Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54323.t1 | XP_003593747.2 | 96.9 | 414 | 13 | 0 | 1 | 414 | 20 | 433 | 1.50E-232 | 815.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54323.t1 | O49523 | 61.6 | 396 | 147 | 3 | 21 | 413 | 20 | 413 | 3.9e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54323.t1 | G7IKB6 | 96.9 | 414 | 13 | 0 | 1 | 414 | 1 | 414 | 1.1e-232 | 815.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049261 | MS.gene54323 | 0.807683 | 4.48E-50 | -1.69E-46 |
| MS.gene054585 | MS.gene54323 | 0.832006 | 1.21E-55 | -1.69E-46 |
| MS.gene058015 | MS.gene54323 | 0.828901 | 6.95E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54323.t1 | MTR_2g015690 | 96.860 | 414 | 13 | 0 | 1 | 414 | 1 | 414 | 0.0 | 825 |
| MS.gene54323.t1 | MTR_4g087810 | 62.374 | 396 | 141 | 4 | 19 | 412 | 12 | 401 | 1.09e-176 | 499 |
| MS.gene54323.t1 | MTR_4g087830 | 61.364 | 396 | 145 | 4 | 19 | 412 | 3 | 392 | 3.10e-174 | 493 |
| MS.gene54323.t1 | MTR_4g080100 | 47.044 | 406 | 180 | 5 | 24 | 404 | 32 | 427 | 4.20e-124 | 367 |
| MS.gene54323.t1 | MTR_4g077070 | 43.489 | 407 | 197 | 8 | 20 | 404 | 100 | 495 | 1.36e-105 | 322 |
| MS.gene54323.t1 | MTR_7g096120 | 40.714 | 420 | 221 | 6 | 8 | 406 | 62 | 474 | 4.74e-102 | 312 |
| MS.gene54323.t1 | MTR_7g096140 | 41.221 | 393 | 203 | 6 | 20 | 391 | 74 | 459 | 2.15e-96 | 296 |
| MS.gene54323.t1 | MTR_5g013230 | 34.635 | 384 | 194 | 9 | 20 | 369 | 135 | 495 | 8.25e-63 | 211 |
| MS.gene54323.t1 | MTR_7g081645 | 36.986 | 365 | 184 | 15 | 19 | 361 | 74 | 414 | 1.16e-57 | 195 |
| MS.gene54323.t1 | MTR_7g006400 | 35.143 | 350 | 179 | 10 | 20 | 347 | 105 | 428 | 4.50e-54 | 187 |
| MS.gene54323.t1 | MTR_7g081620 | 34.975 | 406 | 197 | 15 | 14 | 370 | 63 | 450 | 3.57e-52 | 181 |
| MS.gene54323.t1 | MTR_4g099510 | 33.071 | 381 | 197 | 9 | 19 | 369 | 128 | 480 | 1.00e-49 | 176 |
| MS.gene54323.t1 | MTR_1995s0010 | 39.732 | 224 | 110 | 5 | 146 | 348 | 1 | 220 | 4.91e-41 | 145 |
| MS.gene54323.t1 | MTR_2g020020 | 30.769 | 182 | 91 | 8 | 131 | 310 | 89 | 237 | 9.96e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54323.t1 | AT4G18550 | 61.461 | 397 | 148 | 3 | 20 | 413 | 36 | 430 | 0.0 | 520 |
| MS.gene54323.t1 | AT4G18550 | 61.461 | 397 | 148 | 3 | 20 | 413 | 19 | 413 | 0.0 | 520 |
| MS.gene54323.t1 | AT1G06250 | 52.685 | 391 | 178 | 2 | 20 | 406 | 5 | 392 | 2.85e-151 | 435 |
| MS.gene54323.t1 | AT4G18550 | 61.290 | 279 | 105 | 2 | 20 | 297 | 36 | 312 | 5.17e-126 | 367 |
| MS.gene54323.t1 | AT2G42690 | 44.096 | 415 | 203 | 5 | 18 | 412 | 2 | 407 | 1.38e-112 | 336 |
| MS.gene54323.t1 | AT1G06800 | 42.476 | 412 | 199 | 10 | 20 | 404 | 85 | 485 | 2.44e-102 | 313 |
| MS.gene54323.t1 | AT1G51440 | 43.468 | 421 | 195 | 11 | 19 | 408 | 86 | 494 | 1.62e-100 | 309 |
| MS.gene54323.t1 | AT1G06250 | 51.601 | 281 | 129 | 2 | 130 | 406 | 1 | 278 | 1.08e-99 | 300 |
| MS.gene54323.t1 | AT2G30550 | 40.380 | 421 | 214 | 10 | 10 | 404 | 91 | 500 | 2.83e-97 | 301 |
| MS.gene54323.t1 | AT1G06800 | 41.274 | 361 | 174 | 10 | 20 | 353 | 85 | 434 | 1.15e-84 | 266 |
| MS.gene54323.t1 | AT1G30370 | 37.857 | 420 | 226 | 8 | 6 | 404 | 100 | 505 | 6.93e-84 | 266 |
| MS.gene54323.t1 | AT2G30550 | 39.566 | 369 | 186 | 10 | 10 | 352 | 91 | 448 | 4.77e-82 | 259 |
| MS.gene54323.t1 | AT2G44810 | 35.884 | 379 | 180 | 13 | 20 | 361 | 86 | 438 | 7.79e-60 | 201 |
| MS.gene54323.t1 | AT2G44810 | 36.486 | 370 | 172 | 13 | 29 | 361 | 5 | 348 | 2.09e-58 | 195 |
| MS.gene54323.t1 | AT4G16820 | 35.602 | 382 | 187 | 8 | 18 | 368 | 125 | 478 | 3.64e-58 | 198 |
| MS.gene54323.t1 | AT1G05800 | 34.699 | 366 | 198 | 9 | 12 | 357 | 72 | 416 | 1.19e-55 | 191 |
| MS.gene54323.t1 | AT2G31690 | 34.770 | 348 | 189 | 7 | 20 | 347 | 88 | 417 | 9.54e-55 | 189 |
| MS.gene54323.t1 | AT5G18640 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 5.16e-15 | 75.5 |
| MS.gene54323.t1 | AT5G18640 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.15e-14 | 75.5 |
| MS.gene54323.t1 | AT5G18640 | 31.868 | 182 | 90 | 7 | 131 | 310 | 101 | 250 | 1.15e-14 | 75.5 |
| MS.gene54323.t1 | AT5G18640 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.16e-14 | 75.5 |
| MS.gene54323.t1 | AT5G18640 | 32.927 | 164 | 83 | 6 | 149 | 310 | 100 | 238 | 1.16e-14 | 75.5 |
Find 90 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTATTGAAGGGAGATTT+TGG | 0.169096 | 2.3:-69660794 | None:intergenic |
| GTTTCTGCTCCTAAAGTATT+TGG | 0.175913 | 2.3:+69660704 | MS.gene54323:CDS |
| ACATCTGCATACCCAATAAA+AGG | 0.189119 | 2.3:-69662248 | None:intergenic |
| ATGGAGGGTTGTAGAGAATA+AGG | 0.217063 | 2.3:+69662481 | MS.gene54323:CDS |
| ACATAGATTTACCTGGTTTC+GGG | 0.253359 | 2.3:-69660822 | None:intergenic |
| AACATAGATTTACCTGGTTT+CGG | 0.266015 | 2.3:-69660823 | None:intergenic |
| TGGATCTTCAGAAGTATAAA+TGG | 0.266518 | 2.3:-69660774 | None:intergenic |
| TAATGATCTTCAGTTTCTTT+TGG | 0.277450 | 2.3:+69660682 | MS.gene54323:CDS |
| CTGCTATTACCAAATACTTT+AGG | 0.283364 | 2.3:-69660713 | None:intergenic |
| TTTGTTACAGAATATTTAAA+AGG | 0.323206 | 2.3:-69660467 | None:intergenic |
| TACCAACCTTGATGCACTTT+AGG | 0.338088 | 2.3:-69660749 | None:intergenic |
| CTTGGAGTAAGGAATCAAAT+TGG | 0.342591 | 2.3:+69660558 | MS.gene54323:CDS |
| TACCCAATAAAAGGGTAGTT+TGG | 0.342990 | 2.3:-69662239 | None:intergenic |
| CGCTTCCGGAACATTGATTT+CGG | 0.366404 | 2.3:-69660507 | None:intergenic |
| ATTTACCTGGTTTCGGGCAC+TGG | 0.370820 | 2.3:-69660816 | None:intergenic |
| AGATGGTTCATGGAAGCTTA+TGG | 0.372107 | 2.3:+69662520 | MS.gene54323:CDS |
| GCTATGCTGCTGTTGTTGTT+TGG | 0.373108 | 2.3:-69660233 | None:intergenic |
| GAAGGGATATTGTTATTGCT+TGG | 0.374037 | 2.3:+69660630 | MS.gene54323:CDS |
| GAAATAAGCATAACTATAAC+AGG | 0.376230 | 2.3:+69662005 | MS.gene54323:CDS |
| ACTATAACAGGTCACAGTTT+AGG | 0.384060 | 2.3:+69662017 | MS.gene54323:CDS |
| CATAATCCACTATGGTGAAA+TGG | 0.388866 | 2.3:+69660334 | MS.gene54323:CDS |
| CAAAGTTTGCAGGTAGTTGT+AGG | 0.393065 | 2.3:+69660396 | MS.gene54323:CDS |
| TCGGGCACTGGTCTTATTGA+AGG | 0.398715 | 2.3:-69660804 | None:intergenic |
| AACTCAGCGGCGAAAATCAT+TGG | 0.405365 | 2.3:+69660270 | MS.gene54323:CDS |
| GGAAAGATGTGTTGGGGAGA+AGG | 0.411910 | 2.3:+69660612 | MS.gene54323:CDS |
| GACTTTATAATAAACGCTTC+CGG | 0.415146 | 2.3:-69660521 | None:intergenic |
| GTAAGGAATCAAATTGGATT+GGG | 0.415930 | 2.3:+69660564 | MS.gene54323:CDS |
| AGTAAGGAATCAAATTGGAT+TGG | 0.423060 | 2.3:+69660563 | MS.gene54323:CDS |
| GCTTATTTGCATGGAGTGGC+AGG | 0.430370 | 2.3:+69662353 | MS.gene54323:CDS |
| TCTAGGGCTAGCAAATACTA+TGG | 0.437648 | 2.3:-69662132 | None:intergenic |
| GCAAATACTATGGCTGTAAC+TGG | 0.439803 | 2.3:-69662122 | None:intergenic |
| TTCAACAATCAGATGGTTCA+TGG | 0.443571 | 2.3:+69662510 | MS.gene54323:CDS |
| AACGATACAAACTTTGGAAT+GGG | 0.445770 | 2.3:+69660658 | MS.gene54323:CDS |
| GACTTCCGAAATCAATGTTC+CGG | 0.446184 | 2.3:+69660502 | MS.gene54323:CDS |
| GAGAAAGCATCAAAGTTTGC+AGG | 0.452694 | 2.3:+69660386 | MS.gene54323:CDS |
| ATCTAGAGAAGCTTGGAGTA+AGG | 0.456251 | 2.3:+69660547 | MS.gene54323:CDS |
| CGACGTTACATAATCCACTA+TGG | 0.458056 | 2.3:+69660326 | MS.gene54323:CDS |
| AAGTTTGTGTCACCAACTCT+AGG | 0.461380 | 2.3:-69662149 | None:intergenic |
| GAAAGATGTGTTGGGGAGAA+GGG | 0.463613 | 2.3:+69660613 | MS.gene54323:CDS |
| GCAGTGGACATTGTTACAAA+TGG | 0.466972 | 2.3:+69662062 | MS.gene54323:CDS |
| GAGAGGAACGATACAAACTT+TGG | 0.468667 | 2.3:+69660652 | MS.gene54323:CDS |
| TCTATGTATTTGAAGAGTCC+AGG | 0.484311 | 2.3:+69662302 | MS.gene54323:CDS |
| AATTTGGAGGCTTATTTGCA+TGG | 0.495411 | 2.3:+69662344 | MS.gene54323:CDS |
| AGTCTTTATCTAGAGAAGCT+TGG | 0.498976 | 2.3:+69660540 | MS.gene54323:CDS |
| TTTAAGTTGGCATAATTTGG+AGG | 0.502108 | 2.3:+69662331 | MS.gene54323:CDS |
| TGCCAACTTAAAATATTCCC+TGG | 0.503206 | 2.3:-69662320 | None:intergenic |
| GATGAAGGGAAAGATGTGTT+GGG | 0.510788 | 2.3:+69660605 | MS.gene54323:CDS |
| CTTGTGCCATTTCACCATAG+TGG | 0.510988 | 2.3:-69660340 | None:intergenic |
| GAGTAGCAATCATGATCAAA+AGG | 0.511049 | 2.3:+69660183 | None:intergenic |
| TTGGATTGGGTTTGTTGCTG+TGG | 0.511970 | 2.3:+69660577 | MS.gene54323:CDS |
| CTTAAGTGAGGTGAGAAGGT+TGG | 0.512596 | 2.3:+69661962 | MS.gene54323:CDS |
| AAGTGAGGTGAGAAGGTTGG+TGG | 0.515539 | 2.3:+69661965 | MS.gene54323:CDS |
| TGGAGGGTTGTAGAGAATAA+GGG | 0.516398 | 2.3:+69662482 | MS.gene54323:CDS |
| GAACGATACAAACTTTGGAA+TGG | 0.518160 | 2.3:+69660657 | MS.gene54323:CDS |
| ACAGCAGCATAGCAAACAAA+TGG | 0.523423 | 2.3:+69660243 | MS.gene54323:CDS |
| CGGGCACTGGTCTTATTGAA+GGG | 0.526702 | 2.3:-69660803 | None:intergenic |
| GGTTGTAGAGAATAAGGGTA+TGG | 0.529061 | 2.3:+69662487 | MS.gene54323:CDS |
| CATCTGCATACCCAATAAAA+GGG | 0.530668 | 2.3:-69662247 | None:intergenic |
| GTTGCTGTGGCTAATGATGA+AGG | 0.534220 | 2.3:+69660590 | MS.gene54323:CDS |
| TGATGAAGGGAAAGATGTGT+TGG | 0.535789 | 2.3:+69660604 | MS.gene54323:CDS |
| TTTATTGGGTATGCAGATGT+TGG | 0.539197 | 2.3:+69662251 | MS.gene54323:CDS |
| CATGGAGTGGCAGGAACACA+AGG | 0.541108 | 2.3:+69662362 | MS.gene54323:CDS |
| ATCCTAAAGTGCATCAAGGT+TGG | 0.542256 | 2.3:+69660747 | MS.gene54323:CDS |
| TGCACTTGTGAATAAAACAT+TGG | 0.548353 | 2.3:+69662424 | MS.gene54323:CDS |
| CTTGTGAATAAAACATTGGA+TGG | 0.548661 | 2.3:+69662428 | MS.gene54323:CDS |
| TAAGACCAGTGCCCGAAACC+AGG | 0.563404 | 2.3:+69660811 | MS.gene54323:CDS |
| AGGTCTTAAGTGAGGTGAGA+AGG | 0.577836 | 2.3:+69661958 | MS.gene54323:intron |
| TCTACAACCCTCCATGACAC+TGG | 0.578955 | 2.3:-69662473 | None:intergenic |
| AGTTTGTGTCACCAACTCTA+GGG | 0.582592 | 2.3:-69662148 | None:intergenic |
| GTATTTGCTAGCCCTAGAGT+TGG | 0.582655 | 2.3:+69662137 | MS.gene54323:CDS |
| AATACCTTGTGCCAGTGTCA+TGG | 0.585230 | 2.3:+69662462 | MS.gene54323:CDS |
| CTATGTATTTGAAGAGTCCA+GGG | 0.587725 | 2.3:+69662303 | MS.gene54323:CDS |
| GGAGGCTTATTTGCATGGAG+TGG | 0.592309 | 2.3:+69662349 | MS.gene54323:CDS |
| GATATTGTTATTGCTTGGAG+AGG | 0.596230 | 2.3:+69660635 | MS.gene54323:CDS |
| AATGATCCTAAAGTGCATCA+AGG | 0.597945 | 2.3:+69660743 | MS.gene54323:CDS |
| ATGGAAGCTTATGGATCATG+AGG | 0.613240 | 2.3:+69662529 | MS.gene54323:CDS |
| CCCTCCATGACACTGGCACA+AGG | 0.616143 | 2.3:-69662466 | None:intergenic |
| CGTCGTAGATCAATGTCAAG+AGG | 0.622571 | 2.3:-69660308 | None:intergenic |
| GTCGTAGATCAATGTCAAGA+GGG | 0.625735 | 2.3:-69660307 | None:intergenic |
| AGCGGCGAAAATCATTGGAT+AGG | 0.626832 | 2.3:+69660275 | MS.gene54323:CDS |
| GGTATGGTTCAACAATCAGA+TGG | 0.636286 | 2.3:+69662503 | MS.gene54323:CDS |
| ACCTTGTGCCAGTGTCATGG+AGG | 0.647161 | 2.3:+69662465 | MS.gene54323:CDS |
| ATTTGTGCAGGTCTTAAGTG+AGG | 0.649606 | 2.3:+69661950 | MS.gene54323:intron |
| TAGCAATCATGATCAAAAGG+TGG | 0.653386 | 2.3:+69660186 | None:intergenic |
| TTGCTGTGGCTAATGATGAA+GGG | 0.655838 | 2.3:+69660591 | MS.gene54323:CDS |
| ATGAAGGGAAAGATGTGTTG+GGG | 0.669413 | 2.3:+69660606 | MS.gene54323:CDS |
| CCTTGTGCCAGTGTCATGGA+GGG | 0.679650 | 2.3:+69662466 | MS.gene54323:CDS |
| AATTGCAACTCTAAATGCAG+TGG | 0.688195 | 2.3:+69662046 | MS.gene54323:CDS |
| AACAAATGGCAACAACTCAG+CGG | 0.706384 | 2.3:+69660257 | MS.gene54323:CDS |
| ATGGAGTGGCAGGAACACAA+GGG | 0.725550 | 2.3:+69662363 | MS.gene54323:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACCAAAAAAAATATTAAAT+TGG | + | chr2.3:69661478-69661497 | MS.gene54323:intron | 10.0% |
| !! | ACACTTTAATTAAAAAAAAT+TGG | + | chr2.3:69661894-69661913 | MS.gene54323:intron | 10.0% |
| !! | TAAACAAAAATTTATATTTG+TGG | + | chr2.3:69661804-69661823 | MS.gene54323:intron | 10.0% |
| !!! | AACCAATTTAATATTTTTTT+TGG | - | chr2.3:69661483-69661502 | None:intergenic | 10.0% |
| !!! | ATATCAATTATTTTATTTGA+GGG | - | chr2.3:69661249-69661268 | None:intergenic | 10.0% |
| !!! | TAGTATTTTTTTCTTTAAAA+CGG | + | chr2.3:69660857-69660876 | MS.gene54323:intron | 10.0% |
| !!! | TATATCAATTATTTTATTTG+AGG | - | chr2.3:69661250-69661269 | None:intergenic | 10.0% |
| !! | AAAAAAAAAATCAAGGAAAA+AGG | + | chr2.3:69661223-69661242 | MS.gene54323:intron | 15.0% |
| !! | AAAATAAAAATTCAAGTGTT+TGG | + | chr2.3:69661736-69661755 | MS.gene54323:intron | 15.0% |
| !! | CATAATGAAAAACTAATATA+TGG | - | chr2.3:69661066-69661085 | None:intergenic | 15.0% |
| !! | TTTAACTACTAAAATCAATA+TGG | + | chr2.3:69661114-69661133 | MS.gene54323:intron | 15.0% |
| !! | TTTGTTACAGAATATTTAAA+AGG | - | chr2.3:69660470-69660489 | None:intergenic | 15.0% |
| !!! | AGATTATATTAGTTTGATAT+TGG | - | chr2.3:69661706-69661725 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTCTTTAAAAC+GGG | + | chr2.3:69660858-69660877 | MS.gene54323:intron | 15.0% |
| !!! | TCTAAAGTTTTTTTAGAAAA+TGG | + | chr2.3:69660440-69660459 | MS.gene54323:CDS | 15.0% |
| !!! | TGATTTTAGTAGTTAAAATA+TGG | - | chr2.3:69661111-69661130 | None:intergenic | 15.0% |
| !!! | TTCCTTGATTTTTTTTTTTT+TGG | - | chr2.3:69661221-69661240 | None:intergenic | 15.0% |
| !! | AGAGAATAATATTAGAAAAG+AGG | + | chr2.3:69661281-69661300 | MS.gene54323:intron | 20.0% |
| !! | CTCCAAAAAAAAAAAAATCA+AGG | + | chr2.3:69661216-69661235 | MS.gene54323:intron | 20.0% |
| !!! | AAACCATATTGTTTTTTTCA+AGG | - | chr2.3:69661146-69661165 | None:intergenic | 20.0% |
| !!! | AAATGATTGATTAGTTGTTA+AGG | + | chr2.3:69661763-69661782 | MS.gene54323:intron | 20.0% |
| !!! | AACCATATTGTTTTTTTCAA+GGG | - | chr2.3:69661145-69661164 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTATTTGCTTGA+TGG | - | chr2.3:69661795-69661814 | None:intergenic | 20.0% |
| !!! | CTTGATTTTTTTTTTTTTGG+AGG | - | chr2.3:69661218-69661237 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTCTTTAAAACG+GGG | + | chr2.3:69660859-69660878 | MS.gene54323:intron | 20.0% |
| !!! | TATATGACTATTTCTTTAGT+TGG | - | chr2.3:69661546-69661565 | None:intergenic | 20.0% |
| !!! | TATTTTAAGTTGGCATAATT+TGG | + | chr2.3:69662328-69662347 | MS.gene54323:CDS | 20.0% |
| !!! | TATTTTTTTCTTTAAAACGG+GGG | + | chr2.3:69660860-69660879 | MS.gene54323:intron | 20.0% |
| !!! | TCTTATTTACAAGTTTATTG+TGG | + | chr2.3:69661570-69661589 | MS.gene54323:intron | 20.0% |
| ! | ATGCTCAATAAAGCAAATAT+AGG | + | chr2.3:69660960-69660979 | MS.gene54323:intron | 25.0% |
| ! | CATATATCTCTTTCAAAGTT+TGG | - | chr2.3:69661017-69661036 | None:intergenic | 25.0% |
| ! | GAAATAAGCATAACTATAAC+AGG | + | chr2.3:69662005-69662024 | MS.gene54323:CDS | 25.0% |
| ! | TAATATAGTTTAGTCCATGT+AGG | - | chr2.3:69661653-69661672 | None:intergenic | 25.0% |
| ! | TTCCCTTGAAAAAAACAATA+TGG | + | chr2.3:69661140-69661159 | MS.gene54323:intron | 25.0% |
| !! | ATTTAGAACATAGATTTACC+TGG | - | chr2.3:69660832-69660851 | None:intergenic | 25.0% |
| !! | TAATGATCTTCAGTTTCTTT+TGG | + | chr2.3:69660682-69660701 | MS.gene54323:CDS | 25.0% |
| !!! | ATATTTTTATCATGTGAGCT+AGG | - | chr2.3:69661369-69661388 | None:intergenic | 25.0% |
| AACATAGATTTACCTGGTTT+CGG | - | chr2.3:69660826-69660845 | None:intergenic | 30.0% | |
| AACCAGATGGTTTATGAAAA+AGG | - | chr2.3:69660993-69661012 | None:intergenic | 30.0% | |
| AGAATTCAACTTAGGTAACA+TGG | + | chr2.3:69661866-69661885 | MS.gene54323:intron | 30.0% | |
| AGTAAGGAATCAAATTGGAT+TGG | + | chr2.3:69660563-69660582 | MS.gene54323:CDS | 30.0% | |
| ATCTCACACATACAAAATCA+AGG | - | chr2.3:69661430-69661449 | None:intergenic | 30.0% | |
| CCAAAAATATGACATTGTTG+CGG | - | chr2.3:69661318-69661337 | None:intergenic | 30.0% | |
| CTGCTATTACCAAATACTTT+AGG | - | chr2.3:69660716-69660735 | None:intergenic | 30.0% | |
| CTTGTGAATAAAACATTGGA+TGG | + | chr2.3:69662428-69662447 | MS.gene54323:CDS | 30.0% | |
| GACTTTATAATAAACGCTTC+CGG | - | chr2.3:69660524-69660543 | None:intergenic | 30.0% | |
| GTAAGGAATCAAATTGGATT+GGG | + | chr2.3:69660564-69660583 | MS.gene54323:CDS | 30.0% | |
| TAGTGGTAAGAATTCAACTT+AGG | + | chr2.3:69661858-69661877 | MS.gene54323:intron | 30.0% | |
| TGCACTTGTGAATAAAACAT+TGG | + | chr2.3:69662424-69662443 | MS.gene54323:CDS | 30.0% | |
| ! | AATATGGTTTGTGTATTACG+TGG | + | chr2.3:69661156-69661175 | MS.gene54323:intron | 30.0% |
| ! | ATATGGTTTGTGTATTACGT+GGG | + | chr2.3:69661157-69661176 | MS.gene54323:intron | 30.0% |
| ! | TGGATCTTCAGAAGTATAAA+TGG | - | chr2.3:69660777-69660796 | None:intergenic | 30.0% |
| ! | TTAGCGAAAATCTTTTCCAA+CGG | + | chr2.3:69661501-69661520 | MS.gene54323:intron | 30.0% |
| ! | TTCCAAACTACCCTTTTATT+GGG | + | chr2.3:69662237-69662256 | MS.gene54323:CDS | 30.0% |
| !! | AACGATACAAACTTTGGAAT+GGG | + | chr2.3:69660658-69660677 | MS.gene54323:CDS | 30.0% |
| !! | TATTTCTTTAGTTGGTCTTG+TGG | - | chr2.3:69661538-69661557 | None:intergenic | 30.0% |
| !! | TGATAATTATCGATTTGTGC+AGG | + | chr2.3:69661938-69661957 | MS.gene54323:intron | 30.0% |
| !! | TTTAAGTTGGCATAATTTGG+AGG | + | chr2.3:69662331-69662350 | MS.gene54323:CDS | 30.0% |
| !! | TTTTTGGAGGTCTAAAACAA+GGG | - | chr2.3:69661205-69661224 | None:intergenic | 30.0% |
| !!! | TTTTTTGGAGGTCTAAAACA+AGG | - | chr2.3:69661206-69661225 | None:intergenic | 30.0% |
| AATGATCCTAAAGTGCATCA+AGG | + | chr2.3:69660743-69660762 | MS.gene54323:CDS | 35.0% | |
| AATTGCAACTCTAAATGCAG+TGG | + | chr2.3:69662046-69662065 | MS.gene54323:CDS | 35.0% | |
| AATTTGGAGGCTTATTTGCA+TGG | + | chr2.3:69662344-69662363 | MS.gene54323:CDS | 35.0% | |
| ACATAGATTTACCTGGTTTC+GGG | - | chr2.3:69660825-69660844 | None:intergenic | 35.0% | |
| ACATCTGCATACCCAATAAA+AGG | - | chr2.3:69662251-69662270 | None:intergenic | 35.0% | |
| ACCACTAAATTGATGTCTCA+TGG | - | chr2.3:69661845-69661864 | None:intergenic | 35.0% | |
| ACTATAACAGGTCACAGTTT+AGG | + | chr2.3:69662017-69662036 | MS.gene54323:CDS | 35.0% | |
| AGCCTACAAATGTGTTAGAT+TGG | + | chr2.3:69661627-69661646 | MS.gene54323:intron | 35.0% | |
| AGTCTTTATCTAGAGAAGCT+TGG | + | chr2.3:69660540-69660559 | MS.gene54323:CDS | 35.0% | |
| ATGTCTCATGGACATTCAAT+CGG | - | chr2.3:69661833-69661852 | None:intergenic | 35.0% | |
| CATAATCCACTATGGTGAAA+TGG | + | chr2.3:69660334-69660353 | MS.gene54323:CDS | 35.0% | |
| CATCTGCATACCCAATAAAA+GGG | - | chr2.3:69662250-69662269 | None:intergenic | 35.0% | |
| CTATGTATTTGAAGAGTCCA+GGG | + | chr2.3:69662303-69662322 | MS.gene54323:CDS | 35.0% | |
| CTTGGAGTAAGGAATCAAAT+TGG | + | chr2.3:69660558-69660577 | MS.gene54323:CDS | 35.0% | |
| GTTAGTTGAGACGTTATGAT+AGG | + | chr2.3:69661396-69661415 | MS.gene54323:intron | 35.0% | |
| TACCCAATAAAAGGGTAGTT+TGG | - | chr2.3:69662242-69662261 | None:intergenic | 35.0% | |
| TCCATGAGACATCAATTTAG+TGG | + | chr2.3:69661841-69661860 | MS.gene54323:intron | 35.0% | |
| TCTATGTATTTGAAGAGTCC+AGG | + | chr2.3:69662302-69662321 | MS.gene54323:CDS | 35.0% | |
| TGCCAACTTAAAATATTCCC+TGG | - | chr2.3:69662323-69662342 | None:intergenic | 35.0% | |
| TGTGGAAATAATTTGACCGT+TGG | - | chr2.3:69661520-69661539 | None:intergenic | 35.0% | |
| TTCAACAATCAGATGGTTCA+TGG | + | chr2.3:69662510-69662529 | MS.gene54323:CDS | 35.0% | |
| TTTATTGGGTATGCAGATGT+TGG | + | chr2.3:69662251-69662270 | MS.gene54323:CDS | 35.0% | |
| ! | CCGCAACAATGTCATATTTT+TGG | + | chr2.3:69661315-69661334 | MS.gene54323:intron | 35.0% |
| ! | GAACGATACAAACTTTGGAA+TGG | + | chr2.3:69660657-69660676 | MS.gene54323:CDS | 35.0% |
| ! | GAAGGGATATTGTTATTGCT+TGG | + | chr2.3:69660630-69660649 | MS.gene54323:CDS | 35.0% |
| ! | GATATTGTTATTGCTTGGAG+AGG | + | chr2.3:69660635-69660654 | MS.gene54323:CDS | 35.0% |
| ! | GTTCCAAACTACCCTTTTAT+TGG | + | chr2.3:69662236-69662255 | MS.gene54323:CDS | 35.0% |
| ! | GTTTCTGCTCCTAAAGTATT+TGG | + | chr2.3:69660704-69660723 | MS.gene54323:CDS | 35.0% |
| !! | GTCCAGGGAATATTTTAAGT+TGG | + | chr2.3:69662318-69662337 | MS.gene54323:CDS | 35.0% |
| !! | GTCTTATTGAAGGGAGATTT+TGG | - | chr2.3:69660797-69660816 | None:intergenic | 35.0% |
| !! | TGCCTTTTTCATAAACCATC+TGG | + | chr2.3:69660988-69661007 | MS.gene54323:intron | 35.0% |
| AACAAATGGCAACAACTCAG+CGG | + | chr2.3:69660257-69660276 | MS.gene54323:CDS | 40.0% | |
| AAGTTTGTGTCACCAACTCT+AGG | - | chr2.3:69662152-69662171 | None:intergenic | 40.0% | |
| ACAGCAGCATAGCAAACAAA+TGG | + | chr2.3:69660243-69660262 | MS.gene54323:CDS | 40.0% | |
| AGATGGTTCATGGAAGCTTA+TGG | + | chr2.3:69662520-69662539 | MS.gene54323:CDS | 40.0% | |
| AGTTTGTGTCACCAACTCTA+GGG | - | chr2.3:69662151-69662170 | None:intergenic | 40.0% | |
| ATCCTAAAGTGCATCAAGGT+TGG | + | chr2.3:69660747-69660766 | MS.gene54323:CDS | 40.0% | |
| ATCTAGAGAAGCTTGGAGTA+AGG | + | chr2.3:69660547-69660566 | MS.gene54323:CDS | 40.0% | |
| ATGAAGGGAAAGATGTGTTG+GGG | + | chr2.3:69660606-69660625 | MS.gene54323:CDS | 40.0% | |
| ATGGAAGCTTATGGATCATG+AGG | + | chr2.3:69662529-69662548 | MS.gene54323:CDS | 40.0% | |
| ATGGAGGGTTGTAGAGAATA+AGG | + | chr2.3:69662481-69662500 | MS.gene54323:CDS | 40.0% | |
| ATTTGTGCAGGTCTTAAGTG+AGG | + | chr2.3:69661950-69661969 | MS.gene54323:intron | 40.0% | |
| CAAAGTTTGCAGGTAGTTGT+AGG | + | chr2.3:69660396-69660415 | MS.gene54323:CDS | 40.0% | |
| CGACGTTACATAATCCACTA+TGG | + | chr2.3:69660326-69660345 | MS.gene54323:CDS | 40.0% | |
| GACTTCCGAAATCAATGTTC+CGG | + | chr2.3:69660502-69660521 | MS.gene54323:CDS | 40.0% | |
| GAGAGGAACGATACAAACTT+TGG | + | chr2.3:69660652-69660671 | MS.gene54323:CDS | 40.0% | |
| GATGAAGGGAAAGATGTGTT+GGG | + | chr2.3:69660605-69660624 | MS.gene54323:CDS | 40.0% | |
| GCAAATACTATGGCTGTAAC+TGG | - | chr2.3:69662125-69662144 | None:intergenic | 40.0% | |
| GCAGTGGACATTGTTACAAA+TGG | + | chr2.3:69662062-69662081 | MS.gene54323:CDS | 40.0% | |
| GGCCAATCTAACACATTTGT+AGG | - | chr2.3:69661632-69661651 | None:intergenic | 40.0% | |
| GGTATGGTTCAACAATCAGA+TGG | + | chr2.3:69662503-69662522 | MS.gene54323:CDS | 40.0% | |
| GGTTGTAGAGAATAAGGGTA+TGG | + | chr2.3:69662487-69662506 | MS.gene54323:CDS | 40.0% | |
| GTCGTAGATCAATGTCAAGA+GGG | - | chr2.3:69660310-69660329 | None:intergenic | 40.0% | |
| TACCAACCTTGATGCACTTT+AGG | - | chr2.3:69660752-69660771 | None:intergenic | 40.0% | |
| TGATGAAGGGAAAGATGTGT+TGG | + | chr2.3:69660604-69660623 | MS.gene54323:CDS | 40.0% | |
| TGGAGGGTTGTAGAGAATAA+GGG | + | chr2.3:69662482-69662501 | MS.gene54323:CDS | 40.0% | |
| TTCAAAGTTTGGCAACCAGA+TGG | - | chr2.3:69661006-69661025 | None:intergenic | 40.0% | |
| TTGCTGTGGCTAATGATGAA+GGG | + | chr2.3:69660591-69660610 | MS.gene54323:CDS | 40.0% | |
| ! | TCTAGGGCTAGCAAATACTA+TGG | - | chr2.3:69662135-69662154 | None:intergenic | 40.0% |
| !! | ATGTGTTAGATTGGCCTACA+TGG | + | chr2.3:69661636-69661655 | MS.gene54323:intron | 40.0% |
| !! | GAGAAAGCATCAAAGTTTGC+AGG | + | chr2.3:69660386-69660405 | MS.gene54323:CDS | 40.0% |
| AACTCAGCGGCGAAAATCAT+TGG | + | chr2.3:69660270-69660289 | MS.gene54323:CDS | 45.0% | |
| AATACCTTGTGCCAGTGTCA+TGG | + | chr2.3:69662462-69662481 | MS.gene54323:CDS | 45.0% | |
| AGCGGCGAAAATCATTGGAT+AGG | + | chr2.3:69660275-69660294 | MS.gene54323:CDS | 45.0% | |
| AGGTCTTAAGTGAGGTGAGA+AGG | + | chr2.3:69661958-69661977 | MS.gene54323:intron | 45.0% | |
| CGTCGTAGATCAATGTCAAG+AGG | - | chr2.3:69660311-69660330 | None:intergenic | 45.0% | |
| CTTAAGTGAGGTGAGAAGGT+TGG | + | chr2.3:69661962-69661981 | MS.gene54323:CDS | 45.0% | |
| GAAAGATGTGTTGGGGAGAA+GGG | + | chr2.3:69660613-69660632 | MS.gene54323:CDS | 45.0% | |
| GTTGCTGTGGCTAATGATGA+AGG | + | chr2.3:69660590-69660609 | MS.gene54323:CDS | 45.0% | |
| TGTGTATTACGTGGGTCCAA+GGG | + | chr2.3:69661165-69661184 | MS.gene54323:intron | 45.0% | |
| TTGTGTATTACGTGGGTCCA+AGG | + | chr2.3:69661164-69661183 | MS.gene54323:intron | 45.0% | |
| ! | GCTATGCTGCTGTTGTTGTT+TGG | - | chr2.3:69660236-69660255 | None:intergenic | 45.0% |
| ! | GGAGGTCTAAAACAAGGGTT+TGG | - | chr2.3:69661200-69661219 | None:intergenic | 45.0% |
| ! | GTATTTGCTAGCCCTAGAGT+TGG | + | chr2.3:69662137-69662156 | MS.gene54323:CDS | 45.0% |
| !! | CGCTTCCGGAACATTGATTT+CGG | - | chr2.3:69660510-69660529 | None:intergenic | 45.0% |
| !! | CTTGTGCCATTTCACCATAG+TGG | - | chr2.3:69660343-69660362 | None:intergenic | 45.0% |
| !! | TTGGATTGGGTTTGTTGCTG+TGG | + | chr2.3:69660577-69660596 | MS.gene54323:CDS | 45.0% |
| AAGTGAGGTGAGAAGGTTGG+TGG | + | chr2.3:69661965-69661984 | MS.gene54323:CDS | 50.0% | |
| ATGACATTGTTGCGGCATGC+TGG | - | chr2.3:69661310-69661329 | None:intergenic | 50.0% | |
| ATGGAGTGGCAGGAACACAA+GGG | + | chr2.3:69662363-69662382 | MS.gene54323:CDS | 50.0% | |
| ATTTACCTGGTTTCGGGCAC+TGG | - | chr2.3:69660819-69660838 | None:intergenic | 50.0% | |
| GCTTATTTGCATGGAGTGGC+AGG | + | chr2.3:69662353-69662372 | MS.gene54323:CDS | 50.0% | |
| GGAAAGATGTGTTGGGGAGA+AGG | + | chr2.3:69660612-69660631 | MS.gene54323:CDS | 50.0% | |
| GGAGGCTTATTTGCATGGAG+TGG | + | chr2.3:69662349-69662368 | MS.gene54323:CDS | 50.0% | |
| TCTACAACCCTCCATGACAC+TGG | - | chr2.3:69662476-69662495 | None:intergenic | 50.0% | |
| !! | CGGGCACTGGTCTTATTGAA+GGG | - | chr2.3:69660806-69660825 | None:intergenic | 50.0% |
| !! | TCGGGCACTGGTCTTATTGA+AGG | - | chr2.3:69660807-69660826 | None:intergenic | 50.0% |
| ACATTGTTGCGGCATGCTGG+TGG | - | chr2.3:69661307-69661326 | None:intergenic | 55.0% | |
| ACCTTGTGCCAGTGTCATGG+AGG | + | chr2.3:69662465-69662484 | MS.gene54323:CDS | 55.0% | |
| CATGGAGTGGCAGGAACACA+AGG | + | chr2.3:69662362-69662381 | MS.gene54323:CDS | 55.0% | |
| CCTTGTGCCAGTGTCATGGA+GGG | + | chr2.3:69662466-69662485 | MS.gene54323:CDS | 55.0% | |
| TAAGACCAGTGCCCGAAACC+AGG | + | chr2.3:69660811-69660830 | MS.gene54323:CDS | 55.0% | |
| ACGTGGGTCCAAGGGTGAAG+CGG | + | chr2.3:69661173-69661192 | MS.gene54323:intron | 60.0% | |
| CCCTCCATGACACTGGCACA+AGG | - | chr2.3:69662469-69662488 | None:intergenic | 60.0% | |
| ! | GGTTTGGTCCGCTTCACCCT+TGG | - | chr2.3:69661184-69661203 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 69660194 | 69662565 | 69660194 | ID=MS.gene54323 |
| chr2.3 | mRNA | 69660194 | 69662565 | 69660194 | ID=MS.gene54323.t1;Parent=MS.gene54323 |
| chr2.3 | exon | 69660194 | 69660832 | 69660194 | ID=MS.gene54323.t1.exon1;Parent=MS.gene54323.t1 |
| chr2.3 | CDS | 69660194 | 69660832 | 69660194 | ID=cds.MS.gene54323.t1;Parent=MS.gene54323.t1 |
| chr2.3 | exon | 69661960 | 69662565 | 69661960 | ID=MS.gene54323.t1.exon2;Parent=MS.gene54323.t1 |
| chr2.3 | CDS | 69661960 | 69662565 | 69661960 | ID=cds.MS.gene54323.t1;Parent=MS.gene54323.t1 |
| Gene Sequence |
| Protein sequence |
