Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53933.t1 | KEH32799.1 | 91.4 | 509 | 44 | 0 | 1 | 509 | 1 | 509 | 2.50E-261 | 911 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53933.t1 | F4I8I0 | 46.9 | 495 | 212 | 8 | 1 | 460 | 1 | 479 | 6.9e-103 | 375.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53933.t1 | A0A072USK4 | 91.4 | 509 | 44 | 0 | 1 | 509 | 1 | 509 | 1.8e-261 | 911.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058492 | MS.gene53933 | 0.809472 | 1.86E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53933.t1 | MTR_3g006320 | 93.320 | 509 | 34 | 0 | 1 | 509 | 1 | 509 | 0.0 | 975 |
| MS.gene53933.t1 | MTR_1g069420 | 59.398 | 532 | 178 | 11 | 1 | 509 | 1 | 517 | 0.0 | 578 |
| MS.gene53933.t1 | MTR_4g030960 | 59.515 | 536 | 180 | 12 | 1 | 509 | 1 | 526 | 0.0 | 570 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53933.t1 | AT1G71360 | 47.115 | 520 | 223 | 10 | 15 | 499 | 16 | 518 | 8.74e-144 | 426 |
| MS.gene53933.t1 | AT1G71360 | 47.115 | 520 | 223 | 10 | 15 | 499 | 42 | 544 | 4.18e-143 | 425 |
| MS.gene53933.t1 | AT1G22882 | 54.372 | 366 | 139 | 4 | 150 | 491 | 213 | 574 | 6.26e-129 | 390 |
| MS.gene53933.t1 | AT4G23950 | 45.706 | 326 | 158 | 5 | 191 | 509 | 170 | 483 | 2.02e-87 | 280 |
| MS.gene53933.t1 | AT4G23950 | 45.566 | 327 | 158 | 6 | 191 | 509 | 170 | 484 | 6.47e-86 | 276 |
Find 80 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATATTTGTCTTTGTTTC+TGG | 0.123881 | 3.2:+1025874 | None:intergenic |
| TATTTATATGTAGATGTTTC+TGG | 0.164077 | 3.2:-1026403 | MS.gene53933:intron |
| ACTAGTACTCCAATTGATTT+TGG | 0.171618 | 3.2:+1026021 | None:intergenic |
| TGACTTGAATTTATCGGTTT+TGG | 0.187353 | 3.2:-1025270 | MS.gene53933:CDS |
| TTATAAAGTTTCTTTGTCTT+TGG | 0.237986 | 3.2:-1027759 | MS.gene53933:CDS |
| GACAAAACCAATGATCTTAT+TGG | 0.249939 | 3.2:-1026247 | MS.gene53933:CDS |
| ACCGACGATTGGATCTTTCT+TGG | 0.277128 | 3.2:-1025707 | MS.gene53933:CDS |
| CAAATATTCCTCATCAGATT+TGG | 0.295282 | 3.2:+1026321 | None:intergenic |
| GGCTCAAAGATTTGTTCTTC+AGG | 0.304534 | 3.2:-1025657 | MS.gene53933:CDS |
| CTGATATATGCTCAAGAAAA+TGG | 0.306472 | 3.2:-1025512 | MS.gene53933:CDS |
| TTATCTTGACTTGAATTTAT+CGG | 0.318188 | 3.2:-1025276 | MS.gene53933:CDS |
| TTGAGCATGGTTGAAGTTTA+CGG | 0.319953 | 3.2:-1025566 | MS.gene53933:CDS |
| CGAGTTACCAATAAGATCAT+TGG | 0.346327 | 3.2:+1026240 | None:intergenic |
| TTTAGATATCGAACCCATTT+CGG | 0.354077 | 3.2:+1025632 | None:intergenic |
| TACTCTATGTATTACACTTC+CGG | 0.360472 | 3.2:+1025994 | None:intergenic |
| ATGTTAGTGATCTTGATTCT+TGG | 0.364251 | 3.2:-1024987 | MS.gene53933:CDS |
| TCATGTTCCTTTCTATTATG+TGG | 0.379171 | 3.2:+1026160 | None:intergenic |
| CAACAAGTTGGCAGGATGCC+GGG | 0.384773 | 3.2:-1025335 | MS.gene53933:CDS |
| ATAAGTTGTGGCAATGGATA+TGG | 0.386092 | 3.2:-1027695 | MS.gene53933:CDS |
| AGATGTTTCTGGAGAAGTTC+CGG | 0.391702 | 3.2:-1026392 | MS.gene53933:CDS |
| ATGAGGAATATTTGACTAAA+GGG | 0.392267 | 3.2:-1026312 | MS.gene53933:CDS |
| AAAGAGTATAGCAAAGATAT+AGG | 0.394814 | 3.2:-1025203 | MS.gene53933:CDS |
| TCTTCGGAATCCGTGTTCTT+CGG | 0.404866 | 3.2:-1025855 | MS.gene53933:CDS |
| TTGTCTGCAGCCGTGCCGCT+CGG | 0.408230 | 3.2:-1026076 | MS.gene53933:CDS |
| AATGGTAAATAGAAATGTTC+CGG | 0.409342 | 3.2:-1025378 | MS.gene53933:CDS |
| GTGAATCTTCAAAGTCACTA+TGG | 0.412172 | 3.2:-1025608 | MS.gene53933:CDS |
| TTGAGCCTGCTTCACATTTG+AGG | 0.413911 | 3.2:+1025673 | None:intergenic |
| TTCCGGTTGCGGTATCAAAC+TGG | 0.419772 | 3.2:-1026375 | MS.gene53933:CDS |
| AGAACAGTGATGATGATGTT+TGG | 0.430324 | 3.2:-1025445 | MS.gene53933:CDS |
| GCAACAAGTTGGCAGGATGC+CGG | 0.433804 | 3.2:-1025336 | MS.gene53933:CDS |
| TTCCAGTTTGATACCGCAAC+CGG | 0.435748 | 3.2:+1026373 | None:intergenic |
| TGTTCTTCAGGAACCGAAAT+GGG | 0.436891 | 3.2:-1025645 | MS.gene53933:CDS |
| TTCTTCTGAGAACGTTGAAA+TGG | 0.441280 | 3.2:-1025396 | MS.gene53933:CDS |
| TTGTTCTTCAGGAACCGAAA+TGG | 0.444428 | 3.2:-1025646 | MS.gene53933:CDS |
| CTTATTGGTAACTCGCTTGT+TGG | 0.450729 | 3.2:-1026232 | MS.gene53933:CDS |
| CAGTTAGTTCCAAAATCAAT+TGG | 0.451584 | 3.2:-1026030 | MS.gene53933:CDS |
| TGCAATTGGATCATATACTT+AGG | 0.461963 | 3.2:-1024948 | MS.gene53933:CDS |
| TACTGCCTCAAATGTGAAGC+AGG | 0.465363 | 3.2:-1025678 | MS.gene53933:CDS |
| GATGAGGAATATTTGACTAA+AGG | 0.473117 | 3.2:-1026313 | MS.gene53933:CDS |
| AACTTATCCATAAGCTGAAA+AGG | 0.474461 | 3.2:+1027711 | None:intergenic |
| TGGTTTATCCGACCGACGAT+TGG | 0.481196 | 3.2:-1025718 | MS.gene53933:CDS |
| CGTGCTTCATCGATCGGATC+CGG | 0.483570 | 3.2:+1025359 | None:intergenic |
| TTCTGGAGAAGTTCCGGTTG+CGG | 0.487332 | 3.2:-1026386 | MS.gene53933:CDS |
| GCAATTGGATCATATACTTA+GGG | 0.488218 | 3.2:-1024947 | MS.gene53933:CDS |
| TGTTGCCGTGCTTCATCGAT+CGG | 0.498822 | 3.2:+1025353 | None:intergenic |
| GTCTCGACGAATTCAAGAGC+AGG | 0.503431 | 3.2:-1026054 | MS.gene53933:CDS |
| AATTGGAGTACTAGTCCATC+CGG | 0.508594 | 3.2:-1026013 | MS.gene53933:CDS |
| GAAACAAAGACAAATATCTT+CGG | 0.521533 | 3.2:-1025871 | MS.gene53933:CDS |
| AACAAGTTGGCAGGATGCCG+GGG | 0.522411 | 3.2:-1025334 | MS.gene53933:CDS |
| GCTTCTAACAAAGAAGCTAA+AGG | 0.533192 | 3.2:-1025914 | MS.gene53933:CDS |
| TTCAGCTTATGGATAAGTTG+TGG | 0.543462 | 3.2:-1027707 | MS.gene53933:CDS |
| GTACATTCCACATAATAGAA+AGG | 0.548755 | 3.2:-1026167 | MS.gene53933:CDS |
| AATTACGCTTCATCATCAAA+AGG | 0.550801 | 3.2:-1025950 | MS.gene53933:CDS |
| AAGCACGGCAACAAGTTGGC+AGG | 0.551588 | 3.2:-1025343 | MS.gene53933:CDS |
| GTTGGTGAAGAAAATATAGA+CGG | 0.568726 | 3.2:-1026214 | MS.gene53933:CDS |
| GTAATACATAGAGTAGAGCC+AGG | 0.571111 | 3.2:-1025986 | MS.gene53933:CDS |
| TCTTTAGAGAAGGCTGCTAG+TGG | 0.572809 | 3.2:-1027794 | MS.gene53933:CDS |
| ACAAAGAAGATCTTTAGAGA+AGG | 0.579527 | 3.2:-1027804 | MS.gene53933:CDS |
| CTATGTATTACACTTCCGGA+TGG | 0.592663 | 3.2:+1025998 | None:intergenic |
| AGTTGTGGCAATGGATATGG+AGG | 0.595571 | 3.2:-1027692 | MS.gene53933:intron |
| GATGAAGCACGGCAACAAGT+TGG | 0.597273 | 3.2:-1025347 | MS.gene53933:CDS |
| CTTTAGAGAAGGCTGCTAGT+GGG | 0.597719 | 3.2:-1027793 | MS.gene53933:CDS |
| AGAAAGATCCAATCGTCGGT+CGG | 0.598915 | 3.2:+1025710 | None:intergenic |
| ATCTTGAGAACAGTATCCCC+CGG | 0.601238 | 3.2:+1025317 | None:intergenic |
| TATAAACTCCAAATCTGATG+AGG | 0.605409 | 3.2:-1026329 | MS.gene53933:CDS |
| TCAGAGTAGAAAGTCTCAGA+AGG | 0.610282 | 3.2:+1026274 | None:intergenic |
| ACTGGAACAAAGATGAGCAA+AGG | 0.611162 | 3.2:-1026357 | MS.gene53933:CDS |
| ACAAGTTGGCAGGATGCCGG+GGG | 0.614040 | 3.2:-1025333 | MS.gene53933:CDS |
| TTATGGATAAGTTGTGGCAA+TGG | 0.614532 | 3.2:-1027701 | MS.gene53933:CDS |
| TTCGTCGAGACCGAGCGGCA+CGG | 0.626595 | 3.2:+1026066 | None:intergenic |
| TCCAAGAAAGATCCAATCGT+CGG | 0.633621 | 3.2:+1025706 | None:intergenic |
| AATTTCTCTTCCGAAGAACA+CGG | 0.634829 | 3.2:+1025845 | None:intergenic |
| CGGATCCGATCGATGAAGCA+CGG | 0.639939 | 3.2:-1025358 | MS.gene53933:CDS |
| TCTCGACGAATTCAAGAGCA+GGG | 0.643708 | 3.2:-1026053 | MS.gene53933:CDS |
| TAATTGTATTCATCACCACC+TGG | 0.670479 | 3.2:+1025968 | None:intergenic |
| GTTCTCGAACGAGTTACGAT+CGG | 0.679894 | 3.2:+1025463 | None:intergenic |
| TCGAACGAGTTACGATCGGA+CGG | 0.703621 | 3.2:+1025467 | None:intergenic |
| TTGAATTCGTCGAGACCGAG+CGG | 0.704535 | 3.2:+1026061 | None:intergenic |
| TGCTGTTGAGAAAATGCTCG+AGG | 0.711275 | 3.2:-1025537 | MS.gene53933:CDS |
| ATACATAGAGTAGAGCCAGG+TGG | 0.769561 | 3.2:-1025983 | MS.gene53933:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCTTTAACAAAAAAATA+AGG | + | chr3.2:1025111-1025130 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTTGG+GGG | - | chr3.2:1025648-1025667 | MS.gene53933:CDS | 10.0% |
| !! | ATGTTCTTGAATATTTATTA+GGG | - | chr3.2:1025591-1025610 | MS.gene53933:CDS | 15.0% |
| !! | ATTCCAAAAAAATATAACAT+TGG | + | chr3.2:1025212-1025231 | None:intergenic | 15.0% |
| !! | TATGTTCTTGAATATTTATT+AGG | - | chr3.2:1025590-1025609 | MS.gene53933:CDS | 15.0% |
| !! | TTCAAAAATATCAAAATTCT+TGG | - | chr3.2:1025971-1025990 | MS.gene53933:CDS | 15.0% |
| !! | ATCACAATAGAGAAATAATT+TGG | - | chr3.2:1025900-1025919 | MS.gene53933:CDS | 20.0% |
| !! | ATTTGCCTATAAAAATAACA+TGG | + | chr3.2:1025283-1025302 | None:intergenic | 20.0% |
| !! | GCTAAAATTATTAGAAAACA+AGG | - | chr3.2:1025670-1025689 | MS.gene53933:CDS | 20.0% |
| !! | TAAATACTAATAATACCTTG+TGG | - | chr3.2:1025563-1025582 | MS.gene53933:CDS | 20.0% |
| !! | TAACAAAAAAATAAGGTCAT+CGG | + | chr3.2:1025104-1025123 | None:intergenic | 20.0% |
| !! | TATTACCAAAATAATGATCA+AGG | + | chr3.2:1027666-1027685 | None:intergenic | 20.0% |
| !! | TATTTATATGTAGATGTTTC+TGG | - | chr3.2:1026354-1026373 | MS.gene53933:CDS | 20.0% |
| !! | TTATAAAGTTTCTTTGTCTT+TGG | - | chr3.2:1024998-1025017 | MS.gene53933:intron | 20.0% |
| !! | TTGTTAAAGATATTGAAGTA+TGG | - | chr3.2:1025118-1025137 | MS.gene53933:intron | 20.0% |
| !!! | ATAAGAATGAGTTTAATTTG+TGG | + | chr3.2:1026321-1026340 | None:intergenic | 20.0% |
| !!! | GTTATCCATGTTATTTTTAT+AGG | - | chr3.2:1025275-1025294 | MS.gene53933:CDS | 20.0% |
| !!! | TGACCAATGTTATATTTTTT+TGG | - | chr3.2:1025206-1025225 | MS.gene53933:CDS | 20.0% |
| !!! | TTAAAAGATTTTGATTTGCA+TGG | - | chr3.2:1027011-1027030 | MS.gene53933:intron | 20.0% |
| !!! | TTATCTTGACTTGAATTTAT+CGG | - | chr3.2:1027481-1027500 | MS.gene53933:intron | 20.0% |
| ! | AATGGTAAATAGAAATGTTC+CGG | - | chr3.2:1027379-1027398 | MS.gene53933:intron | 25.0% |
| ! | ATGAGGAATATTTGACTAAA+GGG | - | chr3.2:1026445-1026464 | MS.gene53933:intron | 25.0% |
| ! | GAAACAAAGACAAATATCTT+CGG | - | chr3.2:1026886-1026905 | MS.gene53933:intron | 25.0% |
| ! | TGGTATTAATATGAAACACA+TGG | + | chr3.2:1025520-1025539 | None:intergenic | 25.0% |
| ! | TTAAAAAACATGTACGAACA+AGG | + | chr3.2:1025368-1025387 | None:intergenic | 25.0% |
| !! | AAAGAGTATAGCAAAGATAT+AGG | - | chr3.2:1027554-1027573 | MS.gene53933:intron | 25.0% |
| !! | AAGATATTTGTCTTTGTTTC+TGG | + | chr3.2:1026886-1026905 | None:intergenic | 25.0% |
| !! | TTCTTCCTTGATCATTATTT+TGG | - | chr3.2:1027658-1027677 | MS.gene53933:intron | 25.0% |
| !! | TTGAAAATTGATTTCTTGTC+TGG | - | chr3.2:1025247-1025266 | MS.gene53933:CDS | 25.0% |
| !!! | GTCTTTGGTTTTTATTTTGT+GGG | - | chr3.2:1025013-1025032 | MS.gene53933:intron | 25.0% |
| !!! | GTTAGTAGTTAATTTGTTAG+AGG | - | chr3.2:1025303-1025322 | MS.gene53933:CDS | 25.0% |
| !!! | GTTCGTACATGTTTTTTAAT+AGG | - | chr3.2:1025369-1025388 | MS.gene53933:CDS | 25.0% |
| !!! | TAGTTAATTTGTTAGAGACA+GGG | - | chr3.2:1025402-1025421 | MS.gene53933:CDS | 25.0% |
| !!! | TCTTTGGTTTTTATTTTGTG+GGG | - | chr3.2:1025014-1025033 | MS.gene53933:intron | 25.0% |
| !!! | TGTCTTTGGTTTTTATTTTG+TGG | - | chr3.2:1025012-1025031 | MS.gene53933:intron | 25.0% |
| !!! | TGTTTTGGTATTTGACTATA+TGG | - | chr3.2:1025144-1025163 | MS.gene53933:CDS | 25.0% |
| AAAAATAACATGGATAACCG+AGG | + | chr3.2:1025273-1025292 | None:intergenic | 30.0% | |
| AACTTATCCATAAGCTGAAA+AGG | + | chr3.2:1025049-1025068 | None:intergenic | 30.0% | |
| AATTACGCTTCATCATCAAA+AGG | - | chr3.2:1026807-1026826 | MS.gene53933:intron | 30.0% | |
| AGTATTGTGAAAGAGATTCA+GGG | + | chr3.2:1025451-1025470 | None:intergenic | 30.0% | |
| ATGTTAGTGATCTTGATTCT+TGG | - | chr3.2:1027770-1027789 | MS.gene53933:CDS | 30.0% | |
| CAAATATTCCTCATCAGATT+TGG | + | chr3.2:1026439-1026458 | None:intergenic | 30.0% | |
| CAGTTAGTTCCAAAATCAAT+TGG | - | chr3.2:1026727-1026746 | MS.gene53933:intron | 30.0% | |
| CTGATATATGCTCAAGAAAA+TGG | - | chr3.2:1027245-1027264 | MS.gene53933:intron | 30.0% | |
| GACAAAACCAATGATCTTAT+TGG | - | chr3.2:1026510-1026529 | MS.gene53933:intron | 30.0% | |
| GATGAGGAATATTTGACTAA+AGG | - | chr3.2:1026444-1026463 | MS.gene53933:intron | 30.0% | |
| GCAATTGGATCATATACTTA+GGG | - | chr3.2:1027810-1027829 | MS.gene53933:CDS | 30.0% | |
| GTACATTCCACATAATAGAA+AGG | - | chr3.2:1026590-1026609 | MS.gene53933:intron | 30.0% | |
| TACTCTATGTATTACACTTC+CGG | + | chr3.2:1026766-1026785 | None:intergenic | 30.0% | |
| TAGGGAATATAGAATGAGTT+TGG | - | chr3.2:1025609-1025628 | MS.gene53933:CDS | 30.0% | |
| TATAAACTCCAAATCTGATG+AGG | - | chr3.2:1026428-1026447 | MS.gene53933:intron | 30.0% | |
| TCAAGAACATAAAATCCACA+AGG | + | chr3.2:1025581-1025600 | None:intergenic | 30.0% | |
| TCAATTATGTAGCACTTGTT+TGG | - | chr3.2:1026014-1026033 | MS.gene53933:CDS | 30.0% | |
| TCATAAAGCTTCAAGTGTAA+TGG | + | chr3.2:1025540-1025559 | None:intergenic | 30.0% | |
| TCATGTTCCTTTCTATTATG+TGG | + | chr3.2:1026600-1026619 | None:intergenic | 30.0% | |
| TGCAATTGGATCATATACTT+AGG | - | chr3.2:1027809-1027828 | MS.gene53933:CDS | 30.0% | |
| TTAACAACATAAACTAGCAG+AGG | - | chr3.2:1025820-1025839 | MS.gene53933:CDS | 30.0% | |
| TTTAGATATCGAACCCATTT+CGG | + | chr3.2:1027128-1027147 | None:intergenic | 30.0% | |
| ! | ACAAAGAAGATCTTTAGAGA+AGG | - | chr3.2:1024953-1024972 | MS.gene53933:CDS | 30.0% |
| ! | GTTGGTGAAGAAAATATAGA+CGG | - | chr3.2:1026543-1026562 | MS.gene53933:intron | 30.0% |
| !! | ACTAGTACTCCAATTGATTT+TGG | + | chr3.2:1026739-1026758 | None:intergenic | 30.0% |
| !! | AGTAGTTAATTTGTTAGAGG+AGG | - | chr3.2:1025306-1025325 | MS.gene53933:CDS | 30.0% |
| !! | GTAGTTAATTTGTTAGAGAC+AGG | - | chr3.2:1025401-1025420 | MS.gene53933:CDS | 30.0% |
| !! | GTCTCATTTTTCTATGCAAT+TGG | - | chr3.2:1027795-1027814 | MS.gene53933:CDS | 30.0% |
| !!! | ATTGAAGTATGGTCTTGTTT+TGG | - | chr3.2:1025129-1025148 | MS.gene53933:intron | 30.0% |
| !!! | TGACTTGAATTTATCGGTTT+TGG | - | chr3.2:1027487-1027506 | MS.gene53933:intron | 30.0% |
| !!! | TTTTGATTTGCATGGTAGTT+TGG | - | chr3.2:1027019-1027038 | MS.gene53933:intron | 30.0% |
| AAAAACATGTACGAACAAGG+AGG | + | chr3.2:1025365-1025384 | None:intergenic | 35.0% | |
| AATTTCTCTTCCGAAGAACA+CGG | + | chr3.2:1026915-1026934 | None:intergenic | 35.0% | |
| AGGTAGAAATGTTAGTACCA+GGG | - | chr3.2:1025326-1025345 | MS.gene53933:CDS | 35.0% | |
| ATAAACACACACACAGTGAA+AGG | - | chr3.2:1026142-1026161 | MS.gene53933:CDS | 35.0% | |
| ATAAGTTGTGGCAATGGATA+TGG | - | chr3.2:1025062-1025081 | MS.gene53933:intron | 35.0% | |
| CGAGTTACCAATAAGATCAT+TGG | + | chr3.2:1026520-1026539 | None:intergenic | 35.0% | |
| GAAAACAAGGCAGAACTAAA+AGG | - | chr3.2:1025683-1025702 | MS.gene53933:CDS | 35.0% | |
| GCTTCTAACAAAGAAGCTAA+AGG | - | chr3.2:1026843-1026862 | MS.gene53933:intron | 35.0% | |
| GTGAATCTTCAAAGTCACTA+TGG | - | chr3.2:1027149-1027168 | MS.gene53933:intron | 35.0% | |
| TAATTGTATTCATCACCACC+TGG | + | chr3.2:1026792-1026811 | None:intergenic | 35.0% | |
| TGCTATGAGTTGTGACAAAA+AGG | - | chr3.2:1026227-1026246 | MS.gene53933:CDS | 35.0% | |
| TTATGGATAAGTTGTGGCAA+TGG | - | chr3.2:1025056-1025075 | MS.gene53933:intron | 35.0% | |
| TTCAGCTTATGGATAAGTTG+TGG | - | chr3.2:1025050-1025069 | MS.gene53933:intron | 35.0% | |
| TTGAGCATGGTTGAAGTTTA+CGG | - | chr3.2:1027191-1027210 | MS.gene53933:intron | 35.0% | |
| ! | AGAACAGTGATGATGATGTT+TGG | - | chr3.2:1027312-1027331 | MS.gene53933:intron | 35.0% |
| ! | ATTTTACTGCACATTGAGCA+TGG | - | chr3.2:1027178-1027197 | MS.gene53933:intron | 35.0% |
| ! | GAGTATTGTGAAAGAGATTC+AGG | + | chr3.2:1025452-1025471 | None:intergenic | 35.0% |
| ! | TGGTTTTCCTTTTCAGCTTA+TGG | - | chr3.2:1025039-1025058 | MS.gene53933:intron | 35.0% |
| ! | TTCTTCTGAGAACGTTGAAA+TGG | - | chr3.2:1027361-1027380 | MS.gene53933:intron | 35.0% |
| !! | TTTCTAGCTTCGTGAAATCA+CGG | + | chr3.2:1026084-1026103 | None:intergenic | 35.0% |
| !!! | GGTTTTTATTTTGTGGGGAT+TGG | - | chr3.2:1025019-1025038 | MS.gene53933:intron | 35.0% |
| AAACATCGATCTAGTCCTTC+GGG | - | chr3.2:1025484-1025503 | MS.gene53933:CDS | 40.0% | |
| ACTGGAACAAAGATGAGCAA+AGG | - | chr3.2:1026400-1026419 | MS.gene53933:intron | 40.0% | |
| CAAACATCGATCTAGTCCTT+CGG | - | chr3.2:1025483-1025502 | MS.gene53933:CDS | 40.0% | |
| CTATGTATTACACTTCCGGA+TGG | + | chr3.2:1026762-1026781 | None:intergenic | 40.0% | |
| GAAGGACTAGATCGATGTTT+GGG | + | chr3.2:1025484-1025503 | None:intergenic | 40.0% | |
| GAGGTAGAAATGTTAGTACC+AGG | - | chr3.2:1025325-1025344 | MS.gene53933:CDS | 40.0% | |
| GTAATACATAGAGTAGAGCC+AGG | - | chr3.2:1026771-1026790 | MS.gene53933:intron | 40.0% | |
| TCAGAGTAGAAAGTCTCAGA+AGG | + | chr3.2:1026486-1026505 | None:intergenic | 40.0% | |
| TCCAAGAAAGATCCAATCGT+CGG | + | chr3.2:1027054-1027073 | None:intergenic | 40.0% | |
| TGTGTGTGTGTTTATTCTCG+CGG | + | chr3.2:1026137-1026156 | None:intergenic | 40.0% | |
| TGTTAGAGACAGGGAAATGT+TGG | - | chr3.2:1025411-1025430 | MS.gene53933:CDS | 40.0% | |
| TGTTCTTCAGGAACCGAAAT+GGG | - | chr3.2:1027112-1027131 | MS.gene53933:intron | 40.0% | |
| TTGTTCTTCAGGAACCGAAA+TGG | - | chr3.2:1027111-1027130 | MS.gene53933:intron | 40.0% | |
| ! | AATTGGAGTACTAGTCCATC+CGG | - | chr3.2:1026744-1026763 | MS.gene53933:intron | 40.0% |
| ! | AGTGAAAGGTACATTGCAGT+CGG | - | chr3.2:1026156-1026175 | MS.gene53933:CDS | 40.0% |
| ! | ATTGATTTCTTGTCTGGCCT+CGG | - | chr3.2:1025253-1025272 | MS.gene53933:CDS | 40.0% |
| ! | CTTATTGGTAACTCGCTTGT+TGG | - | chr3.2:1026525-1026544 | MS.gene53933:intron | 40.0% |
| ! | GGCTCAAAGATTTGTTCTTC+AGG | - | chr3.2:1027100-1027119 | MS.gene53933:intron | 40.0% |
| !! | AGATGTTTCTGGAGAAGTTC+CGG | - | chr3.2:1026365-1026384 | MS.gene53933:CDS | 40.0% |
| !!! | ATCGGTTTTGGAGCAGTATT+TGG | - | chr3.2:1027499-1027518 | MS.gene53933:intron | 40.0% |
| !!! | TTAGGGACAATGCTGTTTTG+AGG | - | chr3.2:1027827-1027846 | MS.gene53933:CDS | 40.0% |
| AACATCGATCTAGTCCTTCG+GGG | - | chr3.2:1025485-1025504 | MS.gene53933:CDS | 45.0% | |
| ACAGGGAAATGTTGGTACCA+GGG | - | chr3.2:1025419-1025438 | MS.gene53933:CDS | 45.0% | |
| ACCGACGATTGGATCTTTCT+TGG | - | chr3.2:1027050-1027069 | MS.gene53933:intron | 45.0% | |
| AGAAAGATCCAATCGTCGGT+CGG | + | chr3.2:1027050-1027069 | None:intergenic | 45.0% | |
| AGTTGTGGCAATGGATATGG+AGG | - | chr3.2:1025065-1025084 | MS.gene53933:intron | 45.0% | |
| ATACATAGAGTAGAGCCAGG+TGG | - | chr3.2:1026774-1026793 | MS.gene53933:intron | 45.0% | |
| ATCTTGAGAACAGTATCCCC+CGG | + | chr3.2:1027443-1027462 | None:intergenic | 45.0% | |
| CATGCGACGAGGAATAGATA+TGG | + | chr3.2:1026292-1026311 | None:intergenic | 45.0% | |
| CGAAGGACTAGATCGATGTT+TGG | + | chr3.2:1025485-1025504 | None:intergenic | 45.0% | |
| GTTCTCGAACGAGTTACGAT+CGG | + | chr3.2:1027297-1027316 | None:intergenic | 45.0% | |
| TACTGCCTCAAATGTGAAGC+AGG | - | chr3.2:1027079-1027098 | MS.gene53933:intron | 45.0% | |
| TCTCGACGAATTCAAGAGCA+GGG | - | chr3.2:1026704-1026723 | MS.gene53933:intron | 45.0% | |
| TCTTCGGAATCCGTGTTCTT+CGG | - | chr3.2:1026902-1026921 | MS.gene53933:intron | 45.0% | |
| TGCTGTTGAGAAAATGCTCG+AGG | - | chr3.2:1027220-1027239 | MS.gene53933:intron | 45.0% | |
| TGTACGAACAAGGAGGTTCA+TGG | + | chr3.2:1025358-1025377 | None:intergenic | 45.0% | |
| TGTGGTAAAAACATGCGACG+AGG | + | chr3.2:1026303-1026322 | None:intergenic | 45.0% | |
| TTCCAGTTTGATACCGCAAC+CGG | + | chr3.2:1026387-1026406 | None:intergenic | 45.0% | |
| TTGAGCCTGCTTCACATTTG+AGG | + | chr3.2:1027087-1027106 | None:intergenic | 45.0% | |
| ! | ATCGATGTTTGGGACAACGA+AGG | + | chr3.2:1025474-1025493 | None:intergenic | 45.0% |
| ! | CTTTAGAGAAGGCTGCTAGT+GGG | - | chr3.2:1024964-1024983 | MS.gene53933:CDS | 45.0% |
| ! | TCTTTAGAGAAGGCTGCTAG+TGG | - | chr3.2:1024963-1024982 | MS.gene53933:CDS | 45.0% |
| !!! | GGTTTTGGAGCAGTATTTGG+AGG | - | chr3.2:1027502-1027521 | MS.gene53933:intron | 45.0% |
| !!! | ATAAAAAAAAATTTAAAACA+AGG | - | chr3.2:1025946-1025965 | MS.gene53933:CDS | 5.0% |
| !!! | GTTTTAAATTTTTTTTTATA+AGG | + | chr3.2:1025945-1025964 | None:intergenic | 5.0% |
| !!! | GTTTTTTTTTTTTTTTTTTT+GGG | - | chr3.2:1025646-1025665 | MS.gene53933:CDS | 5.0% |
| !!! | TGTTTTTTTTTTTTTTTTTT+TGG | - | chr3.2:1025645-1025664 | MS.gene53933:CDS | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTTG+GGG | - | chr3.2:1025647-1025666 | MS.gene53933:CDS | 5.0% |
| CAGGGAAATGTTGGTACCAG+GGG | - | chr3.2:1025420-1025439 | MS.gene53933:CDS | 50.0% | |
| CGAGAATCACAAACTGGACG+CGG | + | chr3.2:1026042-1026061 | None:intergenic | 50.0% | |
| GACAGGGAAATGTTGGTACC+AGG | - | chr3.2:1025418-1025437 | MS.gene53933:CDS | 50.0% | |
| GAGACGCGAGAATCACAAAC+TGG | + | chr3.2:1026048-1026067 | None:intergenic | 50.0% | |
| GATGAAGCACGGCAACAAGT+TGG | - | chr3.2:1027410-1027429 | MS.gene53933:intron | 50.0% | |
| GTCTCGACGAATTCAAGAGC+AGG | - | chr3.2:1026703-1026722 | MS.gene53933:intron | 50.0% | |
| GTGTGTGTTTATTCTCGCGG+TGG | + | chr3.2:1026134-1026153 | None:intergenic | 50.0% | |
| TCGAACGAGTTACGATCGGA+CGG | + | chr3.2:1027293-1027312 | None:intergenic | 50.0% | |
| TGGTTTATCCGACCGACGAT+TGG | - | chr3.2:1027039-1027058 | MS.gene53933:intron | 50.0% | |
| TGTTGCCGTGCTTCATCGAT+CGG | + | chr3.2:1027407-1027426 | None:intergenic | 50.0% | |
| TTCCGGTTGCGGTATCAAAC+TGG | - | chr3.2:1026382-1026401 | MS.gene53933:CDS | 50.0% | |
| TTGAATTCGTCGAGACCGAG+CGG | + | chr3.2:1026699-1026718 | None:intergenic | 50.0% | |
| ! | CAAGCTTTAGCCTCATCGCA+CGG | - | chr3.2:1026106-1026125 | MS.gene53933:CDS | 50.0% |
| ! | TTCTGGAGAAGTTCCGGTTG+CGG | - | chr3.2:1026371-1026390 | MS.gene53933:CDS | 50.0% |
| CGGATCCGATCGATGAAGCA+CGG | - | chr3.2:1027399-1027418 | MS.gene53933:intron | 55.0% | |
| CGTGCTTCATCGATCGGATC+CGG | + | chr3.2:1027401-1027420 | None:intergenic | 55.0% | |
| GAGATTCAGGGTTGAACCCC+TGG | + | chr3.2:1025439-1025458 | None:intergenic | 55.0% | |
| GAGGTTCATGGTTCGATCCC+TGG | + | chr3.2:1025346-1025365 | None:intergenic | 55.0% | |
| ! | AACAAGTTGGCAGGATGCCG+GGG | - | chr3.2:1027423-1027442 | MS.gene53933:intron | 55.0% |
| ! | AAGCACGGCAACAAGTTGGC+AGG | - | chr3.2:1027414-1027433 | MS.gene53933:intron | 55.0% |
| ! | CAACAAGTTGGCAGGATGCC+GGG | - | chr3.2:1027422-1027441 | MS.gene53933:intron | 55.0% |
| ! | GCAACAAGTTGGCAGGATGC+CGG | - | chr3.2:1027421-1027440 | MS.gene53933:intron | 55.0% |
| CATGGATAGCCTGTCCCCGA+AGG | + | chr3.2:1025502-1025521 | None:intergenic | 60.0% | |
| CGATCTAGTCCTTCGGGGAC+AGG | - | chr3.2:1025490-1025509 | MS.gene53933:CDS | 60.0% | |
| ! | ACAAGTTGGCAGGATGCCGG+GGG | - | chr3.2:1027424-1027443 | MS.gene53933:intron | 60.0% |
| TTCGTCGAGACCGAGCGGCA+CGG | + | chr3.2:1026694-1026713 | None:intergenic | 65.0% | |
| ! | TTGTCTGCAGCCGTGCCGCT+CGG | - | chr3.2:1026681-1026700 | MS.gene53933:intron | 65.0% |
| CGCGGTGGCACCGTGCGATG+AGG | + | chr3.2:1026119-1026138 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 1024927 | 1027852 | 1024927 | ID=MS.gene53933 |
| chr3.2 | mRNA | 1024927 | 1027852 | 1024927 | ID=MS.gene53933.t1;Parent=MS.gene53933 |
| chr3.2 | exon | 1027693 | 1027852 | 1027693 | ID=MS.gene53933.t1.exon1;Parent=MS.gene53933.t1 |
| chr3.2 | CDS | 1027693 | 1027852 | 1027693 | ID=cds.MS.gene53933.t1;Parent=MS.gene53933.t1 |
| chr3.2 | exon | 1025133 | 1026412 | 1025133 | ID=MS.gene53933.t1.exon2;Parent=MS.gene53933.t1 |
| chr3.2 | CDS | 1025133 | 1026412 | 1025133 | ID=cds.MS.gene53933.t1;Parent=MS.gene53933.t1 |
| chr3.2 | exon | 1024927 | 1025016 | 1024927 | ID=MS.gene53933.t1.exon3;Parent=MS.gene53933.t1 |
| chr3.2 | CDS | 1024927 | 1025016 | 1024927 | ID=cds.MS.gene53933.t1;Parent=MS.gene53933.t1 |
| Gene Sequence |
| Protein sequence |
