AlfalfaGEDB | MS.gene54192

M. sativa cultivar XinJiangDaYe / MS.gene54192

KEGG: K13464
GO: -
PFAM: PF06200.17 PF09425.13

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54192.t1	XP_024640082.1	86.4	184	14	3	1	184	1	173	5.60E-78	300.4

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54192.t1	Q84R94	43.6	163	77	3	17	167	54	213	9.1e-21	101.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54192.t1	G7JYL9	86.4	184	14	3	1	184	1	173	5.2e-78	300.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene54192.t1	TF	Tify

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene060503	MS.gene54192	0.820841	5.54E-53	-1.69E-46

Showing 1 to 1 of 1 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54192.t1	MTR_5g013530	86.413	184	14	3	1	184	1	173	6.28e-111	313
MS.gene54192.t1	MTR_5g013530	85.897	156	11	3	29	184	7	151	9.88e-90	259
MS.gene54192.t1	MTR_5g013520	83.553	152	18	3	30	181	1	145	9.39e-87	251
MS.gene54192.t1	MTR_5g013515	71.034	145	27	5	31	168	1	137	6.14e-64	193
MS.gene54192.t1	MTR_2g042900	47.273	165	43	7	25	163	99	245	8.82e-35	123
MS.gene54192.t1	MTR_2g042900	37.500	168	39	7	25	136	99	256	1.29e-19	83.6
MS.gene54192.t1	MTR_2g044910	30.172	116	72	1	40	146	11	126	2.42e-13	65.1
MS.gene54192.t1	MTR_2g044910	30.172	116	72	1	40	146	54	169	5.45e-13	64.7
MS.gene54192.t1	MTR_8g021380	31.298	131	84	3	19	144	79	208	6.72e-13	65.1

Showing 1 to 9 of 9 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene54192.t1	AT1G19180	43.284	134	70	4	37	166	53	184	1.33e-27	102
MS.gene54192.t1	AT1G19180	43.284	134	70	4	37	166	119	250	9.75e-27	102
MS.gene54192.t1	AT1G19180	43.284	134	70	4	37	166	119	250	9.75e-27	102
MS.gene54192.t1	AT1G74950	39.130	138	72	3	37	164	112	247	1.66e-22	91.3
MS.gene54192.t1	AT1G74950	40.000	110	56	2	37	136	112	221	3.38e-17	76.6
MS.gene54192.t1	AT1G17380	35.714	126	73	2	33	150	58	183	9.19e-16	73.2
MS.gene54192.t1	AT1G72450	36.066	122	66	3	39	152	101	218	1.52e-15	72.8
MS.gene54192.t1	AT1G17380	35.714	126	73	2	33	150	87	212	2.75e-15	72.0
MS.gene54192.t1	AT5G20900	37.719	114	58	3	44	147	57	167	7.38e-15	69.7
MS.gene54192.t1	AT1G70700	36.538	104	62	2	44	144	119	221	2.01e-12	63.9

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 38 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGACAATCTTCTATGAT+GGG	0.538308	5.1:+6429819	MS.gene54192:CDS
AATGAAGGCTAATATTAAGA+AGG	0.556826	5.1:+6429778	MS.gene54192:CDS
AGCAAGCATAGTTGTTATTG+TGG	0.514503	5.1:-6429937	None:intergenic
AGCTTCACTTCATCGGTTCT+TGG	0.292747	5.1:+6430160	MS.gene54192:CDS
AGTACTAGTAATTCCTTTGG+TGG	0.499055	5.1:-6429900	None:intergenic
AGTGAAGCTTTCCTAGTCAT+TGG	0.425048	5.1:-6430146	None:intergenic
ATCCATGTCATGGCTATCCT+TGG	0.509457	5.1:+6431072	MS.gene54192:CDS
ATCTCTTGTAGGAAGAGATG+AGG	0.564072	5.1:-6429602	None:intergenic
ATGTCTTTGGCTTTATCAGC+TGG	0.417227	5.1:-6429866	None:intergenic
ATTCAGATTTACCAATGACT+AGG	0.608086	5.1:+6430135	MS.gene54192:intron

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTGATTGAGAGAGATC+TGG	-	chr5.1:6430211-6430230	None:intergenic	30.0%
ATCCAAATTCTCTACCTTTA+AGG	-	chr5.1:6430639-6430658	None:intergenic	30.0%
ATTCAGATTTACCAATGACT+AGG	+	chr5.1:6430135-6430154	MS.gene54192:intron	30.0%
ATTCATGCTAGTATATAGCA+TGG	+	chr5.1:6429710-6429729	MS.gene54192:intron	30.0%
CAAATGACAATCTTCTATGA+TGG	+	chr5.1:6429818-6429837	MS.gene54192:CDS	30.0%
CCATAAATAACAGGTATAGA+TGG	-	chr5.1:6430019-6430038	None:intergenic	30.0%
CTACAAGAGATTCCTAATTT+GGG	+	chr5.1:6429614-6429633	MS.gene54192:CDS	30.0%
CTACATTTAGATTTGTGTTG+CGG	-	chr5.1:6431109-6431128	None:intergenic	30.0%
GACAAACTTATCAGTCAATA+TGG	-	chr5.1:6430973-6430992	None:intergenic	30.0%
TGCGTTTATATAATAGTGAC+GGG	-	chr5.1:6430481-6430500	None:intergenic	30.0%

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	6429560	6431153	6429560	ID=MS.gene54192
chr5.1	mRNA	6429560	6431153	6429560	ID=MS.gene54192.t1;Parent=MS.gene54192
chr5.1	exon	6429560	6429645	6429560	ID=MS.gene54192.t1.exon1;Parent=MS.gene54192.t1
chr5.1	CDS	6429560	6429645	6429560	ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1
chr5.1	exon	6429775	6430037	6429775	ID=MS.gene54192.t1.exon2;Parent=MS.gene54192.t1
chr5.1	CDS	6429775	6430037	6429775	ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1
chr5.1	exon	6430141	6430198	6430141	ID=MS.gene54192.t1.exon3;Parent=MS.gene54192.t1
chr5.1	CDS	6430141	6430198	6430141	ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1
chr5.1	exon	6431006	6431153	6431006	ID=MS.gene54192.t1.exon4;Parent=MS.gene54192.t1
chr5.1	CDS	6431006	6431153	6431006	ID=cds.MS.gene54192.t1;Parent=MS.gene54192.t1

Gene Sequence

>MS.gene54192

ATGAAGCATCACAACATAACACCTATGAATTTTCAACAGCTTCCTCATCTCTTCCTACAAGAGATTCCTAATTTGGGAAACTCCAGGTACATGTTCTTTTTTTTTACTTTAACTTGTTAAGTCCATCAACATATTTTTAGCAATATTCAAATTCATGCTAGTATATAGCATGGTCAATTTGCATTAAATTAATTGTTAATGTTGTTTTATTACAGTGCAATGAAGGCTAATATTAAGAAGGAAGAGGCTAGATGTGCACAAATGACAATCTTCTATGATGGGAAAGTAATTGTGTTTGATGATGTTCCAGCTGATAAAGCCAAAGACATCATGGACTTTTCCACCAAAGGAATTACTAGTACTTCACAAGCACAAAACCACAATAACAACTATGCTTGCTCTTCATTTCTTGCTAGAAATTCTGCCAACAATTCTCTTCAAGACTACTATCAAGTACCATCTATACCTGTTATTTATGGTAATTTTTTTTGGATATATTATGTTTGAGAGGGTGTTTGATTTGTGTCATGGTTTTGTTTTTTGTGTGTTTTTAACTCATGAAATTATTTTTATGTATTCAGATTTACCAATGACTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGGAAGGATAGGTAAGCCTGCCAGATCTCTCTCAATCAAATATTGTTTGATCTTTGTCAATAGACTTCACTTTTTAGGAAAACCTCAATTGTTAAGTAGTATGTTTGATTCTACGGTTACAAAAATTGATTGAACTGGTTATTTAAAAGTGATTTTGCTAAAAGTGAATGGATTGAGATATAGTGACTTTGGTGATGGGAAAGTAATTATTACTATAGTGTAATTTTGTGTATTTTAGGAAAGAAAATGATAGATAAATCAATTTTAAGGAACCAATTTTAGGACTCCATCCCGTCACTATTATATAAACGCAAAAAATCACTTTTAAATTTATTCAATAATGTATTGAATGAATCTTAAAAGTTGTTTTTTTGTTTATAATAGTGATTGGATGAAGTATATATATATAAAAGTGAAAGATAAACACAAAGCCATGATGACTTTTTCGCCTTAAAGGTAGAGAATTTGGATCCAAAAATCCAATGTAGAGAAAAAAACTATAAATTATAGTTTCAATCAGTTTCTGGAAGCAAAATCAATTTCACTTCAAAAACATTCAAACATTTGTTTTTGAAAGAAAGAAAACATGTCAAAATCAATTCTACACTATTATAATCAATTTTGGCTCATCCTAAAGTCGAGCCGAGGATACACTGAGTCATGTCAAATTGATACCATGAACAAAAGTGAAGGAGCCAATTTTAGTAAATTGGTTATCCGTTATCCTCTCAAAACTATATATATGGCTGACCCTTTTCTACTAGTATGATGTTTGGAATTATCCATATTGACTGATAAGTTTGTCTATGTTTCTGCAGAATTGCTGCAAGGGCACCTTATCAAACAAGTAATCCAGCAGCATTCCTAAATAAGTCAATTGATGAATCCATGTCATGGCTATCCTTGGCACCACATTCACCGCAACACAAATCTAAATGTAGCTCCACCTCTGTGTTATTTTTGTAG

Protein sequence

>MS.gene54192.t1

MKHHNITPMNFQQLPHLFLQEIPNLGNSSAMKANIKKEEARCAQMTIFYDGKVIVFDDVPADKAKDIMDFSTKGITSTSQAQNHNNNYACSSFLARNSANNSLQDYYQVPSIPVIYDLPMTRKASLHRFLEKRKDRIAARAPYQTSNPAAFLNKSIDESMSWLSLAPHSPQHKSKCSSTSVLFL