Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05777.t1 | XP_003599342.1 | 94.7 | 171 | 4 | 1 | 1 | 171 | 1 | 166 | 2.60E-72 | 282 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05777.t1 | A2Y3I2 | 91.1 | 123 | 11 | 0 | 49 | 171 | 69 | 191 | 3.7e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05777.t1 | G7IWX7 | 94.7 | 171 | 4 | 1 | 1 | 171 | 1 | 166 | 1.8e-72 | 282.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05777 | MS.gene061003 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene05777 | MS.gene064716 | 0.818816 | 1.61E-52 | -1.69E-46 |
| MS.gene05777 | MS.gene09801 | 0.803516 | 3.36E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene20032 | 0.804579 | 2.02E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene23423 | 0.805183 | 1.51E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene42296 | 0.809716 | 1.65E-50 | -1.69E-46 |
| MS.gene05777 | MS.gene44503 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene50209 | 0.818344 | 2.06E-52 | -1.69E-46 |
| MS.gene05777 | MS.gene54154 | 0.8238 | 1.14E-53 | -1.69E-46 |
| MS.gene05777 | MS.gene59847 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene65139 | 0.810817 | 9.55E-51 | -1.69E-46 |
| MS.gene05777 | MS.gene69443 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene77771 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene83355 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene05777 | MS.gene99631 | 0.815398 | 9.43E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05777.t1 | MTR_3g031830 | 94.681 | 188 | 5 | 1 | 1 | 188 | 1 | 183 | 3.79e-111 | 318 |
| MS.gene05777.t1 | MTR_5g072510 | 79.290 | 169 | 33 | 1 | 32 | 200 | 24 | 190 | 1.35e-93 | 274 |
| MS.gene05777.t1 | MTR_4g094428 | 80.597 | 134 | 26 | 0 | 44 | 177 | 43 | 176 | 3.27e-80 | 240 |
| MS.gene05777.t1 | MTR_1g442860 | 80.800 | 125 | 24 | 0 | 47 | 171 | 65 | 189 | 4.17e-78 | 234 |
| MS.gene05777.t1 | MTR_1g075990 | 71.341 | 164 | 43 | 1 | 18 | 177 | 20 | 183 | 1.92e-75 | 226 |
| MS.gene05777.t1 | MTR_2g016110 | 64.286 | 168 | 58 | 1 | 15 | 180 | 1 | 168 | 8.97e-74 | 222 |
| MS.gene05777.t1 | MTR_2g076400 | 74.453 | 137 | 35 | 0 | 44 | 180 | 30 | 166 | 3.79e-73 | 220 |
| MS.gene05777.t1 | MTR_7g097030 | 80.147 | 136 | 27 | 0 | 42 | 177 | 59 | 194 | 6.32e-73 | 221 |
| MS.gene05777.t1 | MTR_2g092950 | 72.263 | 137 | 38 | 0 | 34 | 170 | 10 | 146 | 1.09e-72 | 218 |
| MS.gene05777.t1 | MTR_4g079930 | 67.857 | 140 | 45 | 0 | 31 | 170 | 13 | 152 | 4.09e-72 | 217 |
| MS.gene05777.t1 | MTR_1g069825 | 81.679 | 131 | 24 | 0 | 47 | 177 | 52 | 182 | 1.28e-71 | 218 |
| MS.gene05777.t1 | MTR_7g115700 | 67.347 | 147 | 42 | 4 | 46 | 189 | 26 | 169 | 4.69e-69 | 209 |
| MS.gene05777.t1 | MTR_1g080210 | 78.400 | 125 | 27 | 0 | 47 | 171 | 40 | 164 | 2.13e-66 | 203 |
| MS.gene05777.t1 | MTR_8g086350 | 72.441 | 127 | 35 | 0 | 44 | 170 | 28 | 154 | 9.48e-59 | 184 |
| MS.gene05777.t1 | MTR_1g114020 | 68.889 | 45 | 14 | 0 | 46 | 90 | 70 | 114 | 2.04e-18 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05777.t1 | AT1G07090 | 79.755 | 163 | 27 | 1 | 41 | 197 | 25 | 187 | 3.14e-94 | 274 |
| MS.gene05777.t1 | AT5G58500 | 76.101 | 159 | 34 | 2 | 45 | 202 | 17 | 172 | 3.84e-87 | 256 |
| MS.gene05777.t1 | AT2G31160 | 80.303 | 132 | 26 | 0 | 47 | 178 | 54 | 185 | 9.67e-73 | 221 |
| MS.gene05777.t1 | AT2G42610 | 73.333 | 135 | 36 | 0 | 36 | 170 | 14 | 148 | 1.14e-72 | 219 |
| MS.gene05777.t1 | AT2G42610 | 73.333 | 135 | 36 | 0 | 36 | 170 | 14 | 148 | 1.14e-72 | 219 |
| MS.gene05777.t1 | AT3G23290 | 83.333 | 126 | 21 | 0 | 46 | 171 | 47 | 172 | 6.29e-70 | 213 |
| MS.gene05777.t1 | AT5G28490 | 72.917 | 144 | 38 | 1 | 33 | 176 | 12 | 154 | 2.84e-68 | 208 |
| MS.gene05777.t1 | AT3G04510 | 74.615 | 130 | 33 | 0 | 47 | 176 | 33 | 162 | 3.07e-66 | 203 |
| MS.gene05777.t1 | AT1G78815 | 68.000 | 125 | 40 | 0 | 46 | 170 | 39 | 163 | 7.45e-66 | 202 |
| MS.gene05777.t1 | AT4G18610 | 69.841 | 126 | 37 | 1 | 46 | 170 | 36 | 161 | 3.25e-65 | 201 |
| MS.gene05777.t1 | AT1G16910 | 56.725 | 171 | 63 | 3 | 19 | 189 | 2 | 161 | 3.67e-64 | 197 |
Find 81 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCCGGGTGTCCGTATTT+TGG | 0.255749 | 3.1:+49455743 | MS.gene05777:CDS |
| GCGCAGGGAGCAGGTGGATT+CGG | 0.274168 | 3.1:-49455770 | None:intergenic |
| GGGAATGATGGTGGTGGTGG+TGG | 0.284917 | 3.1:+49456031 | MS.gene05777:CDS |
| TTAAAATATCTTGATCAGTT+TGG | 0.301551 | 3.1:+49455704 | MS.gene05777:CDS |
| CGCAGGGAGCAGGTGGATTC+GGG | 0.310473 | 3.1:-49455769 | None:intergenic |
| GGTGGGAATGATGGTGGTGG+TGG | 0.315730 | 3.1:+49456028 | MS.gene05777:CDS |
| TAAAATATCTTGATCAGTTT+GGG | 0.320444 | 3.1:+49455705 | MS.gene05777:CDS |
| GGTGGTGCTGGTGGTGGTGC+TGG | 0.323818 | 3.1:-49455566 | None:intergenic |
| AAGACTAAAGTTCATTTATC+CGG | 0.366127 | 3.1:+49455728 | MS.gene05777:CDS |
| AACGGTGGTGCAGGTGATAT+TGG | 0.404899 | 3.1:+49456061 | MS.gene05777:CDS |
| AGTGGTGGTGGTGGGAATGA+TGG | 0.415179 | 3.1:+49456019 | MS.gene05777:CDS |
| GCAGGTGATATTGGTGGTAG+TGG | 0.419832 | 3.1:+49456070 | MS.gene05777:CDS |
| GGTGGTGGTAACGGTGGTGC+AGG | 0.423397 | 3.1:+49456052 | MS.gene05777:CDS |
| CGGCTTGGTGGTGCTGGTGG+TGG | 0.428913 | 3.1:-49455572 | None:intergenic |
| CTGCGCCTGTCCTTTAAAAC+AGG | 0.428946 | 3.1:+49455787 | MS.gene05777:CDS |
| GGTAGTAGTAGTGGTGGTGG+TGG | 0.436394 | 3.1:+49456010 | MS.gene05777:CDS |
| GAATTTACTTGAGGGAAGTA+AGG | 0.437407 | 3.1:+49455909 | MS.gene05777:CDS |
| TCGTAACGGCTTGGTGGTGC+TGG | 0.441836 | 3.1:-49455578 | None:intergenic |
| TTCCTTATGAGAAGAAGAAA+AGG | 0.447506 | 3.1:+49455957 | MS.gene05777:CDS |
| AAAGGACAGGCGCAGGGAGC+AGG | 0.450570 | 3.1:-49455779 | None:intergenic |
| GCTCCTGCTCCCTCAGAAGA+TGG | 0.450847 | 3.1:-49455461 | None:intergenic |
| GGTGGTGGGAATGATGGTGG+TGG | 0.461579 | 3.1:+49456025 | MS.gene05777:CDS |
| TGCAGTGACGGTTGCAGCTG+TGG | 0.462036 | 3.1:+49455988 | MS.gene05777:CDS |
| CCCTCCGGTTGTACGATAAC+CGG | 0.466649 | 3.1:-49455536 | None:intergenic |
| TCCTCCGGTTATCGTACAAC+CGG | 0.478970 | 3.1:+49455532 | MS.gene05777:CDS |
| GGTGGTGGTGGGAATGATGG+TGG | 0.499071 | 3.1:+49456022 | MS.gene05777:CDS |
| GACAACAACTTCTCCTCCTC+CGG | 0.503287 | 3.1:+49455517 | MS.gene05777:CDS |
| GTAGTAGTAGTGGTGGTGGT+GGG | 0.503465 | 3.1:+49456011 | MS.gene05777:CDS |
| AAATTACTATACTGTGGTAG+TGG | 0.508835 | 3.1:-49456131 | None:intergenic |
| GGGAGTTTGGACGCGTTGAT+CGG | 0.509647 | 3.1:+49455815 | MS.gene05777:CDS |
| ACAGCTGCAACCGTCACTGC+AGG | 0.519530 | 3.1:-49455986 | None:intergenic |
| CTGCATCGTACAAGTGTCAA+TGG | 0.520507 | 3.1:-49455659 | None:intergenic |
| CTGTCCTTTAAAACAGGCGT+GGG | 0.527732 | 3.1:+49455793 | MS.gene05777:CDS |
| AGACTAAAGTTCATTTATCC+GGG | 0.529885 | 3.1:+49455729 | MS.gene05777:CDS |
| AATTTACTTGAGGGAAGTAA+GGG | 0.533096 | 3.1:+49455910 | MS.gene05777:CDS |
| AGCTGTGAGAATTTACTTGA+GGG | 0.533450 | 3.1:+49455901 | MS.gene05777:CDS |
| GAGGGAAGTAAGGGAAGGAC+AGG | 0.534869 | 3.1:+49455919 | MS.gene05777:CDS |
| CGTCCTGAGTCTAATCCGTT+CGG | 0.540988 | 3.1:+49455872 | MS.gene05777:CDS |
| CCTGTCCTTTAAAACAGGCG+TGG | 0.541162 | 3.1:+49455792 | MS.gene05777:CDS |
| GATCCATCTTCTGAGGGAGC+AGG | 0.541891 | 3.1:+49455458 | MS.gene05777:CDS |
| GGATTCGGGTGTCCAAAATA+CGG | 0.542823 | 3.1:-49455755 | None:intergenic |
| TGTGATTCGTAACGGCTTGG+TGG | 0.546264 | 3.1:-49455584 | None:intergenic |
| GTGGGTAGTAGTAGTGGTGG+TGG | 0.546671 | 3.1:+49456007 | MS.gene05777:CDS |
| GGACAGGCGCAGGGAGCAGG+TGG | 0.553440 | 3.1:-49455776 | None:intergenic |
| GACGATGGAAGTTGTTCTGA+GGG | 0.557122 | 3.1:-49455485 | None:intergenic |
| CATCATGGATCCATCTTCTG+AGG | 0.558178 | 3.1:+49455451 | None:intergenic |
| AGAGCGGCCTACGAAGAAAA+CGG | 0.561578 | 3.1:+49455845 | MS.gene05777:CDS |
| AAGCTGTGAGAATTTACTTG+AGG | 0.565778 | 3.1:+49455900 | MS.gene05777:CDS |
| CGATGGAAGTTGTTCTGAGG+GGG | 0.569511 | 3.1:-49455483 | None:intergenic |
| TAACGGCTTGGTGGTGCTGG+TGG | 0.580690 | 3.1:-49455575 | None:intergenic |
| AAGGAAGAGACCTGCAGTGA+CGG | 0.585642 | 3.1:+49455976 | MS.gene05777:CDS |
| CTCACAGCTTTAGCACCGAA+CGG | 0.587078 | 3.1:-49455887 | None:intergenic |
| TGACGATGGAAGTTGTTCTG+AGG | 0.599930 | 3.1:-49455486 | None:intergenic |
| GGTGATATTGGTGGTAGTGG+TGG | 0.600155 | 3.1:+49456073 | MS.gene05777:CDS |
| ATCATGGATCCATCTTCTGA+GGG | 0.607629 | 3.1:+49455452 | None:intergenic |
| GAAGGACAGGCTAAAGCTAG+AGG | 0.609790 | 3.1:+49455932 | MS.gene05777:CDS |
| TTACTATACTGTGGTAGTGG+TGG | 0.610777 | 3.1:-49456128 | None:intergenic |
| TTGACACTTGTACGATGCAG+TGG | 0.614043 | 3.1:+49455662 | MS.gene05777:CDS |
| GCAGCTGTGGGTAGTAGTAG+TGG | 0.617196 | 3.1:+49456001 | MS.gene05777:CDS |
| TACTTGAGGGAAGTAAGGGA+AGG | 0.617339 | 3.1:+49455914 | MS.gene05777:CDS |
| GCAGTGACGGTTGCAGCTGT+GGG | 0.623308 | 3.1:+49455989 | MS.gene05777:CDS |
| GCACCGAACGGATTAGACTC+AGG | 0.627378 | 3.1:-49455875 | None:intergenic |
| TCCGGTTATCGTACAACCGG+AGG | 0.630981 | 3.1:+49455535 | MS.gene05777:CDS |
| GGTTGTACGATAACCGGAGG+AGG | 0.636221 | 3.1:-49455530 | None:intergenic |
| AAGGACAGGCTAAAGCTAGA+GGG | 0.636453 | 3.1:+49455933 | MS.gene05777:CDS |
| CCGGTTATCGTACAACCGGA+GGG | 0.641455 | 3.1:+49455536 | MS.gene05777:CDS |
| AATTTAAAATTACTATACTG+TGG | 0.643260 | 3.1:-49456137 | None:intergenic |
| GTCCTTTAAAACAGGCGTGG+GGG | 0.646779 | 3.1:+49455795 | MS.gene05777:CDS |
| GTTGTCGTTGTTGTTGACGA+TGG | 0.651302 | 3.1:-49455500 | None:intergenic |
| TCCGGTTGTACGATAACCGG+AGG | 0.653687 | 3.1:-49455533 | None:intergenic |
| GTGTCCAAAATACGGACACC+CGG | 0.654184 | 3.1:-49455747 | None:intergenic |
| TGTCCTTTAAAACAGGCGTG+GGG | 0.654817 | 3.1:+49455794 | MS.gene05777:CDS |
| GGTGCTGGTGAAGATCCCTC+CGG | 0.662485 | 3.1:-49455551 | None:intergenic |
| GGTGGTGCAGGTGATATTGG+TGG | 0.664797 | 3.1:+49456064 | MS.gene05777:CDS |
| ACGATGGAAGTTGTTCTGAG+GGG | 0.667946 | 3.1:-49455484 | None:intergenic |
| GCTGTGGGTAGTAGTAGTGG+TGG | 0.697637 | 3.1:+49456004 | MS.gene05777:CDS |
| CGAACGGATTAGACTCAGGA+CGG | 0.701071 | 3.1:-49455871 | None:intergenic |
| GCGGCCTACGAAGAAAACGG+AGG | 0.705208 | 3.1:+49455848 | MS.gene05777:CDS |
| CATCGTACAAGTGTCAATGG+TGG | 0.708974 | 3.1:-49455656 | None:intergenic |
| CAAGTGTCAATGGTGGCTTG+TGG | 0.716511 | 3.1:-49455649 | None:intergenic |
| GTTGATCGGAAGACTCAGAG+CGG | 0.812799 | 3.1:+49455829 | MS.gene05777:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATCTTGATCAGTTT+GGG | + | chr3.1:49455705-49455724 | MS.gene05777:CDS | 20.0% |
| !! | TTAAAATATCTTGATCAGTT+TGG | + | chr3.1:49455704-49455723 | MS.gene05777:CDS | 20.0% |
| ! | AAGACTAAAGTTCATTTATC+CGG | + | chr3.1:49455728-49455747 | MS.gene05777:CDS | 25.0% |
| AATTTACTTGAGGGAAGTAA+GGG | + | chr3.1:49455910-49455929 | MS.gene05777:CDS | 30.0% | |
| AGACTAAAGTTCATTTATCC+GGG | + | chr3.1:49455729-49455748 | MS.gene05777:CDS | 30.0% | |
| TTCCTTATGAGAAGAAGAAA+AGG | + | chr3.1:49455957-49455976 | MS.gene05777:CDS | 30.0% | |
| ! | TTCCTTTTCTTCTTCTCATA+AGG | - | chr3.1:49455962-49455981 | None:intergenic | 30.0% |
| AAGCTGTGAGAATTTACTTG+AGG | + | chr3.1:49455900-49455919 | MS.gene05777:CDS | 35.0% | |
| AGCTGTGAGAATTTACTTGA+GGG | + | chr3.1:49455901-49455920 | MS.gene05777:CDS | 35.0% | |
| GAATTTACTTGAGGGAAGTA+AGG | + | chr3.1:49455909-49455928 | MS.gene05777:CDS | 35.0% | |
| ! | GACGTTTTTGTGATTCGTAA+CGG | - | chr3.1:49455595-49455614 | None:intergenic | 35.0% |
| AATCACAAAAACGTCGAGAC+TGG | + | chr3.1:49455600-49455619 | MS.gene05777:CDS | 40.0% | |
| ! | TTTTGTGATTCGTAACGGCT+TGG | - | chr3.1:49455590-49455609 | None:intergenic | 40.0% |
| AAGGACAGGCTAAAGCTAGA+GGG | + | chr3.1:49455933-49455952 | MS.gene05777:CDS | 45.0% | |
| CATCGTACAAGTGTCAATGG+TGG | - | chr3.1:49455659-49455678 | None:intergenic | 45.0% | |
| CTGCATCGTACAAGTGTCAA+TGG | - | chr3.1:49455662-49455681 | None:intergenic | 45.0% | |
| GACGATGGAAGTTGTTCTGA+GGG | - | chr3.1:49455488-49455507 | None:intergenic | 45.0% | |
| GGATTCGGGTGTCCAAAATA+CGG | - | chr3.1:49455758-49455777 | None:intergenic | 45.0% | |
| TACTTGAGGGAAGTAAGGGA+AGG | + | chr3.1:49455914-49455933 | MS.gene05777:CDS | 45.0% | |
| TGACGATGGAAGTTGTTCTG+AGG | - | chr3.1:49455489-49455508 | None:intergenic | 45.0% | |
| TTGACACTTGTACGATGCAG+TGG | + | chr3.1:49455662-49455681 | MS.gene05777:CDS | 45.0% | |
| ! | ACGATGGAAGTTGTTCTGAG+GGG | - | chr3.1:49455487-49455506 | None:intergenic | 45.0% |
| ! | GTTGTCGTTGTTGTTGACGA+TGG | - | chr3.1:49455503-49455522 | None:intergenic | 45.0% |
| ! | TTATCCGGGTGTCCGTATTT+TGG | + | chr3.1:49455743-49455762 | MS.gene05777:CDS | 45.0% |
| !! | CTGTCCTTTAAAACAGGCGT+GGG | + | chr3.1:49455793-49455812 | MS.gene05777:CDS | 45.0% |
| !! | TGTCCTTTAAAACAGGCGTG+GGG | + | chr3.1:49455794-49455813 | MS.gene05777:CDS | 45.0% |
| !!! | ATGGTGGCTTGTGGTTTTGT+AGG | - | chr3.1:49455643-49455662 | None:intergenic | 45.0% |
| !!! | TGTTTTAAAGGACAGGCGCA+GGG | - | chr3.1:49455788-49455807 | None:intergenic | 45.0% |
| AACGGTGGTGCAGGTGATAT+TGG | + | chr3.1:49456061-49456080 | MS.gene05777:CDS | 50.0% | |
| AAGGAAGAGACCTGCAGTGA+CGG | + | chr3.1:49455976-49455995 | MS.gene05777:CDS | 50.0% | |
| AGAGCGGCCTACGAAGAAAA+CGG | + | chr3.1:49455845-49455864 | MS.gene05777:CDS | 50.0% | |
| CAAGTGTCAATGGTGGCTTG+TGG | - | chr3.1:49455652-49455671 | None:intergenic | 50.0% | |
| CGTCCTGAGTCTAATCCGTT+CGG | + | chr3.1:49455872-49455891 | MS.gene05777:CDS | 50.0% | |
| GAAGGACAGGCTAAAGCTAG+AGG | + | chr3.1:49455932-49455951 | MS.gene05777:CDS | 50.0% | |
| GACAACAACTTCTCCTCCTC+CGG | + | chr3.1:49455517-49455536 | MS.gene05777:CDS | 50.0% | |
| GTGTCCAAAATACGGACACC+CGG | - | chr3.1:49455750-49455769 | None:intergenic | 50.0% | |
| GTTGATCGGAAGACTCAGAG+CGG | + | chr3.1:49455829-49455848 | MS.gene05777:CDS | 50.0% | |
| TCCTCCGGTTATCGTACAAC+CGG | + | chr3.1:49455532-49455551 | MS.gene05777:CDS | 50.0% | |
| ! | CTCACAGCTTTAGCACCGAA+CGG | - | chr3.1:49455890-49455909 | None:intergenic | 50.0% |
| ! | GCAGGTGATATTGGTGGTAG+TGG | + | chr3.1:49456070-49456089 | MS.gene05777:CDS | 50.0% |
| ! | TGTGATTCGTAACGGCTTGG+TGG | - | chr3.1:49455587-49455606 | None:intergenic | 50.0% |
| !! | CCTGTCCTTTAAAACAGGCG+TGG | + | chr3.1:49455792-49455811 | MS.gene05777:CDS | 50.0% |
| !! | CGAACGGATTAGACTCAGGA+CGG | - | chr3.1:49455874-49455893 | None:intergenic | 50.0% |
| !! | CGATGGAAGTTGTTCTGAGG+GGG | - | chr3.1:49455486-49455505 | None:intergenic | 50.0% |
| !! | CTGCGCCTGTCCTTTAAAAC+AGG | + | chr3.1:49455787-49455806 | MS.gene05777:CDS | 50.0% |
| !! | GGTGATATTGGTGGTAGTGG+TGG | + | chr3.1:49456073-49456092 | MS.gene05777:CDS | 50.0% |
| !! | GTAGTAGTAGTGGTGGTGGT+GGG | + | chr3.1:49456011-49456030 | MS.gene05777:CDS | 50.0% |
| !! | GTCCTTTAAAACAGGCGTGG+GGG | + | chr3.1:49455795-49455814 | MS.gene05777:CDS | 50.0% |
| !!! | CCACGCCTGTTTTAAAGGAC+AGG | - | chr3.1:49455795-49455814 | None:intergenic | 50.0% |
| !!! | CTGTTTTAAAGGACAGGCGC+AGG | - | chr3.1:49455789-49455808 | None:intergenic | 50.0% |
| AAAACAGGCGTGGGGGAGTT+TGG | + | chr3.1:49455802-49455821 | MS.gene05777:CDS | 55.0% | |
| CCCTCCGGTTGTACGATAAC+CGG | - | chr3.1:49455539-49455558 | None:intergenic | 55.0% | |
| CCGGTTATCGTACAACCGGA+GGG | + | chr3.1:49455536-49455555 | MS.gene05777:CDS | 55.0% | |
| GAGGGAAGTAAGGGAAGGAC+AGG | + | chr3.1:49455919-49455938 | MS.gene05777:CDS | 55.0% | |
| GCAGCTGTGGGTAGTAGTAG+TGG | + | chr3.1:49456001-49456020 | MS.gene05777:CDS | 55.0% | |
| GCTGTGGGTAGTAGTAGTGG+TGG | + | chr3.1:49456004-49456023 | MS.gene05777:CDS | 55.0% | |
| GGTGGTGCAGGTGATATTGG+TGG | + | chr3.1:49456064-49456083 | MS.gene05777:CDS | 55.0% | |
| GGTTGTACGATAACCGGAGG+AGG | - | chr3.1:49455533-49455552 | None:intergenic | 55.0% | |
| GTGGGTAGTAGTAGTGGTGG+TGG | + | chr3.1:49456007-49456026 | MS.gene05777:CDS | 55.0% | |
| TCCGGTTATCGTACAACCGG+AGG | + | chr3.1:49455535-49455554 | MS.gene05777:CDS | 55.0% | |
| TCCGGTTGTACGATAACCGG+AGG | - | chr3.1:49455536-49455555 | None:intergenic | 55.0% | |
| ! | ACGGCCTCCGTTTTCTTCGT+AGG | - | chr3.1:49455855-49455874 | None:intergenic | 55.0% |
| ! | GATCCATCTTCTGAGGGAGC+AGG | + | chr3.1:49455458-49455477 | MS.gene05777:CDS | 55.0% |
| ! | GGGAGTTTGGACGCGTTGAT+CGG | + | chr3.1:49455815-49455834 | MS.gene05777:CDS | 55.0% |
| !! | AATGATGGTGGTGGTGGTGG+TGG | + | chr3.1:49456034-49456053 | MS.gene05777:CDS | 55.0% |
| !! | AGTGGTGGTGGTGGGAATGA+TGG | + | chr3.1:49456019-49456038 | MS.gene05777:CDS | 55.0% |
| !! | CTCCCCCACGCCTGTTTTAA+AGG | - | chr3.1:49455800-49455819 | None:intergenic | 55.0% |
| !! | GCACCGAACGGATTAGACTC+AGG | - | chr3.1:49455878-49455897 | None:intergenic | 55.0% |
| !! | GGTAGTAGTAGTGGTGGTGG+TGG | + | chr3.1:49456010-49456029 | MS.gene05777:CDS | 55.0% |
| ACAGCTGCAACCGTCACTGC+AGG | - | chr3.1:49455989-49456008 | None:intergenic | 60.0% | |
| GCAGTGACGGTTGCAGCTGT+GGG | + | chr3.1:49455989-49456008 | MS.gene05777:CDS | 60.0% | |
| GCGGCCTACGAAGAAAACGG+AGG | + | chr3.1:49455848-49455867 | MS.gene05777:CDS | 60.0% | |
| GCTCCTGCTCCCTCAGAAGA+TGG | - | chr3.1:49455464-49455483 | None:intergenic | 60.0% | |
| TGCAGTGACGGTTGCAGCTG+TGG | + | chr3.1:49455988-49456007 | MS.gene05777:CDS | 60.0% | |
| !! | GGGAATGATGGTGGTGGTGG+TGG | + | chr3.1:49456031-49456050 | MS.gene05777:CDS | 60.0% |
| !! | GGTGCTGGTGAAGATCCCTC+CGG | - | chr3.1:49455554-49455573 | None:intergenic | 60.0% |
| !! | GGTGGGAATGATGGTGGTGG+TGG | + | chr3.1:49456028-49456047 | MS.gene05777:CDS | 60.0% |
| !! | GGTGGTGGGAATGATGGTGG+TGG | + | chr3.1:49456025-49456044 | MS.gene05777:CDS | 60.0% |
| !! | GGTGGTGGTGGGAATGATGG+TGG | + | chr3.1:49456022-49456041 | MS.gene05777:CDS | 60.0% |
| !! | GGTGGTGGTGGTGGTGGTAA+CGG | + | chr3.1:49456043-49456062 | MS.gene05777:CDS | 60.0% |
| !! | TAACGGCTTGGTGGTGCTGG+TGG | - | chr3.1:49455578-49455597 | None:intergenic | 60.0% |
| !! | TCGTAACGGCTTGGTGGTGC+TGG | - | chr3.1:49455581-49455600 | None:intergenic | 60.0% |
| AAAGGACAGGCGCAGGGAGC+AGG | - | chr3.1:49455782-49455801 | None:intergenic | 65.0% | |
| ! | CGCAGGGAGCAGGTGGATTC+GGG | - | chr3.1:49455772-49455791 | None:intergenic | 65.0% |
| ! | GCGCAGGGAGCAGGTGGATT+CGG | - | chr3.1:49455773-49455792 | None:intergenic | 65.0% |
| !! | GATGGTGGTGGTGGTGGTGG+TGG | + | chr3.1:49456037-49456056 | MS.gene05777:CDS | 65.0% |
| !! | GGTGGTGGTAACGGTGGTGC+AGG | + | chr3.1:49456052-49456071 | MS.gene05777:CDS | 65.0% |
| !! | GGTGGTGGTGGTGGTAACGG+TGG | + | chr3.1:49456046-49456065 | MS.gene05777:CDS | 65.0% |
| !! | CGGCTTGGTGGTGCTGGTGG+TGG | - | chr3.1:49455575-49455594 | None:intergenic | 70.0% |
| !! | GGTGGTGCTGGTGGTGGTGC+TGG | - | chr3.1:49455569-49455588 | None:intergenic | 70.0% |
| GGACAGGCGCAGGGAGCAGG+TGG | - | chr3.1:49455779-49455798 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 49455455 | 49456147 | 49455455 | ID=MS.gene05777 |
| chr3.1 | mRNA | 49455455 | 49456147 | 49455455 | ID=MS.gene05777.t1;Parent=MS.gene05777 |
| chr3.1 | exon | 49455455 | 49456147 | 49455455 | ID=MS.gene05777.t1.exon1;Parent=MS.gene05777.t1 |
| chr3.1 | CDS | 49455455 | 49456147 | 49455455 | ID=cds.MS.gene05777.t1;Parent=MS.gene05777.t1 |
| Gene Sequence |
| Protein sequence |
