTTAGATTAAAATAGATGGCTGAGATTATAAGCTCATATGTTAGACACGCGCATCCTTTTTCACTCCCAATAAAATTTTCACGCCTTCTTCTCCAGCCTCCAATTCCACTCCCCCATTTTCAACCACCACCACCAATGTTAATGACCGGATCTTTATTTTCATTGTTATGATTATTGATACAAATAAAGTTTAATTATTGAAAATCAAAATAAATCTTTTTCACGTAACATTAAAACAAGATGAAGGGGAGTTCCGATTGAAAATTGTAAAAATAGTGCAACTAGGATTTTTCACGTAACTATGTGTTTCCGATTGAAAAATTTCAAAATAAATCTCTTTTAAAATCAATTCAACACTAACGGAGTTCCGATTGAAATCACAAATTTGAAATTCATTCGAAACAGGAATACACTTAATTGAAGTTGATTAAAAAACAAACAAAAACCCCAATTCACATCTCAATCATAAAAAGACGTTGTTTAGGTTGATGAAAGAGATGTTTCTATAGATCTGCTTGTAGAAAGAAATTACAGTGAAGATTTGATAGATGAAAAAGCTGCAGAAAATCTGAATGGGTATGGTGGATAGACTAAGTGAGGCACATGGGTTGTTTAAATAAGAATTTTTAATCACAGCCGTTTATTTTTGATCTGATGGTTGATAATTATTCTCATGATTCTCATATAACATACTCATTCTCATAGTATACATCCTCTCTCTCTCTCTCTCTATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACACCTTGTTGCTAGAGGAATGACACATTATATCAGCCGAGACTAATTAATGGAGGTTCTTTATTTGTGGGTTTTATTTGTTTTGATTTTGTTATTCACCGAACCCAAGTTACTTGTGGTATGAGTATGACATCTAGCATAAAAAATGGTGTACTGCAGTTAGCTGCATAATGTGACTGCCTGGTAGTTATGCTGCCAATCGAAACATTGAATTCAATTGTTTGGCCCATCTCTTCTCTAAGCAATGTTTTGAGCTAGTGATTGACTATAGAGGTTATAAATTCAAAATTAGGAATATGATATAAAGGAGACATGTATATGCAATACATCCTTCCCCCATAAATTCTTATTGCATGGCAATTGACTGAATTCATAATATTTCCAACAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCCTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGGTATTGCCTCATCCCTCTGAACCCACCCCCGTCCCTCTCTCCCAAAGAAAATAAAATAAAAAAGTATAGAAGTTGACTAACTGATGGCTGATGTTGCAACAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>MS.gene049254.t1

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA