Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060352.t1 | RHN64213.1 | 94.9 | 295 | 15 | 0 | 2 | 296 | 2972 | 3266 | 4.10E-139 | 504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060352.t1 | G7JJ22 | 94.9 | 295 | 15 | 0 | 2 | 296 | 2988 | 3282 | 2.9e-139 | 504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene060352 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene060352 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene051744 | MS.gene060352 | 0.806549 | 7.80E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene060352 | 0.823698 | 1.20E-53 | -1.69E-46 |
| MS.gene053145 | MS.gene060352 | 0.80033 | 1.52E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene060352 | 0.821296 | 4.35E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene060352 | 0.800843 | 1.19E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene060352 | 0.811949 | 5.42E-51 | -1.69E-46 |
| MS.gene060348 | MS.gene060352 | 0.954104 | 6.26E-112 | -1.69E-46 |
| MS.gene060352 | MS.gene060353 | 0.876171 | 1.73E-68 | -1.69E-46 |
| MS.gene060352 | MS.gene061359 | 0.841882 | 3.63E-58 | -1.69E-46 |
| MS.gene060352 | MS.gene065820 | 0.804077 | 2.57E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene065889 | 0.801464 | 8.89E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene066335 | 0.83927 | 1.75E-57 | -1.69E-46 |
| MS.gene060352 | MS.gene066437 | 0.806671 | 7.35E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene066782 | 0.810422 | 1.16E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene066784 | 0.80741 | 5.12E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene070582 | 0.833522 | 5.08E-56 | -1.69E-46 |
| MS.gene060352 | MS.gene071342 | 0.804477 | 2.12E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene071441 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene071442 | 0.819484 | 1.13E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene071444 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene07145 | 0.803458 | 3.45E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene072014 | 0.81866 | 1.75E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene07294 | 0.815943 | 7.13E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene07298 | 0.82591 | 3.62E-54 | -1.69E-46 |
| MS.gene060352 | MS.gene073008 | 0.808993 | 2.36E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene07394 | 0.832239 | 1.06E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene07876 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene08396 | 0.809693 | 1.67E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene20253 | 0.826044 | 3.37E-54 | -1.69E-46 |
| MS.gene060352 | MS.gene20809 | 0.813793 | 2.14E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene31022 | 0.861247 | 1.17E-63 | -1.69E-46 |
| MS.gene060352 | MS.gene32861 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene32893 | 0.832224 | 1.07E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene33650 | 0.809169 | 2.16E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene35218 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene44412 | 0.801187 | 1.01E-48 | -1.69E-46 |
| MS.gene060352 | MS.gene44510 | 0.822122 | 2.80E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene51361 | 0.803047 | 4.20E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene51511 | 0.838441 | 2.87E-57 | -1.69E-46 |
| MS.gene060352 | MS.gene51788 | 0.830412 | 2.98E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene52357 | 0.800981 | 1.12E-48 | -1.69E-46 |
| MS.gene060352 | MS.gene52627 | 0.800201 | 1.61E-48 | -1.69E-46 |
| MS.gene060352 | MS.gene53191 | 0.809957 | 1.46E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene53787 | 0.816875 | 4.41E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene54967 | 0.805287 | 1.44E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene55935 | 0.804972 | 1.67E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene57178 | 0.830849 | 2.33E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene60171 | 0.819985 | 8.71E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene61330 | 0.814859 | 1.24E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene63793 | 0.821326 | 4.29E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene67746 | 0.819699 | 1.01E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene68029 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene68824 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene68826 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene68999 | 0.80264 | 5.10E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene69891 | 0.816481 | 5.41E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene70656 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene71718 | 0.810722 | 1.00E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene71945 | 0.806105 | 9.67E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene72610 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene72820 | 0.816249 | 6.10E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene73014 | 0.803736 | 3.02E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene73467 | 0.809007 | 2.34E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene75913 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene76244 | 0.821693 | 3.53E-53 | -1.69E-46 |
| MS.gene060352 | MS.gene77789 | 0.818428 | 1.97E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene81783 | 0.830149 | 3.46E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene82930 | 0.807133 | 5.87E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene82962 | 0.812429 | 4.26E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene84387 | 0.816419 | 5.58E-52 | -1.69E-46 |
| MS.gene060352 | MS.gene84803 | 0.831867 | 1.31E-55 | -1.69E-46 |
| MS.gene060352 | MS.gene84995 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene93311 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene060352 | MS.gene95616 | 0.810975 | 8.82E-51 | -1.69E-46 |
| MS.gene060352 | MS.gene96364 | 0.810194 | 1.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060352.t1 | MTR_4g118720 | 95.593 | 295 | 13 | 0 | 2 | 296 | 2988 | 3282 | 6.49e-175 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACCGATGCTGAGGAATT+AGG | 0.208543 | 8.4:-12812407 | None:intergenic |
| AGAAGTTAATTCCTTGCTTT+TGG | 0.214754 | 8.4:-12812073 | None:intergenic |
| GTTGCAGAGGACATCCCTTT+TGG | 0.274645 | 8.4:-12812133 | None:intergenic |
| CGCTCTGCCTTCTTGCTCGC+TGG | 0.348500 | 8.4:+12811781 | MS.gene060352:CDS |
| AGATAATGATGTGTTAATTC+AGG | 0.379885 | 8.4:+12811811 | MS.gene060352:CDS |
| TGAGATGGTTCATCAAATAA+AGG | 0.400520 | 8.4:+12812014 | MS.gene060352:CDS |
| TCTGATTTCTCCTGTGGTAA+AGG | 0.430463 | 8.4:-12811979 | None:intergenic |
| ACAATTTCTCTGATCTGCAT+TGG | 0.432368 | 8.4:-12811591 | None:intergenic |
| ATCAGAGAAATTGTTCTGAT+AGG | 0.442703 | 8.4:+12811600 | MS.gene060352:CDS |
| TTGAGATACATTTGCAATCT+CGG | 0.447612 | 8.4:-12812381 | None:intergenic |
| CTAGAGGGAAGTTGTATAGA+TGG | 0.450093 | 8.4:+12811857 | MS.gene060352:CDS |
| TGACCAGTCTCGACTTCTAA+AGG | 0.453149 | 8.4:-12812317 | None:intergenic |
| TCACCCTCAGGTTCAGAAAC+GGG | 0.458247 | 8.4:-12811728 | None:intergenic |
| GCCTTCTTGCTCGCTGGTGA+AGG | 0.462218 | 8.4:+12811787 | MS.gene060352:CDS |
| AGAAAATGAAGAGAATCAAA+TGG | 0.463269 | 8.4:+12812170 | MS.gene060352:CDS |
| TTGTCTGAGAAGGATTCAAT+TGG | 0.469260 | 8.4:+12812554 | MS.gene060352:CDS |
| AGCCTTTCTGGATCACCCTC+AGG | 0.472209 | 8.4:-12811740 | None:intergenic |
| GCTAAAATGCAGGCTGATGT+AGG | 0.478865 | 8.4:+12812473 | MS.gene060352:CDS |
| TTCCTCAGCATCGGTCGAAA+AGG | 0.486549 | 8.4:+12812412 | MS.gene060352:CDS |
| AAGTTGATGCATCACCCAAA+AGG | 0.488992 | 8.4:+12812118 | MS.gene060352:CDS |
| GTTAATTCAGGACGAACAAA+AGG | 0.496497 | 8.4:+12811823 | MS.gene060352:CDS |
| ATTAACTTCTTCGTCAGTGA+TGG | 0.504966 | 8.4:+12812086 | MS.gene060352:CDS |
| CATTGCCAGTCCTTTACCAC+AGG | 0.507595 | 8.4:+12811969 | MS.gene060352:CDS |
| ATCACCCTCAGGTTCAGAAA+CGG | 0.512036 | 8.4:-12811729 | None:intergenic |
| AGTTGATGCATCACCCAAAA+GGG | 0.515241 | 8.4:+12812119 | MS.gene060352:CDS |
| GACTGTGACATGGTTGATCC+AGG | 0.516379 | 8.4:+12812042 | MS.gene060352:CDS |
| CAACTTCCCTCTAGAATCAA+AGG | 0.523856 | 8.4:-12811848 | None:intergenic |
| TGTGGCCGACAGTCACTAGA+TGG | 0.525915 | 8.4:-12811634 | None:intergenic |
| AAAGGATCCTTTGATTCTAG+AGG | 0.526482 | 8.4:+12811841 | MS.gene060352:CDS |
| AGAATGCTCTGAAGCTGAGA+TGG | 0.526821 | 8.4:+12811999 | MS.gene060352:CDS |
| GAGCATTCTGATTTCTCCTG+TGG | 0.536023 | 8.4:-12811985 | None:intergenic |
| CTGTGGTAAAGGACTGGCAA+TGG | 0.548693 | 8.4:-12811968 | None:intergenic |
| AACCTGAGGGTGATCCAGAA+AGG | 0.553280 | 8.4:+12811738 | MS.gene060352:CDS |
| AGCTCCTAATTCCTCAGCAT+CGG | 0.556937 | 8.4:+12812403 | MS.gene060352:CDS |
| GAATCAAATGGATGATAATG+AGG | 0.561262 | 8.4:+12812182 | MS.gene060352:CDS |
| ATGCAGGCTGATGTAGGAGA+TGG | 0.563305 | 8.4:+12812479 | MS.gene060352:CDS |
| TACTCCCGTTTCTGAACCTG+AGG | 0.565621 | 8.4:+12811724 | MS.gene060352:CDS |
| GAGGAAGGCTTATCTGAGAA+AGG | 0.566536 | 8.4:+12812434 | MS.gene060352:CDS |
| TGAAAGCACAGCTAAAATGC+AGG | 0.568502 | 8.4:+12812463 | MS.gene060352:CDS |
| AAGGATCCTTTGATTCTAGA+GGG | 0.568780 | 8.4:+12811842 | MS.gene060352:CDS |
| CTCAGCATCGGTCGAAAAGG+AGG | 0.569242 | 8.4:+12812415 | MS.gene060352:CDS |
| AACTTCTTCGTCAGTGATGG+AGG | 0.569897 | 8.4:+12812089 | MS.gene060352:CDS |
| GGCTGATGTAGGAGATGGAA+TGG | 0.571153 | 8.4:+12812484 | MS.gene060352:CDS |
| GCTTGTTGAGTTGTCTGAGA+AGG | 0.575729 | 8.4:+12812544 | MS.gene060352:CDS |
| AAGCCTTTAGAAGTCGAGAC+TGG | 0.586788 | 8.4:+12812314 | MS.gene060352:CDS |
| GAGGATGCATTGTCGATGAA+AGG | 0.587975 | 8.4:+12811662 | MS.gene060352:CDS |
| TAGCAGCAAGTGGGTTGCAG+AGG | 0.593160 | 8.4:-12812146 | None:intergenic |
| TTTCTCCTGTGGTAAAGGAC+TGG | 0.595886 | 8.4:-12811974 | None:intergenic |
| GCATCGGTCGAAAAGGAGGA+AGG | 0.611644 | 8.4:+12812419 | MS.gene060352:CDS |
| GCCGACAGTCACTAGATGGT+CGG | 0.612454 | 8.4:-12811630 | None:intergenic |
| AGGATTGACATCCAAAAGCA+AGG | 0.614984 | 8.4:+12812062 | MS.gene060352:CDS |
| TCCTTCACCAGCGAGCAAGA+AGG | 0.623740 | 8.4:-12811788 | None:intergenic |
| GACTGTCGGCCACACTAGTG+AGG | 0.645688 | 8.4:+12811643 | MS.gene060352:CDS |
| TCCGACCATCTAGTGACTGT+CGG | 0.650244 | 8.4:+12811629 | MS.gene060352:CDS |
| ACAATGCATCCTCACTAGTG+TGG | 0.657647 | 8.4:-12811652 | None:intergenic |
| CGAGACTGGTCATCAAATCG+AGG | 0.673178 | 8.4:+12812328 | MS.gene060352:CDS |
| ACTCCCGTTTCTGAACCTGA+GGG | 0.686794 | 8.4:+12811725 | MS.gene060352:CDS |
| AAAGGTATCTGACTGTGACA+TGG | 0.689682 | 8.4:+12812032 | MS.gene060352:CDS |
| AAGTTGTATAGATGGCACCA+AGG | 0.735776 | 8.4:+12811865 | MS.gene060352:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTAATAGATTTTATTTAAT+TGG | - | chr8.4:12812281-12812300 | None:intergenic | 10.0% |
| !! | ATAAAATCTATTAACATTAC+AGG | + | chr8.4:12812286-12812305 | MS.gene060352:intron | 15.0% |
| !! | AATGAATTTGTGAAATTGAA+TGG | - | chr8.4:12812248-12812267 | None:intergenic | 20.0% |
| !!! | TTCACAAATTCATTTCTTTT+GGG | + | chr8.4:12812254-12812273 | MS.gene060352:intron | 20.0% |
| !!! | TTTCACAAATTCATTTCTTT+TGG | + | chr8.4:12812253-12812272 | MS.gene060352:intron | 20.0% |
| ! | AGAAAATGAAGAGAATCAAA+TGG | + | chr8.4:12812170-12812189 | MS.gene060352:CDS | 25.0% |
| ! | AGATAATGATGTGTTAATTC+AGG | + | chr8.4:12811811-12811830 | MS.gene060352:CDS | 25.0% |
| ! | GAAATTGAATGGAAAATACA+AGG | - | chr8.4:12812237-12812256 | None:intergenic | 25.0% |
| ATCAGAGAAATTGTTCTGAT+AGG | + | chr8.4:12811600-12811619 | MS.gene060352:CDS | 30.0% | |
| TGAGATGGTTCATCAAATAA+AGG | + | chr8.4:12812014-12812033 | MS.gene060352:CDS | 30.0% | |
| TTGAGATACATTTGCAATCT+CGG | - | chr8.4:12812384-12812403 | None:intergenic | 30.0% | |
| ! | AGAAGTTAATTCCTTGCTTT+TGG | - | chr8.4:12812076-12812095 | None:intergenic | 30.0% |
| ! | GAATCAAATGGATGATAATG+AGG | + | chr8.4:12812182-12812201 | MS.gene060352:CDS | 30.0% |
| ! | GATGATAATGAGGTATTTCA+TGG | + | chr8.4:12812192-12812211 | MS.gene060352:intron | 30.0% |
| ! | TTTTTAGATGTAAGCCTTTC+TGG | - | chr8.4:12811755-12811774 | None:intergenic | 30.0% |
| AAAGGATCCTTTGATTCTAG+AGG | + | chr8.4:12811841-12811860 | MS.gene060352:CDS | 35.0% | |
| AAGGATCCTTTGATTCTAGA+GGG | + | chr8.4:12811842-12811861 | MS.gene060352:CDS | 35.0% | |
| ACAATTTCTCTGATCTGCAT+TGG | - | chr8.4:12811594-12811613 | None:intergenic | 35.0% | |
| ATTAACTTCTTCGTCAGTGA+TGG | + | chr8.4:12812086-12812105 | MS.gene060352:CDS | 35.0% | |
| GTTAATTCAGGACGAACAAA+AGG | + | chr8.4:12811823-12811842 | MS.gene060352:CDS | 35.0% | |
| TTGTCTGAGAAGGATTCAAT+TGG | + | chr8.4:12812554-12812573 | MS.gene060352:CDS | 35.0% | |
| AAGTTGTATAGATGGCACCA+AGG | + | chr8.4:12811865-12811884 | MS.gene060352:CDS | 40.0% | |
| AGGATTGACATCCAAAAGCA+AGG | + | chr8.4:12812062-12812081 | MS.gene060352:CDS | 40.0% | |
| CTAGAGGGAAGTTGTATAGA+TGG | + | chr8.4:12811857-12811876 | MS.gene060352:CDS | 40.0% | |
| TCTGATTTCTCCTGTGGTAA+AGG | - | chr8.4:12811982-12812001 | None:intergenic | 40.0% | |
| TGACTTTATCCCGACTTCAT+AGG | + | chr8.4:12811936-12811955 | MS.gene060352:intron | 40.0% | |
| ! | AAGGTTCTAACATGTGCCAA+TGG | - | chr8.4:12812218-12812237 | None:intergenic | 40.0% |
| ! | AGTTGATGCATCACCCAAAA+GGG | + | chr8.4:12812119-12812138 | MS.gene060352:CDS | 40.0% |
| ! | ATGAGGTATTTCATGGCCAT+TGG | + | chr8.4:12812199-12812218 | MS.gene060352:intron | 40.0% |
| ! | CATTTTCTGTAGCAGCAAGT+GGG | - | chr8.4:12812158-12812177 | None:intergenic | 40.0% |
| ! | TCATTTTCTGTAGCAGCAAG+TGG | - | chr8.4:12812159-12812178 | None:intergenic | 40.0% |
| ! | TGAAAGCACAGCTAAAATGC+AGG | + | chr8.4:12812463-12812482 | MS.gene060352:CDS | 40.0% |
| !! | AAAGGTATCTGACTGTGACA+TGG | + | chr8.4:12812032-12812051 | MS.gene060352:CDS | 40.0% |
| !! | AAGTTGATGCATCACCCAAA+AGG | + | chr8.4:12812118-12812137 | MS.gene060352:CDS | 40.0% |
| !! | CAACTTCCCTCTAGAATCAA+AGG | - | chr8.4:12811851-12811870 | None:intergenic | 40.0% |
| !! | TTGCTTTTGGATGTCAATCC+TGG | - | chr8.4:12812063-12812082 | None:intergenic | 40.0% |
| AACTTCTTCGTCAGTGATGG+AGG | + | chr8.4:12812089-12812108 | MS.gene060352:CDS | 45.0% | |
| AAGTCGGGATAAAGTCAGAG+AGG | - | chr8.4:12811933-12811952 | None:intergenic | 45.0% | |
| AAGTGCAACGTGACATACCT+TGG | - | chr8.4:12811885-12811904 | None:intergenic | 45.0% | |
| AATCCTGCACCTATGAAGTC+GGG | - | chr8.4:12811948-12811967 | None:intergenic | 45.0% | |
| ACAATGCATCCTCACTAGTG+TGG | - | chr8.4:12811655-12811674 | None:intergenic | 45.0% | |
| AGCTCCTAATTCCTCAGCAT+CGG | + | chr8.4:12812403-12812422 | MS.gene060352:CDS | 45.0% | |
| AGTCGGGATAAAGTCAGAGA+GGG | - | chr8.4:12811932-12811951 | None:intergenic | 45.0% | |
| ATCACCCTCAGGTTCAGAAA+CGG | - | chr8.4:12811732-12811751 | None:intergenic | 45.0% | |
| GAATCCTGCACCTATGAAGT+CGG | - | chr8.4:12811949-12811968 | None:intergenic | 45.0% | |
| GAGCATTCTGATTTCTCCTG+TGG | - | chr8.4:12811988-12812007 | None:intergenic | 45.0% | |
| GAGGAAGGCTTATCTGAGAA+AGG | + | chr8.4:12812434-12812453 | MS.gene060352:CDS | 45.0% | |
| GAGGATGCATTGTCGATGAA+AGG | + | chr8.4:12811662-12811681 | MS.gene060352:CDS | 45.0% | |
| GCTAAAATGCAGGCTGATGT+AGG | + | chr8.4:12812473-12812492 | MS.gene060352:CDS | 45.0% | |
| TGACCAGTCTCGACTTCTAA+AGG | - | chr8.4:12812320-12812339 | None:intergenic | 45.0% | |
| TTTCTCCTGTGGTAAAGGAC+TGG | - | chr8.4:12811977-12811996 | None:intergenic | 45.0% | |
| ! | AAGCCTTTAGAAGTCGAGAC+TGG | + | chr8.4:12812314-12812333 | MS.gene060352:CDS | 45.0% |
| ! | GCTTGTTGAGTTGTCTGAGA+AGG | + | chr8.4:12812544-12812563 | MS.gene060352:CDS | 45.0% |
| ! | TTGCAGAGGACATCCCTTTT+GGG | - | chr8.4:12812135-12812154 | None:intergenic | 45.0% |
| !! | AGAATGCTCTGAAGCTGAGA+TGG | + | chr8.4:12811999-12812018 | MS.gene060352:CDS | 45.0% |
| AACCTGAGGGTGATCCAGAA+AGG | + | chr8.4:12811738-12811757 | MS.gene060352:CDS | 50.0% | |
| ACTCCCGTTTCTGAACCTGA+GGG | + | chr8.4:12811725-12811744 | MS.gene060352:CDS | 50.0% | |
| ATGCAGGCTGATGTAGGAGA+TGG | + | chr8.4:12812479-12812498 | MS.gene060352:CDS | 50.0% | |
| CATTGCCAGTCCTTTACCAC+AGG | + | chr8.4:12811969-12811988 | MS.gene060352:CDS | 50.0% | |
| GACTGTGACATGGTTGATCC+AGG | + | chr8.4:12812042-12812061 | MS.gene060352:CDS | 50.0% | |
| GGCTGATGTAGGAGATGGAA+TGG | + | chr8.4:12812484-12812503 | MS.gene060352:CDS | 50.0% | |
| TACTCCCGTTTCTGAACCTG+AGG | + | chr8.4:12811724-12811743 | MS.gene060352:CDS | 50.0% | |
| TATCCCGACTTCATAGGTGC+AGG | + | chr8.4:12811942-12811961 | MS.gene060352:intron | 50.0% | |
| TCACCCTCAGGTTCAGAAAC+GGG | - | chr8.4:12811731-12811750 | None:intergenic | 50.0% | |
| TCCGACCATCTAGTGACTGT+CGG | + | chr8.4:12811629-12811648 | MS.gene060352:CDS | 50.0% | |
| TCGACCGATGCTGAGGAATT+AGG | - | chr8.4:12812410-12812429 | None:intergenic | 50.0% | |
| ! | CGAGACTGGTCATCAAATCG+AGG | + | chr8.4:12812328-12812347 | MS.gene060352:CDS | 50.0% |
| ! | CTGTGGTAAAGGACTGGCAA+TGG | - | chr8.4:12811971-12811990 | None:intergenic | 50.0% |
| ! | GTTGCAGAGGACATCCCTTT+TGG | - | chr8.4:12812136-12812155 | None:intergenic | 50.0% |
| !! | TTCCTCAGCATCGGTCGAAA+AGG | + | chr8.4:12812412-12812431 | MS.gene060352:CDS | 50.0% |
| AGCCTTTCTGGATCACCCTC+AGG | - | chr8.4:12811743-12811762 | None:intergenic | 55.0% | |
| GCCGACAGTCACTAGATGGT+CGG | - | chr8.4:12811633-12811652 | None:intergenic | 55.0% | |
| TCCTTCACCAGCGAGCAAGA+AGG | - | chr8.4:12811791-12811810 | None:intergenic | 55.0% | |
| TGTGGCCGACAGTCACTAGA+TGG | - | chr8.4:12811637-12811656 | None:intergenic | 55.0% | |
| ! | CTCCTTTTCGACCGATGCTG+AGG | - | chr8.4:12812417-12812436 | None:intergenic | 55.0% |
| ! | GCATCGGTCGAAAAGGAGGA+AGG | + | chr8.4:12812419-12812438 | MS.gene060352:CDS | 55.0% |
| !! | CTCAGCATCGGTCGAAAAGG+AGG | + | chr8.4:12812415-12812434 | MS.gene060352:CDS | 55.0% |
| !! | TAGCAGCAAGTGGGTTGCAG+AGG | - | chr8.4:12812149-12812168 | None:intergenic | 55.0% |
| GACTGTCGGCCACACTAGTG+AGG | + | chr8.4:12811643-12811662 | MS.gene060352:CDS | 60.0% | |
| GCCTTCTTGCTCGCTGGTGA+AGG | + | chr8.4:12811787-12811806 | MS.gene060352:CDS | 60.0% | |
| CGCTCTGCCTTCTTGCTCGC+TGG | + | chr8.4:12811781-12811800 | MS.gene060352:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 12811581 | 12812646 | 12811581 | ID=MS.gene060352 |
| chr8.4 | mRNA | 12811581 | 12812646 | 12811581 | ID=MS.gene060352.t1;Parent=MS.gene060352 |
| chr8.4 | exon | 12811581 | 12811886 | 12811581 | ID=MS.gene060352.t1.exon1;Parent=MS.gene060352.t1 |
| chr8.4 | CDS | 12811581 | 12811886 | 12811581 | ID=cds.MS.gene060352.t1;Parent=MS.gene060352.t1 |
| chr8.4 | exon | 12811958 | 12812203 | 12811958 | ID=MS.gene060352.t1.exon2;Parent=MS.gene060352.t1 |
| chr8.4 | CDS | 12811958 | 12812203 | 12811958 | ID=cds.MS.gene060352.t1;Parent=MS.gene060352.t1 |
| chr8.4 | exon | 12812308 | 12812646 | 12812308 | ID=MS.gene060352.t1.exon3;Parent=MS.gene060352.t1 |
| chr8.4 | CDS | 12812308 | 12812646 | 12812308 | ID=cds.MS.gene060352.t1;Parent=MS.gene060352.t1 |
| Gene Sequence |
| Protein sequence |
