AlfalfaGEDB | MS.gene054146

M. sativa cultivar XinJiangDaYe / MS.gene054146

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0016043 GO:0051179 GO:0051234 GO:0061024 GO:0071702 GO:0071840 GO:0110165 GO:0120009 GO:0120013
PFAM: PF08718.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054146.t1	XP_013466398.1	95.8	216	8	1	1	215	8	223	7.10E-109	403.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054146.t1	Q9LU33	52.8	218	98	1	2	214	15	232	8.4e-58	224.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054146.t1	A0A072VEL1	95.8	216	8	1	1	215	8	223	5.1e-109	403.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene054146	0.812195	4.79E-51	-1.69E-46
MS.gene049549	MS.gene054146	0.874642	5.76E-68	-1.69E-46
MS.gene049813	MS.gene054146	0.807609	4.65E-50	-1.69E-46
MS.gene050095	MS.gene054146	0.812945	3.28E-51	-1.69E-46
MS.gene051131	MS.gene054146	0.835341	1.78E-56	-1.69E-46
MS.gene051844	MS.gene054146	0.801513	8.69E-49	-1.69E-46
MS.gene052211	MS.gene054146	0.886846	2.40E-72	-1.69E-46
MS.gene052212	MS.gene054146	0.859592	3.72E-63	-1.69E-46
MS.gene05240	MS.gene054146	0.842383	2.67E-58	-1.69E-46
MS.gene052606	MS.gene054146	0.836664	8.19E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054146.t1	MTR_1g028960	95.833	216	8	1	1	215	8	223	3.16e-151	419
MS.gene054146.t1	MTR_1g028970	92.093	215	17	0	1	215	9	223	7.56e-145	402
MS.gene054146.t1	MTR_1g028970	92.647	204	15	0	1	204	9	212	8.20e-138	385
MS.gene054146.t1	MTR_3g090530	68.981	216	66	1	1	215	7	222	4.81e-109	312
MS.gene054146.t1	MTR_1g028970	92.357	157	12	0	1	157	9	165	8.49e-104	297
MS.gene054146.t1	MTR_3g090530	69.268	205	62	1	1	204	7	211	2.25e-102	295
MS.gene054146.t1	MTR_3g090530	68.987	158	48	1	1	157	7	164	5.81e-77	229
MS.gene054146.t1	MTR_3g090530	67.550	151	48	1	66	215	7	157	9.45e-72	215
MS.gene054146.t1	MTR_3g090530	67.857	140	44	1	66	204	7	146	2.39e-65	199
MS.gene054146.t1	MTR_3g090530	66.667	93	30	1	66	157	7	99	1.59e-39	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054146.t1	AT1G21360	52.582	213	100	1	2	214	11	222	4.56e-77	231
MS.gene054146.t1	AT3G21260	52.752	218	98	1	2	214	15	232	1.87e-70	214
MS.gene054146.t1	AT1G21360	57.051	156	66	1	2	157	11	165	6.38e-59	184
MS.gene054146.t1	AT1G21360	50.625	160	79	0	55	214	1	160	3.86e-53	168
MS.gene054146.t1	AT3G21260	53.741	147	68	0	68	214	2	148	1.48e-45	148
MS.gene054146.t1	AT3G21260	53.147	143	67	0	72	214	1	143	7.09e-44	144
MS.gene054146.t1	AT2G33470	33.702	181	116	1	35	215	26	202	6.18e-35	123
MS.gene054146.t1	AT2G33470	33.702	181	116	1	35	215	26	202	6.18e-35	123

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Find 37 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCTGAAAAGAAAA+TGG	0.298748	1.3:+15023599	MS.gene054146:CDS
AAATAACATATAGAGAGGAA+AGG	0.630937	1.3:-15021752	None:intergenic
AACAGAAGGCAATGCAAAGA+AGG	0.452284	1.3:+15023362	MS.gene054146:CDS
ACAACGACGAGGTGAAATCC+AGG	0.531035	1.3:-15023563	None:intergenic
ACAGAAGGCAATGCAAAGAA+GGG	0.552195	1.3:+15023363	MS.gene054146:CDS
ACTAAATTTAGATTTGTTGT+TGG	0.392467	1.3:-15023318	None:intergenic
AGATAAAATAGGGCCAACAA+TGG	0.630676	1.3:+15021923	MS.gene054146:intron
AGATGTGTATCAAAATATCA+AGG	0.576462	1.3:+15021959	MS.gene054146:CDS
AGGCCTTTGTTTGGCTCACA+AGG	0.523024	1.3:+15023400	MS.gene054146:CDS
ATAGAGAGGAAAGGCTTAAT+GGG	0.342416	1.3:-15021743	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGTGCGAGAAAAAAAT+TGG	-	chr1.3:15022967-15022986	None:intergenic	30.0%
AATATATATTGCGTTTCAGG+TGG	+	chr1.3:15023921-15023940	MS.gene054146:intron	30.0%
AATGGTGTGTAATTAAGGAA+AGG	+	chr1.3:15022402-15022421	MS.gene054146:intron	30.0%
ATTACATTAAAACCATGGCA+TGG	+	chr1.3:15023648-15023667	MS.gene054146:CDS	30.0%
CAAAACAAATACACACACAT+AGG	-	chr1.3:15024171-15024190	None:intergenic	30.0%
CAAAGATAAGACACATGTTA+AGG	-	chr1.3:15022920-15022939	None:intergenic	30.0%
CTTAACATGTGTCTTATCTT+TGG	+	chr1.3:15022918-15022937	MS.gene054146:intron	30.0%
GAACCAAATAACATATAGAG+AGG	-	chr1.3:15021760-15021779	None:intergenic	30.0%
AGATAAAATAGGGCCAACAA+TGG	+	chr1.3:15021923-15021942	MS.gene054146:intron	35.0%
AGTAAGTTGTAGGACACAAA+AGG	-	chr1.3:15022156-15022175	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	15021647	15024229	15021647	ID=MS.gene054146
chr1.3	mRNA	15021647	15024229	15021647	ID=MS.gene054146.t1;Parent=MS.gene054146
chr1.3	exon	15021647	15021791	15021647	ID=MS.gene054146.t1.exon1;Parent=MS.gene054146.t1
chr1.3	CDS	15021647	15021791	15021647	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1
chr1.3	exon	15021925	15021980	15021925	ID=MS.gene054146.t1.exon2;Parent=MS.gene054146.t1
chr1.3	CDS	15021925	15021980	15021925	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1
chr1.3	exon	15023291	15023421	15023291	ID=MS.gene054146.t1.exon3;Parent=MS.gene054146.t1
chr1.3	CDS	15023291	15023421	15023291	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1
chr1.3	exon	15023560	15023695	15023560	ID=MS.gene054146.t1.exon4;Parent=MS.gene054146.t1
chr1.3	CDS	15023560	15023695	15023560	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1
chr1.3	exon	15023940	15024083	15023940	ID=MS.gene054146.t1.exon5;Parent=MS.gene054146.t1
chr1.3	CDS	15023940	15024083	15023940	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1
chr1.3	exon	15024194	15024229	15024194	ID=MS.gene054146.t1.exon6;Parent=MS.gene054146.t1
chr1.3	CDS	15024194	15024229	15024194	ID=cds.MS.gene054146.t1;Parent=MS.gene054146.t1

Gene Sequence

>MS.gene054146

ATGGAGAAGAAATCAGAGATAAGTTGTTTTATTGAAGAGCTTTCTGTGGTTGTGATAGTTAAACCTTCTGGAGAAAATCTTGAAGCTGCTCATATCCCCATTAAGCCTTTCCTCTCTATATGTTATTTGGTTCTACAAGTTCTTGGTACGTTTTGTTACTTCAAATCTTAATTTCATTATTATTGTTCAAATTTTGATGTGAGTAACATCTATATAAATTCATTATAATTCCTCAAAAAAAACAAAACATCTATATTAAATGTGTCTAATAATTACAGATAAAATAGGGCCAACAATGGCTGTTTTGAGACAAGATGTGTATCAAAATATCAAGGTACAAAGAAAATCTATATCTGAAAACTTTCAATTCAGCTTATTACTTGATTATACTAACCACCCATTTAACCCTTCTCTTATTATAATTTTGTTTTTTAATAGACTGATTAAATGTTAGTGATGAATGATGTTAGTTATTAGGGTTTGAACCTTGGATTTTTAGGTAGTACCCTTTTGTGTCCTACAACTTACTGCTTGACACTAACATAATTAATATAAGTAATCCAAGTAGTTATTAGATTAATAGACATCATAACTACAATTGGGATTACACTTTTCTCCAATAGTTAAAATTATGGTTGATTTAGTATATATACCTTTTTAAGCATTGCTATTTATCTAGAGAGTTTTTATCAAGAATTTATCAAGAAAATGTCTCAACCAATAAAATTTGTTATTTGGCGGAAATCAAGGGAGGTAATGGTGTGTAATTAAGGAAAGGTGTTAACAAATACACTGTCTTGAAATTTTCTTGATAAATTTTGTCACTGTATCTATCATTTCTCATACACCTTTTAATAATTTGAGTAGCTTGAATTCTTCAGTTCAATACGAAATTGAATGTTTTTAGGGCACATGTTATGTTTTTAGGGCACATGTTTCAAAATACATGTCCAAGTCAACCATTTCACATATGCCCATGCACAATTTTGACCGTTAATATCTTTAATTATCTAAAGTAAAAAATTATAAAAATTTAATATTTTGAAAATATTTGTCGAGACAAGTCGTCAAACAACATCTTACATGCTAATATTTGTATTTATACATTAGTTAAAAAGTATGGTCAAAGTAAGTCAAGTGAATAGTGCATATTGCAAAAATTGGACATGTATTTTGAAACGGAGGAAGTATTATTTATTGAAGAAAAAAAAGTAACTTTCAATCTTTTTTGAAATAAATTAGCACATTTTCCTATACAAATTTTTTTATACCTTAACATGTGTCTTATCTTTGGCACATGTTACTACGTTAACATTTCCAATTTTTTTCTCGCACACTTTTTCTACATGCTCCATTGATCTAAGTTTGTAGATTGATCAATGTCGTAGATTTCAATAACATAATTTTAACATAAAGTTTTTCTGCTTGATAAGAAGAAATTTAACATAAAGGGTTAACTTAAGGGTTATAAGTTAGGTGGTTATACTTCTTTTTTCATTATAATATGGGGATTGTTTTTGTGTCGGACGGGATATTTTGTAGATTTAATATATTATATGACTTTCATTGTGTACATTTTTTAAAATATTGATGATTTGTCAACTACCAATGATTAGTTGTGTATTAAATTCCGTTTGATTGCAGAGATTGGAACTAATGCATGAATCAAATCCAACAACAAATCTAAATTTAGTTGAAATATTGAAATTGGAAGCAACAGAAGGCAATGCAAAGAAGGGGTCTAGCTGCAGTAAGGCCTTTGTTTGGCTCACAAGGTGATATACCTATAATAATATAATAACACCTAATAATAATACTTCTCTAATTTTTATATAATATAAAGTGAAAAATTATTGAAGAAATTTATAAATAGGTATCATCTTATAATTTATGGTGCTGCATATATTCTGCAGGACCCTGGATTTCACCTCGTCGTTGTTACAAATACTATCAAAAGATCCTGAAAAGAAAATGGAGAAAGTAGTTGAAGAATCTTATGAAATTACATTAAAACCATGGCATGGATGGATTTCATCAACTGCTGTTAGAGTACTAATCACGTTTTCTTTATTTTCTTCTATTTTTCAATTAGTATTTCATGCTATTAGATGGACTTTGCATGCTAGTTTACTTTTGCAAATCAAATTTTATTCATTAATTAACATGTTCTATTTTTATAAAATATTTAGGATTCTGATTTTTACTTCAAACAAAACTTGCAACAAAGTTACGTTTTAATTTTTTGCAAATTTGCATATGATAGGAAAAACCCTAAATATATATTGCGTTTCAGGTGGCTCTAAGATTAGTTCCGGAAAGTAAAACATTCATTGATCTTCTTAAGACTGAAGATGAAGACCGTGACATGCTTAAGCAGAAAATGCAAATATTGGTTTCTCTACTTGTGCCTTTTCTTGAGGATATCCATTGTATCCTAGTAAGCTTTGTTTATCAATTGGTCAAGAAAACTCCCTAAATATTGCAAACTTTACCTTATGTGTGTATATTTTTTTGAAGGAACCCTATGTGTGTGTATTTGTTTTGCAGAGATTATATAACTTGGACAAGCTGAAATCAACATGA

Protein sequence

>MS.gene054146.t1

MEKKSEISCFIEELSVVVIVKPSGENLEAAHIPIKPFLSICYLVLQVLDKIGPTMAVLRQDVYQNIKRLELMHESNPTTNLNLVEILKLEATEGNAKKGSSCSKAFVWLTRTLDFTSSLLQILSKDPEKKMEKVVEESYEITLKPWHGWISSTAVRVALRLVPESKTFIDLLKTEDEDRDMLKQKMQILVSLLVPFLEDIHCILRLYNLDKLKST