Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54192.t1 | XP_024640082.1 | 86.4 | 184 | 14 | 3 | 1 | 184 | 1 | 173 | 5.60E-78 | 300.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54192.t1 | Q84R94 | 43.6 | 163 | 77 | 3 | 17 | 167 | 54 | 213 | 9.1e-21 | 101.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54192.t1 | G7JYL9 | 86.4 | 184 | 14 | 3 | 1 | 184 | 1 | 173 | 5.2e-78 | 300.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene54192.t1 | TF | Tify |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060503 | MS.gene54192 | 0.820841 | 5.54E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54192.t1 | MTR_5g013530 | 86.413 | 184 | 14 | 3 | 1 | 184 | 1 | 173 | 6.28e-111 | 313 |
MS.gene54192.t1 | MTR_5g013530 | 85.897 | 156 | 11 | 3 | 29 | 184 | 7 | 151 | 9.88e-90 | 259 |
MS.gene54192.t1 | MTR_5g013520 | 83.553 | 152 | 18 | 3 | 30 | 181 | 1 | 145 | 9.39e-87 | 251 |
MS.gene54192.t1 | MTR_5g013515 | 71.034 | 145 | 27 | 5 | 31 | 168 | 1 | 137 | 6.14e-64 | 193 |
MS.gene54192.t1 | MTR_2g042900 | 47.273 | 165 | 43 | 7 | 25 | 163 | 99 | 245 | 8.82e-35 | 123 |
MS.gene54192.t1 | MTR_2g042900 | 37.500 | 168 | 39 | 7 | 25 | 136 | 99 | 256 | 1.29e-19 | 83.6 |
MS.gene54192.t1 | MTR_2g044910 | 30.172 | 116 | 72 | 1 | 40 | 146 | 11 | 126 | 2.42e-13 | 65.1 |
MS.gene54192.t1 | MTR_2g044910 | 30.172 | 116 | 72 | 1 | 40 | 146 | 54 | 169 | 5.45e-13 | 64.7 |
MS.gene54192.t1 | MTR_8g021380 | 31.298 | 131 | 84 | 3 | 19 | 144 | 79 | 208 | 6.72e-13 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54192.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 53 | 184 | 1.33e-27 | 102 |
MS.gene54192.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 119 | 250 | 9.75e-27 | 102 |
MS.gene54192.t1 | AT1G19180 | 43.284 | 134 | 70 | 4 | 37 | 166 | 119 | 250 | 9.75e-27 | 102 |
MS.gene54192.t1 | AT1G74950 | 39.130 | 138 | 72 | 3 | 37 | 164 | 112 | 247 | 1.66e-22 | 91.3 |
MS.gene54192.t1 | AT1G74950 | 40.000 | 110 | 56 | 2 | 37 | 136 | 112 | 221 | 3.38e-17 | 76.6 |
MS.gene54192.t1 | AT1G17380 | 35.714 | 126 | 73 | 2 | 33 | 150 | 58 | 183 | 9.19e-16 | 73.2 |
MS.gene54192.t1 | AT1G72450 | 36.066 | 122 | 66 | 3 | 39 | 152 | 101 | 218 | 1.52e-15 | 72.8 |
MS.gene54192.t1 | AT1G17380 | 35.714 | 126 | 73 | 2 | 33 | 150 | 87 | 212 | 2.75e-15 | 72.0 |
MS.gene54192.t1 | AT5G20900 | 37.719 | 114 | 58 | 3 | 44 | 147 | 57 | 167 | 7.38e-15 | 69.7 |
MS.gene54192.t1 | AT1G70700 | 36.538 | 104 | 62 | 2 | 44 | 144 | 119 | 221 | 2.01e-12 | 63.9 |
MS.gene54192.t1 | AT1G17380 | 33.929 | 112 | 66 | 2 | 33 | 136 | 87 | 198 | 5.28e-11 | 59.7 |
MS.gene54192.t1 | AT4G14720 | 33.121 | 157 | 85 | 7 | 40 | 181 | 153 | 304 | 6.75e-11 | 60.1 |
MS.gene54192.t1 | AT4G14720 | 33.121 | 157 | 85 | 7 | 40 | 181 | 153 | 304 | 6.91e-11 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTACAAGAGATTCCTAATT+TGG | 0.066386 | 5.1:+6429613 | MS.gene54192:CDS |
CCATCTATACCTGTTATTTA+TGG | 0.164541 | 5.1:+6430016 | MS.gene54192:CDS |
ATTCATCAATTGACTTATTT+AGG | 0.185988 | 5.1:-6431051 | None:intergenic |
AGCTTCACTTCATCGGTTCT+TGG | 0.292747 | 5.1:+6430160 | MS.gene54192:CDS |
TACCTGGAGTTTCCCAAATT+AGG | 0.318968 | 5.1:-6429626 | None:intergenic |
CCAAATTAGGAATCTCTTGT+AGG | 0.328797 | 5.1:-6429613 | None:intergenic |
CTACAAGAGATTCCTAATTT+GGG | 0.331956 | 5.1:+6429614 | MS.gene54192:CDS |
GGAAAAGTCCATGATGTCTT+TGG | 0.411671 | 5.1:-6429879 | None:intergenic |
ATGTCTTTGGCTTTATCAGC+TGG | 0.417227 | 5.1:-6429866 | None:intergenic |
GCTGGATTACTTGTTTGATA+AGG | 0.423471 | 5.1:-6431022 | None:intergenic |
AGTGAAGCTTTCCTAGTCAT+TGG | 0.425048 | 5.1:-6430146 | None:intergenic |
GACTTATTTAGGAATGCTGC+TGG | 0.431039 | 5.1:-6431040 | None:intergenic |
GTAGTCTTGAAGAGAATTGT+TGG | 0.442893 | 5.1:-6429984 | None:intergenic |
CAAATGACAATCTTCTATGA+TGG | 0.453411 | 5.1:+6429818 | MS.gene54192:CDS |
TGAAGTACTAGTAATTCCTT+TGG | 0.455465 | 5.1:-6429903 | None:intergenic |
TTCATCGGTTCTTGGAGAAA+AGG | 0.463618 | 5.1:+6430168 | MS.gene54192:CDS |
GGAAGCTGTTGAAAATTCAT+AGG | 0.469618 | 5.1:-6429581 | None:intergenic |
CCATAAATAACAGGTATAGA+TGG | 0.477854 | 5.1:-6430016 | None:intergenic |
AGTACTAGTAATTCCTTTGG+TGG | 0.499055 | 5.1:-6429900 | None:intergenic |
ATCCATGTCATGGCTATCCT+TGG | 0.509457 | 5.1:+6431072 | MS.gene54192:CDS |
AGCAAGCATAGTTGTTATTG+TGG | 0.514503 | 5.1:-6429937 | None:intergenic |
TTCCTAATTTGGGAAACTCC+AGG | 0.526778 | 5.1:+6429624 | MS.gene54192:CDS |
CTAGGAAAGCTTCACTTCAT+CGG | 0.529148 | 5.1:+6430153 | MS.gene54192:CDS |
AAATGACAATCTTCTATGAT+GGG | 0.538308 | 5.1:+6429819 | MS.gene54192:CDS |
CTACATTTAGATTTGTGTTG+CGG | 0.547996 | 5.1:-6431106 | None:intergenic |
AATGAAGGCTAATATTAAGA+AGG | 0.556826 | 5.1:+6429778 | MS.gene54192:CDS |
ATCTCTTGTAGGAAGAGATG+AGG | 0.564072 | 5.1:-6429602 | None:intergenic |
GGCTAATATTAAGAAGGAAG+AGG | 0.566182 | 5.1:+6429784 | MS.gene54192:CDS |
TCTTGGAGAAAAGGAAGGAT+AGG | 0.567398 | 5.1:+6430177 | MS.gene54192:CDS |
TGATAAAGCCAAAGACATCA+TGG | 0.585378 | 5.1:+6429871 | MS.gene54192:CDS |
TCGGTTCTTGGAGAAAAGGA+AGG | 0.585705 | 5.1:+6430172 | MS.gene54192:CDS |
GTTTCTGCAGAATTGCTGCA+AGG | 0.606526 | 5.1:+6430996 | MS.gene54192:intron |
ATTCAGATTTACCAATGACT+AGG | 0.608086 | 5.1:+6430135 | MS.gene54192:intron |
TTTCTGCAGAATTGCTGCAA+GGG | 0.611240 | 5.1:+6430997 | MS.gene54192:intron |
CAATTGATGAATCCATGTCA+TGG | 0.612586 | 5.1:+6431062 | MS.gene54192:CDS |
TGCCAAGGATAGCCATGACA+TGG | 0.617530 | 5.1:-6431074 | None:intergenic |
GATTTGTGTTGCGGTGAATG+TGG | 0.627153 | 5.1:-6431097 | None:intergenic |
TTGCGGTGAATGTGGTGCCA+AGG | 0.648709 | 5.1:-6431089 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTTATGGTAATTTTTTT+TGG | + | chr5.1:6430029-6430048 | MS.gene54192:intron | 10.0% |
!! | AAAAAATTACCATAAATAAC+AGG | - | chr5.1:6430028-6430047 | None:intergenic | 15.0% |
!!! | TACACTATTATAATCAATTT+TGG | + | chr5.1:6430790-6430809 | MS.gene54192:intron | 15.0% |
!!! | TGATAGATAAATCAATTTTA+AGG | + | chr5.1:6430435-6430454 | MS.gene54192:intron | 15.0% |
!!! | TTTTTGTTTATAATAGTGAT+TGG | + | chr5.1:6430556-6430575 | MS.gene54192:intron | 15.0% |
!! | GATAACCAATTTACTAAAAT+TGG | - | chr5.1:6430886-6430905 | None:intergenic | 20.0% |
!! | TATTGCTAAAAATATGTTGA+TGG | - | chr5.1:6429685-6429704 | None:intergenic | 20.0% |
!!! | AATTTTAAGGAACCAATTTT+AGG | + | chr5.1:6430448-6430467 | MS.gene54192:intron | 20.0% |
!!! | AGTGTAATTTTGTGTATTTT+AGG | + | chr5.1:6430404-6430423 | MS.gene54192:intron | 20.0% |
!!! | ATTCATCAATTGACTTATTT+AGG | - | chr5.1:6431054-6431073 | None:intergenic | 20.0% |
!!! | TATAGTTTTTTTCTCTACAT+TGG | - | chr5.1:6430670-6430689 | None:intergenic | 20.0% |
! | AAAAAAAAAGAACATGTACC+TGG | - | chr5.1:6429645-6429664 | None:intergenic | 25.0% |
! | AAACATCATACTAGTAGAAA+AGG | - | chr5.1:6430942-6430961 | None:intergenic | 25.0% |
! | AAATGACAATCTTCTATGAT+GGG | + | chr5.1:6429819-6429838 | MS.gene54192:CDS | 25.0% |
! | AACATACTACTTAACAATTG+AGG | - | chr5.1:6430273-6430292 | None:intergenic | 25.0% |
! | AACATCATACTAGTAGAAAA+GGG | - | chr5.1:6430941-6430960 | None:intergenic | 25.0% |
! | AAGTAGTATGTTTGATTCTA+CGG | + | chr5.1:6430281-6430300 | MS.gene54192:intron | 25.0% |
! | AATGAAGGCTAATATTAAGA+AGG | + | chr5.1:6429778-6429797 | MS.gene54192:CDS | 25.0% |
! | GTTACAAAAATTGATTGAAC+TGG | + | chr5.1:6430303-6430322 | MS.gene54192:intron | 25.0% |
! | TCCTCTCAAAACTATATATA+TGG | + | chr5.1:6430911-6430930 | MS.gene54192:intron | 25.0% |
! | TGGATATATTATGTTTGAGA+GGG | + | chr5.1:6430049-6430068 | MS.gene54192:intron | 25.0% |
! | TTATAGTTTCAATCAGTTTC+TGG | + | chr5.1:6430692-6430711 | MS.gene54192:intron | 25.0% |
! | TTGCGTTTATATAATAGTGA+CGG | - | chr5.1:6430482-6430501 | None:intergenic | 25.0% |
! | TTGGATATATTATGTTTGAG+AGG | + | chr5.1:6430048-6430067 | MS.gene54192:intron | 25.0% |
!! | TTTTCTACTAGTATGATGTT+TGG | + | chr5.1:6430941-6430960 | MS.gene54192:intron | 25.0% |
!! | TTTTCTCTACATTGGATTTT+TGG | - | chr5.1:6430662-6430681 | None:intergenic | 25.0% |
!!! | ATATAGTTTTGAGAGGATAA+CGG | - | chr5.1:6430908-6430927 | None:intergenic | 25.0% |
ATATTTGATTGAGAGAGATC+TGG | - | chr5.1:6430211-6430230 | None:intergenic | 30.0% | |
ATCCAAATTCTCTACCTTTA+AGG | - | chr5.1:6430639-6430658 | None:intergenic | 30.0% | |
ATTCAGATTTACCAATGACT+AGG | + | chr5.1:6430135-6430154 | MS.gene54192:intron | 30.0% | |
ATTCATGCTAGTATATAGCA+TGG | + | chr5.1:6429710-6429729 | MS.gene54192:intron | 30.0% | |
CAAATGACAATCTTCTATGA+TGG | + | chr5.1:6429818-6429837 | MS.gene54192:CDS | 30.0% | |
CCATAAATAACAGGTATAGA+TGG | - | chr5.1:6430019-6430038 | None:intergenic | 30.0% | |
CTACAAGAGATTCCTAATTT+GGG | + | chr5.1:6429614-6429633 | MS.gene54192:CDS | 30.0% | |
CTACATTTAGATTTGTGTTG+CGG | - | chr5.1:6431109-6431128 | None:intergenic | 30.0% | |
GACAAACTTATCAGTCAATA+TGG | - | chr5.1:6430973-6430992 | None:intergenic | 30.0% | |
TGCGTTTATATAATAGTGAC+GGG | - | chr5.1:6430481-6430500 | None:intergenic | 30.0% | |
! | CCATCTATACCTGTTATTTA+TGG | + | chr5.1:6430016-6430035 | MS.gene54192:CDS | 30.0% |
! | GTGATTTTGCTAAAAGTGAA+TGG | + | chr5.1:6430336-6430355 | MS.gene54192:intron | 30.0% |
! | TGAAGTACTAGTAATTCCTT+TGG | - | chr5.1:6429906-6429925 | None:intergenic | 30.0% |
! | TTTATATAATAGTGACGGGA+TGG | - | chr5.1:6430477-6430496 | None:intergenic | 30.0% |
!! | AGGAGCCAATTTTAGTAAAT+TGG | + | chr5.1:6430878-6430897 | MS.gene54192:intron | 30.0% |
!! | GTTTTATTACAGTGCAATGA+AGG | + | chr5.1:6429763-6429782 | MS.gene54192:intron | 30.0% |
!!! | GCCATATATATAGTTTTGAG+AGG | - | chr5.1:6430915-6430934 | None:intergenic | 30.0% |
!!! | GTCAATAGACTTCACTTTTT+AGG | + | chr5.1:6430243-6430262 | MS.gene54192:intron | 30.0% |
AGATATAGTGACTTTGGTGA+TGG | + | chr5.1:6430363-6430382 | MS.gene54192:intron | 35.0% | |
AGTACTAGTAATTCCTTTGG+TGG | - | chr5.1:6429903-6429922 | None:intergenic | 35.0% | |
CAATTGATGAATCCATGTCA+TGG | + | chr5.1:6431062-6431081 | MS.gene54192:CDS | 35.0% | |
CCAAATTAGGAATCTCTTGT+AGG | - | chr5.1:6429616-6429635 | None:intergenic | 35.0% | |
CCTACAAGAGATTCCTAATT+TGG | + | chr5.1:6429613-6429632 | MS.gene54192:CDS | 35.0% | |
CTACAAAAATAACACAGAGG+TGG | - | chr5.1:6431134-6431153 | None:intergenic | 35.0% | |
GATACCATGAACAAAAGTGA+AGG | + | chr5.1:6430858-6430877 | MS.gene54192:intron | 35.0% | |
GCTGGATTACTTGTTTGATA+AGG | - | chr5.1:6431025-6431044 | None:intergenic | 35.0% | |
GGAAGCTGTTGAAAATTCAT+AGG | - | chr5.1:6429584-6429603 | None:intergenic | 35.0% | |
GGATTGAGATATAGTGACTT+TGG | + | chr5.1:6430357-6430376 | MS.gene54192:intron | 35.0% | |
GGCTAATATTAAGAAGGAAG+AGG | + | chr5.1:6429784-6429803 | MS.gene54192:CDS | 35.0% | |
TGATAAAGCCAAAGACATCA+TGG | + | chr5.1:6429871-6429890 | MS.gene54192:CDS | 35.0% | |
TTAAGGCGAAAAAGTCATCA+TGG | - | chr5.1:6430622-6430641 | None:intergenic | 35.0% | |
! | AGCAAGCATAGTTGTTATTG+TGG | - | chr5.1:6429940-6429959 | None:intergenic | 35.0% |
! | GATATAGTGACTTTGGTGAT+GGG | + | chr5.1:6430364-6430383 | MS.gene54192:intron | 35.0% |
! | GTAGTCTTGAAGAGAATTGT+TGG | - | chr5.1:6429987-6430006 | None:intergenic | 35.0% |
!!! | TGATGACTTTTTCGCCTTAA+AGG | + | chr5.1:6430622-6430641 | MS.gene54192:intron | 35.0% |
AGTGAAGCTTTCCTAGTCAT+TGG | - | chr5.1:6430149-6430168 | None:intergenic | 40.0% | |
ATCTCTTGTAGGAAGAGATG+AGG | - | chr5.1:6429605-6429624 | None:intergenic | 40.0% | |
CGCCTTAAAGGTAGAGAATT+TGG | + | chr5.1:6430634-6430653 | MS.gene54192:intron | 40.0% | |
CTAGGAAAGCTTCACTTCAT+CGG | + | chr5.1:6430153-6430172 | MS.gene54192:CDS | 40.0% | |
GACTTATTTAGGAATGCTGC+TGG | - | chr5.1:6431043-6431062 | None:intergenic | 40.0% | |
GGAAAAGTCCATGATGTCTT+TGG | - | chr5.1:6429882-6429901 | None:intergenic | 40.0% | |
TACCTGGAGTTTCCCAAATT+AGG | - | chr5.1:6429629-6429648 | None:intergenic | 40.0% | |
TCTTGGAGAAAAGGAAGGAT+AGG | + | chr5.1:6430177-6430196 | MS.gene54192:CDS | 40.0% | |
TTCCTAATTTGGGAAACTCC+AGG | + | chr5.1:6429624-6429643 | MS.gene54192:CDS | 40.0% | |
TTTCTGCAGAATTGCTGCAA+GGG | + | chr5.1:6430997-6431016 | MS.gene54192:intron | 40.0% | |
! | ATCATGGACTTTTCCACCAA+AGG | + | chr5.1:6429887-6429906 | MS.gene54192:CDS | 40.0% |
!! | AGGGTGTTTGATTTGTGTCA+TGG | + | chr5.1:6430068-6430087 | MS.gene54192:intron | 40.0% |
!! | ATGTCTTTGGCTTTATCAGC+TGG | - | chr5.1:6429869-6429888 | None:intergenic | 40.0% |
!! | TTCATCGGTTCTTGGAGAAA+AGG | + | chr5.1:6430168-6430187 | MS.gene54192:CDS | 40.0% |
ACGGGATGGAGTCCTAAAAT+TGG | - | chr5.1:6430463-6430482 | None:intergenic | 45.0% | |
ATCCATGTCATGGCTATCCT+TGG | + | chr5.1:6431072-6431091 | MS.gene54192:CDS | 45.0% | |
GACATGACTCAGTGTATCCT+CGG | - | chr5.1:6430833-6430852 | None:intergenic | 45.0% | |
GATTTGTGTTGCGGTGAATG+TGG | - | chr5.1:6431100-6431119 | None:intergenic | 45.0% | |
GTTTCTGCAGAATTGCTGCA+AGG | + | chr5.1:6430996-6431015 | MS.gene54192:intron | 45.0% | |
TCGGTTCTTGGAGAAAAGGA+AGG | + | chr5.1:6430172-6430191 | MS.gene54192:CDS | 45.0% | |
TTGATTGAGAGAGATCTGGC+AGG | - | chr5.1:6430207-6430226 | None:intergenic | 45.0% | |
!! | AGCTTCACTTCATCGGTTCT+TGG | + | chr5.1:6430160-6430179 | MS.gene54192:CDS | 45.0% |
!! | GGCTCCTTCACTTTTGTTCA+TGG | - | chr5.1:6430865-6430884 | None:intergenic | 45.0% |
TGCCAAGGATAGCCATGACA+TGG | - | chr5.1:6431077-6431096 | None:intergenic | 50.0% | |
! | TGTATCCTCGGCTCGACTTT+AGG | - | chr5.1:6430821-6430840 | None:intergenic | 50.0% |
CTCATCCTAAAGTCGAGCCG+AGG | + | chr5.1:6430813-6430832 | MS.gene54192:intron | 55.0% | |
! | TTGCGGTGAATGTGGTGCCA+AGG | - | chr5.1:6431092-6431111 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 6429560 | 6431153 | 6429560 | ID=MS.gene54192 |
chr5.1 | mRNA | 6429560 | 6431153 | 6429560 | ID=MS.gene54192.t1;Parent=MS.gene54192 |
chr5.1 | exon | 6429560 | 6429645 | 6429560 | ID=MS.gene54192.t1.exon1;Parent=MS.gene54192.t1 |
chr5.1 | CDS | 6429560 | 6429645 | 6429560 | ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1 |
chr5.1 | exon | 6429775 | 6430037 | 6429775 | ID=MS.gene54192.t1.exon2;Parent=MS.gene54192.t1 |
chr5.1 | CDS | 6429775 | 6430037 | 6429775 | ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1 |
chr5.1 | exon | 6430141 | 6430198 | 6430141 | ID=MS.gene54192.t1.exon3;Parent=MS.gene54192.t1 |
chr5.1 | CDS | 6430141 | 6430198 | 6430141 | ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1 |
chr5.1 | exon | 6431006 | 6431153 | 6431006 | ID=MS.gene54192.t1.exon4;Parent=MS.gene54192.t1 |
chr5.1 | CDS | 6431006 | 6431153 | 6431006 | ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1 |
Gene Sequence |
Protein sequence |