Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54216.t1 | XP_003611427.2 | 99.2 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 2.00E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54216.t1 | Q9ZVJ5 | 70.9 | 234 | 68 | 0 | 6 | 239 | 8 | 241 | 6.1e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54216.t1 | G7JYQ1 | 99.2 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 1.5e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061224 | MS.gene54216 | 0.804316 | 2.29E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54216.t1 | MTR_5g013910 | 99.180 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 1.21e-180 | 495 |
| MS.gene54216.t1 | MTR_4g091060 | 27.083 | 192 | 129 | 4 | 20 | 207 | 8 | 192 | 5.43e-12 | 64.3 |
| MS.gene54216.t1 | MTR_4g091060 | 27.083 | 192 | 129 | 4 | 20 | 207 | 8 | 192 | 7.53e-12 | 64.7 |
| MS.gene54216.t1 | MTR_7g112140 | 26.316 | 228 | 153 | 6 | 5 | 225 | 60 | 279 | 1.58e-11 | 64.3 |
| MS.gene54216.t1 | MTR_7g112140 | 26.316 | 228 | 153 | 6 | 5 | 225 | 60 | 279 | 1.68e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54216.t1 | AT2G38740 | 70.940 | 234 | 68 | 0 | 6 | 239 | 8 | 241 | 4.79e-125 | 355 |
| MS.gene54216.t1 | AT1G56500 | 27.103 | 214 | 141 | 5 | 20 | 225 | 74 | 280 | 1.70e-13 | 70.1 |
| MS.gene54216.t1 | AT1G56500 | 27.103 | 214 | 141 | 5 | 20 | 225 | 74 | 280 | 1.90e-13 | 70.1 |
| MS.gene54216.t1 | AT4G21470 | 27.861 | 201 | 130 | 6 | 12 | 207 | 5 | 195 | 6.63e-12 | 64.7 |
Find 66 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAATGCTGCCCACAATTT+TGG | 0.109444 | 5.1:-6822373 | None:intergenic |
| TTCTTTCATGCTGTTATTAT+TGG | 0.134310 | 5.1:+6822055 | MS.gene54216:CDS |
| TCGTTGCAGGATTCTGTTTC+AGG | 0.193983 | 5.1:+6822238 | MS.gene54216:intron |
| CAGTAAATCCTCTGGGTTTC+GGG | 0.200098 | 5.1:-6822308 | None:intergenic |
| AGACCTTTCAAGTAGGGTTC+TGG | 0.300746 | 5.1:-6822106 | None:intergenic |
| TGCTTCAATTGGAGCAAGTT+TGG | 0.305673 | 5.1:-6821434 | None:intergenic |
| GAGCAACTGAAGCCGTTAAA+TGG | 0.315774 | 5.1:+6821920 | MS.gene54216:CDS |
| AAAGCCTGCCTTTCTGATAA+AGG | 0.327178 | 5.1:+6822339 | MS.gene54216:CDS |
| TCAGTAAATCCTCTGGGTTT+CGG | 0.346064 | 5.1:-6822309 | None:intergenic |
| GCTGCTGGGATGCCTGTTAT+TGG | 0.354239 | 5.1:+6822277 | MS.gene54216:CDS |
| TTTAAAGTTTGTAGAAGATA+AGG | 0.369133 | 5.1:+6821785 | MS.gene54216:CDS |
| TCCAAAATTGTGGGCAGCAT+TGG | 0.379963 | 5.1:+6822372 | MS.gene54216:CDS |
| GAGAGCATGAGTTCTGCATT+TGG | 0.384088 | 5.1:-6822013 | None:intergenic |
| GCTCCCATCAGTAAATCCTC+TGG | 0.391301 | 5.1:-6822316 | None:intergenic |
| ATGAGTTCTGCATTTGGTCT+TGG | 0.391707 | 5.1:-6822007 | None:intergenic |
| TGCATTTGGTCTTGGAGCAT+TGG | 0.395388 | 5.1:-6821999 | None:intergenic |
| TGAAGCTCTCAAAGCATCTA+AGG | 0.401317 | 5.1:+6822129 | MS.gene54216:CDS |
| CGGGTAGATATACCAATAAC+AGG | 0.404855 | 5.1:-6822289 | None:intergenic |
| TTTCACGAAAAGCATAATAG+TGG | 0.419783 | 5.1:-6821501 | None:intergenic |
| TCAAACAGCACTGCTTCAAT+TGG | 0.423109 | 5.1:-6821445 | None:intergenic |
| TTCAAGTAGGGTTCTGGATG+CGG | 0.425793 | 5.1:-6822100 | None:intergenic |
| GCCTTGATAAAGTGAGGAAA+TGG | 0.427010 | 5.1:+6821942 | MS.gene54216:CDS |
| ATCAAAGCAGGAGTCGCTGC+TGG | 0.427325 | 5.1:+6822262 | MS.gene54216:CDS |
| ACTTTATCAAGGCCATTTAA+CGG | 0.428311 | 5.1:-6821932 | None:intergenic |
| CGAAAAGCATAATAGTGGAT+TGG | 0.428774 | 5.1:-6821496 | None:intergenic |
| GAAAAGCATAATAGTGGATT+GGG | 0.432417 | 5.1:-6821495 | None:intergenic |
| GGATCACACATTTATATTTG+AGG | 0.435509 | 5.1:+6822150 | MS.gene54216:CDS |
| GGTTGTCAGATTGGTTTCAA+TGG | 0.438195 | 5.1:+6821663 | MS.gene54216:intron |
| ATTGCCTTGGATCTCTTCCC+TGG | 0.441811 | 5.1:+6821747 | MS.gene54216:CDS |
| GGATCTCTTCCCTGGTGATC+GGG | 0.441858 | 5.1:+6821755 | MS.gene54216:CDS |
| TCCATTTCCTCACTTTATCA+AGG | 0.442894 | 5.1:-6821943 | None:intergenic |
| TGGATCTCTTCCCTGGTGAT+CGG | 0.444007 | 5.1:+6821754 | MS.gene54216:CDS |
| TTACCTTTCGACGGAATTCT+CGG | 0.446019 | 5.1:-6820834 | None:intergenic |
| CTCCCATCAGTAAATCCTCT+GGG | 0.451240 | 5.1:-6822315 | None:intergenic |
| GAACTCATGCTCTCAAAACT+TGG | 0.451846 | 5.1:+6822022 | MS.gene54216:CDS |
| AAACCTCGTTCCCGATCACC+AGG | 0.467601 | 5.1:-6821765 | None:intergenic |
| AAGATAAGGAAGCCATGTTT+CGG | 0.470711 | 5.1:+6821799 | MS.gene54216:CDS |
| ATCATTGTGCTTGCCAGCAA+CGG | 0.511684 | 5.1:-6821721 | None:intergenic |
| ATCGTAATCCTTTATCAGAA+AGG | 0.511772 | 5.1:-6822347 | None:intergenic |
| GCTTCAAGACCTTTCAAGTA+GGG | 0.512510 | 5.1:-6822112 | None:intergenic |
| TAATCCTTTATCAGAAAGGC+AGG | 0.518031 | 5.1:-6822343 | None:intergenic |
| TTCGACGGAATTCTCGGAAG+TGG | 0.518505 | 5.1:-6820828 | None:intergenic |
| TTGGAAGAACTTGACAAGTC+CGG | 0.524640 | 5.1:+6822391 | MS.gene54216:CDS |
| GCACAATGATGACATTGCCT+TGG | 0.533662 | 5.1:+6821734 | MS.gene54216:CDS |
| GTAGGGTTCTGGATGCGGCT+TGG | 0.540889 | 5.1:-6822095 | None:intergenic |
| TCTGTTTCAGGAATCAAAGC+AGG | 0.557269 | 5.1:+6822250 | MS.gene54216:CDS |
| ATTACGATGATCCAAAATTG+TGG | 0.558212 | 5.1:+6822362 | MS.gene54216:CDS |
| CATCCAGAACCCTACTTGAA+AGG | 0.559499 | 5.1:+6822103 | MS.gene54216:CDS |
| TGTCAGATTGGTTTCAATGG+AGG | 0.559859 | 5.1:+6821666 | MS.gene54216:intron |
| AACCCAGAGGATTTACTGAT+GGG | 0.570236 | 5.1:+6822313 | MS.gene54216:CDS |
| TTCCCTGGTGATCGGGAACG+AGG | 0.572268 | 5.1:+6821762 | MS.gene54216:CDS |
| TCAAAGCAGGAGTCGCTGCT+GGG | 0.574198 | 5.1:+6822263 | MS.gene54216:CDS |
| AAACCCAGAGGATTTACTGA+TGG | 0.582964 | 5.1:+6822312 | MS.gene54216:CDS |
| AGCTTCAAGACCTTTCAAGT+AGG | 0.587847 | 5.1:-6822113 | None:intergenic |
| AGGAAATGGATTGAAGATCG+TGG | 0.589739 | 5.1:+6821956 | MS.gene54216:CDS |
| TAGGGTTTACCTCCGAAACA+TGG | 0.604667 | 5.1:-6821811 | None:intergenic |
| AAGGAAGCGTTACCTTTCGA+CGG | 0.608896 | 5.1:-6820843 | None:intergenic |
| TTACGATGATCCAAAATTGT+GGG | 0.611404 | 5.1:+6822363 | MS.gene54216:CDS |
| TGGAGGTAATCCTATAACAG+AGG | 0.615734 | 5.1:+6821683 | MS.gene54216:CDS |
| TAAATGGCCTTGATAAAGTG+AGG | 0.625840 | 5.1:+6821936 | MS.gene54216:CDS |
| CTTCCGAGAATTCCGTCGAA+AGG | 0.629071 | 5.1:+6820831 | MS.gene54216:CDS |
| ATAAGGAAGCCATGTTTCGG+AGG | 0.643823 | 5.1:+6821802 | MS.gene54216:CDS |
| ATCACCAGGGAAGAGATCCA+AGG | 0.667902 | 5.1:-6821751 | None:intergenic |
| GCAGTGCTGTTTGATATAGA+CGG | 0.671189 | 5.1:+6821454 | MS.gene54216:CDS |
| AACCTCGTTCCCGATCACCA+GGG | 0.706366 | 5.1:-6821764 | None:intergenic |
| TATATCTACCCGAAACCCAG+AGG | 0.748163 | 5.1:+6822300 | MS.gene54216:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATACTATAATATCTATT+TGG | - | chr5.1:6821556-6821575 | None:intergenic | 10.0% |
| !! | ATCTTATTATCATGAAAAAT+AGG | - | chr5.1:6820954-6820973 | None:intergenic | 15.0% |
| !! | TATTAGAAATTAACAAATGT+TGG | + | chr5.1:6821639-6821658 | MS.gene54216:intron | 15.0% |
| !!! | TCATATTTTGTATAAAAGAA+TGG | - | chr5.1:6821194-6821213 | None:intergenic | 15.0% |
| !!! | TTAACACTAAATATATTTTG+AGG | - | chr5.1:6821077-6821096 | None:intergenic | 15.0% |
| !! | AAATGAAATCAAGAATATGA+AGG | - | chr5.1:6820865-6820884 | None:intergenic | 20.0% |
| !! | ATAAAAAATTCCTCTGTTAT+AGG | - | chr5.1:6821696-6821715 | None:intergenic | 20.0% |
| !! | GAATAAGAACAAATTATCTA+AGG | - | chr5.1:6822196-6822215 | None:intergenic | 20.0% |
| !!! | CACAAAGATTTTAAGTTTAT+CGG | - | chr5.1:6821301-6821320 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTTGTAGAAGATA+AGG | + | chr5.1:6821785-6821804 | MS.gene54216:CDS | 20.0% |
| ! | AATCTTCAAATTTAGCACAA+TGG | - | chr5.1:6821856-6821875 | None:intergenic | 25.0% |
| ! | ATAAAAGAATGGAGATAACA+AGG | - | chr5.1:6821183-6821202 | None:intergenic | 25.0% |
| ! | ATCTTCAAATTTAGCACAAT+GGG | - | chr5.1:6821855-6821874 | None:intergenic | 25.0% |
| ! | TAGAAATTAACAAATGTTGG+TGG | + | chr5.1:6821642-6821661 | MS.gene54216:intron | 25.0% |
| ! | TATAAATTGGCATATGACTA+AGG | + | chr5.1:6821602-6821621 | MS.gene54216:intron | 25.0% |
| ! | TATCCATACTTTATTCCAAA+GGG | + | chr5.1:6821245-6821264 | MS.gene54216:intron | 25.0% |
| ! | TTCTTTCATGCTGTTATTAT+TGG | + | chr5.1:6822055-6822074 | MS.gene54216:CDS | 25.0% |
| ACTTTATCAAGGCCATTTAA+CGG | - | chr5.1:6821935-6821954 | None:intergenic | 30.0% | |
| ATAAAGTATGGATAGATTCG+AGG | - | chr5.1:6821239-6821258 | None:intergenic | 30.0% | |
| ATCGTAATCCTTTATCAGAA+AGG | - | chr5.1:6822350-6822369 | None:intergenic | 30.0% | |
| ATTACGATGATCCAAAATTG+TGG | + | chr5.1:6822362-6822381 | MS.gene54216:CDS | 30.0% | |
| CTATCCATACTTTATTCCAA+AGG | + | chr5.1:6821244-6821263 | MS.gene54216:intron | 30.0% | |
| CTTAAAATCTTTGTGCTAAC+CGG | + | chr5.1:6821306-6821325 | MS.gene54216:intron | 30.0% | |
| GAAACATATTTCCTTGATGA+TGG | + | chr5.1:6821878-6821897 | MS.gene54216:intron | 30.0% | |
| GGATCACACATTTATATTTG+AGG | + | chr5.1:6822150-6822169 | MS.gene54216:CDS | 30.0% | |
| TATGAACTTCAAAGCAAGTA+AGG | + | chr5.1:6821209-6821228 | MS.gene54216:intron | 30.0% | |
| TCTTCAAATTTAGCACAATG+GGG | - | chr5.1:6821854-6821873 | None:intergenic | 30.0% | |
| TGAATGAACTCTAGACTATA+TGG | - | chr5.1:6821158-6821177 | None:intergenic | 30.0% | |
| TGACACAACATGAAAGTAAT+GGG | - | chr5.1:6821396-6821415 | None:intergenic | 30.0% | |
| TTACGATGATCCAAAATTGT+GGG | + | chr5.1:6822363-6822382 | MS.gene54216:CDS | 30.0% | |
| ! | TTTCACGAAAAGCATAATAG+TGG | - | chr5.1:6821504-6821523 | None:intergenic | 30.0% |
| !! | GAAAAGCATAATAGTGGATT+GGG | - | chr5.1:6821498-6821517 | None:intergenic | 30.0% |
| AACTTCAAAGCAAGTAAGGT+AGG | + | chr5.1:6821213-6821232 | MS.gene54216:intron | 35.0% | |
| AAGATAAGGAAGCCATGTTT+CGG | + | chr5.1:6821799-6821818 | MS.gene54216:CDS | 35.0% | |
| AATCAACTCATGTCATGAAC+CGG | - | chr5.1:6821328-6821347 | None:intergenic | 35.0% | |
| AATTTAGCACAATGGGGATT+CGG | - | chr5.1:6821848-6821867 | None:intergenic | 35.0% | |
| ACTATATGGCCATAAACCAA+CGG | - | chr5.1:6821144-6821163 | None:intergenic | 35.0% | |
| ATCTAGATAGTCCATCATCA+AGG | - | chr5.1:6821892-6821911 | None:intergenic | 35.0% | |
| ATTGAAGATGCACCCAATTT+AGG | + | chr5.1:6821012-6821031 | MS.gene54216:intron | 35.0% | |
| CTGACACAACATGAAAGTAA+TGG | - | chr5.1:6821397-6821416 | None:intergenic | 35.0% | |
| GATTTCAAGAAAGTTCCCTT+TGG | - | chr5.1:6821263-6821282 | None:intergenic | 35.0% | |
| TAATCCTTTATCAGAAAGGC+AGG | - | chr5.1:6822346-6822365 | None:intergenic | 35.0% | |
| TCCATTTCCTCACTTTATCA+AGG | - | chr5.1:6821946-6821965 | None:intergenic | 35.0% | |
| TGCTATAGATATATTGCCGT+TGG | + | chr5.1:6821125-6821144 | MS.gene54216:intron | 35.0% | |
| TGTTCTTATTCTGCTTCTGA+CGG | + | chr5.1:6822205-6822224 | MS.gene54216:intron | 35.0% | |
| TTGAAGATGCACCCAATTTA+GGG | + | chr5.1:6821013-6821032 | MS.gene54216:intron | 35.0% | |
| ! | TAAATGGCCTTGATAAAGTG+AGG | + | chr5.1:6821936-6821955 | MS.gene54216:CDS | 35.0% |
| ! | TTAGCAGAAGAAAGTGTGAA+TGG | - | chr5.1:6821051-6821070 | None:intergenic | 35.0% |
| ! | TTTTCGTGAAATGCTTCAAG+AGG | + | chr5.1:6821513-6821532 | MS.gene54216:CDS | 35.0% |
| !! | CGAAAAGCATAATAGTGGAT+TGG | - | chr5.1:6821499-6821518 | None:intergenic | 35.0% |
| !! | GATATATTGCCGTTGGTTTA+TGG | + | chr5.1:6821132-6821151 | MS.gene54216:intron | 35.0% |
| !! | GTTCCCTTTGGAATAAAGTA+TGG | - | chr5.1:6821251-6821270 | None:intergenic | 35.0% |
| !! | TTTTGATCTTTAAGAGTGCG+AGG | - | chr5.1:6820993-6821012 | None:intergenic | 35.0% |
| AAACCCAGAGGATTTACTGA+TGG | + | chr5.1:6822312-6822331 | MS.gene54216:CDS | 40.0% | |
| AAAGCCTGCCTTTCTGATAA+AGG | + | chr5.1:6822339-6822358 | MS.gene54216:CDS | 40.0% | |
| AACCCAGAGGATTTACTGAT+GGG | + | chr5.1:6822313-6822332 | MS.gene54216:CDS | 40.0% | |
| ATGAGTTCTGCATTTGGTCT+TGG | - | chr5.1:6822010-6822029 | None:intergenic | 40.0% | |
| ATTTAGCACAATGGGGATTC+GGG | - | chr5.1:6821847-6821866 | None:intergenic | 40.0% | |
| CGGGTAGATATACCAATAAC+AGG | - | chr5.1:6822292-6822311 | None:intergenic | 40.0% | |
| GAACTCATGCTCTCAAAACT+TGG | + | chr5.1:6822022-6822041 | MS.gene54216:CDS | 40.0% | |
| GCCTTGATAAAGTGAGGAAA+TGG | + | chr5.1:6821942-6821961 | MS.gene54216:CDS | 40.0% | |
| TCAAACAGCACTGCTTCAAT+TGG | - | chr5.1:6821448-6821467 | None:intergenic | 40.0% | |
| TCACTGCAGATCCCTAAATT+GGG | - | chr5.1:6821027-6821046 | None:intergenic | 40.0% | |
| TCAGTAAATCCTCTGGGTTT+CGG | - | chr5.1:6822312-6822331 | None:intergenic | 40.0% | |
| TCTGTTTCAGGAATCAAAGC+AGG | + | chr5.1:6822250-6822269 | MS.gene54216:CDS | 40.0% | |
| TGCTTCAATTGGAGCAAGTT+TGG | - | chr5.1:6821437-6821456 | None:intergenic | 40.0% | |
| TGGAGGTAATCCTATAACAG+AGG | + | chr5.1:6821683-6821702 | MS.gene54216:CDS | 40.0% | |
| TTACCTTTCGACGGAATTCT+CGG | - | chr5.1:6820837-6820856 | None:intergenic | 40.0% | |
| TTCACTGCAGATCCCTAAAT+TGG | - | chr5.1:6821028-6821047 | None:intergenic | 40.0% | |
| TTGGAAGAACTTGACAAGTC+CGG | + | chr5.1:6822391-6822410 | MS.gene54216:CDS | 40.0% | |
| ! | AGCTTCAAGACCTTTCAAGT+AGG | - | chr5.1:6822116-6822135 | None:intergenic | 40.0% |
| ! | GCTTCAAGACCTTTCAAGTA+GGG | - | chr5.1:6822115-6822134 | None:intergenic | 40.0% |
| ! | TGAAGCTCTCAAAGCATCTA+AGG | + | chr5.1:6822129-6822148 | MS.gene54216:CDS | 40.0% |
| !! | AATGTTGGTGGTTGTCAGAT+TGG | + | chr5.1:6821654-6821673 | MS.gene54216:intron | 40.0% |
| !! | AGGAAATGGATTGAAGATCG+TGG | + | chr5.1:6821956-6821975 | MS.gene54216:CDS | 40.0% |
| !! | GCAGTGCTGTTTGATATAGA+CGG | + | chr5.1:6821454-6821473 | MS.gene54216:CDS | 40.0% |
| !! | GGTTGTCAGATTGGTTTCAA+TGG | + | chr5.1:6821663-6821682 | MS.gene54216:intron | 40.0% |
| !! | TGTCAGATTGGTTTCAATGG+AGG | + | chr5.1:6821666-6821685 | MS.gene54216:intron | 40.0% |
| !!! | TTTTTTATTGCGACCGTTGC+TGG | + | chr5.1:6821708-6821727 | MS.gene54216:CDS | 40.0% |
| ATAAGGAAGCCATGTTTCGG+AGG | + | chr5.1:6821802-6821821 | MS.gene54216:CDS | 45.0% | |
| ATCATTGTGCTTGCCAGCAA+CGG | - | chr5.1:6821724-6821743 | None:intergenic | 45.0% | |
| CAGTAAATCCTCTGGGTTTC+GGG | - | chr5.1:6822311-6822330 | None:intergenic | 45.0% | |
| CATCCAGAACCCTACTTGAA+AGG | + | chr5.1:6822103-6822122 | MS.gene54216:CDS | 45.0% | |
| CTCCCATCAGTAAATCCTCT+GGG | - | chr5.1:6822318-6822337 | None:intergenic | 45.0% | |
| GAATCCTGCAACGACAAAAC+AGG | - | chr5.1:6822232-6822251 | None:intergenic | 45.0% | |
| GAGCAACTGAAGCCGTTAAA+TGG | + | chr5.1:6821920-6821939 | MS.gene54216:CDS | 45.0% | |
| GCACAATGATGACATTGCCT+TGG | + | chr5.1:6821734-6821753 | MS.gene54216:CDS | 45.0% | |
| TAGGGTTTACCTCCGAAACA+TGG | - | chr5.1:6821814-6821833 | None:intergenic | 45.0% | |
| TATATCTACCCGAAACCCAG+AGG | + | chr5.1:6822300-6822319 | MS.gene54216:CDS | 45.0% | |
| TCCAAAATTGTGGGCAGCAT+TGG | + | chr5.1:6822372-6822391 | MS.gene54216:CDS | 45.0% | |
| TCGTTGCAGGATTCTGTTTC+AGG | + | chr5.1:6822238-6822257 | MS.gene54216:intron | 45.0% | |
| TTTAGCACAATGGGGATTCG+GGG | - | chr5.1:6821846-6821865 | None:intergenic | 45.0% | |
| ! | AGACCTTTCAAGTAGGGTTC+TGG | - | chr5.1:6822109-6822128 | None:intergenic | 45.0% |
| ! | GAGAGCATGAGTTCTGCATT+TGG | - | chr5.1:6822016-6822035 | None:intergenic | 45.0% |
| ! | TCCAATGCTGCCCACAATTT+TGG | - | chr5.1:6822376-6822395 | None:intergenic | 45.0% |
| !! | AAGGAAGCGTTACCTTTCGA+CGG | - | chr5.1:6820846-6820865 | None:intergenic | 45.0% |
| !! | TGCATTTGGTCTTGGAGCAT+TGG | - | chr5.1:6822002-6822021 | None:intergenic | 45.0% |
| !! | TTCAAGTAGGGTTCTGGATG+CGG | - | chr5.1:6822103-6822122 | None:intergenic | 45.0% |
| !! | TTTATTGAATTATTATAAAT+TGG | + | chr5.1:6821589-6821608 | MS.gene54216:intron | 5.0% |
| ATCACCAGGGAAGAGATCCA+AGG | - | chr5.1:6821754-6821773 | None:intergenic | 50.0% | |
| ATTGCCTTGGATCTCTTCCC+TGG | + | chr5.1:6821747-6821766 | MS.gene54216:CDS | 50.0% | |
| CTTCCGAGAATTCCGTCGAA+AGG | + | chr5.1:6820831-6820850 | MS.gene54216:CDS | 50.0% | |
| GCTCCCATCAGTAAATCCTC+TGG | - | chr5.1:6822319-6822338 | None:intergenic | 50.0% | |
| TGGATCTCTTCCCTGGTGAT+CGG | + | chr5.1:6821754-6821773 | MS.gene54216:CDS | 50.0% | |
| TTAGCACAATGGGGATTCGG+GGG | - | chr5.1:6821845-6821864 | None:intergenic | 50.0% | |
| TTCGACGGAATTCTCGGAAG+TGG | - | chr5.1:6820831-6820850 | None:intergenic | 50.0% | |
| AAACCTCGTTCCCGATCACC+AGG | - | chr5.1:6821768-6821787 | None:intergenic | 55.0% | |
| AACCTCGTTCCCGATCACCA+GGG | - | chr5.1:6821767-6821786 | None:intergenic | 55.0% | |
| ATCAAAGCAGGAGTCGCTGC+TGG | + | chr5.1:6822262-6822281 | MS.gene54216:CDS | 55.0% | |
| GCTGCTGGGATGCCTGTTAT+TGG | + | chr5.1:6822277-6822296 | MS.gene54216:CDS | 55.0% | |
| GGATCTCTTCCCTGGTGATC+GGG | + | chr5.1:6821755-6821774 | MS.gene54216:CDS | 55.0% | |
| TAGCACAATGGGGATTCGGG+GGG | - | chr5.1:6821844-6821863 | None:intergenic | 55.0% | |
| TCAAAGCAGGAGTCGCTGCT+GGG | + | chr5.1:6822263-6822282 | MS.gene54216:CDS | 55.0% | |
| ! | CGGACCTGTTTTGTCGTTGC+AGG | + | chr5.1:6822225-6822244 | MS.gene54216:intron | 55.0% |
| GATTCGGGGGGAGGTGAGTA+GGG | - | chr5.1:6821832-6821851 | None:intergenic | 60.0% | |
| TTCCCTGGTGATCGGGAACG+AGG | + | chr5.1:6821762-6821781 | MS.gene54216:CDS | 60.0% | |
| !! | GTAGGGTTCTGGATGCGGCT+TGG | - | chr5.1:6822098-6822117 | None:intergenic | 60.0% |
| CACAATGGGGATTCGGGGGG+AGG | - | chr5.1:6821841-6821860 | None:intergenic | 65.0% | |
| GGATTCGGGGGGAGGTGAGT+AGG | - | chr5.1:6821833-6821852 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6820824 | 6822423 | 6820824 | ID=MS.gene54216 |
| chr5.1 | mRNA | 6820824 | 6822423 | 6820824 | ID=MS.gene54216.t1;Parent=MS.gene54216 |
| chr5.1 | exon | 6820824 | 6820852 | 6820824 | ID=MS.gene54216.t1.exon1;Parent=MS.gene54216.t1 |
| chr5.1 | CDS | 6820824 | 6820852 | 6820824 | ID=cds.MS.gene54216.t1;Parent=MS.gene54216.t1 |
| chr5.1 | exon | 6821420 | 6821534 | 6821420 | ID=MS.gene54216.t1.exon2;Parent=MS.gene54216.t1 |
| chr5.1 | CDS | 6821420 | 6821534 | 6821420 | ID=cds.MS.gene54216.t1;Parent=MS.gene54216.t1 |
| chr5.1 | exon | 6821672 | 6821823 | 6821672 | ID=MS.gene54216.t1.exon3;Parent=MS.gene54216.t1 |
| chr5.1 | CDS | 6821672 | 6821823 | 6821672 | ID=cds.MS.gene54216.t1;Parent=MS.gene54216.t1 |
| chr5.1 | exon | 6821910 | 6822171 | 6821910 | ID=MS.gene54216.t1.exon4;Parent=MS.gene54216.t1 |
| chr5.1 | CDS | 6821910 | 6822171 | 6821910 | ID=cds.MS.gene54216.t1;Parent=MS.gene54216.t1 |
| chr5.1 | exon | 6822247 | 6822423 | 6822247 | ID=MS.gene54216.t1.exon5;Parent=MS.gene54216.t1 |
| chr5.1 | CDS | 6822247 | 6822423 | 6822247 | ID=cds.MS.gene54216.t1;Parent=MS.gene54216.t1 |
| Gene Sequence |
| Protein sequence |
