AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53680.t1 MTR_1g047390 51.852 81 16 1 1 81 110 167 1.48e-16 76.3
MS.gene53680.t1 MTR_6g076210 45.946 111 50 2 127 231 47 153 1.01e-15 74.7
MS.gene53680.t1 MTR_5g078200 63.793 58 21 0 140 197 585 642 2.44e-15 75.5
MS.gene53680.t1 MTR_5g078200 63.793 58 21 0 140 197 552 609 2.83e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 48 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTCTAATCACAAATATT+TGG 0.121525 1.3:+29019965 None:intergenic
GCAAGAGGACCCAATGATTT+TGG 0.178011 1.3:-29021702 MS.gene53680:CDS
CTTTGAACTTCTAAAGGAAT+TGG 0.261376 1.3:-29020499 MS.gene53680:CDS
TGTTTCATCAACCATTGATT+TGG 0.275813 1.3:-29020336 MS.gene53680:CDS
AACAGACAAGCGTCCTGTTT+TGG 0.293719 1.3:-29020231 MS.gene53680:CDS
ACAACCTTTGGCAAGTGATA+TGG 0.301297 1.3:-29020541 MS.gene53680:CDS
TCCTCTAATCACAAATATTT+GGG 0.313396 1.3:+29019966 None:intergenic
AAATCATTGGGTCCTCTTGC+AGG 0.318605 1.3:+29021705 None:intergenic
GATTTGGATCCTAGTTTGTC+TGG 0.350184 1.3:-29020320 MS.gene53680:CDS
CATACAAACTCATTCCATAA+AGG 0.378657 1.3:-29020006 MS.gene53680:CDS
AAATTCCTTTGAACTTCTAA+AGG 0.398636 1.3:-29020505 MS.gene53680:CDS
GGGATCCCATCCAAAATCAT+TGG 0.403416 1.3:+29021692 None:intergenic
GGATCCTAGTTTGTCTGGTA+TGG 0.416355 1.3:-29020315 MS.gene53680:CDS
GAGGTGTGTTTAGTAGTGAT+AGG 0.441053 1.3:+29020260 None:intergenic
ACTTGTCCTTGGAAGTTGCT+AGG 0.444961 1.3:-29020702 MS.gene53680:CDS
CTTGGAATAAGAACAACCTT+TGG 0.445689 1.3:-29020553 MS.gene53680:intron
AAGTGATATGGCTTTGCCTT+TGG 0.448196 1.3:-29020529 MS.gene53680:CDS
ATACAAACTCATTCCATAAA+GGG 0.452247 1.3:-29020005 MS.gene53680:CDS
TAATCACAAATATTTGGGAT+TGG 0.456371 1.3:+29019971 None:intergenic
TACGTTTGATCATCGCCATC+AGG 0.459632 1.3:+29021660 None:intergenic
TGGTTTCCATGACTTGTCCT+TGG 0.460660 1.3:-29020713 MS.gene53680:CDS
GTATTGACATGCTCCAAAAC+AGG 0.462744 1.3:+29020218 None:intergenic
GTTTGTAGCTGCTGTTGGAC+AGG 0.471936 1.3:+29020088 None:intergenic
TGTTTAGTAGTGATAGGTTG+AGG 0.482688 1.3:+29020266 None:intergenic
GGTGTCGTTGATTCCGTCGT+CGG 0.505496 1.3:+29020678 None:intergenic
GGATCCCATCCAAAATCATT+GGG 0.509802 1.3:+29021693 None:intergenic
AATGTGATAGGTTCACTGTC+TGG 0.510552 1.3:+29022059 None:intergenic
CTTGTCCTTGGAAGTTGCTA+GGG 0.510572 1.3:-29020701 MS.gene53680:CDS
CAATTCCTTTAGAAGTTCAA+AGG 0.520981 1.3:+29020500 None:intergenic
ACAATGACCGGTGACTTCTC+AGG 0.532905 1.3:+29020356 None:intergenic
CAAACTAGGATCCAAATCAA+TGG 0.543555 1.3:+29020325 None:intergenic
ATCTGGGGAACACTTAGCGC+TGG 0.554552 1.3:-29020387 MS.gene53680:CDS
CAACTTCCAAGGACAAGTCA+TGG 0.564419 1.3:+29020707 None:intergenic
TTCTGCAGCTCAGAGAAGTG+TGG 0.590327 1.3:-29020168 MS.gene53680:CDS
ATATCCATACCAGACAAACT+AGG 0.591864 1.3:+29020311 None:intergenic
GGGAAGATTGTTCCTGCAAG+AGG 0.597623 1.3:-29021717 MS.gene53680:CDS
ATAGGTTGAGGCATAACAGA+TGG 0.616432 1.3:+29020278 None:intergenic
CCAAAGCCTTACCATCTGCA+AGG 0.619926 1.3:+29020472 None:intergenic
GAATTGGAAAACCTTGCAGA+TGG 0.620967 1.3:-29020483 MS.gene53680:intron
TCTTCAGTGGTGGTTCCTCG+TGG 0.621632 1.3:-29020733 MS.gene53680:intron
ACGCTTGTCTGTTGTCAGAG+AGG 0.635965 1.3:+29020241 None:intergenic
TAACTTACCTGAGAAGTCAC+CGG 0.637081 1.3:-29020363 MS.gene53680:CDS
GTCGGCCCTAGCAACTTCCA+AGG 0.640990 1.3:+29020696 None:intergenic
ACTGTCTGGACCAATTGCAA+AGG 0.643076 1.3:+29022073 None:intergenic
ATGGTTGATGAAACAATGAC+CGG 0.657305 1.3:+29020344 None:intergenic
GAAGTTGCTAGGGCCGACGA+CGG 0.663334 1.3:-29020691 MS.gene53680:CDS
AAAGCCATATCACTTGCCAA+AGG 0.683223 1.3:+29020537 None:intergenic
GACAAGTCATGGAAACCACG+AGG 0.767456 1.3:+29020718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTTTTTTTTTTTAGA+GGG + chr1.3:29020831-29020850 None:intergenic 10.0%
!!! TTGATTTTTTTTTTTTTTAG+AGG + chr1.3:29020832-29020851 None:intergenic 10.0%
!! AAAATAAACCTTCATAAAAA+AGG + chr1.3:29020952-29020971 None:intergenic 15.0%
!! AAATAAACCTTCATAAAAAA+GGG + chr1.3:29020951-29020970 None:intergenic 15.0%
!! ACTAATATATTAATTATGGA+GGG - chr1.3:29021061-29021080 MS.gene53680:intron 15.0%
!! TACTAATATATTAATTATGG+AGG - chr1.3:29021060-29021079 MS.gene53680:intron 15.0%
!! TCTATCTATTAATTATGTTT+CGG - chr1.3:29021094-29021113 MS.gene53680:intron 15.0%
!!! TTTTCGTATTTTTTTCAATT+TGG + chr1.3:29021303-29021322 None:intergenic 15.0%
!! AAGAAAATGACTTGAAATAA+AGG + chr1.3:29020463-29020482 None:intergenic 20.0%
!! ATTTACATGTTAATATTGTG+AGG - chr1.3:29020132-29020151 MS.gene53680:CDS 20.0%
!! CTAATATATTAATTATGGAG+GGG - chr1.3:29021062-29021081 MS.gene53680:intron 20.0%
!! TAAAAGTCAGGTTAAATATA+AGG + chr1.3:29020314-29020333 None:intergenic 20.0%
!!! AATTTTGTTCTTTTCTTCTT+TGG + chr1.3:29020557-29020576 None:intergenic 20.0%
!!! TATGCATACATAATTGTTTT+TGG + chr1.3:29020101-29020120 None:intergenic 20.0%
!!! TCAATGAGTAAATTTTATGA+CGG - chr1.3:29020160-29020179 MS.gene53680:CDS 20.0%
!!! TTTTTCCAAAAAGCAAAAAT+TGG + chr1.3:29021012-29021031 None:intergenic 20.0%
! AAATTCCTTTGAACTTCTAA+AGG - chr1.3:29021585-29021604 MS.gene53680:intron 25.0%
! AACAGAACTCAGATTAAAAA+CGG + chr1.3:29020076-29020095 None:intergenic 25.0%
! ACAATTGTATTTATGCATAG+AGG - chr1.3:29020530-29020549 MS.gene53680:CDS 25.0%
! ACATTATCTGTTGTGTTTAT+TGG + chr1.3:29021496-29021515 None:intergenic 25.0%
! ATACAAACTCATTCCATAAA+GGG - chr1.3:29022085-29022104 MS.gene53680:CDS 25.0%
! CTTCGATAAGCTAAATATAA+AGG - chr1.3:29021450-29021469 MS.gene53680:intron 25.0%
! CTTTACTTAGTTTCAACTTA+AGG + chr1.3:29021125-29021144 None:intergenic 25.0%
! TGCGTTAAAGATTAAATAGT+TGG - chr1.3:29020247-29020266 MS.gene53680:CDS 25.0%
! TTGGAAAAAGTTAAAATGCA+GGG - chr1.3:29021023-29021042 MS.gene53680:intron 25.0%
! TTGTGTGTGTGTATATATAT+GGG - chr1.3:29020906-29020925 MS.gene53680:intron 25.0%
! TTTGGAAAAAGTTAAAATGC+AGG - chr1.3:29021022-29021041 MS.gene53680:intron 25.0%
! TTTGTGTGTGTGTATATATA+TGG - chr1.3:29020905-29020924 MS.gene53680:intron 25.0%
!! AAGAATAACACGTTTTTACA+AGG + chr1.3:29020210-29020229 None:intergenic 25.0%
!! AGAATAACACGTTTTTACAA+GGG + chr1.3:29020209-29020228 None:intergenic 25.0%
!! CTTTATATTTAGCTTATCGA+AGG + chr1.3:29021452-29021471 None:intergenic 25.0%
!! GACATTTTACAAAAGTTTTG+GGG - chr1.3:29021944-29021963 MS.gene53680:intron 25.0%
!! GGACATTTTACAAAAGTTTT+GGG - chr1.3:29021943-29021962 MS.gene53680:intron 25.0%
!! TAACTCATTTTATGCTTGTA+TGG - chr1.3:29020348-29020367 MS.gene53680:CDS 25.0%
!! TAACTGATTCCAAAATTTCA+AGG + chr1.3:29020701-29020720 None:intergenic 25.0%
!! TAACTGTTTGACCTTTTTAT+AGG - chr1.3:29021677-29021696 MS.gene53680:CDS 25.0%
!! TCATTTTGCATATTTAAGCT+TGG - chr1.3:29020770-29020789 MS.gene53680:intron 25.0%
!! TGGACATTTTACAAAAGTTT+TGG - chr1.3:29021942-29021961 MS.gene53680:intron 25.0%
!!! AACAACCAATTTTTGCTTTT+TGG - chr1.3:29021004-29021023 MS.gene53680:intron 25.0%
!!! ACATTTTACAAAAGTTTTGG+GGG - chr1.3:29021945-29021964 MS.gene53680:intron 25.0%
CATACAAACTCATTCCATAA+AGG - chr1.3:29022084-29022103 MS.gene53680:CDS 30.0%
CGATAAGCTAAATATAAAGG+TGG - chr1.3:29021453-29021472 MS.gene53680:intron 30.0%
TAATCTTTAACGCACTAGTT+CGG + chr1.3:29020241-29020260 None:intergenic 30.0%
TCAGTTAAACGTAAGAATGT+CGG - chr1.3:29020714-29020733 MS.gene53680:CDS 30.0%
TTAGCTCATGCAAATAACTA+TGG + chr1.3:29020495-29020514 None:intergenic 30.0%
! ACAGACATTCCTTGAAATTT+TGG - chr1.3:29020689-29020708 MS.gene53680:CDS 30.0%
! ACCTTTTTATAGGTTCATCT+GGG - chr1.3:29021687-29021706 MS.gene53680:CDS 30.0%
! AGTTCAAAGGAATTTTCCAA+AGG + chr1.3:29021580-29021599 None:intergenic 30.0%
! CAATTCCTTTAGAAGTTCAA+AGG + chr1.3:29021593-29021612 None:intergenic 30.0%
! CATTTTATGCTTGTATGGTA+GGG - chr1.3:29020353-29020372 MS.gene53680:CDS 30.0%
! CTTTGAACTTCTAAAGGAAT+TGG - chr1.3:29021591-29021610 MS.gene53680:intron 30.0%
! GTTTTTCCTGAAAATGTGAT+AGG + chr1.3:29020046-29020065 None:intergenic 30.0%
! TCATTTTATGCTTGTATGGT+AGG - chr1.3:29020352-29020371 MS.gene53680:CDS 30.0%
! TGTGTATTTTCCTTTGCAAT+TGG - chr1.3:29020007-29020026 MS.gene53680:CDS 30.0%
! TGTTTCATCAACCATTGATT+TGG - chr1.3:29021754-29021773 MS.gene53680:intron 30.0%
!!! AGAAACACCCTTTTTTATGA+AGG - chr1.3:29020941-29020960 MS.gene53680:intron 30.0%
!!! CATTTTACAAAAGTTTTGGG+GGG - chr1.3:29021946-29021965 MS.gene53680:intron 30.0%
AACAATACACAGTGATGTTG+AGG + chr1.3:29021269-29021288 None:intergenic 35.0%
AACAGATAATGTCCCTGATA+TGG - chr1.3:29021504-29021523 MS.gene53680:intron 35.0%
ACGCATCTTTCAGATTTGAA+AGG + chr1.3:29020638-29020657 None:intergenic 35.0%
ATATCCATACCAGACAAACT+AGG + chr1.3:29021782-29021801 None:intergenic 35.0%
ATTTCAAGGAATGTCTGTCT+AGG + chr1.3:29020687-29020706 None:intergenic 35.0%
CAAACTAGGATCCAAATCAA+TGG + chr1.3:29021768-29021787 None:intergenic 35.0%
CAACATCACTGTGTATTGTT+TGG - chr1.3:29021269-29021288 MS.gene53680:intron 35.0%
CATCACTCATCATAAAAGTC+AGG + chr1.3:29020326-29020345 None:intergenic 35.0%
CTATGTTTCTTCTCTTGCAT+TGG + chr1.3:29021160-29021179 None:intergenic 35.0%
CTTGGAATAAGAACAACCTT+TGG - chr1.3:29021537-29021556 MS.gene53680:intron 35.0%
TCTGTTGTGTTTATTGGTAC+AGG + chr1.3:29021490-29021509 None:intergenic 35.0%
TGTTTAGTAGTGATAGGTTG+AGG + chr1.3:29021827-29021846 None:intergenic 35.0%
TTTCAAATCTGAAAGATGCG+TGG - chr1.3:29020637-29020656 MS.gene53680:intron 35.0%
! AAATCACATTTTGCTGAAGC+TGG - chr1.3:29020607-29020626 MS.gene53680:intron 35.0%
! AGCATGCTACACTTTTCATT+TGG - chr1.3:29020978-29020997 MS.gene53680:intron 35.0%
! AGTGAACCTATCACATTTTC+AGG - chr1.3:29020037-29020056 MS.gene53680:CDS 35.0%
! CCTTTTTATAGGTTCATCTG+GGG - chr1.3:29021688-29021707 MS.gene53680:CDS 35.0%
! CTACTTGGTGGTAACTTTAT+TGG + chr1.3:29021239-29021258 None:intergenic 35.0%
! GACCTTTTTATAGGTTCATC+TGG - chr1.3:29021686-29021705 MS.gene53680:CDS 35.0%
! TCGAAGGAGTTTTCAACTTT+CGG + chr1.3:29021436-29021455 None:intergenic 35.0%
!! ATGGTTGATGAAACAATGAC+CGG + chr1.3:29021749-29021768 None:intergenic 35.0%
!! CACATTTTCAGGAAAAACAC+TGG - chr1.3:29020048-29020067 MS.gene53680:CDS 35.0%
!! TTTTTGTTTGTAGCTGCTGT+TGG + chr1.3:29022010-29022029 None:intergenic 35.0%
!!! CTCACTACTTGTGTTTTTTG+GGG + chr1.3:29022062-29022081 None:intergenic 35.0%
!!! GCTCACTACTTGTGTTTTTT+GGG + chr1.3:29022063-29022082 None:intergenic 35.0%
!!! TGCTCACTACTTGTGTTTTT+TGG + chr1.3:29022064-29022083 None:intergenic 35.0%
AAAAGGTCAAACAGTTAGCG+TGG + chr1.3:29021674-29021693 None:intergenic 40.0%
AAAGCCATATCACTTGCCAA+AGG + chr1.3:29021556-29021575 None:intergenic 40.0%
AAGACTGAGAACACCATATC+AGG + chr1.3:29021520-29021539 None:intergenic 40.0%
AAGTTACCACCAAGTAGTCA+TGG - chr1.3:29021242-29021261 MS.gene53680:intron 40.0%
AATGTGATAGGTTCACTGTC+TGG + chr1.3:29020034-29020053 None:intergenic 40.0%
ACAACCTTTGGCAAGTGATA+TGG - chr1.3:29021549-29021568 MS.gene53680:intron 40.0%
AGACTGAGAACACCATATCA+GGG + chr1.3:29021519-29021538 None:intergenic 40.0%
CACTGAAGAGAAGAAAAGCT+TGG + chr1.3:29021346-29021365 None:intergenic 40.0%
CCCCAGATGAACCTATAAAA+AGG + chr1.3:29021691-29021710 None:intergenic 40.0%
GAATTGGAAAACCTTGCAGA+TGG - chr1.3:29021607-29021626 MS.gene53680:intron 40.0%
GAGGTGTGTTTAGTAGTGAT+AGG + chr1.3:29021833-29021852 None:intergenic 40.0%
GGATCCCATCCAAAATCATT+GGG + chr1.3:29020400-29020419 None:intergenic 40.0%
GTTTCTTCTCTTGCATTGGA+TGG + chr1.3:29021156-29021175 None:intergenic 40.0%
TAACTTACCTGAGAAGTCAC+CGG - chr1.3:29021727-29021746 MS.gene53680:intron 40.0%
TGAAGAGAAGAAAAGCTTGG+AGG + chr1.3:29021343-29021362 None:intergenic 40.0%
TGATATGGTGTTCTCAGTCT+TGG - chr1.3:29021519-29021538 MS.gene53680:intron 40.0%
TGGCACGTCTGTAAAACAAT+AGG - chr1.3:29020267-29020286 MS.gene53680:CDS 40.0%
TTTATTGGTACAGGAGTTGC+AGG + chr1.3:29021481-29021500 None:intergenic 40.0%
! AAGTGATATGGCTTTGCCTT+TGG - chr1.3:29021561-29021580 MS.gene53680:intron 40.0%
! AGGACCCAATGATTTTGGAT+GGG - chr1.3:29020393-29020412 MS.gene53680:CDS 40.0%
! ATAGGTTGAGGCATAACAGA+TGG + chr1.3:29021815-29021834 None:intergenic 40.0%
! CAAGCTTTTCTTCTCTTCAG+TGG - chr1.3:29021344-29021363 MS.gene53680:intron 40.0%
! GAGGGTACGTTTGAATATGT+TGG + chr1.3:29020813-29020832 None:intergenic 40.0%
! GATTTGGATCCTAGTTTGTC+TGG - chr1.3:29021770-29021789 MS.gene53680:intron 40.0%
! GTATTGACATGCTCCAAAAC+AGG + chr1.3:29021875-29021894 None:intergenic 40.0%
!! ATCGCCATCAGGTTGAAAAA+TGG + chr1.3:29020422-29020441 None:intergenic 40.0%
!! GATCCCATTTTTCAACCTGA+TGG - chr1.3:29020415-29020434 MS.gene53680:intron 40.0%
!! TCGCCATCAGGTTGAAAAAT+GGG + chr1.3:29020421-29020440 None:intergenic 40.0%
!!! GGTTTTGACTACACCCTTTA+TGG + chr1.3:29022101-29022120 None:intergenic 40.0%
AAATCATTGGGTCCTCTTGC+AGG + chr1.3:29020388-29020407 None:intergenic 45.0%
ACTGTCTGGACCAATTGCAA+AGG + chr1.3:29020020-29020039 None:intergenic 45.0%
ACTTGTCCTTGGAAGTTGCT+AGG - chr1.3:29021388-29021407 MS.gene53680:intron 45.0%
CAACTTCCAAGGACAAGTCA+TGG + chr1.3:29021386-29021405 None:intergenic 45.0%
CAAGTGCAAGAGATTTGCAG+CGG + chr1.3:29020585-29020604 None:intergenic 45.0%
CTTGTCCTTGGAAGTTGCTA+GGG - chr1.3:29021389-29021408 MS.gene53680:intron 45.0%
GGAAAACCTTGCAGATGGTA+AGG - chr1.3:29021612-29021631 MS.gene53680:intron 45.0%
GGGATCCCATCCAAAATCAT+TGG + chr1.3:29020401-29020420 None:intergenic 45.0%
GGTTGAAGATTTGCAACCTG+TGG - chr1.3:29021639-29021658 MS.gene53680:intron 45.0%
TACGTTTGATCATCGCCATC+AGG + chr1.3:29020433-29020452 None:intergenic 45.0%
TGAAGATTTGCAACCTGTGG+CGG - chr1.3:29021642-29021661 MS.gene53680:intron 45.0%
TGTTGAGGACCATGACTACT+TGG + chr1.3:29021254-29021273 None:intergenic 45.0%
TTGGGGGGATTATACTACTG+AGG - chr1.3:29021961-29021980 MS.gene53680:intron 45.0%
TTTAACGCACTAGTTCGGTC+AGG + chr1.3:29020236-29020255 None:intergenic 45.0%
! AACAGACAAGCGTCCTGTTT+TGG - chr1.3:29021859-29021878 MS.gene53680:intron 45.0%
! GAGGACCCAATGATTTTGGA+TGG - chr1.3:29020392-29020411 MS.gene53680:CDS 45.0%
! GCAAGAGGACCCAATGATTT+TGG - chr1.3:29020388-29020407 MS.gene53680:CDS 45.0%
! GCTTTTCTTCTCTTCAGTGG+TGG - chr1.3:29021347-29021366 MS.gene53680:intron 45.0%
! GGATCCTAGTTTGTCTGGTA+TGG - chr1.3:29021775-29021794 MS.gene53680:intron 45.0%
! TGGTTTCCATGACTTGTCCT+TGG - chr1.3:29021377-29021396 MS.gene53680:intron 45.0%
!! ATTTACTAATATATTAATTA+TGG - chr1.3:29021057-29021076 MS.gene53680:intron 5.0%
ACAATGACCGGTGACTTCTC+AGG + chr1.3:29021737-29021756 None:intergenic 50.0%
ACGCTTGTCTGTTGTCAGAG+AGG + chr1.3:29021852-29021871 None:intergenic 50.0%
CCAAAGCCTTACCATCTGCA+AGG + chr1.3:29021621-29021640 None:intergenic 50.0%
CCTTGCAGATGGTAAGGCTT+TGG - chr1.3:29021618-29021637 MS.gene53680:intron 50.0%
GACAAGTCATGGAAACCACG+AGG + chr1.3:29021375-29021394 None:intergenic 50.0%
GGGAAGATTGTTCCTGCAAG+AGG - chr1.3:29020373-29020392 MS.gene53680:CDS 50.0%
GTTTGTAGCTGCTGTTGGAC+AGG + chr1.3:29022005-29022024 None:intergenic 50.0%
TGAGGACCATGACTACTTGG+TGG + chr1.3:29021251-29021270 None:intergenic 50.0%
TTCTGCAGCTCAGAGAAGTG+TGG - chr1.3:29021922-29021941 MS.gene53680:intron 50.0%
ATCTGGGGAACACTTAGCGC+TGG - chr1.3:29021703-29021722 MS.gene53680:CDS 55.0%
TCTTCAGTGGTGGTTCCTCG+TGG - chr1.3:29021357-29021376 MS.gene53680:intron 55.0%
!! GGTGTCGTTGATTCCGTCGT+CGG + chr1.3:29021415-29021434 None:intergenic 55.0%
GAAGTTGCTAGGGCCGACGA+CGG - chr1.3:29021399-29021418 MS.gene53680:intron 60.0%
GTCGGCCCTAGCAACTTCCA+AGG + chr1.3:29021397-29021416 None:intergenic 60.0%
AGCGTGGAGCTTGCCGCCAC+AGG + chr1.3:29021658-29021677 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 29019974 29022138 29019974 ID=MS.gene53680
chr1.3 mRNA 29019974 29022138 29019974 ID=MS.gene53680.t1;Parent=MS.gene53680
chr1.3 exon 29022043 29022138 29022043 ID=MS.gene53680.t1.exon1;Parent=MS.gene53680.t1
chr1.3 CDS 29022043 29022138 29022043 ID=cds.MS.gene53680.t1;Parent=MS.gene53680.t1
chr1.3 exon 29021663 29021738 29021663 ID=MS.gene53680.t1.exon2;Parent=MS.gene53680.t1
chr1.3 CDS 29021663 29021738 29021663 ID=cds.MS.gene53680.t1;Parent=MS.gene53680.t1
chr1.3 exon 29020674 29020748 29020674 ID=MS.gene53680.t1.exon3;Parent=MS.gene53680.t1
chr1.3 CDS 29020674 29020748 29020674 ID=cds.MS.gene53680.t1;Parent=MS.gene53680.t1
chr1.3 exon 29020484 29020564 29020484 ID=MS.gene53680.t1.exon4;Parent=MS.gene53680.t1
chr1.3 CDS 29020484 29020564 29020484 ID=cds.MS.gene53680.t1;Parent=MS.gene53680.t1
chr1.3 exon 29019974 29020413 29019974 ID=MS.gene53680.t1.exon5;Parent=MS.gene53680.t1
chr1.3 CDS 29019974 29020413 29019974 ID=cds.MS.gene53680.t1;Parent=MS.gene53680.t1
Gene Sequence

>MS.gene53680

ATGGCATATGATGATAAATCAGCTTATGCATTATGTGTATTTTCCTTTGCAATTGGTCCAGACAGTGAACCTATCACATTTTCAGGAAAAACACTGGTACCGTTTTTAATCTGAGTTCTGTTTACCAAAAACAATTATGTATGCATATATTTTCTTTGATTTACATGTTAATATTGTGAGGCAAATTCAATGAGTAAATTTTATGACGGAGTCTATGAAAATATATTAGTTTCCCTTGTAAAAACGTGTTATTCTTCGACCTGACCGAACTAGTGCGTTAAAGATTAAATAGTTGGCACGTCTGTAAAACAATAGGATATGCTTTGATCAATTCATACCTTATATTTAACCTGACTTTTATGATGAGTGATGACTAACTCATTTTATGCTTGTATGGTAGGGAAGATTGTTCCTGCAAGAGGACCCAATGATTTTGGATGGGATCCCATTTTTCAACCTGATGGCGATGATCAAACGTATTTCTATCCTTTATTTCAAGTCATTTTCTTTATATGTTTCCATAGTTATTTGCATGAGCTAATTTATTTCATGTATAACAATTGTATTTATGCATAGAGGTCCAAAGAAGAAAAGAACAAAATTTCTCACCGCTGCAAATCTCTTGCACTTGTGAAATCACATTTTGCTGAAGCTGGATATACCTTTCAAATCTGAAAGATGCGTGGTAGACTATAAGTCAGAAGTTGTATCCTAGACAGACATTCCTTGAAATTTTGGAATCAGTTAAACGTAAGAATGTCGGATTAAAATTTGCAAACTTTAGTTTCATTAAATCTCATTTTGCATATTTAAGCTTGGTTAAAAATGTATTAGTTCCAACATATTCAAACGTACCCTCTAAAAAAAAAAAAAATCAAACGTATGTTTGATAAAATATAATTTGTTTGAATGATATTTATTGAAAGTGCTTTTTGTGTGTGTGTATATATATGGGTTTTGCTACAATAGAAACACCCTTTTTTATGAAGGTTTATTTTAGAAATAGCATGCTACACTTTTCATTTGGATCAACAACCAATTTTTGCTTTTTGGAAAAAGTTAAAATGCAGGGACACAACTGTAATTTACTAATATATTAATTATGGAGGGGTCATCTCTTTCTATCTATTAATTATGTTTCGGTCATTCCTTAAGTTGAAACTAAGTAAAGAAAAATATCCATCCAATGCAAGAGAAGAAACATAGCGAAATTTATCTAAAAAAAATTTAAAATATCTGTATTTTTAGACAAACAACAAATACCAATAAAGTTACCACCAAGTAGTCATGGTCCTCAACATCACTGTGTATTGTTTGGTTAATTTACCAAATTGAAAAAAATACGAAAAGATGCTCTGTTTTCTCTCCTCCAAGCTTTTCTTCTCTTCAGTGGTGGTTCCTCGTGGTTTCCATGACTTGTCCTTGGAAGTTGCTAGGGCCGACGACGGAATCAACGACACCGAAAGTTGAAAACTCCTTCGATAAGCTAAATATAAAGGTGGTGCCTGCAACTCCTGTACCAATAAACACAACAGATAATGTCCCTGATATGGTGTTCTCAGTCTTGGAATAAGAACAACCTTTGGCAAGTGATATGGCTTTGCCTTTGGAAAATTCCTTTGAACTTCTAAAGGAATTGGAAAACCTTGCAGATGGTAAGGCTTTGGTTGAAGATTTGCAACCTGTGGCGGCAAGCTCCACGCTAACTGTTTGACCTTTTTATAGGTTCATCTGGGGAACACTTAGCGCTGGCTAACTTACCTGAGAAGTCACCGGTCATTGTTTCATCAACCATTGATTTGGATCCTAGTTTGTCTGGTATGGATATCACTTGCTTGCCATCTGTTATGCCTCAACCTATCACTACTAAACACACCTCTCTGACAACAGACAAGCGTCCTGTTTTGGAGCATGTCAATACAGAAGTGCATTCTGCAGTTGAACTTTCTTCTGCAGCTCAGAGAAGTGTGGACATTTTACAAAAGTTTTGGGGGGATTATACTACTGAGGAACATGAATCTAACTTTGCCTGTCCAACAGCAGCTACAAACAAAAAGAAAAAGAAGCATACAAATATACAAGTTTCCCCAAAAAACACAAGTAGTGAGCACATACAAACTCATTCCATAAAGGGTGTAGTCAAAACCAATCCCAAATATTTGTGA
Protein sequence

>MS.gene53680.t1

MAYDDKSAYALCVFSFAIGPDSEPITFSGKTLGRLFLQEDPMILDGIPFFNLMAMIKLVVPRGFHDLSLEVARADDGINDTEKQPLASDMALPLENSFELLKELENLADGSSGEHLALANLPEKSPVIVSSTIDLDPSLSGMDITCLPSVMPQPITTKHTSLTTDKRPVLEHVNTEVHSAVELSSAAQRSVDILQKFWGDYTTEEHESNFACPTAATNKKKKKHTNIQVSPKNTSSEHIQTHSIKGVVKTNPKYL