AlfalfaGEDB | MS.gene53355

M. sativa cultivar XinJiangDaYe / MS.gene53355

KEGG: K15718
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0016491 GO:0016701 GO:0016702 GO:0043167 GO:0043169 GO:0046872 GO:0051213 GO:0055114
PFAM: PF00305.22 PF01477.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53355.t1	XP_013444392.1	96.6	861	29	0	1	861	1	861	0.00E+00	1689.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53355.t1	P24095	78.2	863	183	3	1	861	1	860	0.0e+00	1380.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53355.t1	A0A072TLZ7	96.6	861	29	0	1	861	1	861	0.0e+00	1689.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049681	MS.gene53355	0.80029	1.54E-48	-1.69E-46
MS.gene051255	MS.gene53355	0.810587	1.07E-50	-1.69E-46
MS.gene052709	MS.gene53355	0.897619	1.18E-76	-1.69E-46
MS.gene052711	MS.gene53355	0.926656	3.48E-91	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene53355.t1	MTR_8g018735	97.445	861	22	0	1	861	1	861	1737
MS.gene53355.t1	MTR_8g018730	92.218	861	66	1	1	861	1	860	1659
MS.gene53355.t1	MTR_8g018730	89.082	861	63	2	1	861	1	830	1588
MS.gene53355.t1	MTR_5g024020	85.400	863	124	2	1	861	1	863	1542
MS.gene53355.t1	MTR_5g024020	82.503	863	113	3	1	861	1	827	1472
MS.gene53355.t1	MTR_2g099560	73.727	864	211	7	3	861	7	859	1312
MS.gene53355.t1	MTR_2g099570	71.312	861	235	4	3	861	7	857	1275
MS.gene53355.t1	MTR_8g018420	70.726	854	237	5	11	861	9	852	1260
MS.gene53355.t1	MTR_8g018735	97.724	615	14	0	1	615	1	615	1242
MS.gene53355.t1	MTR_3g081130	68.092	865	261	8	1	861	1	854	1206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene53355.t1	AT1G55020	56.928	866	330	10	10	861	19	855	993
MS.gene53355.t1	AT3G22400	53.204	874	361	10	11	861	34	882	945
MS.gene53355.t1	AT1G72520	45.721	818	423	11	56	861	114	922	714
MS.gene53355.t1	AT1G17420	45.567	812	418	13	63	861	115	915	703
MS.gene53355.t1	AT3G45140	43.986	848	433	19	29	860	70	891	669
MS.gene53355.t1	AT3G45140	46.447	760	377	15	117	860	4	749	656
MS.gene53355.t1	AT1G67560	43.727	821	422	15	63	861	111	913	644

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Find 218 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACTGATTTAAACAA+AGG	0.585127	8.4:-74041035	None:intergenic
AAACTTAATTCAATTGCTAT+TGG	0.320767	8.4:-74041901	None:intergenic
AAAGAGTAAGCAAAGATGTT+TGG	0.416069	8.4:+74039537	None:intergenic
AAAGTATAGGGCAATTCAAC+TGG	0.456366	8.4:-74043181	None:intergenic
AAATAAACTGAACCGATTCA+CGG	0.466221	8.4:-74040341	None:intergenic
AAATTGAAGGGAAAATCCAA+GGG	0.672172	8.4:+74043122	MS.gene53355:CDS
AAATTGTGCTTTCAACACCT+TGG	0.572834	8.4:-74041981	None:intergenic
AACAACTCCGCCAACAATGC+CGG	0.511785	8.4:-74039697	None:intergenic
AACACAAGACGAAGTCCATG+GGG	0.677428	8.4:-74042542	None:intergenic
AACACCGATCTAGGCACATC+TGG	0.499610	8.4:-74044027	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAAGGGAAAATCCAA+GGG	+	chr8.4:74043122-74043141	MS.gene53355:CDS	30.0%
AACTTTGGACAATATCCTTA+TGG	+	chr8.4:74042830-74042849	MS.gene53355:CDS	30.0%
AATCACAGAAAGATCAATGA+GGG	-	chr8.4:74042984-74043003	None:intergenic	30.0%
AATCTTGCTCCATTATCATA+TGG	+	chr8.4:74042780-74042799	MS.gene53355:CDS	30.0%
ACACTGAAATTCAAAAATGG+TGG	+	chr8.4:74042675-74042694	MS.gene53355:CDS	30.0%
ACTAATTGAGCAAAAACAAG+TGG	+	chr8.4:74039977-74039996	MS.gene53355:intron	30.0%
AGAAATATGGGATGCTATTA+AGG	+	chr8.4:74042595-74042614	MS.gene53355:CDS	30.0%
AGCAAACTAAGTGAAATTGA+AGG	+	chr8.4:74043109-74043128	MS.gene53355:CDS	30.0%
ATCTTGTTCTTGAAAGATGA+TGG	+	chr8.4:74041868-74041887	MS.gene53355:CDS	30.0%
ATTAGAACGTTCCTACAAAA+TGG	-	chr8.4:74040870-74040889	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	74039552	74044152	74039552	ID=MS.gene53355
chr8.4	mRNA	74039552	74044152	74039552	ID=MS.gene53355.t1;Parent=MS.gene53355
chr8.4	exon	74039552	74039786	74039552	ID=MS.gene53355.t1.exon1;Parent=MS.gene53355.t1
chr8.4	CDS	74039552	74039786	74039552	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74040139	74040425	74040139	ID=MS.gene53355.t1.exon2;Parent=MS.gene53355.t1
chr8.4	CDS	74040139	74040425	74040139	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74040585	74040825	74040585	ID=MS.gene53355.t1.exon3;Parent=MS.gene53355.t1
chr8.4	CDS	74040585	74040825	74040585	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74040919	74041239	74040919	ID=MS.gene53355.t1.exon4;Parent=MS.gene53355.t1
chr8.4	CDS	74040919	74041239	74040919	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74041373	74041458	74041373	ID=MS.gene53355.t1.exon5;Parent=MS.gene53355.t1
chr8.4	CDS	74041373	74041458	74041373	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74041564	74041671	74041564	ID=MS.gene53355.t1.exon6;Parent=MS.gene53355.t1
chr8.4	CDS	74041564	74041671	74041564	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74041766	74042067	74041766	ID=MS.gene53355.t1.exon7;Parent=MS.gene53355.t1
chr8.4	CDS	74041766	74042067	74041766	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74042160	74042423	74042160	ID=MS.gene53355.t1.exon8;Parent=MS.gene53355.t1
chr8.4	CDS	74042160	74042423	74042160	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74042514	74043253	74042514	ID=MS.gene53355.t1.exon9;Parent=MS.gene53355.t1
chr8.4	CDS	74042514	74043253	74042514	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1
chr8.4	exon	74043983	74044152	74043983	ID=MS.gene53355.t1.exon10;Parent=MS.gene53355.t1
chr8.4	CDS	74043983	74044152	74043983	ID=cds.MS.gene53355.t1;Parent=MS.gene53355.t1

Gene Sequence

>MS.gene53355

ATGTTTGGCATCTTAAACAACAAGGGCCAAAAAATCAAGGGGACTGTGGTGTTGATGCCCAAAAATGTTTTGGATTTCAATGCCATAACGTCCGTCGGTAAAGGCGGTGTTATTGACACCGCCGGAAATATCATCGGAGGAGTCACCGGCATTGTTGGCGGAGTTGTTGACACTGCCACTGCTTTCTTAGGCCGTAACGTCTCTATGCAGTTGATAAGTGCTACTAAGACTGATGGTTTGTTCTCTACATCTTCAAATTTTCAAGCTATTACATGAAGAAATAAAATTAACCGAGACATAATTATTAACCAATATTCAATAATATACTAGCTAGATAAATAAACAATAAATTAATAATTAACCGTGAATACTATCATGCAAAAATTATTCTGTCCATTAATTTCCTAGTCAAGAATAAATTTTTCACTAATTGAGCAAAAACAAGTGGCAGATATTTGATGTACTTAATTTGTTTTTGGTCTTGAAATATCTGAATTTGACAATATATACTATAGTACTATATTATACAACAAGTGTCCATTTTCTAGTGATTATGTTAAATTATGGGCTTGTGTTTAATTTTGTAGCAAGTGGAAAGGGACTAGTCGGAAAGGAAACATTTTTGAGCAAACATCTACCACAGTTACCAACTTTGGGAGCAAGACAAGATGCATTCAGTATTTTCTTTGAATATGATGCTAATTTTGGAATTCCTGGAGCATTTTACATAAGAAATTATACACAAGCTGAGTTTTTCCTTGTTAGTGTGACTCTTGAAGATATTCCTAACCGTGAATCGGTTCAGTTTATTTGTAACTCATGGGTCTACAACTTCAAAAGTTACAAAAAAGACCGCATCTTCTTCACCAATGATGTAAGTTTTAAATTCTAAATTAAGGGTTAAATATGTTTATATGATTGTAGGAGAGTTTAGCAAACTTATATTTTTTACCTATAAAAAAATTACACATTTCTTGATAAATTATAAATTATAAATGAGAAAATAAAAATAAAAAAATTGAATTTGTTACAGACGTATCTTCCAAGTCAAACACCGGCTCCATTAAATCATTATAGAGAAGAAGAGTTGCAGACTCTAAGAGGAGATGGAACTGGAGAGCGCAAAGAATCGGATAGGGTTTATGATTATGATGTTTATAATGATTTGGGAAATCCAGATGGTGGTGACGCACTTGTCCGACCAGTCCTTGGGGGATCAAGCACCTATCCCTACCCTCGCAGGGTTAGAAGTGGTAGAAAACCAACCAGAAAAGGTTAGTTTACTACCGTATAGCGGTTAGTGAAATTAATGTGTCCATTTTGTAGGAACGTTCTAATTGGTTTTATGTTATTTTTATTCTTAACAGATCCTAAGAGTGAGAAGCCGGGTGTGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCCTTATGTATGGAATAAAATCACTGTCTCAAAATGTCATACCTTTGTTTAAATCAGTGATTTTTGACCTCAATTTCACTCCAAATGAGTTCGATAGCTTCGATGAAGTACGTGATCTTTTTGAAGGTGGGATTAAGCTTCCTACAGATATACTTAGTCAAATTAGTCCCTTACCAGCCCTTAAGGAAATCTTTCGCACCGATGGTGAACAAGTCCTCAAGTTTCCACCTCCTCATGTAATCAAAGGTACCTTGTTCATCGAAATCGAATCAATTATAGTTAACATGTTCCTTTCATGCATTTTTAACATGTTCCTTTCATGCATTTTATTAGTATCATGCATTTTGAATTAATCCAATTTGACAATTATTTTGAACAGTTAGCAAGTCTGCATGGATGACTGATGAAGAATTTGGAAGAGAGATGGTTGCTGGTGTAAATCCTAATGTGATTCGACTTCTTCAAGTACGTACCAAATGTATTCTTAATATATATTAGCTAAAATATGTATTTTGTTGTCAATATCTCAATGCTTATATATTTCTATGCAATTTTTCTTTGCTATGCCAGGAGTTTCCACCAAAAAGCACACTAGATACCACTGTGTATGGTGATCAAAATAGCACAATAACAAAAGAACACTTAGAGACTAACCTTGGTGATATCACAGTAGATGAGGTAATGATAAAAAATGGTTCAATTAATAGTCATTGGCTTGTGTAAATATTCAAAATTATGAAATCATGCTATTGAAATTAATTTTGTGGAACAGGCACTTAATGGAAAGAGATTATTCCTCTTAGATTACCATGATGCATTCATGCCATATTTGGAGAAGATAAACATAAATGCAAAGGCTTATGCCACAAGAACAATCTTGTTCTTGAAAGATGATGGGACTTTGAAACCAATAGCAATTGAATTAAGTTTGCCACACTCAAATGGGGTCCAATATGGTTCTGAAAGCAAAGTATACTTACCTGCTGACCAAGGTGTTGAAAGCACAATTTGGCTTTTGGCAAAGGCTCATGTCATTGTAAATGACTCATGCTATCATCAACTCATGAGCCATTGGTATGAACTCTATTTAATCATATATCTAAAAAATAACTTTAGAATATGCATTGTATGACATGATTATTAATATAAAAAAAATGGGGTTGCAGGTTGAATACTCATGCAGTGGTTGAACCATTCATCATAGCAACAAATAGGCATCTAAGTGTTCTTCACCCAATTAACAAACTTTTATTTCCTCATTTCCGTGATACAATAAATATCAATGGACTTGCTCGACAATCTCTAATCAATGCTGGTGGCATTATAGAGCAAACATTTTTGCCAGGACCAAATTCAGTCGAGATTTCTTCAATAGTTTACAAGGATTGGGTTTTCACCGACCAAGCATTACCAGCTGATCTTATCAAGAGGTATTTTTCGACCACGATTTGGACCATCTATATAAAAATTAGGAGCAATTTCTTAGTTATTATTGATAACAAATTATCTTCTTGATTCAGAGGACTTGCTGTTGAGGACCCGTCTTCCCCCCATGGACTTCGTCTTGTGTTAGAAGACTACCCTTATGCCGTTGATGGACTAGAAATATGGGATGCTATTAAGGCATGGGTCCAAGACTATGTCTCCTTATACTATCCAACAGATGAGGCAGTGCAAAAAGACACTGAAATTCAAAAATGGTGGAAGGAAGCTGTAGAAAAGGGTCATGGTGACTTGAAAGACAAGCCATGGTGGCCTAAGATGCAAACACTTCAAGACTTGGTTCAATCTTGCTCCATTATCATATGGACTGCTTCAGCTCTTCATGCAGCAGTTAACTTTGGACAATATCCTTATGGAGGATATATCCTGAACCGTCCAACTCTTAGTAGAAGATTTATTCCGGAGCCAGGAACTCCGGAATATGATGAGATGGTGAAAAGTCCTCAAAAGGCATATTTGAGAACTATTACACCAAAGTTTCAGACCCTCATTGATCTTTCTGTGATTGAGATATTGTCAAGACATGCTTCTGATGAGGTCTACCTTGGAGAGAGGAACGACAAGTTTTGGACATCTGATACAAGGGCAGTACAAGCCTTCCAAAAGTTTGGAAGCAAACTAAGTGAAATTGAAGGGAAAATCCAAGGGAGGAACAAAGATTCTAGTTTGAAAAACCGCACTGGACCAGTTGAATTGCCCTATACTTTGCTCCTTCGTTCAAGTGAAGAAGGTTTAACATTCAGAGGAATTCCCAACAGTATCTCTATCTAAAAAAAAAATTGTGTGATTTTCTTATCCTTATTGCACTCGTGCTTTTCAATAACATCGATGTACATCGATGTGATGATTGTCTATTTATAGTTGTTGTTTCTATGTGTGTACTACTATTGTATTTGGGTGTTTTCATTCGAATATAATAATGTGTTTGTTGATAGGGAAAGATATCTCTTCAACACACTTGAGATTGATGATTAACCTAGGACATTAGATTCTTACGGAGTTCTAAGTTAATAGGTTTATTGTTTCAAGTTTAGACTTGCGGTGCAAGAAACAAACGCGTGAAGATGAATATAAGAACAAAATGATTTAGTATAAAAATGAAGAAAAGCAACAACAAAAAGTAAAAAGAAATGATACTATTATTAACAAAGATACATCATTTGATCAACAACCAGTGAAATGTTTAATTTATTGAGCAGATGTATAATCTATTAGGCAAGTTTACCAAATGGAAATGAACTACTCTGCATGGAGGAGAACAAACCCCCAATTAATAGCAAAAGAAATGAACTAACTTCTATGCTTCATGTTTGCCATGTCTTTTTACTAACTTAAAGCTTCCTTTGCAAGTTTCTTTCAACCTACACATTATATTAATTGCCGAAGGAAATTTGAAAGTGATACTTTAATTGAAATCAATGTAAATTTTAGGCATTTTGAAGAAAGTAGTAATACTCATAGGTGAAGTAGGTACTCTACCTCGCAGTCAGCAGGACCTTCTGTACCGACTACGAGGGGTTTTTGGATGGACCAGATGTGCCTAGATCGGTGTTTCCTCCTATTGTAGACCTAGTGCCCGACGTGGAGAAAAAATCGGTTTCTTTCACTTCCGAAGGAGTGAGCTACTTTGAAATTTCGGACCACTGCATTACTTGA

Protein sequence

>MS.gene53355.t1

MFGILNNKGQKIKGTVVLMPKNVLDFNAITSVGKGGVIDTAGNIIGGVTGIVGGVVDTATAFLGRNVSMQLISATKTDASGKGLVGKETFLSKHLPQLPTLGARQDAFSIFFEYDANFGIPGAFYIRNYTQAEFFLVSVTLEDIPNRESVQFICNSWVYNFKSYKKDRIFFTNDTYLPSQTPAPLNHYREEELQTLRGDGTGERKESDRVYDYDVYNDLGNPDGGDALVRPVLGGSSTYPYPRRVRSGRKPTRKDPKSEKPGVIYVPRDENFGHLKSSDFLMYGIKSLSQNVIPLFKSVIFDLNFTPNEFDSFDEVRDLFEGGIKLPTDILSQISPLPALKEIFRTDGEQVLKFPPPHVIKVSKSAWMTDEEFGREMVAGVNPNVIRLLQEFPPKSTLDTTVYGDQNSTITKEHLETNLGDITVDEALNGKRLFLLDYHDAFMPYLEKININAKAYATRTILFLKDDGTLKPIAIELSLPHSNGVQYGSESKVYLPADQGVESTIWLLAKAHVIVNDSCYHQLMSHWLNTHAVVEPFIIATNRHLSVLHPINKLLFPHFRDTININGLARQSLINAGGIIEQTFLPGPNSVEISSIVYKDWVFTDQALPADLIKRGLAVEDPSSPHGLRLVLEDYPYAVDGLEIWDAIKAWVQDYVSLYYPTDEAVQKDTEIQKWWKEAVEKGHGDLKDKPWWPKMQTLQDLVQSCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRFIPEPGTPEYDEMVKSPQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGERNDKFWTSDTRAVQAFQKFGSKLSEIEGKIQGRNKDSSLKNRTGPVELPYTLLLRSSEEGLTFRGIPNISRTFCTDYEGFLDGPDVPRSVFPPIVDLVPDVEKKSVSFTSEGVSYFEISDHCIT