Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53787.t1 | XP_003608194.2 | 89.5 | 152 | 16 | 0 | 111 | 262 | 285 | 436 | 1.40E-71 | 279.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53787.t1 | O80874 | 67.1 | 152 | 50 | 0 | 111 | 262 | 250 | 401 | 1.8e-54 | 214.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53787.t1 | G7JQS9 | 89.5 | 152 | 16 | 0 | 111 | 262 | 285 | 436 | 1.0e-71 | 279.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060352 | MS.gene53787 | 0.816875 | 4.41E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53787.t1 | MTR_4g090580 | 89.474 | 152 | 16 | 0 | 111 | 262 | 285 | 436 | 3.21e-92 | 282 |
| MS.gene53787.t1 | MTR_5g071250 | 71.528 | 144 | 41 | 0 | 117 | 260 | 249 | 392 | 5.83e-70 | 221 |
| MS.gene53787.t1 | MTR_5g071250 | 71.233 | 146 | 42 | 0 | 117 | 262 | 249 | 394 | 1.20e-69 | 223 |
| MS.gene53787.t1 | MTR_3g464380 | 71.918 | 146 | 41 | 0 | 117 | 262 | 252 | 397 | 1.67e-68 | 220 |
| MS.gene53787.t1 | MTR_2g046130 | 88.889 | 90 | 10 | 0 | 4 | 93 | 91 | 180 | 3.45e-49 | 169 |
| MS.gene53787.t1 | MTR_4g123880 | 58.889 | 90 | 33 | 2 | 4 | 93 | 90 | 175 | 4.75e-27 | 108 |
| MS.gene53787.t1 | MTR_4g123880 | 58.889 | 90 | 33 | 2 | 4 | 93 | 90 | 175 | 1.07e-26 | 108 |
| MS.gene53787.t1 | MTR_4g091240 | 32.692 | 156 | 95 | 4 | 98 | 243 | 111 | 266 | 3.98e-18 | 83.6 |
| MS.gene53787.t1 | MTR_4g091240 | 32.692 | 156 | 95 | 4 | 98 | 243 | 215 | 370 | 5.45e-18 | 83.6 |
| MS.gene53787.t1 | MTR_2g011730 | 31.210 | 157 | 98 | 4 | 97 | 243 | 214 | 370 | 1.48e-17 | 82.4 |
| MS.gene53787.t1 | MTR_4g045997 | 32.394 | 142 | 87 | 4 | 111 | 243 | 231 | 372 | 9.10e-17 | 80.1 |
| MS.gene53787.t1 | MTR_4g045997 | 32.394 | 142 | 87 | 4 | 111 | 243 | 231 | 372 | 9.13e-17 | 79.7 |
| MS.gene53787.t1 | MTR_4g045993 | 30.556 | 144 | 87 | 5 | 111 | 243 | 223 | 364 | 2.31e-14 | 72.8 |
| MS.gene53787.t1 | MTR_7g111690 | 46.154 | 104 | 45 | 4 | 1 | 93 | 88 | 191 | 8.36e-14 | 71.2 |
| MS.gene53787.t1 | MTR_7g111690 | 46.154 | 104 | 45 | 4 | 1 | 93 | 88 | 191 | 1.13e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53787.t1 | AT2G29990 | 68.493 | 146 | 46 | 0 | 117 | 262 | 256 | 401 | 1.09e-64 | 210 |
| MS.gene53787.t1 | AT1G07180 | 68.493 | 146 | 46 | 0 | 117 | 262 | 258 | 403 | 2.59e-64 | 209 |
| MS.gene53787.t1 | AT4G21490 | 33.094 | 139 | 81 | 5 | 115 | 243 | 235 | 371 | 1.95e-17 | 82.0 |
| MS.gene53787.t1 | AT4G21490 | 33.094 | 139 | 81 | 5 | 115 | 243 | 234 | 370 | 2.20e-17 | 81.6 |
| MS.gene53787.t1 | AT4G28220 | 30.612 | 147 | 93 | 4 | 111 | 248 | 225 | 371 | 3.40e-17 | 81.3 |
| MS.gene53787.t1 | AT4G05020 | 33.094 | 139 | 81 | 5 | 115 | 243 | 237 | 373 | 3.84e-17 | 81.3 |
| MS.gene53787.t1 | AT4G05020 | 33.094 | 139 | 81 | 5 | 115 | 243 | 237 | 373 | 4.22e-17 | 80.9 |
| MS.gene53787.t1 | AT4G28220 | 30.612 | 147 | 93 | 4 | 111 | 248 | 225 | 371 | 5.19e-17 | 80.9 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT5G18500 | 46.154 | 91 | 32 | 4 | 4 | 93 | 88 | 162 | 2.44e-15 | 75.5 |
| MS.gene53787.t1 | AT2G20800 | 32.609 | 138 | 84 | 4 | 115 | 243 | 241 | 378 | 2.27e-14 | 72.8 |
Find 66 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGAACTTACATTATTAT+TGG | 0.176841 | 7.2:-70292358 | MS.gene53787:CDS |
| TATCACTCAAAATTATCTTT+TGG | 0.242168 | 7.2:+70291228 | None:intergenic |
| CTCACCTTGGTTGGGGCCAC+TGG | 0.250309 | 7.2:-70292395 | MS.gene53787:CDS |
| CTGAATTCTCTCACCTTGGT+TGG | 0.252006 | 7.2:-70292404 | MS.gene53787:CDS |
| TCAGGAGCATATCGGCTTAT+AGG | 0.265651 | 7.2:-70292473 | MS.gene53787:CDS |
| GGGCCACTGGTTTGCGTTAA+GGG | 0.281888 | 7.2:-70292382 | MS.gene53787:CDS |
| TGAATTCTCTCACCTTGGTT+GGG | 0.293863 | 7.2:-70292403 | MS.gene53787:CDS |
| GTGACGATAATGGCAGTTTC+AGG | 0.296413 | 7.2:-70292491 | MS.gene53787:CDS |
| TCCGCGTCATCGTCGTGTTC+TGG | 0.310438 | 7.2:-70292432 | MS.gene53787:CDS |
| GGTCTCTTGGTTTGGTCCAC+AGG | 0.327590 | 7.2:-70291188 | MS.gene53787:CDS |
| TTCCTTATGGTCTCTTGGTT+TGG | 0.330810 | 7.2:-70291196 | MS.gene53787:CDS |
| ATTATTGGAGAAGGTGGTTA+TGG | 0.341276 | 7.2:-70292343 | MS.gene53787:CDS |
| GGGGCCACTGGTTTGCGTTA+AGG | 0.349901 | 7.2:-70292383 | MS.gene53787:CDS |
| GATAGAACTAAAGTTCCTTA+TGG | 0.383676 | 7.2:-70291209 | MS.gene53787:CDS |
| AGGCTCATTTAATCGTTTAG+AGG | 0.392019 | 7.2:-70292538 | MS.gene53787:CDS |
| GTCTGGAGTTTGTCTTATGC+GGG | 0.399394 | 7.2:-70291273 | MS.gene53787:CDS |
| GCTTCGTTGCATACTGTTGA+AGG | 0.410285 | 7.2:+70291398 | None:intergenic |
| CAACCAAGGTGAGAGAATTC+AGG | 0.412791 | 7.2:+70292405 | None:intergenic |
| CACGACGATGACGCGGATAT+AGG | 0.414711 | 7.2:+70292438 | None:intergenic |
| TTTGCACTTGGGGATTGTGC+TGG | 0.420564 | 7.2:-70290967 | MS.gene53787:CDS |
| TTGCCTGAATTCTCTCACCT+TGG | 0.422735 | 7.2:-70292408 | MS.gene53787:CDS |
| GAATTCTCTCACCTTGGTTG+GGG | 0.427599 | 7.2:-70292402 | MS.gene53787:CDS |
| TCTCAAGCAGGTGACGATAA+TGG | 0.428212 | 7.2:-70292501 | MS.gene53787:CDS |
| TTGGTTTGGTCCACAGGAGT+TGG | 0.429676 | 7.2:-70291182 | MS.gene53787:CDS |
| TAAAGTTCCTTATGGTCTCT+TGG | 0.431619 | 7.2:-70291201 | MS.gene53787:CDS |
| TGATACAGAATTGGTGTTGA+TGG | 0.434223 | 7.2:-70291021 | MS.gene53787:intron |
| CTGAATCTTCCAAGCTCTCC+AGG | 0.437706 | 7.2:-70291137 | MS.gene53787:CDS |
| ATACTTTCATCCTTTGATGT+TGG | 0.444955 | 7.2:-70291421 | MS.gene53787:CDS |
| GGAGATAATAGTAGTCAATC+AGG | 0.447697 | 7.2:-70292558 | MS.gene53787:CDS |
| TACCTTCCACCTGGAGAGCT+TGG | 0.449786 | 7.2:+70291128 | None:intergenic |
| TGGCAGTTTCAGGAGCATAT+CGG | 0.472695 | 7.2:-70292481 | MS.gene53787:CDS |
| CCAATAATAATGTAAGTTCA+AGG | 0.474152 | 7.2:+70292358 | None:intergenic |
| AGGCTAACCTTAGCTAAAGC+TGG | 0.479611 | 7.2:+70290913 | None:intergenic |
| GCCACAAGGTTCCCGTTGAT+AGG | 0.484070 | 7.2:+70292301 | None:intergenic |
| GTGAAAGATGTCTTTGCACT+TGG | 0.487542 | 7.2:-70290979 | MS.gene53787:CDS |
| TTAGCTAAAGCTGGAAGCAC+TGG | 0.493262 | 7.2:+70290922 | None:intergenic |
| GACCAAACCAAGAGACCATA+AGG | 0.496146 | 7.2:+70291194 | None:intergenic |
| ATTGAGGTCAACCTATCAAC+GGG | 0.497094 | 7.2:-70292312 | MS.gene53787:CDS |
| TACATTATTATTGGAGAAGG+TGG | 0.508624 | 7.2:-70292349 | MS.gene53787:CDS |
| TGAAAGATGTCTTTGCACTT+GGG | 0.511531 | 7.2:-70290978 | MS.gene53787:CDS |
| CATTCATGTCACACTCATTG+AGG | 0.529894 | 7.2:-70291548 | MS.gene53787:intron |
| GGTTATGGAGTTGTCTATTG+AGG | 0.531389 | 7.2:-70292328 | MS.gene53787:CDS |
| AGTCTGGAGTTTGTCTTATG+CGG | 0.535341 | 7.2:-70291274 | MS.gene53787:CDS |
| TAGTGACGGCGATTCTCGAA+AGG | 0.537864 | 7.2:-70292601 | MS.gene53787:CDS |
| GATCTGAATGGCTCTCAAGC+AGG | 0.544479 | 7.2:-70292513 | MS.gene53787:CDS |
| TTGAATGATAAGTTTAGTGA+CGG | 0.544625 | 7.2:-70292615 | MS.gene53787:CDS |
| CTGTTGAAGGCCAACATCAA+AGG | 0.547269 | 7.2:+70291411 | None:intergenic |
| ACTTACATTATTATTGGAGA+AGG | 0.554262 | 7.2:-70292352 | MS.gene53787:CDS |
| GAAAGATGTCTTTGCACTTG+GGG | 0.560397 | 7.2:-70290977 | MS.gene53787:CDS |
| AGTGCTTCCAGCTTTAGCTA+AGG | 0.564009 | 7.2:-70290920 | MS.gene53787:intron |
| ACAGAATTGGTGTTGATGGA+TGG | 0.570983 | 7.2:-70291017 | MS.gene53787:intron |
| TCTTATGCGGGGTGTTGTGA+AGG | 0.573327 | 7.2:-70291261 | MS.gene53787:CDS |
| GGCTTCACATACCTTCCACC+TGG | 0.586382 | 7.2:+70291119 | None:intergenic |
| TTCCAAGCTCTCCAGGTGGA+AGG | 0.587295 | 7.2:-70291130 | MS.gene53787:intron |
| CGTTTAGAGGAAGATCTGAA+TGG | 0.587837 | 7.2:-70292525 | MS.gene53787:CDS |
| CAAACCAGTGGCCCCAACCA+AGG | 0.615388 | 7.2:+70292391 | None:intergenic |
| CTCAGAGGGACCAACTCCTG+TGG | 0.615481 | 7.2:+70291172 | None:intergenic |
| TATTGAGGTCAACCTATCAA+CGG | 0.615709 | 7.2:-70292313 | MS.gene53787:CDS |
| TATGCGGGGTGTTGTGAAGG+AGG | 0.618785 | 7.2:-70291258 | MS.gene53787:CDS |
| GGAGTTTCTTAACGGCCACA+AGG | 0.628154 | 7.2:+70292287 | None:intergenic |
| ACCAGAACACGACGATGACG+CGG | 0.634439 | 7.2:+70292431 | None:intergenic |
| ACCTATCAACGGGAACCTTG+TGG | 0.638382 | 7.2:-70292302 | MS.gene53787:CDS |
| TCTGGAGTTTGTCTTATGCG+GGG | 0.644473 | 7.2:-70291272 | MS.gene53787:CDS |
| TGCAACGAAGCTCTTAACAA+AGG | 0.649348 | 7.2:-70291386 | MS.gene53787:intron |
| GGTCCCTTAACGCAAACCAG+TGG | 0.682113 | 7.2:+70292379 | None:intergenic |
| AATCTTCCAAGCTCTCCAGG+TGG | 0.690106 | 7.2:-70291134 | MS.gene53787:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAAAACTAAAAAATAA+AGG | + | chr7.2:70291157-70291176 | None:intergenic | 10.0% |
| !!! | AACATTTTTTATTTTAAATC+TGG | + | chr7.2:70292279-70292298 | None:intergenic | 10.0% |
| !! | AAAAAATTGACACACATATA+AGG | + | chr7.2:70291445-70291464 | None:intergenic | 20.0% |
| !! | AAAAATTGACACACATATAA+GGG | + | chr7.2:70291444-70291463 | None:intergenic | 20.0% |
| !! | AATGTAAAAAATCCCAATAT+AGG | - | chr7.2:70292582-70292601 | MS.gene53787:CDS | 20.0% |
| !! | AATGTAAATTTGACTATTGA+AGG | + | chr7.2:70291417-70291436 | None:intergenic | 20.0% |
| !! | AATGTATGATATTGACAAAT+AGG | + | chr7.2:70291239-70291258 | None:intergenic | 20.0% |
| !! | ATATACAATCAAAACTCAAA+AGG | + | chr7.2:70292018-70292037 | None:intergenic | 20.0% |
| !! | ATGTAAAAAATCCCAATATA+GGG | - | chr7.2:70292583-70292602 | MS.gene53787:CDS | 20.0% |
| !! | TAATAGCTTACAAATTATTG+AGG | + | chr7.2:70291111-70291130 | None:intergenic | 20.0% |
| !! | TATATAGCATGATCAATAAT+AGG | + | chr7.2:70291394-70291413 | None:intergenic | 20.0% |
| !!! | ATCACTCAAAATTATCTTTT+GGG | + | chr7.2:70292148-70292167 | None:intergenic | 20.0% |
| !!! | GATTTTTTACATTGGATTAA+AGG | + | chr7.2:70292575-70292594 | None:intergenic | 20.0% |
| !!! | GTCATAAACTATTTGTTTTT+TGG | + | chr7.2:70291287-70291306 | None:intergenic | 20.0% |
| !!! | TATATTGGGATTTTTTACAT+TGG | + | chr7.2:70292583-70292602 | None:intergenic | 20.0% |
| !!! | TATCACTCAAAATTATCTTT+TGG | + | chr7.2:70292149-70292168 | None:intergenic | 20.0% |
| !!! | TATGACAAGTTTTAAATTGA+AGG | - | chr7.2:70291301-70291320 | MS.gene53787:intron | 20.0% |
| ! | AATCACACTGTTATAAAACT+TGG | + | chr7.2:70291185-70291204 | None:intergenic | 25.0% |
| ! | ACAAAACATCATAGACAATA+AGG | + | chr7.2:70292484-70292503 | None:intergenic | 25.0% |
| ! | ACTTACATTATTATTGGAGA+AGG | - | chr7.2:70291022-70291041 | MS.gene53787:intron | 25.0% |
| ! | ATTAATACAGTACCCTATAT+TGG | + | chr7.2:70292598-70292617 | None:intergenic | 25.0% |
| ! | ATTATTGAGGAGTTTCTTAA+CGG | + | chr7.2:70291098-70291117 | None:intergenic | 25.0% |
| ! | CCAATAATAATGTAAGTTCA+AGG | + | chr7.2:70291019-70291038 | None:intergenic | 25.0% |
| ! | CCTTGAACTTACATTATTAT+TGG | - | chr7.2:70291016-70291035 | MS.gene53787:CDS | 25.0% |
| ! | GCTTAAAACTAAACTAAGTA+TGG | + | chr7.2:70291588-70291607 | None:intergenic | 25.0% |
| ! | TCATGAAAAGTTAAACACAA+TGG | + | chr7.2:70291920-70291939 | None:intergenic | 25.0% |
| ! | TTAATACAGTACCCTATATT+GGG | + | chr7.2:70292597-70292616 | None:intergenic | 25.0% |
| ! | TTAATATGCATTACTTTGAC+AGG | - | chr7.2:70292613-70292632 | MS.gene53787:CDS | 25.0% |
| ! | TTGAATGATAAGTTTAGTGA+CGG | - | chr7.2:70290759-70290778 | MS.gene53787:intron | 25.0% |
| !! | AAAACGTTTTTCATTATGAC+AGG | - | chr7.2:70291665-70291684 | MS.gene53787:intron | 25.0% |
| !! | ATTCAATTTTTGTATCAGTC+TGG | - | chr7.2:70292084-70292103 | MS.gene53787:intron | 25.0% |
| !! | TCACTCAAAATTATCTTTTG+GGG | + | chr7.2:70292147-70292166 | None:intergenic | 25.0% |
| !!! | ATTAGTCTTATAGAATCATG+GGG | - | chr7.2:70291357-70291376 | MS.gene53787:intron | 25.0% |
| !!! | CATTAGTCTTATAGAATCAT+GGG | - | chr7.2:70291356-70291375 | MS.gene53787:intron | 25.0% |
| !!! | GTGTTTAACTTTTCATGATT+AGG | - | chr7.2:70291922-70291941 | MS.gene53787:intron | 25.0% |
| !!! | GTTTTGATTCAAACAAAGAA+TGG | - | chr7.2:70290795-70290814 | MS.gene53787:intron | 25.0% |
| !!! | TGTCATTATTTTTTTGCCAA+AGG | - | chr7.2:70291634-70291653 | MS.gene53787:intron | 25.0% |
| ATACTTTCATCCTTTGATGT+TGG | - | chr7.2:70291953-70291972 | MS.gene53787:intron | 30.0% | |
| CCATGATTCTATAAGACTAA+TGG | + | chr7.2:70291358-70291377 | None:intergenic | 30.0% | |
| CTTTGTATGCATCAAATGAT+TGG | - | chr7.2:70291547-70291566 | MS.gene53787:intron | 30.0% | |
| GATAGAACTAAAGTTCCTTA+TGG | - | chr7.2:70292165-70292184 | MS.gene53787:intron | 30.0% | |
| GTTGTTGAATGATACAGAAT+TGG | - | chr7.2:70292344-70292363 | MS.gene53787:CDS | 30.0% | |
| TACATTATTATTGGAGAAGG+TGG | - | chr7.2:70291025-70291044 | MS.gene53787:intron | 30.0% | |
| TATAGAATCATGGGGATATA+AGG | - | chr7.2:70291365-70291384 | MS.gene53787:intron | 30.0% | |
| TGGCAAAAAAATAATGACAG+CGG | + | chr7.2:70291633-70291652 | None:intergenic | 30.0% | |
| TTGATGCATACAAAGATCTT+TGG | + | chr7.2:70291542-70291561 | None:intergenic | 30.0% | |
| ! | TGATGTTTTGTCAGTACATA+TGG | - | chr7.2:70292493-70292512 | MS.gene53787:CDS | 30.0% |
| !! | ATGTCGACTTAACTTAGTTT+AGG | + | chr7.2:70292539-70292558 | None:intergenic | 30.0% |
| !! | CCATTAGTCTTATAGAATCA+TGG | - | chr7.2:70291355-70291374 | MS.gene53787:intron | 30.0% |
| !!! | AGTTTTTTGACAAACTCAGA+GGG | + | chr7.2:70292219-70292238 | None:intergenic | 30.0% |
| ACTTGACAGTTCATCATTGA+AGG | + | chr7.2:70292045-70292064 | None:intergenic | 35.0% | |
| AGGCTCATTTAATCGTTTAG+AGG | - | chr7.2:70290836-70290855 | MS.gene53787:intron | 35.0% | |
| AGGCTGCAATGAAACTATTA+AGG | + | chr7.2:70291137-70291156 | None:intergenic | 35.0% | |
| ATTATTGGAGAAGGTGGTTA+TGG | - | chr7.2:70291031-70291050 | MS.gene53787:intron | 35.0% | |
| GGAGATAATAGTAGTCAATC+AGG | - | chr7.2:70290816-70290835 | MS.gene53787:intron | 35.0% | |
| TAAAGTTCCTTATGGTCTCT+TGG | - | chr7.2:70292173-70292192 | MS.gene53787:intron | 35.0% | |
| TATTGAGGTCAACCTATCAA+CGG | - | chr7.2:70291061-70291080 | MS.gene53787:intron | 35.0% | |
| TCATCAATCTTGTGCACTAT+AGG | - | chr7.2:70291464-70291483 | MS.gene53787:intron | 35.0% | |
| TGAAAGATGTCTTTGCACTT+GGG | - | chr7.2:70292396-70292415 | MS.gene53787:CDS | 35.0% | |
| ! | ACTATGTTTGTTGCAGCAAA+AGG | - | chr7.2:70291259-70291278 | MS.gene53787:CDS | 35.0% |
| ! | GTTTTCTTGAACAAACTGGA+AGG | - | chr7.2:70292429-70292448 | MS.gene53787:CDS | 35.0% |
| !! | TGATACAGAATTGGTGTTGA+TGG | - | chr7.2:70292353-70292372 | MS.gene53787:CDS | 35.0% |
| !!! | CAGTTTTTTGACAAACTCAG+AGG | + | chr7.2:70292220-70292239 | None:intergenic | 35.0% |
| ATTGAGGTCAACCTATCAAC+GGG | - | chr7.2:70291062-70291081 | MS.gene53787:intron | 40.0% | |
| CAATCTTGTGCACTATAGGT+TGG | - | chr7.2:70291468-70291487 | MS.gene53787:intron | 40.0% | |
| CATTCATGTCACACTCATTG+AGG | - | chr7.2:70291826-70291845 | MS.gene53787:intron | 40.0% | |
| CATTGTGTAGTTATTGGAGG+TGG | - | chr7.2:70291719-70291738 | MS.gene53787:intron | 40.0% | |
| CCACTAAATTCCACTCATGT+AGG | + | chr7.2:70291746-70291765 | None:intergenic | 40.0% | |
| CCTACATGAGTGGAATTTAG+TGG | - | chr7.2:70291743-70291762 | MS.gene53787:intron | 40.0% | |
| CGTTTAGAGGAAGATCTGAA+TGG | - | chr7.2:70290849-70290868 | MS.gene53787:intron | 40.0% | |
| CTGCATTGTGTAGTTATTGG+AGG | - | chr7.2:70291716-70291735 | MS.gene53787:intron | 40.0% | |
| CTGCTGCATTGTGTAGTTAT+TGG | - | chr7.2:70291713-70291732 | MS.gene53787:intron | 40.0% | |
| GAAAGATGTCTTTGCACTTG+GGG | - | chr7.2:70292397-70292416 | MS.gene53787:CDS | 40.0% | |
| GGTTATGGAGTTGTCTATTG+AGG | - | chr7.2:70291046-70291065 | MS.gene53787:intron | 40.0% | |
| GTGAAAGATGTCTTTGCACT+TGG | - | chr7.2:70292395-70292414 | MS.gene53787:CDS | 40.0% | |
| TGAATTCTCTCACCTTGGTT+GGG | - | chr7.2:70290971-70290990 | MS.gene53787:CDS | 40.0% | |
| TGACAGTTCATCATTGAAGG+TGG | + | chr7.2:70292042-70292061 | None:intergenic | 40.0% | |
| TGCAACGAAGCTCTTAACAA+AGG | - | chr7.2:70291988-70292007 | MS.gene53787:intron | 40.0% | |
| TTCCTTATGGTCTCTTGGTT+TGG | - | chr7.2:70292178-70292197 | MS.gene53787:intron | 40.0% | |
| ! | AATTGAAGGTGTAGTCATGC+TGG | - | chr7.2:70291315-70291334 | MS.gene53787:intron | 40.0% |
| ! | AGTCTGGAGTTTGTCTTATG+CGG | - | chr7.2:70292100-70292119 | MS.gene53787:intron | 40.0% |
| ! | GAAGTCTATTTTGTGTGCTG+AGG | - | chr7.2:70291866-70291885 | MS.gene53787:intron | 40.0% |
| ! | GCACTATAGGTTGGATTACT+TGG | - | chr7.2:70291477-70291496 | MS.gene53787:intron | 40.0% |
| !! | AACGTTTTCAGCTTAGCCTT+TGG | + | chr7.2:70291653-70291672 | None:intergenic | 40.0% |
| !! | ACAGAATTGGTGTTGATGGA+TGG | - | chr7.2:70292357-70292376 | MS.gene53787:CDS | 40.0% |
| !! | TTCCTGTTTCTAGAGCATCA+TGG | - | chr7.2:70291204-70291223 | MS.gene53787:CDS | 40.0% |
| !!! | GCTGGTTTTCTTGAACAAAC+TGG | - | chr7.2:70292425-70292444 | MS.gene53787:CDS | 40.0% |
| AGGCTAACCTTAGCTAAAGC+TGG | + | chr7.2:70292464-70292483 | None:intergenic | 45.0% | |
| CAACCAAGGTGAGAGAATTC+AGG | + | chr7.2:70290972-70290991 | None:intergenic | 45.0% | |
| CTGAATTCTCTCACCTTGGT+TGG | - | chr7.2:70290970-70290989 | MS.gene53787:CDS | 45.0% | |
| CTGTTGAAGGCCAACATCAA+AGG | + | chr7.2:70291966-70291985 | None:intergenic | 45.0% | |
| GAATTCTCTCACCTTGGTTG+GGG | - | chr7.2:70290972-70290991 | MS.gene53787:CDS | 45.0% | |
| GACCAAACCAAGAGACCATA+AGG | + | chr7.2:70292183-70292202 | None:intergenic | 45.0% | |
| GCTTCGTTGCATACTGTTGA+AGG | + | chr7.2:70291979-70291998 | None:intergenic | 45.0% | |
| TCTCAAGCAGGTGACGATAA+TGG | - | chr7.2:70290873-70290892 | MS.gene53787:intron | 45.0% | |
| TTGCCTGAATTCTCTCACCT+TGG | - | chr7.2:70290966-70290985 | MS.gene53787:CDS | 45.0% | |
| ! | AGTGCTTCCAGCTTTAGCTA+AGG | - | chr7.2:70292454-70292473 | MS.gene53787:CDS | 45.0% |
| ! | GTCTGGAGTTTGTCTTATGC+GGG | - | chr7.2:70292101-70292120 | MS.gene53787:intron | 45.0% |
| ! | GTGACGATAATGGCAGTTTC+AGG | - | chr7.2:70290883-70290902 | MS.gene53787:intron | 45.0% |
| ! | TCTGGAGTTTGTCTTATGCG+GGG | - | chr7.2:70292102-70292121 | MS.gene53787:intron | 45.0% |
| ! | TGGCAGTTTCAGGAGCATAT+CGG | - | chr7.2:70290893-70290912 | MS.gene53787:intron | 45.0% |
| ! | TTAGCTAAAGCTGGAAGCAC+TGG | + | chr7.2:70292455-70292474 | None:intergenic | 45.0% |
| !! | CACCATGATGCTCTAGAAAC+AGG | + | chr7.2:70291209-70291228 | None:intergenic | 45.0% |
| !! | TCAGGAGCATATCGGCTTAT+AGG | - | chr7.2:70290901-70290920 | MS.gene53787:intron | 45.0% |
| AATCTTCCAAGCTCTCCAGG+TGG | - | chr7.2:70292240-70292259 | MS.gene53787:intron | 50.0% | |
| ACCTATCAACGGGAACCTTG+TGG | - | chr7.2:70291072-70291091 | MS.gene53787:intron | 50.0% | |
| CTGAATCTTCCAAGCTCTCC+AGG | - | chr7.2:70292237-70292256 | MS.gene53787:intron | 50.0% | |
| GATCTGAATGGCTCTCAAGC+AGG | - | chr7.2:70290861-70290880 | MS.gene53787:intron | 50.0% | |
| GGAGTTTCTTAACGGCCACA+AGG | + | chr7.2:70291090-70291109 | None:intergenic | 50.0% | |
| TAGTGACGGCGATTCTCGAA+AGG | - | chr7.2:70290773-70290792 | MS.gene53787:intron | 50.0% | |
| TTTGCACTTGGGGATTGTGC+TGG | - | chr7.2:70292407-70292426 | MS.gene53787:CDS | 50.0% | |
| !! | TCTTATGCGGGGTGTTGTGA+AGG | - | chr7.2:70292113-70292132 | MS.gene53787:intron | 50.0% |
| !! | TTGGTTTGGTCCACAGGAGT+TGG | - | chr7.2:70292192-70292211 | MS.gene53787:intron | 50.0% |
| ACCAGAACACGACGATGACG+CGG | + | chr7.2:70290946-70290965 | None:intergenic | 55.0% | |
| CACGACGATGACGCGGATAT+AGG | + | chr7.2:70290939-70290958 | None:intergenic | 55.0% | |
| GCCACAAGGTTCCCGTTGAT+AGG | + | chr7.2:70291076-70291095 | None:intergenic | 55.0% | |
| GGCTTCACATACCTTCCACC+TGG | + | chr7.2:70292258-70292277 | None:intergenic | 55.0% | |
| GGTCCCTTAACGCAAACCAG+TGG | + | chr7.2:70290998-70291017 | None:intergenic | 55.0% | |
| TACCTTCCACCTGGAGAGCT+TGG | + | chr7.2:70292249-70292268 | None:intergenic | 55.0% | |
| TGGAGGTGGTCCTACATGAG+TGG | - | chr7.2:70291733-70291752 | MS.gene53787:intron | 55.0% | |
| TTCCAAGCTCTCCAGGTGGA+AGG | - | chr7.2:70292244-70292263 | MS.gene53787:intron | 55.0% | |
| !! | GGGCCACTGGTTTGCGTTAA+GGG | - | chr7.2:70290992-70291011 | MS.gene53787:CDS | 55.0% |
| !! | GGTCTCTTGGTTTGGTCCAC+AGG | - | chr7.2:70292186-70292205 | MS.gene53787:intron | 55.0% |
| !! | TATGCGGGGTGTTGTGAAGG+AGG | - | chr7.2:70292116-70292135 | MS.gene53787:intron | 55.0% |
| CAAACCAGTGGCCCCAACCA+AGG | + | chr7.2:70290986-70291005 | None:intergenic | 60.0% | |
| CTCAGAGGGACCAACTCCTG+TGG | + | chr7.2:70292205-70292224 | None:intergenic | 60.0% | |
| TCCGCGTCATCGTCGTGTTC+TGG | - | chr7.2:70290942-70290961 | MS.gene53787:CDS | 60.0% | |
| !! | GGGGCCACTGGTTTGCGTTA+AGG | - | chr7.2:70290991-70291010 | MS.gene53787:CDS | 60.0% |
| CTCACCTTGGTTGGGGCCAC+TGG | - | chr7.2:70290979-70290998 | MS.gene53787:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 70290750 | 70292646 | 70290750 | ID=MS.gene53787 |
| chr7.2 | mRNA | 70290750 | 70292646 | 70290750 | ID=MS.gene53787.t1;Parent=MS.gene53787 |
| chr7.2 | exon | 70292300 | 70292646 | 70292300 | ID=MS.gene53787.t1.exon1;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70292300 | 70292646 | 70292300 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| chr7.2 | exon | 70291549 | 70291633 | 70291549 | ID=MS.gene53787.t1.exon2;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70291549 | 70291633 | 70291549 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| chr7.2 | exon | 70291387 | 70291452 | 70291387 | ID=MS.gene53787.t1.exon3;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70291387 | 70291452 | 70291387 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| chr7.2 | exon | 70291131 | 70291294 | 70291131 | ID=MS.gene53787.t1.exon4;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70291131 | 70291294 | 70291131 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| chr7.2 | exon | 70290921 | 70291035 | 70290921 | ID=MS.gene53787.t1.exon5;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70290921 | 70291035 | 70290921 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| chr7.2 | exon | 70290750 | 70290761 | 70290750 | ID=MS.gene53787.t1.exon6;Parent=MS.gene53787.t1 |
| chr7.2 | CDS | 70290750 | 70290761 | 70290750 | ID=cds.MS.gene53787.t1;Parent=MS.gene53787.t1 |
| Gene Sequence |
| Protein sequence |
