Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54154.t1 | XP_003615805.2 | 98.8 | 161 | 2 | 0 | 1 | 161 | 1 | 161 | 2.00E-77 | 298.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54154.t1 | A2Y3I2 | 85.7 | 126 | 18 | 0 | 36 | 161 | 66 | 191 | 6.9e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54154.t1 | G7KEB2 | 98.8 | 161 | 2 | 0 | 1 | 161 | 1 | 161 | 1.4e-77 | 298.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05777 | MS.gene54154 | 0.8238 | 1.14E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54154.t1 | MTR_5g072510 | 95.556 | 225 | 10 | 0 | 1 | 225 | 1 | 225 | 8.74e-129 | 362 |
| MS.gene54154.t1 | MTR_3g031830 | 75.000 | 180 | 41 | 2 | 3 | 178 | 4 | 183 | 1.40e-84 | 251 |
| MS.gene54154.t1 | MTR_4g094428 | 63.830 | 188 | 52 | 2 | 33 | 204 | 42 | 229 | 7.73e-82 | 244 |
| MS.gene54154.t1 | MTR_1g442860 | 80.000 | 125 | 25 | 0 | 37 | 161 | 65 | 189 | 6.10e-79 | 236 |
| MS.gene54154.t1 | MTR_1g075990 | 78.014 | 141 | 31 | 0 | 27 | 167 | 43 | 183 | 9.17e-76 | 227 |
| MS.gene54154.t1 | MTR_2g016110 | 67.550 | 151 | 48 | 1 | 20 | 170 | 19 | 168 | 1.60e-73 | 221 |
| MS.gene54154.t1 | MTR_2g076400 | 73.333 | 135 | 36 | 0 | 36 | 170 | 32 | 166 | 2.68e-72 | 218 |
| MS.gene54154.t1 | MTR_7g097030 | 79.104 | 134 | 28 | 0 | 34 | 167 | 61 | 194 | 3.51e-72 | 219 |
| MS.gene54154.t1 | MTR_1g069825 | 80.153 | 131 | 26 | 0 | 37 | 167 | 52 | 182 | 2.69e-71 | 217 |
| MS.gene54154.t1 | MTR_2g092950 | 72.441 | 127 | 35 | 0 | 34 | 160 | 20 | 146 | 4.95e-71 | 214 |
| MS.gene54154.t1 | MTR_4g079930 | 68.462 | 130 | 41 | 0 | 31 | 160 | 23 | 152 | 1.96e-70 | 213 |
| MS.gene54154.t1 | MTR_7g115700 | 67.568 | 148 | 42 | 4 | 36 | 180 | 26 | 170 | 4.75e-70 | 212 |
| MS.gene54154.t1 | MTR_1g080210 | 73.427 | 143 | 38 | 0 | 37 | 179 | 40 | 182 | 8.39e-69 | 209 |
| MS.gene54154.t1 | MTR_8g086350 | 72.800 | 125 | 34 | 0 | 36 | 160 | 30 | 154 | 2.80e-59 | 185 |
| MS.gene54154.t1 | MTR_1g114020 | 66.000 | 50 | 17 | 0 | 31 | 80 | 65 | 114 | 7.41e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54154.t1 | AT1G07090 | 67.021 | 188 | 52 | 2 | 1 | 186 | 1 | 180 | 1.80e-89 | 262 |
| MS.gene54154.t1 | AT5G58500 | 67.403 | 181 | 43 | 3 | 35 | 214 | 17 | 182 | 2.54e-84 | 248 |
| MS.gene54154.t1 | AT2G31160 | 73.885 | 157 | 40 | 1 | 13 | 168 | 29 | 185 | 4.83e-74 | 224 |
| MS.gene54154.t1 | AT2G42610 | 72.794 | 136 | 37 | 0 | 34 | 169 | 22 | 157 | 6.24e-72 | 217 |
| MS.gene54154.t1 | AT2G42610 | 72.794 | 136 | 37 | 0 | 34 | 169 | 22 | 157 | 6.24e-72 | 217 |
| MS.gene54154.t1 | AT5G28490 | 71.053 | 152 | 39 | 1 | 15 | 166 | 8 | 154 | 1.56e-70 | 214 |
| MS.gene54154.t1 | AT3G23290 | 81.746 | 126 | 23 | 0 | 36 | 161 | 47 | 172 | 3.11e-70 | 213 |
| MS.gene54154.t1 | AT3G04510 | 76.154 | 130 | 31 | 0 | 37 | 166 | 33 | 162 | 6.50e-68 | 207 |
| MS.gene54154.t1 | AT1G78815 | 71.200 | 125 | 36 | 0 | 36 | 160 | 39 | 163 | 1.23e-67 | 206 |
| MS.gene54154.t1 | AT4G18610 | 67.460 | 126 | 40 | 1 | 36 | 160 | 36 | 161 | 1.31e-63 | 196 |
| MS.gene54154.t1 | AT1G16910 | 66.165 | 133 | 45 | 0 | 33 | 165 | 19 | 151 | 5.84e-63 | 194 |
Find 71 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTCATCGGACGTCTT+AGG | 0.202990 | 5.4:-61628939 | MS.gene54154:CDS |
| CTGAAGTATCTTGATCAATT+TGG | 0.206713 | 5.4:-61629060 | MS.gene54154:CDS |
| CGGCTTGGTGTTGGTGTTGC+TGG | 0.267162 | 5.4:+61629192 | None:intergenic |
| CTGCACAGTGCTAGGGTTAA+TGG | 0.269012 | 5.4:+61629105 | None:intergenic |
| GTGATAGGTTGTCCGTATTT+CGG | 0.338189 | 5.4:-61629021 | MS.gene54154:CDS |
| CTTCCCCACGCTTGCTTAAG+AGG | 0.344190 | 5.4:+61628967 | None:intergenic |
| CGCTCTCATCGGACGTCTTA+GGG | 0.360799 | 5.4:-61628938 | MS.gene54154:CDS |
| TGTGACGGTGGTAGAATTAT+TGG | 0.361961 | 5.4:+61628657 | None:intergenic |
| GTTGGTGTTGCTGGTGATGA+AGG | 0.383238 | 5.4:+61629201 | None:intergenic |
| GATTTATCTGAGGGAAGTTA+AGG | 0.397608 | 5.4:-61628854 | MS.gene54154:CDS |
| GATGGTAACACCGAGAGAAT+TGG | 0.417561 | 5.4:-61628700 | MS.gene54154:CDS |
| AAAACTAAGGTGCACGTGAT+AGG | 0.426316 | 5.4:-61629036 | MS.gene54154:CDS |
| ATAAGGAACTCCTCTAGCTT+TGG | 0.428349 | 5.4:+61628822 | None:intergenic |
| ACGTCTTAGGGCTGCTTTCG+AGG | 0.442268 | 5.4:-61628926 | MS.gene54154:CDS |
| AGTCACAAAAGCGACGAGAC+TGG | 0.455576 | 5.4:-61629164 | MS.gene54154:CDS |
| GCGCAAGGAGAAGGTGGGTT+AGG | 0.457008 | 5.4:+61628994 | None:intergenic |
| GTGCTCCACTGCACAGTGCT+AGG | 0.462382 | 5.4:+61629097 | None:intergenic |
| TGTGGTTACGTAGATATTGT+TGG | 0.476151 | 5.4:+61629133 | None:intergenic |
| GGTGACGGTGGTGGTATTGA+TGG | 0.478331 | 5.4:-61628718 | MS.gene54154:CDS |
| CTTACCGCCCGAGTTCCAAA+TGG | 0.497179 | 5.4:+61628877 | None:intergenic |
| TCGGCAATGGAAGCTGCATC+TGG | 0.503318 | 5.4:-61629285 | None:intergenic |
| ACCTATTGTTAGTGTTAGTA+CGG | 0.504598 | 5.4:-61628635 | MS.gene54154:CDS |
| AAACCCGAGAGTAATCCATT+TGG | 0.505797 | 5.4:-61628892 | MS.gene54154:CDS |
| GACTCGTAGCGGCTTGGTGT+TGG | 0.507637 | 5.4:+61629183 | None:intergenic |
| CATTTGGAACTCGGGCGGTA+AGG | 0.509273 | 5.4:-61628876 | MS.gene54154:CDS |
| GCCGTACTAACACTAACAAT+AGG | 0.510181 | 5.4:+61628634 | None:intergenic |
| GGGTTAGGTTGTCCGAAATA+CGG | 0.513501 | 5.4:+61629009 | None:intergenic |
| GTTCCAAATGGATTACTCTC+GGG | 0.518325 | 5.4:+61628889 | None:intergenic |
| GTTGCTGGTGATGAAGGTTG+TGG | 0.519042 | 5.4:+61629207 | None:intergenic |
| AGTTCCAAATGGATTACTCT+CGG | 0.520097 | 5.4:+61628888 | None:intergenic |
| TGCTCCACTGCACAGTGCTA+GGG | 0.520641 | 5.4:+61629098 | None:intergenic |
| CTTGTCCTCTTAAGCAAGCG+TGG | 0.521556 | 5.4:-61628972 | MS.gene54154:CDS |
| AGGGCTGCTTTCGAGGAAAA+CGG | 0.523449 | 5.4:-61628919 | MS.gene54154:CDS |
| AGAGGACAAGCGCAAGGAGA+AGG | 0.525742 | 5.4:+61628985 | None:intergenic |
| GGTTGTGGTTGTGCTGCCTC+CGG | 0.526300 | 5.4:+61629222 | None:intergenic |
| GAGTAATCCATTTGGAACTC+GGG | 0.526440 | 5.4:-61628884 | MS.gene54154:CDS |
| AGAGTAATCCATTTGGAACT+CGG | 0.528993 | 5.4:-61628885 | MS.gene54154:CDS |
| GGACAAGCGCAAGGAGAAGG+TGG | 0.534211 | 5.4:+61628988 | None:intergenic |
| TTTGATGGTATTGACGGTGG+TGG | 0.538750 | 5.4:+61629252 | None:intergenic |
| GATGGTATTGACGGTGGTGG+TGG | 0.541936 | 5.4:+61629255 | None:intergenic |
| CTAGGGTTAATGGTGGTTTG+TGG | 0.548564 | 5.4:+61629115 | None:intergenic |
| GCGGTGAATAGTAGTGGACT+TGG | 0.557889 | 5.4:-61628739 | MS.gene54154:CDS |
| TTGTCCTCTTAAGCAAGCGT+GGG | 0.563836 | 5.4:-61628971 | MS.gene54154:CDS |
| AACACCAGCTCCAATTCTCT+CGG | 0.568073 | 5.4:+61628690 | None:intergenic |
| GGAAGTCTTGACGCTCTCAT+CGG | 0.568235 | 5.4:-61628949 | MS.gene54154:CDS |
| AGTGGACTTGGTGACGGTGG+TGG | 0.574244 | 5.4:-61628727 | MS.gene54154:CDS |
| GGCGGTAAGGATTTATCTGA+GGG | 0.577139 | 5.4:-61628863 | MS.gene54154:CDS |
| GGGCGGTAAGGATTTATCTG+AGG | 0.579521 | 5.4:-61628864 | MS.gene54154:CDS |
| TGTGGTTGTGCTGCCTCCGG+TGG | 0.598177 | 5.4:+61629225 | None:intergenic |
| ATTGCAGCAGCGGTGACAGT+GGG | 0.601286 | 5.4:+61628778 | None:intergenic |
| AACACTAACAATAGGTGTGA+CGG | 0.607101 | 5.4:+61628642 | None:intergenic |
| GCAATGGAAGCTGCATCTGG+TGG | 0.607187 | 5.4:-61629282 | MS.gene54154:CDS |
| TATTGCAGCAGCGGTGACAG+TGG | 0.608654 | 5.4:+61628777 | None:intergenic |
| GATGGTCAAGCCAAAGCTAG+AGG | 0.608868 | 5.4:-61628832 | MS.gene54154:CDS |
| TATCTGAGGGAAGTTAAGGA+TGG | 0.611775 | 5.4:-61628850 | MS.gene54154:CDS |
| GACAAGCGCAAGGAGAAGGT+GGG | 0.614541 | 5.4:+61628989 | None:intergenic |
| ACAGCAGCGGTGAATAGTAG+TGG | 0.615069 | 5.4:-61628745 | MS.gene54154:CDS |
| GAGAGAATTGGAGCTGGTGT+TGG | 0.623654 | 5.4:-61628688 | MS.gene54154:CDS |
| AGTTGATATTATTGCAGCAG+CGG | 0.629514 | 5.4:+61628768 | None:intergenic |
| GACGGTGGTAGAATTATTGG+TGG | 0.631458 | 5.4:+61628660 | None:intergenic |
| CACAGTGCTAGGGTTAATGG+TGG | 0.634530 | 5.4:+61629108 | None:intergenic |
| AATAGTAGTGGACTTGGTGA+CGG | 0.643866 | 5.4:-61628733 | MS.gene54154:CDS |
| TGCTTAAGAGGACAAGCGCA+AGG | 0.646571 | 5.4:+61628979 | None:intergenic |
| AACACCGAGAGAATTGGAGC+TGG | 0.649987 | 5.4:-61628694 | MS.gene54154:CDS |
| TTAACCCTAGCACTGTGCAG+TGG | 0.666567 | 5.4:-61629102 | MS.gene54154:CDS |
| AATAATATCAACTACAGCAG+CGG | 0.669859 | 5.4:-61628758 | MS.gene54154:CDS |
| TAATCCATTTGGAACTCGGG+CGG | 0.682868 | 5.4:-61628881 | MS.gene54154:CDS |
| AGTAGTGGACTTGGTGACGG+TGG | 0.690950 | 5.4:-61628730 | MS.gene54154:CDS |
| TGTCCTCTTAAGCAAGCGTG+GGG | 0.708587 | 5.4:-61628970 | MS.gene54154:CDS |
| ACTAACAATAGGTGTGACGG+TGG | 0.726512 | 5.4:+61628645 | None:intergenic |
| GCTGCTTTCGAGGAAAACGG+TGG | 0.733556 | 5.4:-61628916 | MS.gene54154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATCAATTTGGAAAAACTA+AGG | - | chr5.4:61628854-61628873 | MS.gene54154:CDS | 25.0% |
| ! | TTCCTTATGAGAAAAAGAAA+CGG | - | chr5.4:61629096-61629115 | MS.gene54154:CDS | 25.0% |
| AATAATATCAACTACAGCAG+CGG | - | chr5.4:61629145-61629164 | MS.gene54154:CDS | 30.0% | |
| ACCTATTGTTAGTGTTAGTA+CGG | - | chr5.4:61629268-61629287 | MS.gene54154:CDS | 30.0% | |
| ! | CTGAAGTATCTTGATCAATT+TGG | - | chr5.4:61628843-61628862 | MS.gene54154:CDS | 30.0% |
| ! | TTCCGTTTCTTTTTCTCATA+AGG | + | chr5.4:61629101-61629120 | None:intergenic | 30.0% |
| AACACTAACAATAGGTGTGA+CGG | + | chr5.4:61629264-61629283 | None:intergenic | 35.0% | |
| AATACCATCAAAAACACCAC+CGG | - | chr5.4:61628662-61628681 | MS.gene54154:CDS | 35.0% | |
| ATGAGAAAAAGAAACGGAAG+AGG | - | chr5.4:61629102-61629121 | MS.gene54154:CDS | 35.0% | |
| GATTTATCTGAGGGAAGTTA+AGG | - | chr5.4:61629049-61629068 | MS.gene54154:CDS | 35.0% | |
| TGTGGTTACGTAGATATTGT+TGG | + | chr5.4:61628773-61628792 | None:intergenic | 35.0% | |
| ! | AGAGTAATCCATTTGGAACT+CGG | - | chr5.4:61629018-61629037 | MS.gene54154:CDS | 35.0% |
| ! | AGTTGATATTATTGCAGCAG+CGG | + | chr5.4:61629138-61629157 | None:intergenic | 35.0% |
| !! | AGTTCCAAATGGATTACTCT+CGG | + | chr5.4:61629018-61629037 | None:intergenic | 35.0% |
| !! | GGTGTTTTTGATGGTATTGA+CGG | + | chr5.4:61628660-61628679 | None:intergenic | 35.0% |
| AAAACTAAGGTGCACGTGAT+AGG | - | chr5.4:61628867-61628886 | MS.gene54154:CDS | 40.0% | |
| AAACCCGAGAGTAATCCATT+TGG | - | chr5.4:61629011-61629030 | MS.gene54154:CDS | 40.0% | |
| GCCGTACTAACACTAACAAT+AGG | + | chr5.4:61629272-61629291 | None:intergenic | 40.0% | |
| GTGATAGGTTGTCCGTATTT+CGG | - | chr5.4:61628882-61628901 | MS.gene54154:CDS | 40.0% | |
| TATCTGAGGGAAGTTAAGGA+TGG | - | chr5.4:61629053-61629072 | MS.gene54154:CDS | 40.0% | |
| TGTGACGGTGGTAGAATTAT+TGG | + | chr5.4:61629249-61629268 | None:intergenic | 40.0% | |
| ! | ATAAGGAACTCCTCTAGCTT+TGG | + | chr5.4:61629084-61629103 | None:intergenic | 40.0% |
| ! | GAGTAATCCATTTGGAACTC+GGG | - | chr5.4:61629019-61629038 | MS.gene54154:CDS | 40.0% |
| !! | AATAGTAGTGGACTTGGTGA+CGG | - | chr5.4:61629170-61629189 | MS.gene54154:CDS | 40.0% |
| !! | GTTCCAAATGGATTACTCTC+GGG | + | chr5.4:61629017-61629036 | None:intergenic | 40.0% |
| !!! | GTTTTTGATGGTATTGACGG+TGG | + | chr5.4:61628657-61628676 | None:intergenic | 40.0% |
| AACACCAGCTCCAATTCTCT+CGG | + | chr5.4:61629216-61629235 | None:intergenic | 45.0% | |
| ACTAACAATAGGTGTGACGG+TGG | + | chr5.4:61629261-61629280 | None:intergenic | 45.0% | |
| CTAGGGTTAATGGTGGTTTG+TGG | + | chr5.4:61628791-61628810 | None:intergenic | 45.0% | |
| GACGGTGGTAGAATTATTGG+TGG | + | chr5.4:61629246-61629265 | None:intergenic | 45.0% | |
| GATGGTAACACCGAGAGAAT+TGG | - | chr5.4:61629203-61629222 | MS.gene54154:CDS | 45.0% | |
| GGCGGTAAGGATTTATCTGA+GGG | - | chr5.4:61629040-61629059 | MS.gene54154:CDS | 45.0% | |
| TTGTCCTCTTAAGCAAGCGT+GGG | - | chr5.4:61628932-61628951 | MS.gene54154:CDS | 45.0% | |
| ! | GGGTTAGGTTGTCCGAAATA+CGG | + | chr5.4:61628897-61628916 | None:intergenic | 45.0% |
| ! | TAATCCATTTGGAACTCGGG+CGG | - | chr5.4:61629022-61629041 | MS.gene54154:CDS | 45.0% |
| !! | TTTGATGGTATTGACGGTGG+TGG | + | chr5.4:61628654-61628673 | None:intergenic | 45.0% |
| AACACCGAGAGAATTGGAGC+TGG | - | chr5.4:61629209-61629228 | MS.gene54154:CDS | 50.0% | |
| ACAGCAGCGGTGAATAGTAG+TGG | - | chr5.4:61629158-61629177 | MS.gene54154:CDS | 50.0% | |
| ACCATCAAAAACACCACCGG+AGG | - | chr5.4:61628665-61628684 | MS.gene54154:CDS | 50.0% | |
| AGTCACAAAAGCGACGAGAC+TGG | - | chr5.4:61628739-61628758 | MS.gene54154:CDS | 50.0% | |
| CACAGTGCTAGGGTTAATGG+TGG | + | chr5.4:61628798-61628817 | None:intergenic | 50.0% | |
| CTGCACAGTGCTAGGGTTAA+TGG | + | chr5.4:61628801-61628820 | None:intergenic | 50.0% | |
| CTTGTCCTCTTAAGCAAGCG+TGG | - | chr5.4:61628931-61628950 | MS.gene54154:CDS | 50.0% | |
| GAGAGAATTGGAGCTGGTGT+TGG | - | chr5.4:61629215-61629234 | MS.gene54154:CDS | 50.0% | |
| GATGGTCAAGCCAAAGCTAG+AGG | - | chr5.4:61629071-61629090 | MS.gene54154:CDS | 50.0% | |
| GGAAGTCTTGACGCTCTCAT+CGG | - | chr5.4:61628954-61628973 | MS.gene54154:CDS | 50.0% | |
| GGGCGGTAAGGATTTATCTG+AGG | - | chr5.4:61629039-61629058 | MS.gene54154:CDS | 50.0% | |
| TGCTTAAGAGGACAAGCGCA+AGG | + | chr5.4:61628927-61628946 | None:intergenic | 50.0% | |
| TGTCCTCTTAAGCAAGCGTG+GGG | - | chr5.4:61628933-61628952 | MS.gene54154:CDS | 50.0% | |
| TTAACCCTAGCACTGTGCAG+TGG | - | chr5.4:61628801-61628820 | MS.gene54154:CDS | 50.0% | |
| ! | AGGGCTGCTTTCGAGGAAAA+CGG | - | chr5.4:61628984-61629003 | MS.gene54154:CDS | 50.0% |
| ! | GTTGCTGGTGATGAAGGTTG+TGG | + | chr5.4:61628699-61628718 | None:intergenic | 50.0% |
| ! | TTTTGTGACTCGTAGCGGCT+TGG | + | chr5.4:61628729-61628748 | None:intergenic | 50.0% |
| !! | GCGGTGAATAGTAGTGGACT+TGG | - | chr5.4:61629164-61629183 | MS.gene54154:CDS | 50.0% |
| !! | GTTGGTGTTGCTGGTGATGA+AGG | + | chr5.4:61628705-61628724 | None:intergenic | 50.0% |
| !!! | GTCGCTTTTGTGACTCGTAG+CGG | + | chr5.4:61628734-61628753 | None:intergenic | 50.0% |
| ACGCTCTCATCGGACGTCTT+AGG | - | chr5.4:61628964-61628983 | MS.gene54154:CDS | 55.0% | |
| AGAGGACAAGCGCAAGGAGA+AGG | + | chr5.4:61628921-61628940 | None:intergenic | 55.0% | |
| ATTGCAGCAGCGGTGACAGT+GGG | + | chr5.4:61629128-61629147 | None:intergenic | 55.0% | |
| CGCTCTCATCGGACGTCTTA+GGG | - | chr5.4:61628965-61628984 | MS.gene54154:CDS | 55.0% | |
| CTTACCGCCCGAGTTCCAAA+TGG | + | chr5.4:61629029-61629048 | None:intergenic | 55.0% | |
| CTTCCCCACGCTTGCTTAAG+AGG | + | chr5.4:61628939-61628958 | None:intergenic | 55.0% | |
| GACAAGCGCAAGGAGAAGGT+GGG | + | chr5.4:61628917-61628936 | None:intergenic | 55.0% | |
| TATTGCAGCAGCGGTGACAG+TGG | + | chr5.4:61629129-61629148 | None:intergenic | 55.0% | |
| TGCTCCACTGCACAGTGCTA+GGG | + | chr5.4:61628808-61628827 | None:intergenic | 55.0% | |
| ! | ACGTCTTAGGGCTGCTTTCG+AGG | - | chr5.4:61628977-61628996 | MS.gene54154:CDS | 55.0% |
| ! | CATTTGGAACTCGGGCGGTA+AGG | - | chr5.4:61629027-61629046 | MS.gene54154:CDS | 55.0% |
| ! | GCTGCTTTCGAGGAAAACGG+TGG | - | chr5.4:61628987-61629006 | MS.gene54154:CDS | 55.0% |
| ! | GGTGACGGTGGTGGTATTGA+TGG | - | chr5.4:61629185-61629204 | MS.gene54154:CDS | 55.0% |
| !! | AGTAGTGGACTTGGTGACGG+TGG | - | chr5.4:61629173-61629192 | MS.gene54154:CDS | 55.0% |
| !! | GATGGTATTGACGGTGGTGG+TGG | + | chr5.4:61628651-61628670 | None:intergenic | 55.0% |
| !! | GCCTCCGGTGGTGTTTTTGA+TGG | + | chr5.4:61628669-61628688 | None:intergenic | 55.0% |
| GGACAAGCGCAAGGAGAAGG+TGG | + | chr5.4:61628918-61628937 | None:intergenic | 60.0% | |
| GGTTGTGGTTGTGCTGCCTC+CGG | + | chr5.4:61628684-61628703 | None:intergenic | 60.0% | |
| GTGCTCCACTGCACAGTGCT+AGG | + | chr5.4:61628809-61628828 | None:intergenic | 60.0% | |
| ! | GCGCAAGGAGAAGGTGGGTT+AGG | + | chr5.4:61628912-61628931 | None:intergenic | 60.0% |
| !! | AGTGGACTTGGTGACGGTGG+TGG | - | chr5.4:61629176-61629195 | MS.gene54154:CDS | 60.0% |
| !! | CGGCTTGGTGTTGGTGTTGC+TGG | + | chr5.4:61628714-61628733 | None:intergenic | 60.0% |
| !! | GACTCGTAGCGGCTTGGTGT+TGG | + | chr5.4:61628723-61628742 | None:intergenic | 60.0% |
| TGTGGTTGTGCTGCCTCCGG+TGG | + | chr5.4:61628681-61628700 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61628624 | 61629301 | 61628624 | ID=MS.gene54154 |
| chr5.4 | mRNA | 61628624 | 61629301 | 61628624 | ID=MS.gene54154.t1;Parent=MS.gene54154 |
| chr5.4 | exon | 61628624 | 61629301 | 61628624 | ID=MS.gene54154.t1.exon1;Parent=MS.gene54154.t1 |
| chr5.4 | CDS | 61628624 | 61629301 | 61628624 | ID=cds.MS.gene54154.t1;Parent=MS.gene54154.t1 |
| Gene Sequence |
| Protein sequence |
