Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53860.t1 | XP_003600695.2 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 8.90E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53860.t1 | A0A396IYR1 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 6.4e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53860 | MS.gene009653 | PPI |
| MS.gene53860 | MS.gene53889 | PPI |
| MS.gene53860 | MS.gene049594 | PPI |
| MS.gene53860 | MS.gene98045 | PPI |
| MS.gene53860 | MS.gene017247 | PPI |
| MS.gene53860 | MS.gene26246 | PPI |
| MS.gene53860 | MS.gene05127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53860.t1 | MTR_3g065180 | 89.231 | 260 | 25 | 2 | 13 | 269 | 1 | 260 | 9.13e-155 | 436 |
| MS.gene53860.t1 | MTR_7g056407 | 68.797 | 266 | 70 | 6 | 13 | 269 | 1 | 262 | 5.74e-95 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53860.t1 | AT3G07120 | 33.218 | 289 | 149 | 11 | 13 | 269 | 1 | 277 | 2.26e-22 | 95.9 |
| MS.gene53860.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene53860.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene53860.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene53860.t1 | AT4G13100 | 35.135 | 111 | 64 | 4 | 8 | 116 | 13 | 117 | 3.04e-12 | 65.9 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 4 | 114 | 4.87e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.92e-12 | 65.5 |
| MS.gene53860.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.92e-12 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTGCTGTTTGGATTT+TGG | 0.125473 | 3.2:+60622648 | None:intergenic |
| TAGCCGAAGCTTGTCTTTAA+AGG | 0.159939 | 3.2:+60622730 | None:intergenic |
| GAGCTCCCACGAGTGAATTT+TGG | 0.247907 | 3.2:+60622506 | None:intergenic |
| GATGTGTTCAAGGGAGCTTC+TGG | 0.299919 | 3.2:-60621997 | MS.gene53860:CDS |
| TGTGAAAAGCTTCTGCTGTT+TGG | 0.327474 | 3.2:+60622641 | None:intergenic |
| ATGTCGTTGATGGATTTGTT+AGG | 0.340148 | 3.2:-60622209 | MS.gene53860:CDS |
| TGCAGCGGAGGCTGAGGCTG+AGG | 0.380447 | 3.2:-60622252 | MS.gene53860:CDS |
| GATAATGCCCTCCCCGTCTC+TGG | 0.395714 | 3.2:+60622314 | None:intergenic |
| GGGGAGACTGATAGAGAGAT+GGG | 0.409616 | 3.2:-60622188 | MS.gene53860:CDS |
| GCTGAGGCTGAGGCTGCAAC+AGG | 0.416381 | 3.2:-60622242 | MS.gene53860:CDS |
| AGAAGCTGCAGCGGAGGCTG+AGG | 0.420492 | 3.2:-60622258 | MS.gene53860:CDS |
| TGTCGTTGATGGATTTGTTA+GGG | 0.426572 | 3.2:-60622208 | MS.gene53860:CDS |
| ACCTCCGACGATGTCGTTGA+TGG | 0.428506 | 3.2:-60622219 | MS.gene53860:CDS |
| TTTGAATATGGAAGGTCATC+GGG | 0.444490 | 3.2:-60623422 | None:intergenic |
| TGGATAGGGATGTCTGATGT+TGG | 0.451282 | 3.2:+60622668 | None:intergenic |
| AAGCCTTTAAAGACAAGCTT+CGG | 0.451547 | 3.2:-60622733 | MS.gene53860:CDS |
| TGGATCCGACGACACACTAC+TGG | 0.451753 | 3.2:+60622409 | None:intergenic |
| AGCGGCAGAAGCTGCAGCGG+AGG | 0.453049 | 3.2:-60622264 | MS.gene53860:CDS |
| AGAGCTTGGCGGTGTAGAGC+CGG | 0.453417 | 3.2:+60623303 | None:intergenic |
| CGTCTTTGATGATGTCTATG+AGG | 0.458675 | 3.2:+60623245 | None:intergenic |
| AGCAGTGGCGGCACAAGAAG+CGG | 0.461146 | 3.2:-60622282 | MS.gene53860:CDS |
| GGATGCTTGGTATCATCGTC+TGG | 0.461468 | 3.2:+60622335 | None:intergenic |
| GAAGCATAAGGGCACTGCTT+TGG | 0.462618 | 3.2:-60622045 | MS.gene53860:intron |
| CCTCCCCGTCTCTGGATGCT+TGG | 0.465184 | 3.2:+60622322 | None:intergenic |
| AGGGATGTCTGATGTTGGAA+TGG | 0.468079 | 3.2:+60622673 | None:intergenic |
| TGCTTTGGCGTTGTAGAGCT+TGG | 0.469785 | 3.2:+60623289 | None:intergenic |
| AGGGGAGACTGATAGAGAGA+TGG | 0.472745 | 3.2:-60622189 | MS.gene53860:CDS |
| TCGTCGGATCCATTCCGAAA+AGG | 0.487048 | 3.2:-60622398 | MS.gene53860:CDS |
| CGTCGGATCCATTCCGAAAA+GGG | 0.487282 | 3.2:-60622397 | MS.gene53860:CDS |
| ATTTGCATGGTGAAGCATAA+GGG | 0.490601 | 3.2:-60622056 | MS.gene53860:intron |
| TGTCTGAGTCGTGATGAGTT+TGG | 0.492254 | 3.2:+60622591 | None:intergenic |
| AAGGGAGCTTCTGGTTGCTA+AGG | 0.496586 | 3.2:-60621988 | MS.gene53860:CDS |
| GATACCAAGCATCCAGAGAC+GGG | 0.496822 | 3.2:-60622326 | MS.gene53860:CDS |
| AGAAGCGGCAGAAGCTGCAG+CGG | 0.497737 | 3.2:-60622267 | MS.gene53860:CDS |
| GAGCTTGGCGGTGTAGAGCC+GGG | 0.499580 | 3.2:+60623304 | None:intergenic |
| TGGCCTGCTAGCTGGAGCAT+GGG | 0.500180 | 3.2:+60622526 | None:intergenic |
| GACTGATAGAGAGATGGGGT+TGG | 0.500325 | 3.2:-60622183 | MS.gene53860:CDS |
| AATCCCATGCTCCAGCTAGC+AGG | 0.507491 | 3.2:-60622529 | MS.gene53860:CDS |
| GATAGAGAGATGGGGTTGGA+AGG | 0.508067 | 3.2:-60622179 | MS.gene53860:CDS |
| TAAAGCGTGCTGGCTCTGCT+TGG | 0.510415 | 3.2:-60622709 | MS.gene53860:CDS |
| AGATGGGGTTGGAAGGGTCA+AGG | 0.511672 | 3.2:-60622172 | MS.gene53860:intron |
| GGGATGTCTGATGTTGGAAT+GGG | 0.514310 | 3.2:+60622674 | None:intergenic |
| TTGGCCTGCTAGCTGGAGCA+TGG | 0.514758 | 3.2:+60622525 | None:intergenic |
| AAGCTTCGGCTAAAGCGTGC+TGG | 0.527008 | 3.2:-60622719 | MS.gene53860:CDS |
| AGGGAGCTTCTGGTTGCTAA+GGG | 0.527571 | 3.2:-60621987 | MS.gene53860:CDS |
| ATACTAGTGGAGGAAATCTC+CGG | 0.536362 | 3.2:-60622454 | MS.gene53860:CDS |
| AGCAAGCGAGAGAAGCTAGC+GGG | 0.542475 | 3.2:-60623364 | MS.gene53860:CDS |
| ATGGATCGAGGTCATCTACT+TGG | 0.544070 | 3.2:+60622558 | None:intergenic |
| GTCTTTGATGATGTCTATGA+GGG | 0.544217 | 3.2:+60623246 | None:intergenic |
| GGAGCATGGGATTCATCTGA+TGG | 0.544263 | 3.2:+60622539 | None:intergenic |
| TCGAGACAGCTTCGACGATG+AGG | 0.576310 | 3.2:-60622360 | MS.gene53860:CDS |
| AAAACGAAATTATTACAAAG+TGG | 0.576401 | 3.2:+60621957 | None:intergenic |
| TTTGGCGTTGTAGAGCTTGG+CGG | 0.578554 | 3.2:+60623292 | None:intergenic |
| ATAGAGAGATGGGGTTGGAA+GGG | 0.584366 | 3.2:-60622178 | MS.gene53860:CDS |
| AGCAGGCCAAAATTCACTCG+TGG | 0.590104 | 3.2:-60622512 | MS.gene53860:CDS |
| GAATTCTTGCGTGATAATTG+TGG | 0.593473 | 3.2:+60622431 | None:intergenic |
| GATTCCTCTGAGAATACTAG+TGG | 0.594699 | 3.2:-60622467 | MS.gene53860:CDS |
| TCCTCTGAGAATACTAGTGG+AGG | 0.597257 | 3.2:-60622464 | MS.gene53860:CDS |
| TGATACCAAGCATCCAGAGA+CGG | 0.598650 | 3.2:-60622327 | MS.gene53860:CDS |
| GAATTCCAGTAGTGTGTCGT+CGG | 0.603076 | 3.2:-60622414 | MS.gene53860:CDS |
| TCTTGCGTGATAATTGTGGC+CGG | 0.603393 | 3.2:+60622435 | None:intergenic |
| TCCATCAACGACATCGTCGG+AGG | 0.611948 | 3.2:+60622218 | None:intergenic |
| GCAGGCCAAAATTCACTCGT+GGG | 0.618628 | 3.2:-60622511 | MS.gene53860:CDS |
| AAATCCATCAACGACATCGT+CGG | 0.618750 | 3.2:+60622215 | None:intergenic |
| GTCGTTGATGGATTTGTTAG+GGG | 0.618908 | 3.2:-60622207 | MS.gene53860:CDS |
| ATCTGCGAGAGAAGCAGTGG+CGG | 0.621972 | 3.2:-60622294 | MS.gene53860:CDS |
| ATTATCTGCGAGAGAAGCAG+TGG | 0.640834 | 3.2:-60622297 | MS.gene53860:CDS |
| TTATGAGGAAATGTCAGCTG+CGG | 0.647602 | 3.2:-60623389 | MS.gene53860:CDS |
| GGGAGACTGATAGAGAGATG+GGG | 0.649131 | 3.2:-60622187 | MS.gene53860:CDS |
| CAAGCATCCAGAGACGGGGA+GGG | 0.651075 | 3.2:-60622321 | MS.gene53860:CDS |
| TCCTCCACTAGTATTCTCAG+AGG | 0.651316 | 3.2:+60622463 | None:intergenic |
| CCAAGCATCCAGAGACGGGG+AGG | 0.656073 | 3.2:-60622322 | MS.gene53860:CDS |
| TTAGCGAATCAACAAAGACC+CGG | 0.663952 | 3.2:-60623322 | MS.gene53860:CDS |
| GGGATTCATCTGATGGATCG+AGG | 0.669034 | 3.2:+60622546 | None:intergenic |
| GAGCAAGCGAGAGAAGCTAG+CGG | 0.703074 | 3.2:-60623365 | MS.gene53860:CDS |
| ATACCAAGCATCCAGAGACG+GGG | 0.703842 | 3.2:-60622325 | MS.gene53860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAAATATTCTTTTTTT+AGG | + | chr3.2:60622403-60622422 | None:intergenic | 10.0% |
| !!! | TATTGATCAATTTTATTTTA+TGG | - | chr3.2:60622527-60622546 | MS.gene53860:CDS | 10.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | - | chr3.2:60622314-60622333 | MS.gene53860:CDS | 15.0% |
| !! | AAAACGAAATTATTACAAAG+TGG | + | chr3.2:60623416-60623435 | None:intergenic | 20.0% |
| !! | GACATATATATAAAAAGAAG+TGG | - | chr3.2:60622214-60622233 | MS.gene53860:CDS | 20.0% |
| ! | AAGGTATATATTAAGTGATG+AGG | - | chr3.2:60623217-60623236 | MS.gene53860:intron | 25.0% |
| ! | AATTAGTTAGTTACTCTACA+AGG | + | chr3.2:60622274-60622293 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTTACTCTACAA+GGG | + | chr3.2:60622273-60622292 | None:intergenic | 25.0% |
| !!! | TATTTTCTTACATTTGAGAC+CGG | - | chr3.2:60622413-60622432 | MS.gene53860:CDS | 25.0% |
| !!! | TTTTCTGATGATGATTATGA+AGG | - | chr3.2:60623245-60623264 | MS.gene53860:CDS | 25.0% |
| AACACATCCTACAAAAACTA+TGG | + | chr3.2:60623361-60623380 | None:intergenic | 30.0% | |
| TTCATTGATATGGAAGATCT+TGG | - | chr3.2:60622613-60622632 | MS.gene53860:CDS | 30.0% | |
| ! | CTGCTTCATTTTCATTGATA+TGG | - | chr3.2:60622603-60622622 | MS.gene53860:CDS | 30.0% |
| ! | TTTTTGTAGGATGTGTTCAA+GGG | - | chr3.2:60623364-60623383 | MS.gene53860:CDS | 30.0% |
| AAACCAACAAAAAAGATCGC+AGG | - | chr3.2:60622151-60622170 | MS.gene53860:intron | 35.0% | |
| AACTAACTAATTACTCCCTC+TGG | - | chr3.2:60622282-60622301 | MS.gene53860:CDS | 35.0% | |
| AAGGTGAAGATGATGAAGAT+GGG | - | chr3.2:60623264-60623283 | MS.gene53860:CDS | 35.0% | |
| ACACACTTGTTCTATTTGCA+TGG | - | chr3.2:60623301-60623320 | MS.gene53860:CDS | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | - | chr3.2:60623314-60623333 | MS.gene53860:CDS | 35.0% | |
| GAATTCTTGCGTGATAATTG+TGG | + | chr3.2:60622942-60622961 | None:intergenic | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | - | chr3.2:60623313-60623332 | MS.gene53860:CDS | 35.0% | |
| TCATTATACAATACTCCCTC+CGG | + | chr3.2:60622435-60622454 | None:intergenic | 35.0% | |
| TTCTTACATATGAGACCAGA+GGG | + | chr3.2:60622300-60622319 | None:intergenic | 35.0% | |
| TTTCTTACATATGAGACCAG+AGG | + | chr3.2:60622301-60622320 | None:intergenic | 35.0% | |
| ! | AAGCCTTTAAAGACAAGCTT+CGG | - | chr3.2:60622637-60622656 | MS.gene53860:CDS | 35.0% |
| ! | AGCAGAAGCTTTTCACAATT+CGG | - | chr3.2:60622735-60622754 | MS.gene53860:CDS | 35.0% |
| ! | CTTGTAGCCATAGTTTTTGT+AGG | - | chr3.2:60623351-60623370 | MS.gene53860:CDS | 35.0% |
| ! | GGAAAACCACTTCTTTTTAG+AGG | + | chr3.2:60622252-60622271 | None:intergenic | 35.0% |
| ! | GTTTTTGTAGGATGTGTTCA+AGG | - | chr3.2:60623363-60623382 | MS.gene53860:CDS | 35.0% |
| ! | TCGGGAAAGAACATTTTATG+AGG | - | chr3.2:60621966-60621985 | MS.gene53860:CDS | 35.0% |
| ! | TTCCTTCCTCTAAAAAGAAG+TGG | - | chr3.2:60622243-60622262 | MS.gene53860:CDS | 35.0% |
| !! | AACCACTTCTTTTTAGAGGA+AGG | + | chr3.2:60622248-60622267 | None:intergenic | 35.0% |
| !! | ATGTCGTTGATGGATTTGTT+AGG | - | chr3.2:60623161-60623180 | MS.gene53860:intron | 35.0% |
| !! | GTCTTTGATGATGTCTATGA+GGG | + | chr3.2:60622127-60622146 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGATTTTGGATA+GGG | + | chr3.2:60622719-60622738 | None:intergenic | 35.0% |
| !! | TGTCGTTGATGGATTTGTTA+GGG | - | chr3.2:60623162-60623181 | MS.gene53860:intron | 35.0% |
| !!! | TTACCTGCGATCTTTTTTGT+TGG | + | chr3.2:60622157-60622176 | None:intergenic | 35.0% |
| AAATCCATCAACGACATCGT+CGG | + | chr3.2:60623158-60623177 | None:intergenic | 40.0% | |
| AGGTGAAGATGATGAAGATG+GGG | - | chr3.2:60623265-60623284 | MS.gene53860:CDS | 40.0% | |
| ATACTAGTGGAGGAAATCTC+CGG | - | chr3.2:60622916-60622935 | MS.gene53860:intron | 40.0% | |
| GAAGGTGAAGATGATGAAGA+TGG | - | chr3.2:60623263-60623282 | MS.gene53860:CDS | 40.0% | |
| TAGCCGAAGCTTGTCTTTAA+AGG | + | chr3.2:60622643-60622662 | None:intergenic | 40.0% | |
| TGTGAAAAGCTTCTGCTGTT+TGG | + | chr3.2:60622732-60622751 | None:intergenic | 40.0% | |
| TTAGCGAATCAACAAAGACC+CGG | - | chr3.2:60622048-60622067 | MS.gene53860:intron | 40.0% | |
| TTATGAGGAAATGTCAGCTG+CGG | - | chr3.2:60621981-60622000 | MS.gene53860:CDS | 40.0% | |
| ! | ATGAGGGTTCGACTTTTAGA+GGG | + | chr3.2:60622111-60622130 | None:intergenic | 40.0% |
| ! | GATTCCTCTGAGAATACTAG+TGG | - | chr3.2:60622903-60622922 | MS.gene53860:intron | 40.0% |
| ! | TATGAGGGTTCGACTTTTAG+AGG | + | chr3.2:60622112-60622131 | None:intergenic | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | - | chr3.2:60622417-60622436 | MS.gene53860:CDS | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | - | chr3.2:60622416-60622435 | MS.gene53860:CDS | 40.0% |
| !! | AGCTTCTGCTGTTTGGATTT+TGG | + | chr3.2:60622725-60622744 | None:intergenic | 40.0% |
| !! | CGTCTTTGATGATGTCTATG+AGG | + | chr3.2:60622128-60622147 | None:intergenic | 40.0% |
| !! | CTGCTGTTTGGATTTTGGAT+AGG | + | chr3.2:60622720-60622739 | None:intergenic | 40.0% |
| !! | GTCGTTGATGGATTTGTTAG+GGG | - | chr3.2:60623163-60623182 | MS.gene53860:intron | 40.0% |
| AGGGATGTCTGATGTTGGAA+TGG | + | chr3.2:60622700-60622719 | None:intergenic | 45.0% | |
| ATAGAGAGATGGGGTTGGAA+GGG | - | chr3.2:60623192-60623211 | MS.gene53860:intron | 45.0% | |
| ATGGATCGAGGTCATCTACT+TGG | + | chr3.2:60622815-60622834 | None:intergenic | 45.0% | |
| ATTATCTGCGAGAGAAGCAG+TGG | - | chr3.2:60623073-60623092 | MS.gene53860:intron | 45.0% | |
| GAATTCCAGTAGTGTGTCGT+CGG | - | chr3.2:60622956-60622975 | MS.gene53860:intron | 45.0% | |
| GGGATGTCTGATGTTGGAAT+GGG | + | chr3.2:60622699-60622718 | None:intergenic | 45.0% | |
| TCCTCCACTAGTATTCTCAG+AGG | + | chr3.2:60622910-60622929 | None:intergenic | 45.0% | |
| TCTTGCGTGATAATTGTGGC+CGG | + | chr3.2:60622938-60622957 | None:intergenic | 45.0% | |
| TGATACCAAGCATCCAGAGA+CGG | - | chr3.2:60623043-60623062 | MS.gene53860:intron | 45.0% | |
| TGGATAGGGATGTCTGATGT+TGG | + | chr3.2:60622705-60622724 | None:intergenic | 45.0% | |
| TGTCTGAGTCGTGATGAGTT+TGG | + | chr3.2:60622782-60622801 | None:intergenic | 45.0% | |
| ! | AAGTCACTACACGCCCTTTT+CGG | + | chr3.2:60622989-60623008 | None:intergenic | 45.0% |
| ! | TCCTCTGAGAATACTAGTGG+AGG | - | chr3.2:60622906-60622925 | MS.gene53860:intron | 45.0% |
| ! | TGAAGATGGGGAAAGTGCAT+TGG | - | chr3.2:60623277-60623296 | MS.gene53860:CDS | 45.0% |
| !! | CTTTTAGAGGGTGGTTGCTT+TGG | + | chr3.2:60622099-60622118 | None:intergenic | 45.0% |
| AGCAGGCCAAAATTCACTCG+TGG | - | chr3.2:60622858-60622877 | MS.gene53860:intron | 50.0% | |
| AGGGGAGACTGATAGAGAGA+TGG | - | chr3.2:60623181-60623200 | MS.gene53860:intron | 50.0% | |
| ATACCAAGCATCCAGAGACG+GGG | - | chr3.2:60623045-60623064 | MS.gene53860:intron | 50.0% | |
| CGTCGGATCCATTCCGAAAA+GGG | - | chr3.2:60622973-60622992 | MS.gene53860:intron | 50.0% | |
| GACTGATAGAGAGATGGGGT+TGG | - | chr3.2:60623187-60623206 | MS.gene53860:intron | 50.0% | |
| GATACCAAGCATCCAGAGAC+GGG | - | chr3.2:60623044-60623063 | MS.gene53860:intron | 50.0% | |
| GATAGAGAGATGGGGTTGGA+AGG | - | chr3.2:60623191-60623210 | MS.gene53860:intron | 50.0% | |
| GATGTGTTCAAGGGAGCTTC+TGG | - | chr3.2:60623373-60623392 | MS.gene53860:CDS | 50.0% | |
| GCAGGCCAAAATTCACTCGT+GGG | - | chr3.2:60622859-60622878 | MS.gene53860:intron | 50.0% | |
| GGAGCATGGGATTCATCTGA+TGG | + | chr3.2:60622834-60622853 | None:intergenic | 50.0% | |
| GGATGCTTGGTATCATCGTC+TGG | + | chr3.2:60623038-60623057 | None:intergenic | 50.0% | |
| GGGAGACTGATAGAGAGATG+GGG | - | chr3.2:60623183-60623202 | MS.gene53860:intron | 50.0% | |
| GGGGAGACTGATAGAGAGAT+GGG | - | chr3.2:60623182-60623201 | MS.gene53860:intron | 50.0% | |
| TCGTCGGATCCATTCCGAAA+AGG | - | chr3.2:60622972-60622991 | MS.gene53860:intron | 50.0% | |
| TGCTTTGGCGTTGTAGAGCT+TGG | + | chr3.2:60622084-60622103 | None:intergenic | 50.0% | |
| TTTGGCGTTGTAGAGCTTGG+CGG | + | chr3.2:60622081-60622100 | None:intergenic | 50.0% | |
| ! | AAGGGAGCTTCTGGTTGCTA+AGG | - | chr3.2:60623382-60623401 | MS.gene53860:CDS | 50.0% |
| ! | ACTACACGCCCTTTTCGGAA+TGG | + | chr3.2:60622984-60623003 | None:intergenic | 50.0% |
| ! | AGGGAGCTTCTGGTTGCTAA+GGG | - | chr3.2:60623383-60623402 | MS.gene53860:CDS | 50.0% |
| ! | GAGCTCCCACGAGTGAATTT+TGG | + | chr3.2:60622867-60622886 | None:intergenic | 50.0% |
| ! | GGGATTCATCTGATGGATCG+AGG | + | chr3.2:60622827-60622846 | None:intergenic | 50.0% |
| !! | AGGGTTCGACTTTTAGAGGG+TGG | + | chr3.2:60622108-60622127 | None:intergenic | 50.0% |
| !! | GAAGCATAAGGGCACTGCTT+TGG | - | chr3.2:60623325-60623344 | MS.gene53860:CDS | 50.0% |
| !! | GTGAATTTTGGCCTGCTAGC+TGG | + | chr3.2:60622855-60622874 | None:intergenic | 50.0% |
| AAGCTTCGGCTAAAGCGTGC+TGG | - | chr3.2:60622651-60622670 | MS.gene53860:CDS | 55.0% | |
| AATCCCATGCTCCAGCTAGC+AGG | - | chr3.2:60622841-60622860 | MS.gene53860:intron | 55.0% | |
| ACCTCCGACGATGTCGTTGA+TGG | - | chr3.2:60623151-60623170 | MS.gene53860:intron | 55.0% | |
| AGATGGGGTTGGAAGGGTCA+AGG | - | chr3.2:60623198-60623217 | MS.gene53860:intron | 55.0% | |
| AGCAAGCGAGAGAAGCTAGC+GGG | - | chr3.2:60622006-60622025 | MS.gene53860:CDS | 55.0% | |
| ATCTGCGAGAGAAGCAGTGG+CGG | - | chr3.2:60623076-60623095 | MS.gene53860:intron | 55.0% | |
| GAGCAAGCGAGAGAAGCTAG+CGG | - | chr3.2:60622005-60622024 | MS.gene53860:CDS | 55.0% | |
| TCCATCAACGACATCGTCGG+AGG | + | chr3.2:60623155-60623174 | None:intergenic | 55.0% | |
| TCGAGACAGCTTCGACGATG+AGG | - | chr3.2:60623010-60623029 | MS.gene53860:intron | 55.0% | |
| TGGATCCGACGACACACTAC+TGG | + | chr3.2:60622964-60622983 | None:intergenic | 55.0% | |
| !! | TAAAGCGTGCTGGCTCTGCT+TGG | - | chr3.2:60622661-60622680 | MS.gene53860:CDS | 55.0% |
| AGAAGCGGCAGAAGCTGCAG+CGG | - | chr3.2:60623103-60623122 | MS.gene53860:intron | 60.0% | |
| AGAGCTTGGCGGTGTAGAGC+CGG | + | chr3.2:60622070-60622089 | None:intergenic | 60.0% | |
| AGCAGTGGCGGCACAAGAAG+CGG | - | chr3.2:60623088-60623107 | MS.gene53860:intron | 60.0% | |
| CAAGCATCCAGAGACGGGGA+GGG | - | chr3.2:60623049-60623068 | MS.gene53860:intron | 60.0% | |
| GATAATGCCCTCCCCGTCTC+TGG | + | chr3.2:60623059-60623078 | None:intergenic | 60.0% | |
| TGGCCTGCTAGCTGGAGCAT+GGG | + | chr3.2:60622847-60622866 | None:intergenic | 60.0% | |
| TTGGCCTGCTAGCTGGAGCA+TGG | + | chr3.2:60622848-60622867 | None:intergenic | 60.0% | |
| AGAAGCTGCAGCGGAGGCTG+AGG | - | chr3.2:60623112-60623131 | MS.gene53860:intron | 65.0% | |
| CCAAGCATCCAGAGACGGGG+AGG | - | chr3.2:60623048-60623067 | MS.gene53860:intron | 65.0% | |
| CCTCCCCGTCTCTGGATGCT+TGG | + | chr3.2:60623051-60623070 | None:intergenic | 65.0% | |
| GAGCTTGGCGGTGTAGAGCC+GGG | + | chr3.2:60622069-60622088 | None:intergenic | 65.0% | |
| GCTGAGGCTGAGGCTGCAAC+AGG | - | chr3.2:60623128-60623147 | MS.gene53860:intron | 65.0% | |
| AGCGGCAGAAGCTGCAGCGG+AGG | - | chr3.2:60623106-60623125 | MS.gene53860:intron | 70.0% | |
| TGCAGCGGAGGCTGAGGCTG+AGG | - | chr3.2:60623118-60623137 | MS.gene53860:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 60621955 | 60623437 | 60621955 | ID=MS.gene53860 |
| chr3.2 | mRNA | 60621955 | 60623437 | 60621955 | ID=MS.gene53860.t1;Parent=MS.gene53860 |
| chr3.2 | exon | 60623220 | 60623437 | 60623220 | ID=MS.gene53860.t1.exon1;Parent=MS.gene53860.t1 |
| chr3.2 | CDS | 60623220 | 60623437 | 60623220 | ID=cds.MS.gene53860.t1;Parent=MS.gene53860.t1 |
| chr3.2 | exon | 60622173 | 60622763 | 60622173 | ID=MS.gene53860.t1.exon2;Parent=MS.gene53860.t1 |
| chr3.2 | CDS | 60622173 | 60622763 | 60622173 | ID=cds.MS.gene53860.t1;Parent=MS.gene53860.t1 |
| chr3.2 | exon | 60621955 | 60622063 | 60621955 | ID=MS.gene53860.t1.exon3;Parent=MS.gene53860.t1 |
| chr3.2 | CDS | 60621955 | 60622063 | 60621955 | ID=cds.MS.gene53860.t1;Parent=MS.gene53860.t1 |
| Gene Sequence |
| Protein sequence |
