Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53604.t1 | KEH41194.1 | 97.9 | 236 | 5 | 0 | 1 | 236 | 1 | 236 | 2.40E-110 | 408.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53604.t1 | Q9T0H8 | 63.2 | 234 | 79 | 2 | 3 | 236 | 18 | 244 | 9.8e-76 | 284.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53604.t1 | A0A072VGM0 | 97.9 | 236 | 5 | 0 | 1 | 236 | 1 | 236 | 1.8e-110 | 408.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052211 | MS.gene53604 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene054146 | MS.gene53604 | 0.80368 | 3.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53604.t1 | MTR_1g046490 | 97.881 | 236 | 5 | 0 | 1 | 236 | 1 | 236 | 5.34e-168 | 462 |
| MS.gene53604.t1 | MTR_1g046800 | 89.130 | 230 | 23 | 1 | 7 | 236 | 23 | 250 | 3.16e-147 | 410 |
| MS.gene53604.t1 | MTR_1g046500 | 89.565 | 230 | 22 | 1 | 7 | 236 | 23 | 250 | 1.06e-142 | 399 |
| MS.gene53604.t1 | MTR_4g062520 | 42.060 | 233 | 113 | 6 | 19 | 236 | 78 | 303 | 3.76e-40 | 140 |
| MS.gene53604.t1 | MTR_4g062470 | 42.982 | 228 | 109 | 6 | 23 | 236 | 84 | 304 | 3.93e-40 | 140 |
| MS.gene53604.t1 | MTR_1g115510 | 38.235 | 238 | 124 | 6 | 19 | 236 | 119 | 353 | 1.44e-38 | 137 |
| MS.gene53604.t1 | MTR_7g021300 | 36.719 | 256 | 122 | 8 | 5 | 234 | 146 | 387 | 3.70e-38 | 137 |
| MS.gene53604.t1 | MTR_4g062460 | 38.596 | 228 | 120 | 7 | 21 | 234 | 36 | 257 | 3.60e-34 | 123 |
| MS.gene53604.t1 | MTR_1g115515 | 28.708 | 209 | 117 | 4 | 23 | 226 | 43 | 224 | 1.45e-17 | 79.0 |
| MS.gene53604.t1 | MTR_1g054525 | 35.780 | 109 | 67 | 2 | 104 | 209 | 62 | 170 | 2.88e-15 | 72.0 |
| MS.gene53604.t1 | MTR_4g049550 | 37.069 | 116 | 64 | 3 | 122 | 234 | 66 | 175 | 9.74e-15 | 70.1 |
| MS.gene53604.t1 | MTR_4g122110 | 37.079 | 89 | 55 | 1 | 120 | 207 | 66 | 154 | 2.30e-14 | 69.3 |
| MS.gene53604.t1 | MTR_7g093790 | 41.489 | 94 | 53 | 2 | 120 | 211 | 76 | 169 | 4.89e-14 | 68.6 |
| MS.gene53604.t1 | MTR_4g122130 | 39.000 | 100 | 58 | 3 | 114 | 211 | 60 | 158 | 7.37e-14 | 67.8 |
| MS.gene53604.t1 | MTR_4g013385 | 40.000 | 90 | 53 | 1 | 122 | 210 | 78 | 167 | 8.29e-14 | 68.2 |
| MS.gene53604.t1 | MTR_0433s0040 | 40.000 | 90 | 53 | 1 | 122 | 210 | 78 | 167 | 8.29e-14 | 68.2 |
| MS.gene53604.t1 | MTR_7g093820 | 38.947 | 95 | 56 | 2 | 119 | 211 | 78 | 172 | 1.47e-13 | 67.4 |
| MS.gene53604.t1 | MTR_7g093850 | 40.000 | 95 | 55 | 2 | 119 | 211 | 78 | 172 | 1.74e-13 | 67.0 |
| MS.gene53604.t1 | MTR_4g013335 | 29.927 | 137 | 93 | 2 | 76 | 209 | 36 | 172 | 2.73e-13 | 66.6 |
| MS.gene53604.t1 | MTR_7g093830 | 38.947 | 95 | 56 | 2 | 119 | 211 | 77 | 171 | 2.73e-13 | 66.6 |
| MS.gene53604.t1 | MTR_4g049570 | 34.211 | 114 | 70 | 2 | 122 | 234 | 66 | 175 | 4.72e-13 | 65.9 |
| MS.gene53604.t1 | MTR_4g013310 | 30.147 | 136 | 84 | 3 | 106 | 236 | 67 | 196 | 6.42e-13 | 65.9 |
| MS.gene53604.t1 | MTR_4g013325 | 36.667 | 90 | 56 | 1 | 121 | 209 | 86 | 175 | 8.27e-13 | 65.5 |
| MS.gene53604.t1 | MTR_4g013770 | 38.298 | 94 | 57 | 1 | 121 | 213 | 78 | 171 | 1.72e-12 | 64.3 |
| MS.gene53604.t1 | MTR_3g034030 | 32.407 | 108 | 72 | 1 | 102 | 208 | 53 | 160 | 4.10e-12 | 63.2 |
| MS.gene53604.t1 | MTR_4g078885 | 31.481 | 108 | 73 | 1 | 102 | 208 | 53 | 160 | 1.97e-11 | 61.2 |
| MS.gene53604.t1 | MTR_7g093870 | 36.082 | 97 | 56 | 2 | 120 | 211 | 76 | 171 | 3.71e-11 | 61.2 |
| MS.gene53604.t1 | MTR_4g013345 | 35.955 | 89 | 56 | 1 | 122 | 209 | 84 | 172 | 5.31e-11 | 60.5 |
| MS.gene53604.t1 | MTR_5g096120 | 41.304 | 92 | 52 | 1 | 122 | 211 | 76 | 167 | 6.32e-11 | 60.1 |
| MS.gene53604.t1 | MTR_7g070390 | 32.609 | 92 | 61 | 1 | 121 | 211 | 79 | 170 | 9.76e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53604.t1 | AT4G13580 | 68.803 | 234 | 66 | 2 | 3 | 236 | 18 | 244 | 2.56e-109 | 315 |
| MS.gene53604.t1 | AT3G24020 | 66.525 | 236 | 72 | 2 | 1 | 236 | 15 | 243 | 8.99e-109 | 313 |
| MS.gene53604.t1 | AT1G07730 | 44.348 | 230 | 106 | 6 | 25 | 236 | 164 | 389 | 5.63e-44 | 152 |
| MS.gene53604.t1 | AT3G55230 | 39.918 | 243 | 124 | 7 | 15 | 236 | 62 | 303 | 1.11e-42 | 147 |
| MS.gene53604.t1 | AT2G28670 | 46.087 | 230 | 100 | 6 | 27 | 236 | 1 | 226 | 1.34e-42 | 144 |
| MS.gene53604.t1 | AT2G28670 | 46.121 | 232 | 101 | 6 | 25 | 236 | 209 | 436 | 8.13e-42 | 147 |
| MS.gene53604.t1 | AT2G39430 | 40.496 | 242 | 122 | 8 | 16 | 236 | 80 | 320 | 1.88e-41 | 144 |
| MS.gene53604.t1 | AT1G65870 | 33.636 | 110 | 70 | 2 | 108 | 214 | 62 | 171 | 9.26e-15 | 70.5 |
| MS.gene53604.t1 | AT5G42510 | 38.043 | 92 | 56 | 1 | 118 | 208 | 69 | 160 | 1.55e-13 | 67.0 |
| MS.gene53604.t1 | AT3G13650 | 34.409 | 93 | 60 | 1 | 122 | 213 | 74 | 166 | 2.31e-13 | 66.6 |
| MS.gene53604.t1 | AT5G42500 | 35.484 | 93 | 59 | 1 | 120 | 211 | 74 | 166 | 6.52e-13 | 65.5 |
| MS.gene53604.t1 | AT3G58090 | 34.091 | 88 | 57 | 1 | 125 | 211 | 163 | 250 | 2.42e-12 | 65.1 |
| MS.gene53604.t1 | AT5G49030 | 35.165 | 91 | 58 | 1 | 122 | 211 | 79 | 169 | 3.07e-12 | 66.2 |
| MS.gene53604.t1 | AT5G49040 | 35.165 | 91 | 58 | 1 | 122 | 211 | 79 | 169 | 3.20e-11 | 60.8 |
| MS.gene53604.t1 | AT1G22900 | 36.364 | 88 | 55 | 1 | 122 | 208 | 84 | 171 | 3.61e-11 | 60.8 |
Find 68 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTTCCTGTGGCTGCAAT+TGG | 0.276263 | 1.2:-29280594 | None:intergenic |
| CCTACTGTTAATGGTGTTAC+TGG | 0.279068 | 1.2:+29280789 | MS.gene53604:CDS |
| GGATTAACACCATTTGCATT+AGG | 0.297019 | 1.2:-29280768 | None:intergenic |
| GGACCTGATGGACTTGGATT+AGG | 0.319881 | 1.2:+29280897 | MS.gene53604:CDS |
| TTAACATCCCAACCTGAGTT+AGG | 0.342000 | 1.2:+29280951 | MS.gene53604:CDS |
| GATGGACTTGGATTAGGATT+TGG | 0.351208 | 1.2:+29280903 | MS.gene53604:CDS |
| GATTAACACCATTTGCATTA+GGG | 0.356622 | 1.2:-29280767 | None:intergenic |
| GGTGTTACTGGTATCCCTTT+AGG | 0.357291 | 1.2:+29280801 | MS.gene53604:CDS |
| GGTGTTAATCCTACTGTTAA+TGG | 0.373730 | 1.2:+29280780 | MS.gene53604:CDS |
| TGATTGTTATTGTTGTTGTT+TGG | 0.384388 | 1.2:-29280852 | None:intergenic |
| AAGTACTATGTCGCGATTGT+CGG | 0.386251 | 1.2:+29281115 | MS.gene53604:CDS |
| ACTGGTATCCCTTTAGGAAC+TGG | 0.388166 | 1.2:+29280807 | MS.gene53604:CDS |
| CTTGGAATGTTGAATCCAAC+TGG | 0.413683 | 1.2:-29280729 | None:intergenic |
| ACCTGTCCAGGTGGAATAAG+AGG | 0.418722 | 1.2:-29281191 | None:intergenic |
| TTGTCGGTTGTAGGAGGGAC+GGG | 0.426417 | 1.2:+29281131 | MS.gene53604:CDS |
| TTGTTCATGCATGACATTCT+TGG | 0.430091 | 1.2:+29280630 | MS.gene53604:CDS |
| CCTTTAGGAACTGGTTTAGC+TGG | 0.430422 | 1.2:+29280816 | MS.gene53604:CDS |
| GGGAAGTTTAAGTATGCAAA+AGG | 0.440542 | 1.2:+29281152 | MS.gene53604:CDS |
| CCGGTCACTGGTCGAGCCGT+TGG | 0.445896 | 1.2:-29280663 | None:intergenic |
| ACACCATTTGCATTAGGGAT+TGG | 0.448404 | 1.2:-29280762 | None:intergenic |
| ACCTCTTATTCCACCTGGAC+AGG | 0.449379 | 1.2:+29281190 | MS.gene53604:CDS |
| ATACTCATCAGTACTTCAAA+TGG | 0.453720 | 1.2:-29281253 | None:intergenic |
| CAGCTAAACCAGTTCCTAAA+GGG | 0.469050 | 1.2:-29280815 | None:intergenic |
| AACAATGTTCAGTTAACGTT+AGG | 0.471550 | 1.2:+29280876 | MS.gene53604:CDS |
| TGCATGAACAACTCAATGAT+TGG | 0.478315 | 1.2:-29280618 | None:intergenic |
| TTGTGACCCTAACTCAGGTT+GGG | 0.482579 | 1.2:-29280958 | None:intergenic |
| ATGTCGCGATTGTCGGTTGT+AGG | 0.484227 | 1.2:+29281122 | MS.gene53604:CDS |
| ATGCCAATCCCTAATGCAAA+TGG | 0.485841 | 1.2:+29280759 | MS.gene53604:CDS |
| CGGTCACTGGTCGAGCCGTT+GGG | 0.485879 | 1.2:-29280662 | None:intergenic |
| CCAGCTAAACCAGTTCCTAA+AGG | 0.497997 | 1.2:-29280816 | None:intergenic |
| AATCCTAATCCAAGTCCATC+AGG | 0.506312 | 1.2:-29280900 | None:intergenic |
| CGACCAGTGACCGGTTTGCT+CGG | 0.510231 | 1.2:+29280672 | MS.gene53604:CDS |
| TCGCGATTGTCGGTTGTAGG+AGG | 0.512692 | 1.2:+29281125 | MS.gene53604:CDS |
| CCTGGACAGGTTGCTACTGA+TGG | 0.513998 | 1.2:+29281203 | MS.gene53604:CDS |
| ACGTTAGGACCTGATGGACT+TGG | 0.520993 | 1.2:+29280891 | MS.gene53604:CDS |
| GAGTTAGGGTCACAAATTGT+TGG | 0.522360 | 1.2:+29280966 | MS.gene53604:CDS |
| TAACATCCCAACCTGAGTTA+GGG | 0.524025 | 1.2:+29280952 | MS.gene53604:CDS |
| CCATCAGTAGCAACCTGTCC+AGG | 0.527354 | 1.2:-29281203 | None:intergenic |
| GAATCCAACTGGGGTTGCAA+AGG | 0.532298 | 1.2:-29280718 | None:intergenic |
| TGATGGGAGTAGACAAATGA+TGG | 0.540481 | 1.2:+29281022 | MS.gene53604:CDS |
| GTATATGTTGCCGAGCAAAC+CGG | 0.541501 | 1.2:-29280682 | None:intergenic |
| TTCATGCATGACATTCTTGG+TGG | 0.543393 | 1.2:+29280633 | MS.gene53604:CDS |
| CTGAGACCTCTTATTCCACC+TGG | 0.543896 | 1.2:+29281185 | MS.gene53604:CDS |
| AATCCAACTGGGGTTGCAAA+GGG | 0.544346 | 1.2:-29280717 | None:intergenic |
| ATGTAGCAAGTTCGGCTGAT+GGG | 0.544628 | 1.2:+29281006 | MS.gene53604:CDS |
| AATGATTGGTTCCTTTCCTG+TGG | 0.544898 | 1.2:-29280604 | None:intergenic |
| GGGATTGGCATACTATCACT+TGG | 0.545050 | 1.2:-29280747 | None:intergenic |
| TTGCCGAGCAAACCGGTCAC+TGG | 0.546279 | 1.2:-29280675 | None:intergenic |
| GTACCCTTTGCAACCCCAGT+TGG | 0.549320 | 1.2:+29280714 | MS.gene53604:CDS |
| TTTGTGACCCTAACTCAGGT+TGG | 0.552926 | 1.2:-29280959 | None:intergenic |
| GGAAGTTTAAGTATGCAAAA+GGG | 0.559845 | 1.2:+29281153 | MS.gene53604:CDS |
| TCCAATTGCAGCCACAGGAA+AGG | 0.562874 | 1.2:+29280593 | MS.gene53604:CDS |
| TATGTAGCAAGTTCGGCTGA+TGG | 0.564220 | 1.2:+29281005 | MS.gene53604:CDS |
| ATTGATCCAATTGCAGCCAC+AGG | 0.569919 | 1.2:+29280588 | MS.gene53604:CDS |
| CGCGATTGTCGGTTGTAGGA+GGG | 0.572138 | 1.2:+29281126 | MS.gene53604:CDS |
| CCAGTAACACCATTAACAGT+AGG | 0.579036 | 1.2:-29280789 | None:intergenic |
| CAGTTAACGTTAGGACCTGA+TGG | 0.580607 | 1.2:+29280885 | MS.gene53604:CDS |
| TGTCGGTTGTAGGAGGGACG+GGG | 0.591191 | 1.2:+29281132 | MS.gene53604:CDS |
| ACAATTTGTGACCCTAACTC+AGG | 0.596548 | 1.2:-29280963 | None:intergenic |
| ATTGTCGGTTGTAGGAGGGA+CGG | 0.596598 | 1.2:+29281130 | MS.gene53604:CDS |
| CCAACGGCTCGACCAGTGAC+CGG | 0.606503 | 1.2:+29280663 | MS.gene53604:CDS |
| TTGGAATGTTGAATCCAACT+GGG | 0.618283 | 1.2:-29280728 | None:intergenic |
| TACCATTGCAATGATGGCAA+TGG | 0.622938 | 1.2:+29280548 | None:intergenic |
| TCTTGGTGGCAGTAACCCAA+CGG | 0.656099 | 1.2:+29280647 | MS.gene53604:CDS |
| TCAGTAGCAACCTGTCCAGG+TGG | 0.657359 | 1.2:-29281200 | None:intergenic |
| ATGGTGCTGAGACTTTGTTG+AGG | 0.693982 | 1.2:+29281222 | MS.gene53604:CDS |
| TTGCTCGGCAACATATACAG+TGG | 0.727097 | 1.2:+29280687 | MS.gene53604:CDS |
| TGGAATGTTGAATCCAACTG+GGG | 0.746650 | 1.2:-29280727 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATGGTTTGTATAAGAT+TGG | + | chr1.2:29281092-29281111 | MS.gene53604:CDS | 20.0% |
| !! | GGTGATAGTTTGAATTTTTA+TGG | + | chr1.2:29281077-29281096 | MS.gene53604:CDS | 25.0% |
| !! | TGATTGTTATTGTTGTTGTT+TGG | - | chr1.2:29280855-29280874 | None:intergenic | 25.0% |
| AAATTGTTGGAAAAAGTCAG+GGG | + | chr1.2:29280979-29280998 | MS.gene53604:CDS | 30.0% | |
| AACAATGTTCAGTTAACGTT+AGG | + | chr1.2:29280876-29280895 | MS.gene53604:CDS | 30.0% | |
| ACAAATTGTTGGAAAAAGTC+AGG | + | chr1.2:29280977-29280996 | MS.gene53604:CDS | 30.0% | |
| CAAATTGTTGGAAAAAGTCA+GGG | + | chr1.2:29280978-29280997 | MS.gene53604:CDS | 30.0% | |
| GATTAACACCATTTGCATTA+GGG | - | chr1.2:29280770-29280789 | None:intergenic | 30.0% | |
| GGAAGTTTAAGTATGCAAAA+GGG | + | chr1.2:29281153-29281172 | MS.gene53604:CDS | 30.0% | |
| !! | GTTTTTACAGCACTTTTTGA+AGG | + | chr1.2:29281044-29281063 | MS.gene53604:CDS | 30.0% |
| AATTGTTGGAAAAAGTCAGG+GGG | + | chr1.2:29280980-29280999 | MS.gene53604:CDS | 35.0% | |
| GGATTAACACCATTTGCATT+AGG | - | chr1.2:29280771-29280790 | None:intergenic | 35.0% | |
| GGGAAGTTTAAGTATGCAAA+AGG | + | chr1.2:29281152-29281171 | MS.gene53604:CDS | 35.0% | |
| GGTGTTAATCCTACTGTTAA+TGG | + | chr1.2:29280780-29280799 | MS.gene53604:CDS | 35.0% | |
| TGCATGAACAACTCAATGAT+TGG | - | chr1.2:29280621-29280640 | None:intergenic | 35.0% | |
| TTGGAATGTTGAATCCAACT+GGG | - | chr1.2:29280731-29280750 | None:intergenic | 35.0% | |
| TTGTTCATGCATGACATTCT+TGG | + | chr1.2:29280630-29280649 | MS.gene53604:CDS | 35.0% | |
| !! | TTACAGCACTTTTTGAAGGA+GGG | + | chr1.2:29281048-29281067 | MS.gene53604:CDS | 35.0% |
| !! | TTTACAGCACTTTTTGAAGG+AGG | + | chr1.2:29281047-29281066 | MS.gene53604:CDS | 35.0% |
| AAGTACTATGTCGCGATTGT+CGG | + | chr1.2:29281115-29281134 | MS.gene53604:CDS | 40.0% | |
| AATCCTAATCCAAGTCCATC+AGG | - | chr1.2:29280903-29280922 | None:intergenic | 40.0% | |
| ACAATTTGTGACCCTAACTC+AGG | - | chr1.2:29280966-29280985 | None:intergenic | 40.0% | |
| ACACCATTTGCATTAGGGAT+TGG | - | chr1.2:29280765-29280784 | None:intergenic | 40.0% | |
| ATGCCAATCCCTAATGCAAA+TGG | + | chr1.2:29280759-29280778 | MS.gene53604:CDS | 40.0% | |
| CAGCTAAACCAGTTCCTAAA+GGG | - | chr1.2:29280818-29280837 | None:intergenic | 40.0% | |
| CCAGTAACACCATTAACAGT+AGG | - | chr1.2:29280792-29280811 | None:intergenic | 40.0% | |
| CTTGGAATGTTGAATCCAAC+TGG | - | chr1.2:29280732-29280751 | None:intergenic | 40.0% | |
| GAGTTAGGGTCACAAATTGT+TGG | + | chr1.2:29280966-29280985 | MS.gene53604:CDS | 40.0% | |
| TAACATCCCAACCTGAGTTA+GGG | + | chr1.2:29280952-29280971 | MS.gene53604:CDS | 40.0% | |
| TGATGGGAGTAGACAAATGA+TGG | + | chr1.2:29281022-29281041 | MS.gene53604:CDS | 40.0% | |
| TGGAATGTTGAATCCAACTG+GGG | - | chr1.2:29280730-29280749 | None:intergenic | 40.0% | |
| TTAACATCCCAACCTGAGTT+AGG | + | chr1.2:29280951-29280970 | MS.gene53604:CDS | 40.0% | |
| TTCATGCATGACATTCTTGG+TGG | + | chr1.2:29280633-29280652 | MS.gene53604:CDS | 40.0% | |
| ! | AATGATTGGTTCCTTTCCTG+TGG | - | chr1.2:29280607-29280626 | None:intergenic | 40.0% |
| ! | GATGGACTTGGATTAGGATT+TGG | + | chr1.2:29280903-29280922 | MS.gene53604:CDS | 40.0% |
| !! | CCTACTGTTAATGGTGTTAC+TGG | + | chr1.2:29280789-29280808 | MS.gene53604:CDS | 40.0% |
| !! | TACAGCACTTTTTGAAGGAG+GGG | + | chr1.2:29281049-29281068 | MS.gene53604:CDS | 40.0% |
| AATCCAACTGGGGTTGCAAA+GGG | - | chr1.2:29280720-29280739 | None:intergenic | 45.0% | |
| ATGTAGCAAGTTCGGCTGAT+GGG | + | chr1.2:29281006-29281025 | MS.gene53604:CDS | 45.0% | |
| ATTGATCCAATTGCAGCCAC+AGG | + | chr1.2:29280588-29280607 | MS.gene53604:CDS | 45.0% | |
| CAGTTAACGTTAGGACCTGA+TGG | + | chr1.2:29280885-29280904 | MS.gene53604:CDS | 45.0% | |
| CCAGCTAAACCAGTTCCTAA+AGG | - | chr1.2:29280819-29280838 | None:intergenic | 45.0% | |
| GTATATGTTGCCGAGCAAAC+CGG | - | chr1.2:29280685-29280704 | None:intergenic | 45.0% | |
| TATGTAGCAAGTTCGGCTGA+TGG | + | chr1.2:29281005-29281024 | MS.gene53604:CDS | 45.0% | |
| TTGCTCGGCAACATATACAG+TGG | + | chr1.2:29280687-29280706 | MS.gene53604:CDS | 45.0% | |
| TTGTGACCCTAACTCAGGTT+GGG | - | chr1.2:29280961-29280980 | None:intergenic | 45.0% | |
| TTTGTGACCCTAACTCAGGT+TGG | - | chr1.2:29280962-29280981 | None:intergenic | 45.0% | |
| ! | ACTGGTATCCCTTTAGGAAC+TGG | + | chr1.2:29280807-29280826 | MS.gene53604:CDS | 45.0% |
| ! | ATGGTGCTGAGACTTTGTTG+AGG | + | chr1.2:29281222-29281241 | MS.gene53604:CDS | 45.0% |
| ! | CCTTTAGGAACTGGTTTAGC+TGG | + | chr1.2:29280816-29280835 | MS.gene53604:CDS | 45.0% |
| ! | GGGATTGGCATACTATCACT+TGG | - | chr1.2:29280750-29280769 | None:intergenic | 45.0% |
| !! | CTTTTTGAAGGAGGGGAGTA+TGG | + | chr1.2:29281056-29281075 | MS.gene53604:CDS | 45.0% |
| !! | GGTGTTACTGGTATCCCTTT+AGG | + | chr1.2:29280801-29280820 | MS.gene53604:CDS | 45.0% |
| ACCTCTTATTCCACCTGGAC+AGG | + | chr1.2:29281190-29281209 | MS.gene53604:CDS | 50.0% | |
| ACCTGTCCAGGTGGAATAAG+AGG | - | chr1.2:29281194-29281213 | None:intergenic | 50.0% | |
| CTGAGACCTCTTATTCCACC+TGG | + | chr1.2:29281185-29281204 | MS.gene53604:CDS | 50.0% | |
| GAATCCAACTGGGGTTGCAA+AGG | - | chr1.2:29280721-29280740 | None:intergenic | 50.0% | |
| TCCAATTGCAGCCACAGGAA+AGG | + | chr1.2:29280593-29280612 | MS.gene53604:CDS | 50.0% | |
| TCCTTTCCTGTGGCTGCAAT+TGG | - | chr1.2:29280597-29280616 | None:intergenic | 50.0% | |
| ! | ATGTCGCGATTGTCGGTTGT+AGG | + | chr1.2:29281122-29281141 | MS.gene53604:CDS | 50.0% |
| ! | ATTGTCGGTTGTAGGAGGGA+CGG | + | chr1.2:29281130-29281149 | MS.gene53604:CDS | 50.0% |
| ! | GGGGGTGTATGTAGCAAGTT+CGG | + | chr1.2:29280998-29281017 | MS.gene53604:CDS | 50.0% |
| ! | TCTTGGTGGCAGTAACCCAA+CGG | + | chr1.2:29280647-29280666 | MS.gene53604:CDS | 50.0% |
| !! | ACGTTAGGACCTGATGGACT+TGG | + | chr1.2:29280891-29280910 | MS.gene53604:CDS | 50.0% |
| !! | GGACCTGATGGACTTGGATT+AGG | + | chr1.2:29280897-29280916 | MS.gene53604:CDS | 50.0% |
| CCATCAGTAGCAACCTGTCC+AGG | - | chr1.2:29281206-29281225 | None:intergenic | 55.0% | |
| CCTGGACAGGTTGCTACTGA+TGG | + | chr1.2:29281203-29281222 | MS.gene53604:CDS | 55.0% | |
| GTACCCTTTGCAACCCCAGT+TGG | + | chr1.2:29280714-29280733 | MS.gene53604:CDS | 55.0% | |
| TCAGTAGCAACCTGTCCAGG+TGG | - | chr1.2:29281203-29281222 | None:intergenic | 55.0% | |
| ! | CGCGATTGTCGGTTGTAGGA+GGG | + | chr1.2:29281126-29281145 | MS.gene53604:CDS | 55.0% |
| ! | TCGCGATTGTCGGTTGTAGG+AGG | + | chr1.2:29281125-29281144 | MS.gene53604:CDS | 55.0% |
| ! | TTGTCGGTTGTAGGAGGGAC+GGG | + | chr1.2:29281131-29281150 | MS.gene53604:CDS | 55.0% |
| TTGCCGAGCAAACCGGTCAC+TGG | - | chr1.2:29280678-29280697 | None:intergenic | 60.0% | |
| ! | TGTCGGTTGTAGGAGGGACG+GGG | + | chr1.2:29281132-29281151 | MS.gene53604:CDS | 60.0% |
| !! | CGACCAGTGACCGGTTTGCT+CGG | + | chr1.2:29280672-29280691 | MS.gene53604:CDS | 60.0% |
| CCAACGGCTCGACCAGTGAC+CGG | + | chr1.2:29280663-29280682 | MS.gene53604:CDS | 65.0% | |
| CGGTCACTGGTCGAGCCGTT+GGG | - | chr1.2:29280665-29280684 | None:intergenic | 65.0% | |
| CCGGTCACTGGTCGAGCCGT+TGG | - | chr1.2:29280666-29280685 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 29280558 | 29281268 | 29280558 | ID=MS.gene53604 |
| chr1.2 | mRNA | 29280558 | 29281268 | 29280558 | ID=MS.gene53604.t1;Parent=MS.gene53604 |
| chr1.2 | exon | 29280558 | 29281268 | 29280558 | ID=MS.gene53604.t1.exon1;Parent=MS.gene53604.t1 |
| chr1.2 | CDS | 29280558 | 29281268 | 29280558 | ID=cds.MS.gene53604.t1;Parent=MS.gene53604.t1 |
| Gene Sequence |
| Protein sequence |